Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008691.1 Hibiscus syriacus cultivar Beakdansim tig00111719_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 175273
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
File 2 of 2
Found at i:144391 original size:6 final size:6
Alignment explanation
Indices: 144367--144452 Score: 64
Period size: 6 Copynumber: 14.3 Consensus size: 6
144357 AGCGGTCGCA
* * * * * *
144367 GAAGAT GAAGCT GACGAT GAAGAT GACGAT GATGAT GACGAT GAAGCT
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
** * * * *
144415 GGCGAT GAAGAT GATGAC GATGAT GATGAT GAAGAT GA
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GA
144453 TGATCCAAAC
Statistics
Matches: 62, Mismatches: 18, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
6 62 1.00
ACGTcount: A:0.37, C:0.08, G:0.35, T:0.20
Consensus pattern (6 bp):
GAAGAT
Found at i:144402 original size:3 final size:3
Alignment explanation
Indices: 144382--144456 Score: 60
Period size: 3 Copynumber: 25.0 Consensus size: 3
144372 TGAAGCTGAC
* * * * * ** *
144382 GAT GAA GAT GAC GAT GAT GAT GAC GAT GAA GCT GGC GAT GAA GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
* *
144430 GAC GAT GAT GAT GAT GAA GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT
144457 CCAAACAAGT
Statistics
Matches: 53, Mismatches: 19, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.36, C:0.07, G:0.35, T:0.23
Consensus pattern (3 bp):
GAT
Found at i:144421 original size:36 final size:36
Alignment explanation
Indices: 144370--144448 Score: 122
Period size: 36 Copynumber: 2.2 Consensus size: 36
144360 GGTCGCAGAA
*
144370 GATGAAGCTGACGATGAAGATGACGATGATGATGAC
1 GATGAAGCTGACGATGAAGATGACGACGATGATGAC
* * *
144406 GATGAAGCTGGCGATGAAGATGATGACGATGATGAT
1 GATGAAGCTGACGATGAAGATGACGACGATGATGAC
144442 GATGAAG
1 GATGAAG
144449 ATGATGATCC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.35, C:0.09, G:0.35, T:0.20
Consensus pattern (36 bp):
GATGAAGCTGACGATGAAGATGACGACGATGATGAC
Found at i:144456 original size:12 final size:12
Alignment explanation
Indices: 144370--144452 Score: 94
Period size: 12 Copynumber: 6.9 Consensus size: 12
144360 GGTCGCAGAA
*
144370 GATGAAGCTGAC
1 GATGAAGATGAC
144382 GATGAAGATGAC
1 GATGAAGATGAC
*
144394 GATGATGATGAC
1 GATGAAGATGAC
* *
144406 GATGAAGCTGGC
1 GATGAAGATGAC
*
144418 GATGAAGATGAT
1 GATGAAGATGAC
* * *
144430 GACGATGATGAT
1 GATGAAGATGAC
144442 GATGAAGATGA
1 GATGAAGATGA
144453 TGATCCAAAC
Statistics
Matches: 59, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 59 1.00
ACGTcount: A:0.36, C:0.08, G:0.35, T:0.20
Consensus pattern (12 bp):
GATGAAGATGAC
Found at i:146236 original size:183 final size:183
Alignment explanation
Indices: 145928--147101 Score: 2091
Period size: 183 Copynumber: 6.4 Consensus size: 183
145918 CTTTCAACAT
145928 ATTATAATAAAATAGGTAAATTTGCAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
1 ATTATAATAAAATAGGTAAATTTGCAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
145993 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
146058 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCATA
146111 ATTATAATAAAATAGGTAAATTTGCAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
1 ATTATAATAAAATAGGTAAATTTGCAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
*
146176 GGTCTACAACCTATATCAACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
*
146241 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCGTA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCATA
** * * * * * *
146294 ATTATAATGTAATAGATAATTTTGTAATATAACAGGTATAAATATACCGGTTGTATGAGCGAATA
1 ATTATAATAAAATAGGTAAATTTGCAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
146359 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
146424 AATGTGTC-ATACGATTT-AAAAAGTGTCGACATTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCATA
146475 ATTATAATAAAATAGGTAAATTTGCAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
1 ATTATAATAAAATAGGTAAATTTGCAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
146540 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
146605 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCATA
** * * * ** * *
146658 ATTATAATGTAATAGATAATTTTGTAATATAAAAGGTATAAATATACCGGTTGTATGAGCGAATA
1 ATTATAATAAAATAGGTAAATTTGCAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
146723 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
146788 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCATA
** * * * * *
146841 ATTATAATGTAATAGATAATTTTGTAATATAACAGGTATAAATATACCGGTTTTATGAGCGAATA
1 ATTATAATAAAATAGGTAAATTTGCAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
146906 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
146971 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCATA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCATA
147024 ATTATAATAAAATAGGTAAATTTGCAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
1 ATTATAATAAAATAGGTAAATTTGCAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
*
147089 TGTCTACAACCTA
66 GGTCTACAACCTA
147102 AAATGTGTCG
Statistics
Matches: 950, Mismatches: 39, Indels: 4
0.96 0.04 0.00
Matches are distributed among these distances:
181 163 0.17
182 18 0.02
183 769 0.81
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.33
Consensus pattern (183 bp):
ATTATAATAAAATAGGTAAATTTGCAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCATA
Found at i:146962 original size:547 final size:549
Alignment explanation
Indices: 145928--147101 Score: 2217
Period size: 547 Copynumber: 2.1 Consensus size: 549
145918 CTTTCAACAT
145928 ATTATAATAAAATAGGTAAATTTGCAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
1 ATTATAATAAAATAGGTAAATTTGCAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
145993 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
146058 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCATAATTATAATAAAA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCATAATTATAATAAAA
* ** * *
146123 TAGGTAAATTTGCAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCT
196 TAGATAAATTTGCAATATAAAAGGTATAAATATACCGGTTGTATGAGCGAATAGGTCTACAACCT
146188 ATATCAACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATA
261 ATATCAACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATA
*
146253 CGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCGTAATTATAATGTAATAGATAATTTTG
326 CGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTG
146318 TAATATAACAGGTATAAATATACCGGTTGTATGAGCGAATAGGTCTACAACCTATATCGACACTT
391 TAATATAACAGGTATAAATATACCGGTTGTATGAGCGAATAGGTCTACAACCTATATCGACACTT
146383 TTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTC-ATACGATTT-AAAAA
456 TTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATACGATTTAAAAAA
146446 GTGTCGACATTTACACATCGGAACCCATA
521 GTGTCGACATTTACACATCGGAACCCATA
146475 ATTATAATAAAATAGGTAAATTTGCAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
1 ATTATAATAAAATAGGTAAATTTGCAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
146540 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
**
146605 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCATAATTATAATGTAA
131 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCATAATTATAATAAAA
* *
146670 TAGATAATTTTGTAATATAAAAGGTATAAATATACCGGTTGTATGAGCGAATAGGTCTACAACCT
196 TAGATAAATTTGCAATATAAAAGGTATAAATATACCGGTTGTATGAGCGAATAGGTCTACAACCT
*
146735 ATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATA
261 ATATCAACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATA
146800 CGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTG
326 CGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTG
*
146865 TAATATAACAGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTT
391 TAATATAACAGGTATAAATATACCGGTTGTATGAGCGAATAGGTCTACAACCTATATCGACACTT
146930 TTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATACGATTTAAAAAA
456 TTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATACGATTTAAAAAA
146995 GTGTCGACATTTACACATCGGAACCCATA
521 GTGTCGACATTTACACATCGGAACCCATA
147024 ATTATAATAAAATAGGTAAATTTGCAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
1 ATTATAATAAAATAGGTAAATTTGCAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
*
147089 TGTCTACAACCTA
66 GGTCTACAACCTA
147102 AAATGTGTCG
Statistics
Matches: 612, Mismatches: 13, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
547 492 0.80
548 9 0.01
549 111 0.18
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.33
Consensus pattern (549 bp):
ATTATAATAAAATAGGTAAATTTGCAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATA
GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCATAATTATAATAAAA
TAGATAAATTTGCAATATAAAAGGTATAAATATACCGGTTGTATGAGCGAATAGGTCTACAACCT
ATATCAACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATA
CGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTG
TAATATAACAGGTATAAATATACCGGTTGTATGAGCGAATAGGTCTACAACCTATATCGACACTT
TTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATACGATTTAAAAAA
GTGTCGACATTTACACATCGGAACCCATA
Found at i:149638 original size:28 final size:23
Alignment explanation
Indices: 149582--149635 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
149572 TAACTACAAG
*
149582 TATATAATGTAATAGGTATCGTT
1 TATATAATGTAATAGGTAGCGTT
*
149605 TATATAATGTAATAGGTAGCGCT
1 TATATAATGTAATAGGTAGCGTT
149628 TATATAAT
1 TATATAAT
149636 ATATTGTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.37, C:0.06, G:0.17, T:0.41
Consensus pattern (23 bp):
TATATAATGTAATAGGTAGCGTT
Found at i:150087 original size:18 final size:18
Alignment explanation
Indices: 150066--150102 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
150056 GTAATTGGAG
150066 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
150084 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
150102 T
1 T
150103 ATATATTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:150110 original size:24 final size:24
Alignment explanation
Indices: 150058--150104 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
150048 TTTCATATGT
* *
150058 AATTGGAGTTTGAATTTAAATTTC
1 AATTTGAGTTTGAATTTAAATATC
*
150082 AATTTGAGTTTGAATTTCAATAT
1 AATTTGAGTTTGAATTTAAATAT
150105 ATATTTCGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTAAATATC
Found at i:150402 original size:39 final size:39
Alignment explanation
Indices: 150359--150445 Score: 147
Period size: 39 Copynumber: 2.2 Consensus size: 39
150349 TCCGATGCTC
*
150359 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
* *
150398 ATCAAAATTCAAATCTCATATGATGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
150437 ATCAAAATC
1 ATCAAAATC
150446 TACAACTTGA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.48, C:0.20, G:0.14, T:0.18
Consensus pattern (39 bp):
ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
Found at i:150894 original size:23 final size:23
Alignment explanation
Indices: 150863--150926 Score: 101
Period size: 23 Copynumber: 2.8 Consensus size: 23
150853 ATAGGTAAAA
*
150863 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
150886 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
150909 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
150927 TTGTTATATT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.36, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:150933 original size:23 final size:24
Alignment explanation
Indices: 150863--150935 Score: 98
Period size: 23 Copynumber: 3.2 Consensus size: 24
150853 ATAGGTAAAA
*
150863 ATATGATGTAATAGGTAG-CGCTT
1 ATATAATGTAATAGGTAGTCGCTT
*
150886 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGTCGCTT
*
150909 ATATAATGTAATAGGTAGTTG-TT
1 ATATAATGTAATAGGTAGTCGCTT
150932 ATAT
1 ATAT
150936 TGTAAAGTGT
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
23 43 0.96
24 2 0.04
ACGTcount: A:0.34, C:0.04, G:0.21, T:0.41
Consensus pattern (24 bp):
ATATAATGTAATAGGTAGTCGCTT
Found at i:151328 original size:23 final size:23
Alignment explanation
Indices: 151297--151369 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
151287 ATAGGTAAAA
*
151297 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
151320 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
151343 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
151366 ATAT
1 ATAT
151370 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:151369 original size:434 final size:432
Alignment explanation
Indices: 150652--151707 Score: 1985
Period size: 434 Copynumber: 2.4 Consensus size: 432
150642 TTATCTTTGG
150652 TTAATGTTGTTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAATAATTTT
1 TTAATGTTGTTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAATAATTTT
150717 TTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATT
66 TTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATT
* *
150782 GAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAGGTATGGACACTTTC
131 GAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTA
150847 AATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATA
196 AATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATA
*
150912 TAATGTAATAGGTAGTTGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTT
261 TAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTT
*
150977 TTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATTTTAATTTAGTAA
326 TTCACTGTGGAAAACATTAATTTAAGGTTATATTTTGAGTGAGTTTTAAGATTTTAATTTAGTAA
151042 TTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATA
391 TTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATA
151084 TTTAATGTTGTTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAATAATTT
1 -TTAATGTTGTTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAATAATTT
151149 TTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAA
65 TTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAA
151214 TTGAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTT
129 TTGAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTT
151279 TAAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTA
194 TAAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTA
151344 TATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTT
259 TATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTT
*
151409 TTTTCACTGTTGAAAACATTAATTTAAGGTTATATTTTGAGTGAGTTTTAAGATTTTAATTTAGT
324 TTTTCACTGTGGAAAACATTAATTTAAGGTTATATTTTGAGTGAGTTTTAAGATTTTAATTTAGT
151474 AATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATA
389 AATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATA
* *
151518 TT-A--TTATTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAATAATTTT
1 TTAATGTTGTTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAATAATTTT
*
151580 TTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-CAAAAATT
66 TTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATT
*
151644 GAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAATTATGGACACTTT
131 GAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTT
151708 CAACATATTA
Statistics
Matches: 613, Mismatches: 9, Indels: 7
0.97 0.01 0.01
Matches are distributed among these distances:
428 70 0.11
430 113 0.18
432 1 0.00
433 123 0.20
434 306 0.50
ACGTcount: A:0.41, C:0.08, G:0.12, T:0.39
Consensus pattern (432 bp):
TTAATGTTGTTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAATAATTTT
TTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATT
GAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTA
AATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATA
TAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTT
TTCACTGTGGAAAACATTAATTTAAGGTTATATTTTGAGTGAGTTTTAAGATTTTAATTTAGTAA
TTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATA
Done.