Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008695.1 Hibiscus syriacus cultivar Beakdansim tig00111725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140010

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2831--2931
33
3.0
33
80
11
82
32
1
33
31
1.69
11227--11337
35
3.2
35
83
2
143
32
3
36
27
1.74
15407--15431
8
3.1
8
100
0
50
76
0
24
0
0.80
15390--15441
16
3.1
16
81
13
52
75
1
21
1
1.00
23733--23784
21
2.6
21
84
6
72
36
11
5
46
1.64
31302--31365
33
2.0
32
82
14
78
64
0
21
14
1.29
31336--31375
21
1.9
21
85
10
55
60
0
27
12
1.33
38610--38668
17
3.4
17
92
4
91
0
10
8
81
0.88
40316--40366
20
2.6
20
87
3
68
33
17
5
43
1.73
40719--40762
22
2.0
21
86
4
61
38
34
2
25
1.68
41061--41110
18
2.8
17
88
11
66
76
6
16
2
1.08
41061--41115
21
2.8
19
77
22
53
76
5
16
1
1.06
41081--41119
18
2.2
18
86
9
53
76
2
17
2
1.01
44442--44492
20
2.6
20
87
3
68
33
17
5
43
1.73
44845--44888
22
2.0
21
86
4
61
38
34
2
25
1.68
50626--50671
22
2.1
21
84
11
58
47
32
4
15
1.65
51405--51443
15
2.5
15
87
4
60
58
0
25
15
1.37
51587--51697
35
3.2
35
87
2
152
31
3
37
27
1.74
55170--55219
19
2.5
20
87
3
66
46
6
14
34
1.69
62634--62759
55
2.3
57
83
6
152
21
30
16
30
1.95
65312--65413
2
49.5
2
92
5
168
48
1
0
49
1.19
66948--67007
17
3.3
18
77
11
61
78
5
11
5
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71515--71553
17
2.3
16
83
12
51
79
0
15
5
0.90
71515--71554
18
2.3
17
82
4
53
80
0
15
5
0.88
76076--76125
18
2.9
17
80
16
59
78
6
12
4
1.08
76079--76125
17
2.8
16
84
9
58
78
4
12
4
1.04
82263--82313
19
2.6
20
90
3
77
43
5
15
35
1.71
85682--85779
33
2.9
33
80
7
81
30
2
37
29
1.69
85721--85833
36
3.2
36
91
1
165
27
3
37
31
1.74
89216--89262
14
3.3
15
74
17
55
2
17
2
78
0.94
89670--89739
33
2.1
33
84
5
88
31
1
37
30
1.66
89709--89821
36
3.2
36
91
1
165
27
3
37
31
1.74
91739--91793
24
2.3
25
81
6
60
32
16
21
29
1.95
94212--94262
24
2.1
24
82
7
59
64
13
13
7
1.48
94256--94284
15
2.0
15
93
6
51
75
3
20
0
0.94
95564--95618
24
2.3
25
81
6
60
32
16
21
29
1.95
98027--98077
24
2.1
24
85
7
68
62
15
13
7
1.52
98071--98099
15
2.0
15
93
6
51
75
3
20
0
0.94
99377--99431
24
2.3
25
81
6
60
32
16
21
29
1.95
102047--102106
30
2.0
31
86
3
86
28
8
10
53
1.63
103003--103053
20
2.6
19
78
3
57
37
17
3
41
1.68
109200--109243
22
2.0
21
86
4
61
38
34
2
25
1.68
117045--117129
11
7.2
11
72
22
66
31
36
3
28
1.74
117043--117146
36
2.9
36
95
1
183
30
36
3
28
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
117596--117642
14
3.1
15
75
12
51
72
6
19
2
1.17
121561--121645
11
7.2
11
72
22
66
31
36
3
28
1.74
121559--121662
36
2.9
36
95
1
183
30
36
3
28
1.75
127378--127439
27
2.2
28
78
13
74
8
17
14
59
1.58
133072--133193
17
7.1
17
73
9
77
38
11
8
41
1.71
134882--134994
36
3.2
36
92
1
174
32
36
3
27
1.74
134882--134980
13
8.3
11
71
23
67
31
36
3
29
1.73
134894--135033
36
4.1
33
83
9
97
30
36
2
30
1.72
139371--139488
36
3.3
36
91
1
175
32
35
3
28
1.74
139376--139474
13
8.3
11
71
23
67
31
36
3
29
1.73
139388--139527
36
4.1
33
83
9
97
30
36
2
30
1.72

Tables:   1

The End!