Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008700.1 Hibiscus syriacus cultivar Beakdansim tig00111733_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112164

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7991--8079
46
1.9
46
88
4
135
37
11
7
43
1.70
12755--12800
25
1.9
23
83
16
58
60
0
2
36
1.09
22402--22437
18
2.0
18
100
0
72
33
5
33
27
1.80
23925--23980
29
1.9
29
88
0
85
35
16
7
41
1.75
29004--29033
15
2.0
15
100
0
60
60
0
20
20
1.37
29007--29041
15
2.3
15
90
0
52
65
0
17
17
1.27
29427--29492
34
1.9
34
93
0
114
31
12
12
43
1.78
30130--30320
105
1.8
103
91
4
312
21
19
25
32
1.97
30892--31197
67
4.5
67
76
9
271
36
11
19
32
1.88
31039--31153
33
3.5
33
89
5
162
32
11
19
37
1.87
31139--31617
102
4.7
102
91
1
766
36
12
19
30
1.89
31139--31611
202
2.3
202
91
2
761
36
12
19
30
1.90
31444--31529
37
2.4
37
84
2
102
40
11
18
29
1.86
32816--33165
183
1.9
183
95
0
637
30
21
21
27
1.98
37051--37080
15
2.0
15
100
0
60
60
0
20
20
1.37
37054--37088
15
2.3
15
90
0
52
65
0
17
17
1.27
37187--37212
9
2.9
9
100
0
52
80
0
19
0
0.71
37482--37547
34
1.9
34
93
0
114
31
10
12
45
1.76
42136--42178
22
1.9
23
85
4
61
62
0
2
34
1.08
55809--55865
28
2.0
28
100
0
114
36
14
24
24
1.92
59482--59554
32
2.3
31
88
4
110
39
20
9
30
1.84
63325--63355
15
2.1
15
93
0
53
54
3
6
35
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68351--68401
25
2.0
25
84
0
66
56
1
1
39
1.22
74197--74566
183
2.0
183
85
5
507
31
27
10
30
1.91
74379--74883
210
2.4
209
83
4
615
29
26
12
30
1.93
74379--74949
210
2.7
210
79
7
514
30
26
13
30
1.93
84290--84316
14
1.9
14
100
0
54
7
7
18
66
1.40
92452--92487
13
2.7
13
95
4
63
0
11
8
80
0.90
92452--92506
16
3.7
15
83
11
60
0
7
10
81
0.86
100693--100737
18
2.6
18
82
6
58
44
0
26
28
1.55
101318--101422
28
3.8
28
84
0
120
47
27
8
16
1.75
106160--106197
2
19.0
2
100
0
76
50
0
0
50
1.00

Tables:   1

The End!