genome.fa.s8687.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008687.1 Hibiscus syriacus cultivar Beakdansim tig00111711_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43790

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2854--2895	14	3.0	14	85	0	57	30	0	23	45	1.53
3218--3254	16	2.2	18	85	9	51	62	0	0	37	0.96
3650--3690	16	2.6	16	88	3	57	36	12	21	29	1.90
6964--7033	35	2.0	35	85	0	95	31	17	15	35	1.91
9220--9263	12	3.8	12	90	3	63	11	9	47	31	1.71
9218--9263	24	2.0	24	91	4	76	10	10	47	30	1.73
9281--9341	24	2.6	25	78	17	69	44	0	0	55	0.99
9725--9760	2	18.0	2	94	0	63	47	0	2	50	1.15
16000--16045	19	2.3	20	81	7	58	28	30	15	26	1.96
16131--16197	20	3.3	20	77	4	80	41	16	23	17	1.89
16141--16216	21	3.7	21	76	3	91	40	17	25	17	1.90
16127--16216	41	2.2	41	97	0	171	41	16	24	17	1.90
16205--16299	20	4.7	20	77	5	82	34	24	17	23	1.96
16852--16896	19	2.4	19	92	0	72	48	26	15	8	1.74
16892--17037	19	8.1	19	71	17	105	13	23	21	42	1.87
16925--17012	33	2.6	33	90	1	131	12	25	23	38	1.90
16991--17037	20	2.3	20	79	13	60	12	25	14	46	1.80
19076--19142	21	3.2	21	66	6	55	23	35	20	19	1.95
19020--19142	42	2.9	42	80	4	106	22	36	17	23	1.94
20499--20534	14	2.6	14	95	0	63	30	0	25	44	1.54
20713--20863	19	8.7	19	64	21	80	15	22	20	41	1.89
20717--20843	33	3.9	32	87	8	193	14	22	19	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20710--20842	66	2.0	66	97	0	248	16	22	19	41	1.90
23132--23156	12	2.1	12	100	0	50	0	28	0	72	0.86
23331--23384	24	2.2	24	90	0	81	38	20	16	24	1.92
24445--24502	20	2.9	20	94	0	98	37	22	22	17	1.93
24521--24588	19	3.8	19	83	12	92	14	22	16	47	1.82
26582--26647	19	3.4	19	83	4	87	37	24	22	15	1.92
26629--26699	32	2.2	33	92	2	117	50	22	18	8	1.73
26637--26694	14	3.9	14	72	16	53	51	24	15	8	1.71
26709--26801	32	2.8	33	90	3	143	15	18	19	47	1.83
26787--26829	20	2.2	20	87	4	61	18	23	20	37	1.94
26795--26840	20	2.3	20	88	0	65	15	21	26	36	1.93
27312--27356	18	2.5	18	88	0	72	13	15	44	26	1.83
28670--28707	20	1.9	20	88	0	58	50	21	15	13	1.78
28972--29015	22	2.0	22	95	0	79	18	15	45	20	1.85
29203--29255	20	2.7	20	93	0	88	24	18	28	28	1.98
29223--29300	41	1.9	41	84	5	104	23	16	20	39	1.92
29281--29378	20	4.7	21	78	5	101	19	24	17	38	1.92
29286--29378	41	2.3	41	100	0	150	17	24	18	39	1.91
37634--37697	21	3.0	21	88	4	101	26	23	26	23	2.00
38976--39097	64	1.9	66	89	6	196	27	21	16	35	1.94

Tables:   1

The End!