Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000870.1 Hibiscus syriacus cultivar Beakdansim tig00001681_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122411

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4282--4324
21
2.1
20
86
4
59
27
0
25
46
1.53
6779--6830
26
2.0
26
88
3
79
38
19
3
38
1.70
10402--10447
2
23.0
2
100
0
92
50
0
0
50
1.00
14122--14156
17
2.1
17
89
5
54
31
14
2
51
1.57
14985--15021
19
1.9
19
100
0
74
27
5
21
45
1.73
15160--15196
15
2.5
15
95
0
65
70
5
10
13
1.32
18898--18927
15
1.9
16
93
6
53
56
0
0
43
0.99
37271--37298
12
2.3
12
100
0
56
35
7
14
42
1.73
41178--41206
14
2.0
15
93
6
51
51
0
0
48
1.00
41504--41583
25
3.2
25
90
0
124
30
20
16
33
1.94
43182--43242
31
1.9
33
90
6
99
40
6
16
36
1.74
59283--59367
14
6.0
14
76
11
75
27
1
25
45
1.61
63948--64066
59
2.0
61
82
9
147
39
5
21
33
1.77
64299--64350
16
2.8
19
75
22
56
51
5
5
36
1.50
64316--64347
16
1.9
17
93
6
57
59
6
3
31
1.38
65199--65277
23
3.2
24
77
14
81
55
3
0
40
1.18
65220--65309
23
3.8
23
80
8
99
52
3
0
44
1.17
65199--65308
49
2.2
49
90
4
168
54
3
0
41
1.18
65199--65285
26
3.4
26
75
13
92
56
3
0
40
1.16
65222--65307
24
3.5
25
72
23
74
53
3
0
43
1.18
66567--66634
30
2.3
30
86
0
100
29
10
19
41
1.84
68785--68851
30
2.2
30
89
0
98
20
29
17
31
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
75960--76142
86
2.1
86
88
1
267
42
20
7
30
1.78
76322--76383
21
3.0
21
85
0
79
27
6
38
27
1.81
80642--80737
21
4.9
18
75
13
84
23
19
31
25
1.98
81415--81459
22
2.1
22
87
4
65
17
24
31
26
1.97
81511--81559
21
2.5
20
83
9
64
24
10
10
55
1.64
94091--94483
165
2.4
164
80
6
421
48
7
15
28
1.71
94011--94514
156
3.2
155
77
10
532
49
6
16
28
1.70
94724--94768
22
2.0
22
95
0
81
26
33
15
24
1.95
101571--101604
17
2.0
17
88
0
50
29
26
26
17
1.98
105799--105829
2
15.5
2
93
0
53
51
0
0
48
1.00
107459--107546
31
2.9
30
80
8
81
54
7
5
31
1.53
117385--117447
21
3.0
21
83
2
81
38
30
7
23
1.84

Tables:   1

The End!