genome.fa.s8701.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008701.1 Hibiscus syriacus cultivar Beakdansim tig00111736_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113026

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2264--2338	39	1.9	39	81	5	89	36	21	14	28	1.93
2341--2374	17	2.0	17	94	0	59	26	26	11	35	1.91
5678--5715	19	2.0	19	94	0	67	36	18	26	18	1.94
6595--6709	57	2.0	58	89	3	178	24	21	21	32	1.98
10528--10563	17	2.0	19	89	10	58	41	11	8	38	1.71
24746--26246	751	2.0	751	97	0	2858	35	18	14	31	1.91
26261--26304	15	2.9	15	78	15	54	77	6	15	0	0.97
26256--26307	16	3.2	17	78	13	56	76	9	13	0	1.01
26262--26310	16	3.1	16	81	18	59	77	6	16	0	0.96
27480--27573	35	2.6	38	81	8	106	28	13	13	43	1.83
27680--27840	65	2.5	65	88	1	232	24	21	14	38	1.92
27893--28247	131	2.7	132	81	6	371	27	30	18	23	1.97
28446--28537	3	30.7	3	95	0	130	27	1	5	66	1.20
29082--29142	20	3.0	21	83	11	74	72	8	16	3	1.23
29102--29142	21	2.0	20	90	4	64	75	4	17	2	1.08
31222--31254	15	2.2	15	94	0	57	57	12	9	21	1.62
31296--31399	33	3.2	33	93	1	174	44	16	7	31	1.76
31394--31435	21	2.0	21	95	0	75	47	7	14	30	1.71
36373--36551	29	6.4	28	70	21	110	41	3	8	46	1.50
36393--36550	30	5.8	28	70	19	104	41	3	7	46	1.50
36373--36573	56	3.6	56	81	8	214	41	2	7	47	1.47
36491--36573	29	2.9	27	71	13	76	40	1	4	53	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36738--36795	27	2.1	29	80	6	66	44	15	15	24	1.85
39014--39055	21	2.0	21	95	0	75	30	14	7	47	1.71
39050--39153	33	3.2	33	90	1	165	35	7	12	44	1.71
39346--39387	21	2.0	22	85	4	59	38	23	21	16	1.93
40677--40714	15	2.5	15	95	0	67	31	26	7	34	1.85
42690--42716	14	1.9	14	100	0	54	29	0	7	62	1.22
51355--51913	44	12.9	42	86	2	429	35	23	22	18	1.96
51433--51912	44	11.0	44	87	1	619	35	23	22	17	1.95
52395--52531	10	13.2	10	69	20	61	76	5	5	12	1.13
52395--52475	5	15.8	5	75	17	60	77	4	3	13	1.06
52357--52474	48	2.4	50	83	11	136	74	5	5	15	1.17
52398--52513	37	3.1	37	78	14	116	76	5	5	12	1.12
52398--52481	38	2.3	37	83	8	109	76	4	4	14	1.12
52577--52620	2	23.0	2	82	17	58	52	0	2	45	1.13
52574--52625	19	2.5	20	81	12	70	53	0	1	44	1.11
52568--52631	15	4.6	14	78	19	64	57	0	1	40	1.08
52939--52973	3	11.7	3	100	0	70	68	0	0	31	0.90
61019--61052	14	2.4	14	85	14	52	76	0	5	17	0.98
61016--61199	22	8.1	21	67	18	77	76	4	5	13	1.14
61016--61126	9	11.8	9	73	14	64	79	2	5	12	1.01
61161--61202	18	2.3	19	88	12	70	80	0	2	16	0.81
61161--61202	12	3.5	12	90	6	59	80	0	2	16	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61187--61248	30	2.1	29	88	8	90	61	1	4	32	1.27
61232--61271	2	21.0	2	90	10	66	52	0	0	47	1.00
61206--61282	12	6.2	12	73	20	54	57	1	1	40	1.15
61644--61707	3	21.7	3	76	17	55	70	3	1	25	1.11
61747--61806	8	7.8	8	83	7	61	58	0	0	41	0.98
61742--61790	2	25.0	2	91	4	82	51	0	0	48	1.00
61827--61866	18	2.2	18	86	8	55	75	2	0	22	0.93
61790--61901	52	2.2	53	80	7	131	68	3	4	23	1.23
61845--61907	31	2.1	30	82	8	76	66	1	3	28	1.16
62927--62990	2	34.0	2	79	17	75	51	0	1	46	1.10
62928--62980	23	2.2	25	90	6	83	50	0	0	49	1.00
62927--62990	25	2.5	25	85	10	85	51	0	1	46	1.10
62929--62990	18	3.5	18	86	6	83	51	0	1	46	1.10
67534--68088	129	4.3	129	80	4	555	32	21	16	28	1.95
67630--67824	41	4.6	41	70	12	133	33	21	17	27	1.96
67972--68170	83	2.4	83	86	0	274	35	19	19	25	1.95
67975--68129	41	3.8	41	68	5	123	36	19	20	24	1.95
68025--68163	41	3.4	41	71	5	118	37	18	17	25	1.93
68191--68298	41	2.7	41	78	4	112	32	22	17	27	1.96
68494--68535	21	2.0	21	86	9	59	50	0	11	38	1.40
68526--68652	30	4.1	31	78	12	118	44	3	5	45	1.45
68679--68717	10	3.8	10	83	6	51	17	10	0	71	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69556--69632	37	2.1	38	85	9	106	45	2	5	46	1.39
76565--76684	17	6.9	17	75	7	107	33	11	10	44	1.76
76597--76684	35	2.5	35	92	0	140	34	11	12	42	1.79
78378--79090	114	6.3	114	81	3	785	38	13	8	38	1.76
79772--79841	21	3.3	20	86	7	95	41	21	17	20	1.90
80738--80788	19	2.7	19	85	8	70	25	15	35	23	1.94
80632--80839	65	3.2	64	81	13	230	27	17	25	29	1.97
87244--87283	21	1.9	21	85	10	55	35	10	2	52	1.48
89190--89370	64	2.8	63	83	3	218	27	17	26	29	1.97
89318--89368	19	2.7	19	85	8	70	25	15	35	23	1.94
89211--89370	65	2.5	65	86	3	216	27	16	26	30	1.97
91669--91701	2	16.5	2	100	0	66	48	0	0	51	1.00
92420--92455	17	2.1	17	89	0	54	33	2	22	41	1.68
93907--93954	23	2.0	25	84	11	66	58	4	0	37	1.18
96915--96985	36	2.0	36	97	0	133	28	19	25	26	1.99
100588--100727	69	2.0	71	94	5	250	29	31	11	27	1.91
102367--102496	39	3.3	39	86	6	156	32	18	26	22	1.97
103403--103477	26	2.8	26	70	11	62	22	16	21	40	1.91
110025--110090	30	2.2	29	94	2	114	33	15	27	24	1.95

Tables:   1

The End!