Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008692.1 Hibiscus syriacus cultivar Beakdansim tig00111720_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  262021

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--146549
301
488.3
303
96
1
266879
25
27
23
24
2.00
146554--146584
14
2.2
14
94
0
53
6
12
25
54
1.62
146550--146604
24
2.3
24
90
0
83
12
10
18
58
1.63
147404--147455
11
4.6
11
88
4
77
26
23
25
25
2.00
147404--147480
23
3.3
23
85
3
84
25
23
23
27
2.00
147690--147754
16
4.1
16
90
4
96
7
12
24
55
1.63
147822--147852
16
1.9
16
100
0
62
12
12
16
58
1.64
149100--149184
24
3.5
24
84
9
111
29
24
41
4
1.75
163730--163779
24
2.1
24
85
7
66
60
14
2
24
1.45
165364--165411
25
2.0
24
84
12
62
33
25
10
31
1.89
166143--166285
7
19.4
7
69
17
85
76
2
15
5
1.06
166143--166275
44
3.0
42
77
14
119
76
2
15
5
1.06
166145--166310
39
4.5
37
73
13
128
75
2
16
5
1.09
166213--166276
10
6.5
10
76
15
53
79
1
17
1
0.89
168126--168172
23
2.0
23
100
0
94
42
17
21
19
1.89
168332--169279
232
4.1
233
85
1
1236
32
16
17
33
1.92
169125--169207
43
2.0
43
83
7
107
26
20
21
31
1.98
169562--170011
135
3.3
136
81
4
536
30
22
16
30
1.96
172717--172780
31
2.1
31
85
5
85
29
6
25
39
1.80
179384--179438
30
1.9
28
85
10
76
41
5
16
36
1.71
188658--188842
94
2.0
94
97
0
352
26
13
23
36
1.92
192135--192189
19
2.9
19
86
0
74
30
0
1
67
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
192126--192191
22
3.0
22
86
2
87
28
0
3
68
1.05
192136--192191
3
20.0
3
82
14
66
32
0
1
66
1.03
193719--193938
113
2.0
111
82
4
273
37
7
7
46
1.61
197725--197756
15
2.1
15
94
0
55
25
18
9
46
1.79
205080--205109
16
1.9
15
93
6
51
80
0
20
0
0.72
206632--207059
113
3.9
113
84
4
554
36
14
19
28
1.92
207405--207454
3
17.0
3
78
12
50
30
0
4
66
1.10
208953--208990
18
2.1
18
85
9
51
26
5
2
65
1.27
209066--209102
19
1.9
19
88
0
56
27
0
0
72
0.84
208963--209196
118
2.0
117
82
4
283
37
8
8
46
1.64
213408--213589
54
3.4
53
83
4
213
39
14
13
33
1.84
213434--213597
54
3.0
54
89
0
247
40
15
10
33
1.82
220460--220636
54
3.3
54
86
1
230
36
18
12
31
1.89
220979--221177
95
2.1
93
81
10
235
27
24
13
35
1.92
226464--226524
3
21.0
3
77
12
65
67
1
3
27
1.16
226731--227114
46
8.6
44
67
18
199
24
19
29
27
1.98
226722--227111
87
4.4
90
86
7
535
24
19
29
26
1.98
228076--228110
15
2.3
15
95
0
61
8
14
0
77
0.99
241715--241775
3
21.0
3
77
12
65
67
1
3
27
1.16
249562--249624
29
2.3
27
82
12
76
15
9
3
71
1.25
255368--255394
14
1.9
14
100
0
54
37
18
37
7
1.79
259420--259821
201
2.0
201
98
0
770
31
12
21
35
1.90

Tables:   1

The End!