genome.fa.s87.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000087.1 Hibiscus syriacus cultivar Beakdansim tig00000159_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110087

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5117--5514	53	7.5	55	74	12	216	23	24	19	32	1.97
5132--5529	51	7.5	53	79	8	361	24	24	19	32	1.98
5148--5525	206	1.8	212	84	7	531	24	24	18	32	1.97
7518--7563	10	4.7	10	87	12	69	19	0	0	80	0.71
7517--7564	16	2.9	16	82	14	62	20	0	0	79	0.74
12616--12690	36	2.1	36	90	5	116	24	24	14	37	1.93
13545--13969	106	4.0	106	90	0	643	35	24	18	22	1.96
15711--15748	16	2.5	15	84	12	51	18	13	0	68	1.21
27711--28463	54	14.1	54	87	2	991	21	25	20	31	1.98
27711--28463	213	3.5	213	91	1	1107	21	25	20	31	1.98
28464--28534	37	1.9	37	91	0	115	21	15	18	45	1.86
29571--29677	18	5.6	19	75	13	69	7	14	0	77	0.97
29590--29824	26	9.0	25	78	13	169	7	16	0	75	1.02
29753--29808	20	2.6	22	88	8	80	8	12	0	78	0.96
29774--29818	10	4.5	10	79	20	58	8	8	0	82	0.85
29588--29817	19	12.3	19	76	20	154	7	16	0	76	1.01
29589--29806	7	32.7	7	75	18	166	7	16	0	75	1.02
33273--33300	13	2.2	13	100	0	56	28	0	0	71	0.86
35083--35142	31	1.9	31	86	0	84	58	10	5	26	1.51
37713--37795	21	4.0	21	71	6	69	32	24	18	25	1.97
37783--37874	20	4.6	20	83	5	73	38	27	17	17	1.92
37783--38052	40	6.7	40	81	8	246	36	25	17	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37821--38052	20	11.6	20	83	4	279	35	25	17	21	1.95
37822--38052	121	1.9	121	86	3	331	35	25	17	21	1.95
37842--38034	101	1.9	101	89	2	298	34	25	18	21	1.96
38715--38761	24	2.0	24	87	8	69	25	14	21	38	1.92
41235--41448	33	6.2	33	77	15	145	45	18	22	13	1.84
41249--41472	53	4.2	53	86	5	244	45	17	22	14	1.85
41321--41375	14	3.6	14	73	21	56	45	20	23	10	1.82
41227--41448	86	2.6	86	94	2	383	45	18	22	13	1.84
41462--41578	52	2.2	52	95	4	209	13	24	17	43	1.86
41481--41578	19	5.4	19	82	15	127	14	23	17	44	1.85
43632--43785	19	8.6	18	70	18	99	44	23	20	11	1.84
43632--43785	33	4.3	39	83	9	120	44	23	20	11	1.84
43707--43763	14	3.7	14	75	20	51	43	22	22	10	1.84
43688--43780	33	2.8	33	93	0	159	45	22	21	10	1.83
43797--43869	14	4.9	14	76	15	65	6	17	27	47	1.73
43781--43853	33	2.2	33	95	0	128	6	15	30	47	1.71
43781--43839	19	3.4	19	75	22	74	6	13	30	49	1.68
45798--45894	20	5.2	20	72	18	100	46	17	24	11	1.81
45796--45860	21	3.1	21	82	4	96	47	15	26	10	1.78
45845--45901	14	3.7	14	75	20	60	43	22	24	8	1.81
45796--45918	33	3.5	33	90	8	165	46	18	24	10	1.81
45919--46027	19	5.8	19	73	16	75	11	20	20	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45962--46038	21	3.7	21	81	6	102	12	22	16	48	1.80
46118--46188	33	2.2	33	94	0	124	47	16	23	11	1.79
46568--46722	20	7.7	20	86	4	231	21	20	27	31	1.98
46567--46760	40	4.8	40	84	4	230	19	19	26	34	1.96
46568--46760	60	3.2	59	83	5	226	19	19	26	34	1.96
47381--47420	3	13.3	3	94	0	71	35	0	0	65	0.93
52332--52378	2	23.5	2	95	0	85	46	0	2	51	1.13
55862--55967	18	5.8	18	78	9	90	71	0	22	5	1.06
55891--55927	10	3.9	10	82	13	51	70	0	18	10	1.16
55883--55936	8	6.4	8	78	19	56	72	0	18	9	1.11
55889--55984	18	5.2	19	76	16	78	75	0	17	7	1.03
57280--58233	54	17.6	54	81	3	961	32	20	24	22	1.98
57443--58243	377	2.1	378	82	3	975	32	21	24	21	1.98
59586--59630	22	1.9	23	86	13	65	33	24	22	20	1.97
60335--60379	22	1.9	23	86	13	65	33	24	22	20	1.97
59280--61279	748	2.7	749	99	0	3966	28	17	20	34	1.95
61083--61127	22	1.9	23	86	13	65	33	24	22	20	1.97
62794--62823	2	15.0	2	92	0	51	50	3	0	46	1.18
64724--64753	15	2.0	15	100	0	60	46	6	40	6	1.56
66264--66324	6	9.8	6	74	13	52	78	0	21	0	0.75
66271--66340	27	2.7	27	87	12	94	78	0	20	1	0.83
66263--66339	15	5.2	15	73	17	54	79	0	19	1	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66271--66332	13	4.8	13	90	9	92	79	0	20	0	0.74
67552--67637	37	2.3	36	86	7	120	43	19	17	19	1.89
67638--68437	54	14.8	54	82	1	861	31	20	25	21	1.98
68615--68664	3	17.0	3	81	4	57	38	4	0	58	1.17
82361--82410	23	2.2	23	92	0	82	24	30	8	38	1.84
90407--90475	24	2.9	24	77	0	75	53	17	10	18	1.71
90440--90496	12	4.8	12	76	6	62	54	17	14	14	1.71
94445--96083	822	2.0	818	90	1	2613	36	20	15	26	1.93
96136--96196	24	2.5	24	81	0	77	50	14	8	26	1.71
101690--101793	24	4.3	24	83	0	118	50	17	8	23	1.73

Tables:   1

The End!