genome.fa.s8697.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008697.1 Hibiscus syriacus cultivar Beakdansim tig00111727_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  196991

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2234--2278	22	2.1	21	84	12	56	44	35	2	17	1.62
2598--2640	18	2.3	18	92	8	68	79	2	16	2	0.95
12894--12962	33	2.1	33	83	5	86	31	1	36	30	1.67
12933--13047	38	3.2	36	87	6	160	26	3	36	33	1.74
12947--13047	13	8.3	11	69	24	53	28	2	36	31	1.72
14553--14616	33	1.9	33	81	6	76	31	1	34	32	1.68
14587--14696	35	3.2	36	85	7	147	25	3	37	33	1.74
21578--21669	45	2.0	45	81	4	105	25	14	23	36	1.92
24505--24596	35	2.6	35	80	1	103	35	3	30	30	1.74
24937--25162	117	1.9	117	100	0	452	24	16	30	28	1.97
47688--47761	36	2.2	33	80	11	78	14	22	0	62	1.32
54097--54138	22	2.0	21	85	4	57	33	19	4	42	1.72
54420--54444	11	2.3	11	100	0	50	16	36	8	40	1.77
57685--57733	19	2.7	19	81	6	57	77	4	16	2	1.01
64740--64782	20	2.2	20	87	4	61	34	9	6	48	1.62
66967--67021	23	2.3	26	84	15	82	60	10	18	10	1.59
67021--67049	5	6.0	5	92	8	51	79	0	20	0	0.74
69787--69816	13	2.4	13	94	5	53	43	0	30	26	1.55
71671--71801	65	2.0	65	90	0	208	22	25	25	27	2.00
72898--72936	12	3.2	12	85	7	51	74	5	20	0	1.01
74450--74518	33	2.1	33	83	5	86	31	1	36	30	1.67
74504--74600	13	8.0	12	72	22	62	28	3	37	30	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74489--74601	36	3.2	36	92	1	174	27	3	36	32	1.74
78956--79024	33	2.1	33	83	5	86	31	1	36	30	1.67
79010--79074	13	5.4	12	75	21	57	29	3	35	32	1.73
78995--79107	36	3.2	36	91	1	165	27	4	36	31	1.77
81094--81162	33	2.1	33	83	5	86	31	1	36	30	1.67
81148--81244	13	8.0	12	72	22	62	28	3	37	30	1.73
81133--81245	36	3.2	36	92	1	174	27	3	36	32	1.74
84604--84650	14	3.3	15	74	17	55	2	17	2	78	0.94
85052--85120	33	2.1	33	83	5	86	31	1	36	30	1.67
85106--85202	13	8.0	12	72	22	62	28	3	37	30	1.73
85091--85203	36	3.2	36	92	1	174	27	3	36	32	1.74
90311--90358	21	2.3	21	100	0	96	47	14	14	22	1.81
92085--92197	36	3.2	36	92	1	174	32	36	3	27	1.74
92085--92183	13	8.3	11	71	23	67	31	36	3	29	1.73
92097--92236	36	4.1	33	83	9	97	30	36	2	30	1.72
94561--94604	22	2.0	21	86	4	61	38	34	2	25	1.68
94923--94977	13	4.2	12	78	17	56	76	3	16	3	1.07
94955--94994	19	2.1	19	86	9	55	77	0	12	10	0.99
98946--98989	22	2.0	21	86	4	61	38	34	2	25	1.68
101239--101302	17	3.7	17	69	22	53	78	3	15	3	1.01
101239--101303	26	2.5	25	77	20	71	76	3	15	4	1.07
104310--104382	32	2.3	32	100	0	146	31	16	21	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106095--106135	18	2.3	19	79	12	50	0	14	7	78	0.96
106495--106541	23	2.0	24	84	12	62	34	0	36	29	1.58
106561--106588	14	2.0	14	100	0	56	35	0	42	21	1.53
108586--108668	35	2.3	36	79	4	96	30	36	2	31	1.71
109045--109092	26	2.0	23	84	12	60	75	8	16	0	1.04
109114--109160	14	3.1	15	75	12	51	72	6	19	2	1.17
112966--113048	35	2.3	36	79	4	96	30	36	2	31	1.71
115452--115520	35	1.9	36	85	2	95	30	34	2	31	1.73
122430--122477	24	2.0	25	83	4	62	12	25	12	50	1.75
123978--124006	15	2.0	15	93	6	51	0	20	3	75	0.94
129713--129741	5	6.0	5	92	8	51	0	17	0	82	0.66
131130--131161	16	2.0	16	100	0	64	43	6	18	31	1.75
133843--134016	23	7.3	23	68	23	87	31	36	4	28	1.76
133843--133999	11	13.2	11	70	23	97	31	36	3	28	1.75
133841--134016	36	4.9	36	94	0	300	31	36	3	28	1.76
134834--134914	35	2.3	35	80	14	96	29	2	37	30	1.71
140471--140539	33	2.1	33	86	5	95	31	0	36	31	1.58
146323--146365	23	1.9	21	81	13	50	34	13	18	32	1.90
150345--150387	23	1.9	21	81	13	50	34	13	18	32	1.90
157307--157357	20	2.6	20	90	3	77	35	15	5	43	1.71
158063--158115	19	2.8	18	76	23	56	77	3	18	0	0.92
158070--158118	11	4.5	11	82	14	50	77	2	20	0	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158064--158118	18	3.1	17	85	15	67	78	1	20	0	0.85
161516--161566	20	2.6	20	90	3	77	35	15	5	43	1.71
164210--164243	16	2.1	16	89	10	52	0	20	0	79	0.73
165445--165596	76	2.0	76	100	0	304	25	19	27	27	1.99
165817--165885	33	2.1	33	83	5	86	31	1	36	30	1.67
165870--166004	13	11.3	11	71	23	87	28	3	36	31	1.75
165887--165990	23	4.4	23	65	27	65	28	4	36	29	1.78
165856--166004	36	4.2	36	94	0	246	27	4	36	32	1.76
166343--166393	19	2.6	20	87	3	68	45	5	15	33	1.71
167765--167833	33	2.1	33	86	5	95	31	0	36	31	1.58
173433--173501	33	2.1	33	83	5	86	31	1	36	30	1.67
175872--175897	5	5.2	5	100	0	52	0	19	0	80	0.71
180253--180296	22	2.0	21	86	4	61	38	34	2	25	1.68
182121--182167	23	2.0	24	84	12	62	34	0	36	29	1.58
182178--182214	14	2.7	14	91	4	58	35	0	40	24	1.55
191277--191309	13	2.6	13	95	4	59	27	30	0	42	1.56
196299--196348	19	2.6	19	93	0	82	34	16	6	44	1.72

Tables:   1

The End!