Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008702.1 Hibiscus syriacus cultivar Beakdansim tig00111741_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3201804
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 14
Found at i:742 original size:15 final size:16
Alignment explanation
Indices: 712--743 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
702 ATTTAGTCAG
712 TTATTTTATATGTTTT
1 TTATTTTATATGTTTT
728 TTATTTTAT-TGTTTT
1 TTATTTTATATGTTTT
743 T
1 T
744 AAATATATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.16, C:0.00, G:0.06, T:0.78
Consensus pattern (16 bp):
TTATTTTATATGTTTT
Found at i:12391 original size:18 final size:17
Alignment explanation
Indices: 12353--12397 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 17
12343 CTATTTCAAG
*
12353 TTCAATTTA-TTTGAGA
1 TTCAATTTATTTTGAAA
12369 TTCAATTTATTTTGGAAA
1 TTCAATTTATTTT-GAAA
12387 TTCAATTTATT
1 TTCAATTTATT
12398 CTTTTCCATT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
16 9 0.35
17 3 0.12
18 14 0.54
ACGTcount: A:0.31, C:0.07, G:0.09, T:0.53
Consensus pattern (17 bp):
TTCAATTTATTTTGAAA
Found at i:13389 original size:133 final size:133
Alignment explanation
Indices: 13151--13394 Score: 461
Period size: 133 Copynumber: 1.8 Consensus size: 133
13141 AAACATTAAA
13151 TGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGAC
1 TGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGAC
*
13216 AGAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATTGA
66 AGAATAGCATCTTCTGGAAGTGTTCTTTGAATTATCTGATCTGGTTTGGCAGAACCAATCATTGA
13281 ATT
131 ATT
* *
13284 TGGAAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGAC
1 TGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGAC
13349 AGAATAGCATCTTCTGGAAGTGTTCTTTGAATTATCTGATCTGGTT
66 AGAATAGCATCTTCTGGAAGTGTTCTTTGAATTATCTGATCTGGTT
13395 ATACAGAATA
Statistics
Matches: 108, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
133 108 1.00
ACGTcount: A:0.25, C:0.14, G:0.23, T:0.38
Consensus pattern (133 bp):
TGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGAC
AGAATAGCATCTTCTGGAAGTGTTCTTTGAATTATCTGATCTGGTTTGGCAGAACCAATCATTGA
ATT
Found at i:13502 original size:50 final size:50
Alignment explanation
Indices: 13301--13494 Score: 370
Period size: 50 Copynumber: 3.9 Consensus size: 50
13291 TGAATTTGCT
13301 AATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGACAG
1 AATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGACAG
* *
13351 AATAGCATCTTCTGGAAGTGTTCTTTGAATTATCTGATCTGGTTATACAG
1 AATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGACAG
13401 AATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGACAG
1 AATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGACAG
13451 AATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTT
1 AATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTT
13495 TGGCAGAACC
Statistics
Matches: 140, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
50 140 1.00
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.40
Consensus pattern (50 bp):
AATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTAGACAG
Found at i:14436 original size:113 final size:113
Alignment explanation
Indices: 14231--15230 Score: 1493
Period size: 113 Copynumber: 8.9 Consensus size: 113
14221 TCAAATCCAC
* * * *
14231 TTGATGGATCATTCATTACCAGA-TAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGGAG
1 TTGATGGATCA-TCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAG
* * * *** *
14295 AAGTTCATAATGAGAAGAACTAGTTCAACTTTTTGTTTAAATTCATCAT
65 AAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTGAATTCATCAT
* *
14344 TTGGTGAATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
1 TTGATGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
* * *** *
14409 AGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTTAAATTCATCAT
66 AGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTGAATTCATCAT
* * * *
14457 TTGATGGATCAACATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
1 TTGATGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
* *
14522 AATTCATAATGAGAAGAATTTGTTCAACCTTTTACCTGAATCCATCAT
66 AGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTGAATTCATCAT
* *
14570 TTGGTGAATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
1 TTGATGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
* * *
14635 AGTTCATAATGAGAAGAATTTGTTCAACCTTTTACTTGAATCCGTCAT
66 AGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTGAATTCATCAT
*
14683 TTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
1 TTGATGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
* * *** *
14748 AGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTTGAATTCATCAC
66 AGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTGAATTCATCAT
14796 TTGATGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
1 TTGATGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
* *
14861 AGTTCATAATGAGAAGAATTTATTCAACCTTTTACCTGAATTCATCAC
66 AGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTGAATTCATCAT
*
14909 TTGATGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAAA
1 TTGATGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
* *
14974 AGTTCATAATGAGAAGAATTTATTCAACCTTTTACCTGAATTCATCAC
66 AGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTGAATTCATCAT
* * *
15022 TTGATGGAACATTTTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
1 TTGATGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
* *
15087 AGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTGAATCCATCAA
66 AGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTGAATTCATCAT
* * * *
15135 TTGATGGATTATCTTTTCCGGAG-AAGTTCATAATGAGAAGGACTCATCTGAAGAAGAAAGAAGA
1 TTGATGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
* *
15199 AGTTCATAATAAGAAGAACTTGTTCAA-CTTTT
66 AGTTCATAATGAGAAGAATTTGTTCAACCTTTT
15231 GGCATAATTC
Statistics
Matches: 822, Mismatches: 64, Indels: 4
0.92 0.07 0.00
Matches are distributed among these distances:
111 5 0.01
112 73 0.09
113 744 0.91
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.30
Consensus pattern (113 bp):
TTGATGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
AGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTGAATTCATCAT
Found at i:15556 original size:3 final size:3
Alignment explanation
Indices: 15548--15668 Score: 190
Period size: 3 Copynumber: 40.7 Consensus size: 3
15538 TTTTTATCCA
* *
15548 TAT TAT TAT TAA TAT TAT TAT TAT TAT TAT TAT TAT TAT TAC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
15596 CAT TAT TAT TAT TAT TAT TAT TAT TA- TAT TAC TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
15643 TAT TAT TAT TAT TAC TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
15669 AATATATTAA
Statistics
Matches: 107, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
2 2 0.02
3 105 0.98
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:15710 original size:20 final size:19
Alignment explanation
Indices: 15668--15711 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
15658 TATTATTATT
* * *
15668 AAATATATTAAATACATAT
1 AAATATATTAAAAACAAAC
15687 AAATATTATTAAAAACAAAC
1 AAATA-TATTAAAAACAAAC
15707 AAATA
1 AAATA
15712 ATAAAAAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.30
Consensus pattern (19 bp):
AAATATATTAAAAACAAAC
Found at i:39728 original size:11 final size:11
Alignment explanation
Indices: 39708--39774 Score: 61
Period size: 11 Copynumber: 6.4 Consensus size: 11
39698 TTTTAAAATT
39708 AAAT-TATTAA
1 AAATATATTAA
39718 AAATATATTAA
1 AAATATATTAA
* *
39729 AAATACATTAT
1 AAATATATTAA
**
39740 TGATA-ATTATA
1 AAATATATTA-A
39751 AAAT-T-TTAA
1 AAATATATTAA
39760 AAATATATTAA
1 AAATATATTAA
39771 AAAT
1 AAAT
39775 TTTATAATAC
Statistics
Matches: 45, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
9 5 0.11
10 12 0.27
11 28 0.62
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.39
Consensus pattern (11 bp):
AAATATATTAA
Found at i:39775 original size:20 final size:20
Alignment explanation
Indices: 39708--39778 Score: 63
Period size: 20 Copynumber: 3.4 Consensus size: 20
39698 TTTTAAAATT
39708 AAATTATTAAAAATATATTAA
1 AAATT-TTAAAAATATATTAA
* ***
39729 AAATACATTATTGATA-ATTATA
1 AAAT--TTTAAAAATATATTA-A
39751 AAATTTTAAAAATATATTAA
1 AAATTTTAAAAATATATTAA
39771 AAATTTTA
1 AAATTTTA
39779 TAATACAACT
Statistics
Matches: 38, Mismatches: 8, Indels: 9
0.69 0.15 0.16
Matches are distributed among these distances:
20 15 0.39
21 12 0.32
22 11 0.29
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.41
Consensus pattern (20 bp):
AAATTTTAAAAATATATTAA
Found at i:55967 original size:19 final size:19
Alignment explanation
Indices: 55892--55962 Score: 115
Period size: 19 Copynumber: 3.7 Consensus size: 19
55882 GCGATTGTAA
*
55892 AAAATGTGTTGCGATAATT
1 AAAATGTATTGCGATAATT
55911 AAAATGTATTGCGATAATT
1 AAAATGTATTGCGATAATT
*
55930 AAAATGTATTGCGATAGTT
1 AAAATGTATTGCGATAATT
*
55949 AAAATGTGTTGCGA
1 AAAATGTATTGCGA
55963 GAGTTTAAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 49 1.00
ACGTcount: A:0.38, C:0.06, G:0.21, T:0.35
Consensus pattern (19 bp):
AAAATGTATTGCGATAATT
Found at i:56545 original size:19 final size:20
Alignment explanation
Indices: 56486--56559 Score: 105
Period size: 21 Copynumber: 3.6 Consensus size: 20
56476 TCAGAATCGC
*
56486 ATCGCGTTGCGATTCTGTATT
1 ATCGCATTGCGATT-TGTATT
*
56507 ATCGCGTTGCGATTTTGTATT
1 ATCGCATTGCGA-TTTGTATT
56528 ATCGCATTGCGA-TTGTATT
1 ATCGCATTGCGATTTGTATT
56547 ATCGCATTGCGAT
1 ATCGCATTGCGAT
56560 AGTCAGAATC
Statistics
Matches: 50, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
19 19 0.38
21 29 0.58
22 2 0.04
ACGTcount: A:0.18, C:0.18, G:0.23, T:0.42
Consensus pattern (20 bp):
ATCGCATTGCGATTTGTATT
Found at i:57248 original size:182 final size:181
Alignment explanation
Indices: 56881--57660 Score: 1039
Period size: 182 Copynumber: 4.3 Consensus size: 181
56871 ATCTATACAA
* * * * * * *
56881 ATAAAAATGTATCGATCCATAATAGTATAACAGGTAAAAATATTATAAAACCAGTTTCATTATAA
1 ATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAA-CTGTATCATTATGA
* * *** * * * * *
56946 CAAAACCGATAAAGTGCTACATAATATGTTGAACGTATCGATTCCATTGAA-ATAAATATCGATA
65 CAAAACCGGTAAAGCGCTACCGGATATGTTGAAAGTGTCGA-TAC-TTTAATATAAATATCGACA
* * *
57010 CTTTTGGAATTTAAAAGAGAAACAATAATAACGCCTATAA-AGTGTCGATACTTT
128 CTTTTGGAATTTAAAAGAGAAGCAGTAATAGCGCCTATAATA-TGTCGATACTTT
*
57064 ATAAAAATGTATCGATCCATAACAATATAACATGTAAAAATATGACAAAATCTGTATCATTATGA
1 ATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAA-CTGTATCATTATGA
* * * * *
57129 CAAAATCGGTAAAGCGCTACCGGATATGTTAAAATTGTCGATATTTTAATATAAATATCGACATT
65 CAAAACCGGTAAAGCGCTACCGGATATGTTGAAAGTGTCGATACTTTAATATAAATATCGACACT
*
57194 TTTGGAATTTAAAAGAGAAGCAGTAATAGCCCCTATAATATGTCGATACTTT
130 TTTGGAATTTAAAAGAGAAGCAGTAATAGCGCCTATAATATGTCGATACTTT
57246 ATAAAAATGTATCGATCCATAACAATATAACAGAG-AAAAATATGACAAAACATGTATCATTATG
1 ATAAAAATGTATCGATCCATAACAATATAACAG-GTAAAAATATGACAAAAC-TGTATCATTATG
* * * * * *
57310 ACAAAACCAGTAAATCACTACCAGATATATTGAAAGTGTTGATACTTTAATA-AAAGTATCGACA
64 ACAAAACCGGTAAAGCGCTACCGGATATGTTGAAAGTGTCGATACTTTAATATAAA-TATCGACA
*
57374 CTTTTGGAATTTAAAAGAGAAGCAGTAATAGCGCCTATAATGTGTCGATACTTT
128 CTTTTGGAATTTAAAAGAGAAGCAGTAATAGCGCCTATAATATGTCGATACTTT
* *
57428 ATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACTGGTCTCGA-AATG
1 ATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACT-GTATC-ATTATG
* * * *
57492 ATAAAATCGGTAAAGCGCTACCGGATATGTTGAAAGTGTCGATACTTTAATATAAGTATCAACAC
64 ACAAAACCGGTAAAGCGCTACCGGATATGTTGAAAGTGTCGATACTTTAATATAAATATCGACAC
* * *
57557 TTTTGGAATTTAAAAGTGAAGCAGTACTAGCGCCTATAATGTGTCGATACTTT
129 TTTTGGAATTTAAAAGAGAAGCAGTAATAGCGCCTATAATATGTCGATACTTT
*
57610 ATAAAAATGTATCGATCCATAACAATATAACATGTAAAAATATGACAAAAC
1 ATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAAC
57661 CGGTAAAGCG
Statistics
Matches: 531, Mismatches: 57, Indels: 19
0.87 0.09 0.03
Matches are distributed among these distances:
181 10 0.02
182 429 0.81
183 92 0.17
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (181 bp):
ATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACTGTATCATTATGAC
AAAACCGGTAAAGCGCTACCGGATATGTTGAAAGTGTCGATACTTTAATATAAATATCGACACTT
TTGGAATTTAAAAGAGAAGCAGTAATAGCGCCTATAATATGTCGATACTTT
Found at i:59421 original size:15 final size:15
Alignment explanation
Indices: 59401--59429 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
59391 TGGTGGTAGG
59401 GGGATGACGGTGAGA
1 GGGATGACGGTGAGA
59416 GGGATGACGGTGAG
1 GGGATGACGGTGAG
59430 GGAAAACTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.07, G:0.55, T:0.14
Consensus pattern (15 bp):
GGGATGACGGTGAGA
Found at i:59432 original size:13 final size:14
Alignment explanation
Indices: 59395--59432 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
59385 AAGAGATGGT
*
59395 GGTAGGGGGATGAC
1 GGTAGAGGGATGAC
59409 GGTGAGAGGGATGAC
1 GGT-AGAGGGATGAC
59424 GGT-GAGGGA
1 GGTAGAGGGA
59433 AAACTGAGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 6 0.27
14 3 0.14
15 13 0.59
ACGTcount: A:0.24, C:0.05, G:0.58, T:0.13
Consensus pattern (14 bp):
GGTAGAGGGATGAC
Found at i:59681 original size:66 final size:66
Alignment explanation
Indices: 59550--59681 Score: 183
Period size: 66 Copynumber: 2.0 Consensus size: 66
59540 AAAGGGAAAG
* * * *
59550 TGGGTGGAAAAATAGATGGAGTGGTGAAAGAAGTTGTGGAGTTGAGGGGTGAAGTTAATATGGTG
1 TGGGTGGAAAAATAGATGGAGTGATGAAAGAAGTTGTGGAGTTGAGGGGTGAACTTAAGAGGGTG
59615 A
66 A
* * * * *
59616 TGGGTGGAAAAATTGATGGAGTGATGAAGGAAGTTGTGGATTTGAGGGGTGAACTTACGGGGGTG
1 TGGGTGGAAAAATAGATGGAGTGATGAAAGAAGTTGTGGAGTTGAGGGGTGAACTTAAGAGGGTG
59681 A
66 A
59682 AGGGAGTGGT
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
66 57 1.00
ACGTcount: A:0.30, C:0.02, G:0.43, T:0.26
Consensus pattern (66 bp):
TGGGTGGAAAAATAGATGGAGTGATGAAAGAAGTTGTGGAGTTGAGGGGTGAACTTAAGAGGGTG
A
Found at i:59811 original size:18 final size:18
Alignment explanation
Indices: 59775--59813 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
59765 AAAATATGAA
*
59775 GAAGAAGAAAAGACGGAG
1 GAAGAAGAAAAGACAGAG
*
59793 GAAGAAGAAAAGATAGAG
1 GAAGAAGAAAAGACAGAG
59811 GAA
1 GAA
59814 ATGAGGAGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.59, C:0.03, G:0.36, T:0.03
Consensus pattern (18 bp):
GAAGAAGAAAAGACAGAG
Found at i:60841 original size:9 final size:9
Alignment explanation
Indices: 60795--60819 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
60785 GTATGAAAGG
60795 AAATTATGT
1 AAATTATGT
60804 AAATTATGT
1 AAATTATGT
60813 AAATTAT
1 AAATTAT
60820 AATGCATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (9 bp):
AAATTATGT
Found at i:64664 original size:209 final size:201
Alignment explanation
Indices: 64303--64856 Score: 781
Period size: 201 Copynumber: 2.7 Consensus size: 201
64293 GTGCAGGCAT
** ** *
64303 AAAGTATCGATGCCAAAAACATCG-AACACGATAATTATAATGTAATAGGTTTCA-TGACAATGT
1 AAAGTATCGACCCCAAAAACATCGAAAC-CGATAATTATAATGTAATAGG-TAAATTTACAATGT
* * **
64366 AACGGGTATAAAAATATTGGTTTAATTATAAAATAGGTCAACATAATGTATCGACACTTTTTAAA
64 AACCGGTATAAATATATCAGTTTAATTATAAAATAGGTCAACATAATGTATCGACACTTTTTAAA
*
64431 TTTGTGTCGATACTTTTTGTCCAGAATGAATGCCCAAAGCCCCAAACGAGGTGCACGCATAAAGT
129 TTTGTGTCGATACTTTTTGTCC---A-GAAT---CAAAG-CCCAAACGAGCTGCACGCATAAAGT
*
64496 GTCGATACATTT-TCTA
186 GTCGATACATTTGT-AA
* *
64512 TAAGTATCGACCCCAAAAACATCGAAACCAATAATTATAATGTAATAGGTAAATTTACAATGTAA
1 AAAGTATCGACCCCAAAAACATCGAAACCGATAATTATAATGTAATAGGTAAATTTACAATGTAA
** *
64577 CCGGTATAAATATATCAGTTTAATTATAAAAGCGATCAACATAATGTATCGACACTTTTTAAATT
66 CCGGTATAAATATATCAGTTTAATTATAAAATAGGTCAACATAATGTATCGACACTTTTTAAATT
*
64642 TGTGTCGATACTTTTTGTCCAGAATCAACGCCCAAACGAGCTGCACGCATAAAGTGTCGATACAT
131 TGTGTCGATACTTTTTGTCCAGAATCAAAGCCCAAACGAGCTGCACGCATAAAGTGTCGATACAT
64707 TTGTAA
196 TTGTAA
* **
64713 AAAGTATCGACCCCAAAAACATCAAAACCGATAATTATAATGTAATATATAAATTTACAATGTAA
1 AAAGTATCGACCCCAAAAACATCGAAACCGATAATTATAATGTAATAGGTAAATTTACAATGTAA
* * *
64778 CCGGTATAAATATACCAGTTTAATTAGAAAATAGGTCAACATAATATATCGACACTTTTTAAATT
66 CCGGTATAAATATATCAGTTTAATTATAAAATAGGTCAACATAATGTATCGACACTTTTTAAATT
64843 TGTGTCGATACTTT
131 TGTGTCGATACTTT
64857 ATTAAATTAC
Statistics
Matches: 314, Mismatches: 28, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
201 170 0.54
202 5 0.02
205 4 0.01
206 1 0.00
208 2 0.01
209 129 0.41
210 3 0.01
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (201 bp):
AAAGTATCGACCCCAAAAACATCGAAACCGATAATTATAATGTAATAGGTAAATTTACAATGTAA
CCGGTATAAATATATCAGTTTAATTATAAAATAGGTCAACATAATGTATCGACACTTTTTAAATT
TGTGTCGATACTTTTTGTCCAGAATCAAAGCCCAAACGAGCTGCACGCATAAAGTGTCGATACAT
TTGTAA
Found at i:65495 original size:2 final size:2
Alignment explanation
Indices: 65488--65513 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
65478 ATGGGGAATG
65488 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
65514 CTCCGGAGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:69730 original size:199 final size:198
Alignment explanation
Indices: 69118--70261 Score: 1508
Period size: 199 Copynumber: 5.7 Consensus size: 198
69108 AATATGTAAA
* *
69118 CATAAAGTGTCGATACATTTTTCAAAA-GTATCGACCCCAAAAACATCAAAACCTATAATTATAA
1 CATAAAGTGTCGATACA--TTT-AAAATGTATCGACCCCAAAAACATCGAAACCGATAATTATAA
* * * *
69182 TGTAATAGGTAAATTTACAATGTAACCGGTAGAAACATACCGGTTTAATTAGAAAACATGTCAAC
63 TGTAATAGGTAAATTTACAATGTAACCGGTAGAAATATACCAGTTTAATTAGAAAATAGGTCAAC
* **
69247 ATAATGTATCGACACTTGTGGAATTTGTGTCGATACTTTTTGTT-CAGAATGAATGCCCAAACGA
128 ATAATGTATCGACACTTTTTAAATTTGTGTCGATACTTTTT-TTCCAGAATGAATGCCC-AACGA
*
69311 GGTGCACA
191 GGTGCACG
* * *
69319 CATAAAGTGTCGATACATTTTTCAAAA-GCATTGACCCCAAAAACATCGAAACCGATAACTATAA
1 CATAAAGTGTCGATACA--TTT-AAAATGTATCGACCCCAAAAACATCGAAACCGATAATTATAA
* *
69383 TGTAATATGTAAATTTACAATGTAACCGGTAGAAATATACCGGTTTAATTAGAAAATAGGTCAAC
63 TGTAATAGGTAAATTTACAATGTAACCGGTAGAAATATACCAGTTTAATTAGAAAATAGGTCAAC
* * * * *
69448 ACAATGTATCGACACTTTTTAAATTTGTGTCGATAC-TTTTTTCTAGAACGAATGCCTAATGAGG
128 ATAATGTATCGACACTTTTTAAATTTGTGTCGATACTTTTTTTCCAGAATGAATGCCCAACGAGG
69512 TGCACG
193 TGCACG
* * *
69518 CATAAAGTGTCGATACATTTAAAATTGTATCAATCCCAAAAATATCGAAACCGATAATTATAATG
1 CATAAAGTGTCGATACATTTAAAA-TGTATCGACCCCAAAAACATCGAAACCGATAATTATAATG
* *
69583 TAATAGGTAAATTTGCAATGTAACCGGTATAAATATACCAGTTTAATTAGAAAATAGGTCAACAT
65 TAATAGGTAAATTTACAATGTAACCGGTAGAAATATACCAGTTTAATTAGAAAATAGGTCAACAT
*
69648 ATTGTATCGACACTTTTTAAATTTGTGTCGATACTTTTTTTCCAGAATGAATGCCCAACGAGGTG
130 AATGTATCGACACTTTTTAAATTTGTGTCGATACTTTTTTTCCAGAATGAATGCCCAACGAGGTG
69713 CACG
195 CACG
* * *
69717 CATAAAATGTCGATACATTTAAAATTGTATCGATCCCAAAAACATCGAAACCAATAATTATAATG
1 CATAAAGTGTCGATACATTTAAAA-TGTATCGACCCCAAAAACATCGAAACCGATAATTATAATG
** * ** *
69782 TAATAGGTAAATTTGTAATGTAACCGGTATAAATATACCAGTTTGGTTAGAAAATAGGTCAATAT
65 TAATAGGTAAATTTACAATGTAACCGGTAGAAATATACCAGTTTAATTAGAAAATAGGTCAACAT
* * **
69847 AATGTATCGACACTTTTTAAGTTTGTGTCGATATTTTTTTTCCAGAATGAATAACCAACGAGGTG
130 AATGTATCGACACTTTTTAAATTTGTGTCGATACTTTTTTTCCAGAATGAATGCCCAACGAGGTG
69912 CACG
195 CACG
* * *
69916 CATAAAGTGTCGATACATTTAAAATTGTATCGAACCCGAAAACATCGAAACTGATAATTATAATG
1 CATAAAGTGTCGATACATTTAAAA-TGTATCGACCCCAAAAACATCGAAACCGATAATTATAATG
* * * * * * * *
69981 TAATAGGTAAATTTGCAATGTAATCGATATAAATATATCGGTTTAGTTAGAAAATAGGTCAAAAT
65 TAATAGGTAAATTTACAATGTAACCGGTAGAAATATACCAGTTTAATTAGAAAATAGGTCAACAT
* * * * *
70046 AATGTATCAACACTATTTAAA-TTGTGTCGATACTTTGTGTCCAGAATGAATGCCAAACGAGGTG
130 AATGTATCGACACTTTTTAAATTTGTGTCGATACTTTTTTTCCAGAATGAATGCCCAACGAGGTG
*
70110 CACA
195 CACG
* * * *
70114 CATAAAGTGTCGATACATTTATTAAAAGTATCGACCCCAAAAATATCGAAACCAATAATTATAGT
1 CATAAAGTGTCGATACATTTA--AAATGTATCGACCCCAAAAACATCGAAACCGATAATTATAAT
* * * ** * *
70179 ATAATAGGTAAATTTACAATGTATCCAGTAGAAATATATTAG-TCAATTAGAAAATATGTCAACA
64 GTAATAGGTAAATTTACAATGTAACCGGTAGAAATATACCAGTTTAATTAGAAAATAGGTCAACA
* *
70243 TAATGTATCAACACGTTTT
129 TAATGTATCGACACTTTTT
70262 GATAATGCAC
Statistics
Matches: 846, Mismatches: 91, Indels: 15
0.89 0.10 0.02
Matches are distributed among these distances:
196 4 0.00
197 3 0.00
198 222 0.26
199 447 0.53
200 18 0.02
201 152 0.18
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.31
Consensus pattern (198 bp):
CATAAAGTGTCGATACATTTAAAATGTATCGACCCCAAAAACATCGAAACCGATAATTATAATGT
AATAGGTAAATTTACAATGTAACCGGTAGAAATATACCAGTTTAATTAGAAAATAGGTCAACATA
ATGTATCGACACTTTTTAAATTTGTGTCGATACTTTTTTTCCAGAATGAATGCCCAACGAGGTGC
ACG
Found at i:70536 original size:98 final size:97
Alignment explanation
Indices: 70417--70669 Score: 364
Period size: 87 Copynumber: 2.7 Consensus size: 97
70407 AATCTATTTT
* *
70417 ATTATATAAACGCTACATAATATGTTATTGTACTTGATAATATTTCCGGTTAAATGATATAACAT
1 ATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTTCCGGTTAAATGATATAACAT
70482 AACATATTTTATTATATAAGAGCTACCTATTAC
66 AAC-TATTTTATTATATAAGAGCTACCTATTAC
* *
70515 ATTATATAAGCACTACCTAATATGTTATTGTACTTAATAATATTTCCGGTTAAATG--------T
1 ATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTTCCGGTTAAATGATATAACAT
* *
70572 --CTATTTTATTATATAAGCGCTATCTATTAC
66 AACTATTTTATTATATAAGAGCTACCTATTAC
*
70602 ATTATGTAAGCGCTACCTAATATGTTATTGTACTTGATAATATTTCCGGTTAAATGATATAACAT
1 ATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTTCCGGTTAAATGATATAACAT
70667 AAC
66 AAC
70670 CGATCTACAT
Statistics
Matches: 136, Mismatches: 9, Indels: 21
0.82 0.05 0.13
Matches are distributed among these distances:
87 80 0.59
88 1 0.01
90 1 0.01
95 1 0.01
97 1 0.01
98 52 0.38
ACGTcount: A:0.36, C:0.13, G:0.10, T:0.41
Consensus pattern (97 bp):
ATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTTCCGGTTAAATGATATAACAT
AACTATTTTATTATATAAGAGCTACCTATTAC
Found at i:70542 original size:23 final size:23
Alignment explanation
Indices: 70492--70536 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
70482 AACATATTTT
*
70492 ATTATATAAGAGCTACCTATTAC
1 ATTATATAAGAGCTACCTAATAC
70515 ATTATATAAGCA-CTACCTAATA
1 ATTATATAAG-AGCTACCTAATA
70537 TGTTATTGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.42, C:0.18, G:0.07, T:0.33
Consensus pattern (23 bp):
ATTATATAAGAGCTACCTAATAC
Found at i:70629 original size:23 final size:23
Alignment explanation
Indices: 70579--70623 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
70569 TGTCTATTTT
* *
70579 ATTATATAAGCGCTATCTATTAC
1 ATTATATAAGCGCTACCTAATAC
*
70602 ATTATGTAAGCGCTACCTAATA
1 ATTATATAAGCGCTACCTAATA
70624 TGTTATTGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.36
Consensus pattern (23 bp):
ATTATATAAGCGCTACCTAATAC
Found at i:71036 original size:21 final size:21
Alignment explanation
Indices: 71012--71054 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
71002 AACGAAAGAG
71012 TGACC-AAAATATGAGAGAAAA
1 TGACCAAAAATAT-AGAGAAAA
71033 TGACCAAAAAATATAGAGAAAA
1 TGACC-AAAAATATAGAGAAAA
71055 AAACTCAGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 5 0.25
22 8 0.40
23 7 0.35
ACGTcount: A:0.60, C:0.09, G:0.16, T:0.14
Consensus pattern (21 bp):
TGACCAAAAATATAGAGAAAA
Found at i:71351 original size:6 final size:6
Alignment explanation
Indices: 71340--71390 Score: 102
Period size: 6 Copynumber: 8.5 Consensus size: 6
71330 GACACGTATT
71340 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
71388 ACC
1 ACC
71391 CGAGACGAGA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.33, C:0.51, G:0.16, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:72358 original size:21 final size:21
Alignment explanation
Indices: 72008--72352 Score: 536
Period size: 21 Copynumber: 16.5 Consensus size: 21
71998 TGCGATTTTG
*
72008 GACTATCGCAACGAATTTGGA
1 GACTATCGCAACGAACTTGGA
72029 GACTATCGCAACGAACTTGGA
1 GACTATCGCAACGAACTTGGA
*
72050 GACTATCGTAACGAACTTGGA
1 GACTATCGCAACGAACTTGGA
* *
72071 GACTACCGCAACGAATTTGGA
1 GACTATCGCAACGAACTTGGA
*
72092 GACTATCGCAACGAATTTGGA
1 GACTATCGCAACGAACTTGGA
72113 GACTATCGCAACGAACTTGGA
1 GACTATCGCAACGAACTTGGA
72134 GACTATCGCAACGAACTTGGA
1 GACTATCGCAACGAACTTGGA
72155 GACTATCGCAACGAACTTGGA
1 GACTATCGCAACGAACTTGGA
72176 GACTATCGCAACGAACTTGGA
1 GACTATCGCAACGAACTTGGA
*
72197 GACTATCGCAACGAATTTGGA
1 GACTATCGCAACGAACTTGGA
72218 GACTATCGCAACGAACTTGGA
1 GACTATCGCAACGAACTTGGA
*
72239 GACTATCGCAACGAATTTGGA
1 GACTATCGCAACGAACTTGGA
* *
72260 GATTATCGCAACGAATTTGGA
1 GACTATCGCAACGAACTTGGA
*
72281 GACTATCACAACGAACTTGGA
1 GACTATCGCAACGAACTTGGA
*
72302 GACTATCGCAACGAATTTGGA
1 GACTATCGCAACGAACTTGGA
*
72323 -A-AATCGCAATGCGAACTT-G-
1 GACTATCGCAA--CGAACTTGGA
72342 GACTATCGCAA
1 GACTATCGCAA
72353 TGCGAATATG
Statistics
Matches: 301, Mismatches: 19, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
19 7 0.02
20 3 0.01
21 291 0.97
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.21
Consensus pattern (21 bp):
GACTATCGCAACGAACTTGGA
Found at i:72371 original size:20 final size:20
Alignment explanation
Indices: 72292--72377 Score: 70
Period size: 21 Copynumber: 4.2 Consensus size: 20
72282 ACTATCACAA
72292 CGAACTTGGAGACTATCGCAA--
1 CGAACTTGGA-A--ATCGCAATG
*
72313 CGAATTTGGAAAATCGCAATG
1 CGAACTTGG-AAATCGCAATG
*
72334 CGAACTTGGACTATCGCAATG
1 CGAACTTGGA-AATCGCAATG
*
72355 CGAA-TATGTAAATCGCAATG
1 CGAACT-TGGAAATCGCAATG
72375 CGA
1 CGA
72378 TAGTCGAAGT
Statistics
Matches: 55, Mismatches: 5, Indels: 11
0.77 0.07 0.15
Matches are distributed among these distances:
19 7 0.13
20 14 0.25
21 33 0.60
22 1 0.02
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (20 bp):
CGAACTTGGAAATCGCAATG
Found at i:76460 original size:30 final size:30
Alignment explanation
Indices: 76426--76508 Score: 141
Period size: 30 Copynumber: 2.8 Consensus size: 30
76416 GTGATCCACG
76426 AGGTCGTCGACTGCTCCGAACGATCAATAT
1 AGGTCGTCGACTGCTCCGAACGATCAATAT
76456 AGGTCGTCGACTGCTCCGAACGATCAATAT
1 AGGTCGTCGACTGCTCCGAACGATCAATAT
*
76486 AGGTCGTC-ATGTGCTCCGAACGA
1 AGGTCGTCGA-CTGCTCCGAACGA
76509 CTTCTATAGG
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (30 bp):
AGGTCGTCGACTGCTCCGAACGATCAATAT
Found at i:78079 original size:21 final size:21
Alignment explanation
Indices: 78053--78097 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
78043 CTTTTAAAAA
*
78053 ATCAAAGCAATTCTTGAGCAT
1 ATCAAAGCAATTCTTCAGCAT
78074 ATCAAAGCAATTCTTCAGCAT
1 ATCAAAGCAATTCTTCAGCAT
78095 ATC
1 ATC
78098 TTTTAAGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.29
Consensus pattern (21 bp):
ATCAAAGCAATTCTTCAGCAT
Found at i:84645 original size:19 final size:19
Alignment explanation
Indices: 84621--84657 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
84611 GGAAAAGAAC
84621 TACATTAAAGACCATTAAA
1 TACATTAAAGACCATTAAA
**
84640 TACATTAGGGACCATTAA
1 TACATTAAAGACCATTAA
84658 GCAATAAGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.46, C:0.16, G:0.11, T:0.27
Consensus pattern (19 bp):
TACATTAAAGACCATTAAA
Found at i:88893 original size:27 final size:29
Alignment explanation
Indices: 88855--88923 Score: 99
Period size: 27 Copynumber: 2.4 Consensus size: 29
88845 TGGATCTAGG
88855 TTGGGCTTGTAAACA-GGCCTCCGGGT-C-
1 TTGGGCTTGTAAA-AGGGCCTCCGGGTCCT
88882 TTGGGCTTGTAAAATGGGCCTCCGGGTCCT
1 TTGGGCTTGTAAAA-GGGCCTCCGGGTCCT
88912 TTGGGCTTGTAA
1 TTGGGCTTGTAA
88924 TAATATTTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
26 1 0.03
27 13 0.34
28 11 0.29
29 1 0.03
30 12 0.32
ACGTcount: A:0.14, C:0.22, G:0.33, T:0.30
Consensus pattern (29 bp):
TTGGGCTTGTAAAAGGGCCTCCGGGTCCT
Found at i:88940 original size:3 final size:3
Alignment explanation
Indices: 88934--88970 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
88924 TAATATTTAT
88934 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
88971 TAAAATGAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:89784 original size:24 final size:23
Alignment explanation
Indices: 89749--89793 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
89739 TGAACAAATT
89749 CTTCTCATTATGAACTTCTTCTTC
1 CTTCTCATTATG-ACTTCTTCTTC
*
89773 CTTCTTCA-TATGAGTTCTTCT
1 CTTC-TCATTATGACTTCTTCT
89794 CTATCTGGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 8 0.42
24 8 0.42
25 3 0.16
ACGTcount: A:0.16, C:0.27, G:0.07, T:0.51
Consensus pattern (23 bp):
CTTCTCATTATGACTTCTTCTTC
Found at i:89790 original size:103 final size:102
Alignment explanation
Indices: 89339--89897 Score: 1028
Period size: 102 Copynumber: 5.5 Consensus size: 102
89329 TTGAATAAGC
*
89339 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTTTATCTGGCAATGTTGATC
1 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCTATCTGGCAATGTTGATC
89404 CATCGAGTGATGAATCCAAACAAAAGGTTGAACAAAT
66 CATCGAGTGATGAATCCAAACAAAAGGTTGAACAAAT
* *
89441 TCTTCTCATTATGAATTTCTTCTTCATTCTTCAGATGAGTTCTTCTCTATCTGGCAATGTTGATC
1 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCTATCTGGCAATGTTGATC
89506 CATCGAGTGATGAATCCAAACAAAAGGTTGAACAAAT
66 CATCGAGTGATGAATCCAAACAAAAGGTTGAACAAAT
* *
89543 TCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTATTCTCTATCTGGCAATGTTGATC
1 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCTATCTGGCAATGTTGATC
89608 CATCGAGTGATGAATCCAAACAAAAGGTTGAACAAAT
66 CATCGAGTGATGAATCCAAACAAAAGGTTGAACAAAT
89645 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCTATCTGGCAATGTTGATC
1 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCTATCTGGCAATGTTGATC
89710 CATCGAGTGATGAATCCAAACAAAAGGTTTGAACAAAT
66 CATCGAGTGATGAATCCAAACAAAAGG-TTGAACAAAT
*
89748 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCATATGAGTTCTTCTCTATCTGGCAATGTTGATC
1 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCTATCTGGCAATGTTGATC
89813 CATCGAGTGATGAATCCAAACAAAAGGTTTGAACAAAT
66 CATCGAGTGATGAATCCAAACAAAAGG-TTGAACAAAT
* *
89851 TCTTTTCATTATGAACTTCTTCTTCCTTCTTTAGATGAGTTCTTCTC
1 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
89898 ATTATGAACT
Statistics
Matches: 445, Mismatches: 11, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
102 289 0.65
103 156 0.35
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.39
Consensus pattern (102 bp):
TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCTATCTGGCAATGTTGATC
CATCGAGTGATGAATCCAAACAAAAGGTTGAACAAAT
Found at i:90809 original size:83 final size:83
Alignment explanation
Indices: 90672--91493 Score: 1500
Period size: 83 Copynumber: 9.9 Consensus size: 83
90662 GGTTTTATAT
*
90672 CAAACCAAATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTTCAAA
1 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTTCAAA
*
90737 ATCAATGATTGATTTTAC
66 ATCAATGATTGGTTTTAC
90755 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTTCAAA
1 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTTCAAA
90820 ATCAATGATTGGTTTTAC
66 ATCAATGATTGGTTTTAC
* *
90838 CAAAACAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTACTAGCACATTCATCTTTCAAA
1 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTTCAAA
90903 ATCAATGATTGGTTTTAC
66 ATCAATGATTGGTTTTAC
90921 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTTCAAA
1 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTTCAAA
*
90986 ATCTATGATTGGTTTTAC
66 ATCAATGATTGGTTTTAC
91004 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTTAGCACATTCATCTTTCAA
1 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA-TTAGCACATTCATCTTTCAA
91069 AATCAATGATTGGTTTTAC
65 AATCAATGATTGGTTTTAC
* *
91088 CAAATCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGTTATTAGCACATTCATCTTTCAAA
1 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTTCAAA
* * * *
91153 ATTAATAACTGATTTTAC
66 ATCAATGATTGGTTTTAC
91171 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTTCAAA
1 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTTCAAA
*
91236 ATCAATGATTGATTTTAC
66 ATCAATGATTGGTTTTAC
*
91254 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTGTTAGCACATTCATCTTTCAAA
1 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTTCAAA
*
91319 ATCAATGATTGGGTTTAC
66 ATCAATGATTGGTTTTAC
91337 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTTCAAA
1 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTTCAAA
91402 ATCAATGATTGGTTTTAC
66 ATCAATGATTGGTTTTAC
*
91420 CAAACCAGATCAGATAACTCAAAGAACACTTCCCGAAGATGCTATTAGCACATTCATCTTTCAAA
1 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTTCAAA
91485 ATCAATGAT
66 ATCAATGAT
91494 CCGCAAGGCT
Statistics
Matches: 713, Mismatches: 25, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
83 633 0.89
84 80 0.11
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.28
Consensus pattern (83 bp):
CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTTCAAA
ATCAATGATTGGTTTTAC
Found at i:91451 original size:416 final size:415
Alignment explanation
Indices: 90680--91493 Score: 1520
Period size: 416 Copynumber: 2.0 Consensus size: 415
90670 ATCAAACCAA
*
90680 ATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTTCAAAATCAATGA
1 ATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTTCAAAATCAATAA
*
90745 TTGATTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTC
66 CTGATTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTC
*
90810 ATCTTTCAAAATCAATGATTGGTTTTACCAAAACAGATCAGATAACTCAAAGAACACTTCCAGAA
131 ATCTTTCAAAATCAATGATTGATTTTACCAAAACAGATCAGATAACTCAAAGAACACTTCCAGAA
*
90875 GATGCTACTAGCACATTCATCTTTCAAAATCAATGATTGGTTTTACCAAACCAGATCAGATAACT
196 GATGCTACTAGCACATTCATCTTTCAAAATCAATGATTGGGTTTACCAAACCAGATCAGATAACT
*
90940 CAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTTCAAAATCTATGATTGGTTTTACC
261 CAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTTCAAAATCAATGATTGGTTTTACC
91005 AAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTTAGCACATTCATCTTTCAAA
326 AAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA-TTAGCACATTCATCTTTCAAA
91070 ATCAATGATTGGTTTTACCAAATCAG
390 ATCAATGATTGGTTTTACCAAATCAG
* *
91096 ATCAGATAACTCAAAGAACACTTCCAGAAGATGTTATTAGCACATTCATCTTTCAAAATTAATAA
1 ATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTTCAAAATCAATAA
91161 CTGATTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTC
66 CTGATTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTC
*
91226 ATCTTTCAAAATCAATGATTGATTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAA
131 ATCTTTCAAAATCAATGATTGATTTTACCAAAACAGATCAGATAACTCAAAGAACACTTCCAGAA
**
91291 GATGCTGTTAGCACATTCATCTTTCAAAATCAATGATTGGGTTTACCAAACCAGATCAGATAACT
196 GATGCTACTAGCACATTCATCTTTCAAAATCAATGATTGGGTTTACCAAACCAGATCAGATAACT
91356 CAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTTCAAAATCAATGATTGGTTTTACC
261 CAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTTCAAAATCAATGATTGGTTTTACC
*
91421 AAACCAGATCAGATAACTCAAAGAACACTTCCCGAAGATGCTATTAGCACATTCATCTTTCAAAA
326 AAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTTCAAAA
91486 TCAATGAT
391 TCAATGAT
91494 CCGCAAGGCT
Statistics
Matches: 387, Mismatches: 11, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
415 30 0.08
416 357 0.92
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.28
Consensus pattern (415 bp):
ATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTTCAAAATCAATAA
CTGATTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTC
ATCTTTCAAAATCAATGATTGATTTTACCAAAACAGATCAGATAACTCAAAGAACACTTCCAGAA
GATGCTACTAGCACATTCATCTTTCAAAATCAATGATTGGGTTTACCAAACCAGATCAGATAACT
CAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTTCAAAATCAATGATTGGTTTTACC
AAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCATCTTTCAAAA
TCAATGATTGGTTTTACCAAATCAG
Found at i:99932 original size:15 final size:15
Alignment explanation
Indices: 99908--99940 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
99898 GAAAATCATG
99908 AAATGAATGTATGCA
1 AAATGAATGTATGCA
*
99923 AAATGCATGTATGCA
1 AAATGAATGTATGCA
99938 AAA
1 AAA
99941 AAGGTATTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.48, C:0.09, G:0.18, T:0.24
Consensus pattern (15 bp):
AAATGAATGTATGCA
Found at i:105300 original size:28 final size:30
Alignment explanation
Indices: 105246--105314 Score: 99
Period size: 28 Copynumber: 2.4 Consensus size: 30
105236 TGGATCTGGG
105246 TTGGGCTTGT-AAACGGGCCTCCGGGT-C-
1 TTGGGCTTGTAAAACGGGCCTCCGGGTCCT
* *
105273 TTGGGCTTGTAAAATGGGCCTTCGGGTCCT
1 TTGGGCTTGTAAAACGGGCCTCCGGGTCCT
105303 TTGGGCTTGTAA
1 TTGGGCTTGTAA
105315 TAATATTTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 10 0.27
28 14 0.38
29 1 0.03
30 12 0.32
ACGTcount: A:0.13, C:0.20, G:0.35, T:0.32
Consensus pattern (30 bp):
TTGGGCTTGTAAAACGGGCCTCCGGGTCCT
Found at i:105332 original size:3 final size:3
Alignment explanation
Indices: 105312--105366 Score: 83
Period size: 3 Copynumber: 18.3 Consensus size: 3
105302 TTTGGGCTTG
* * *
105312 TAA TAA TAT TTA TTA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
105360 TAA TAA T
1 TAA TAA T
105367 TAAAATGAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (3 bp):
TAA
Found at i:106087 original size:30 final size:30
Alignment explanation
Indices: 106053--106289 Score: 325
Period size: 30 Copynumber: 8.0 Consensus size: 30
106043 CCAAATTAAT
106053 AAAAATAGAAACTTAAAGGACTAAAATAGC
1 AAAAATAGAAACTTAAAGGACTAAAATAGC
* * *
106083 AAAAACAAAAACTTAAAAGACTAAAATAGC
1 AAAAATAGAAACTTAAAGGACTAAAATAGC
* *
106113 AAAAAAAGAAACTTAAAAGACTAAAATAGC
1 AAAAATAGAAACTTAAAGGACTAAAATAGC
* *
106143 ACAAATAAAAACTTAAAGGACTAAAATAGC
1 AAAAATAGAAACTTAAAGGACTAAAATAGC
* *
106173 AAAAATAGAAACTTAAAGGATTAAAATAGA
1 AAAAATAGAAACTTAAAGGACTAAAATAGC
* *
106203 AAAAATAGAAAATTAAAGG-CT-AAACAGC
1 AAAAATAGAAACTTAAAGGACTAAAATAGC
106231 AAAAATAGAAACTTAAAGGACTAAAATAGC
1 AAAAATAGAAACTTAAAGGACTAAAATAGC
* * * *
106261 AAAAACATAAACTTAAAAGATTAAAATAG
1 AAAAATAGAAACTTAAAGGACTAAAATAG
106290 TAAATACAAA
Statistics
Matches: 182, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
28 23 0.13
29 3 0.02
30 156 0.86
ACGTcount: A:0.63, C:0.10, G:0.11, T:0.16
Consensus pattern (30 bp):
AAAAATAGAAACTTAAAGGACTAAAATAGC
Found at i:107776 original size:3 final size:3
Alignment explanation
Indices: 107730--107768 Score: 51
Period size: 3 Copynumber: 12.7 Consensus size: 3
107720 TATGTATTAT
* *
107730 TAA TAA TAA TTAA TAA TAA TAG TAG TAA TAA TAA TAA TA
1 TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
107769 CAATAATATA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
3 30 0.91
4 3 0.09
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:111176 original size:3 final size:3
Alignment explanation
Indices: 111170--111333 Score: 190
Period size: 3 Copynumber: 55.3 Consensus size: 3
111160 AAACATAAGT
* * * * *
111170 TAA TAA TAT TAC TAA TAA TTA TTA TAA T-A TAA TAA TAA TAA TTA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * ** *
111217 TATA TAG TGA TAA TTA TAA T-A CAA TTG T-T TAA TAA TAA TAA TAA
1 TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
111261 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
111309 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
111334 TTTCATATAA
Statistics
Matches: 138, Mismatches: 19, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
2 4 0.03
3 131 0.95
4 3 0.02
ACGTcount: A:0.59, C:0.01, G:0.02, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:111612 original size:35 final size:35
Alignment explanation
Indices: 111544--111612 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 35
111534 GACAAAATTC
* *
111544 GTTTCAAGGGAAACGATCTCAAATATGTTTGTTTT
1 GTTTCAAGGGAAACGATCTCAAAGATGTGTGTTTT
111579 GTTTCAAGGGAAACAGA-CTCAAAGATAG-GTGTTT
1 GTTTCAAGGGAAAC-GATCTCAAAGAT-GTGTGTTT
111613 CAAGAGAAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
35 27 0.90
36 3 0.10
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.33
Consensus pattern (35 bp):
GTTTCAAGGGAAACGATCTCAAAGATGTGTGTTTT
Found at i:111648 original size:36 final size:35
Alignment explanation
Indices: 111608--111723 Score: 104
Period size: 36 Copynumber: 3.4 Consensus size: 35
111598 CAAAGATAGG
111608 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAACT
1 TGTTTCAAGAGAAACTGTCTCAA-GGAGACAAAACT
* *
111644 TGTTTCAAGAGAAACAT-ACTCAA--AG-----ATT
1 TGTTTCAAGAGAAAC-TGTCTCAAGGAGACAAAACT
* *
111672 TTTTTCAAGAAAAACTGTCTCAAGAGAGACAAAACAT
1 TGTTTCAAGAGAAACTGTCTCAAG-GAGACAAAAC-T
111709 TGTTTCAAGAGAAAC
1 TGTTTCAAGAGAAAC
111724 AGACTCAAAT
Statistics
Matches: 61, Mismatches: 8, Indels: 21
0.68 0.09 0.23
Matches are distributed among these distances:
27 1 0.02
28 20 0.33
31 2 0.03
33 2 0.03
36 21 0.34
37 15 0.25
ACGTcount: A:0.42, C:0.16, G:0.17, T:0.25
Consensus pattern (35 bp):
TGTTTCAAGAGAAACTGTCTCAAGGAGACAAAACT
Found at i:111764 original size:62 final size:63
Alignment explanation
Indices: 111577--111786 Score: 264
Period size: 62 Copynumber: 3.3 Consensus size: 63
111567 TATGTTTGTT
* * *
111577 TTGTTTCAAGGGAAACAGACTCAAAGATAGGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAA
1 TTGTTTCAAGAGAAACAGACTCAAAGATA--T-TTTCAAAAGAAACTGTCTCAAGAGAGACAAAA
111642 C
63 C
* *
111643 TTGTTTCAAGAGAAACATACTCAAAGATTTTTTTCAAGAA-AAACTGTCTCAAGAGAGACAAAAC
1 TTGTTTCAAGAGAAACAGACTCAAAGA-TATTTTCAA-AAGAAACTGTCTCAAGAGAGACAAAAC
* *
111707 ATTGTTTCAAGAGAAACAGACTC-AA-ATATCTTCAAAAGAAACTGTCTCAAGAAAGACAAAAC
1 -TTGTTTCAAGAGAAACAGACTCAAAGATATTTTCAAAAGAAACTGTCTCAAGAGAGACAAAAC
*
111769 TTTGTTTTAAGAGAAACA
1 -TTGTTTCAAGAGAAACA
111787 ATTTCAAAGT
Statistics
Matches: 129, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
61 2 0.02
62 46 0.36
63 1 0.01
64 31 0.24
65 23 0.18
66 25 0.19
67 1 0.01
ACGTcount: A:0.43, C:0.15, G:0.17, T:0.24
Consensus pattern (63 bp):
TTGTTTCAAGAGAAACAGACTCAAAGATATTTTCAAAAGAAACTGTCTCAAGAGAGACAAAAC
Found at i:111794 original size:62 final size:62
Alignment explanation
Indices: 111611--111855 Score: 216
Period size: 62 Copynumber: 3.9 Consensus size: 62
111601 AGATAGGTGT
* * * *
111611 TTCAAGAGAAACTGTCTCAAGGGAGACAAAACTTGTTTCAAGAGAAAC-ATACTCAAAGATTTTT
1 TTCAAAAGAAACTGTCTCAAGAGAGACAAAACTTGTTTCAAGAGAAACAAT-CTC-AA-ATTATC
111675 TTCAAGAA-AAACTGTCTCAAGAGAGACAAAACATTGTTTCAAGAGAAACAGA-CTCAAA-TATC
1 TTCAA-AAGAAACTGTCTCAAGAGAGACAAAAC-TTGTTTCAAGAGAAACA-ATCTCAAATTATC
* * * *
111737 TTCAAAAGAAACTGTCTCAAGAAAGACAAAACTTTGTTTTAAGAGAAACAATTTCAAAGTTTGTC
1 TTCAAAAGAAACTGTCTCAAGAGAGACAAAAC-TTGTTTCAAGAGAAACAATCTCAAA--TTATC
* * ** ** *
111802 TT---AAGAAAGTTGTCTCAAGTGAGACAAAGTTTGTTTTGAGAAAAACAATCTCAA
1 TTCAAAAGAAA-CTGTCTCAAGAGAGACAAAACTTGTTTCAAGAGAAACAATCTCAA
111856 GTTTCAAGTG
Statistics
Matches: 154, Mismatches: 17, Indels: 22
0.80 0.09 0.11
Matches are distributed among these distances:
61 3 0.02
62 78 0.51
63 17 0.11
64 30 0.19
65 25 0.16
67 1 0.01
ACGTcount: A:0.43, C:0.15, G:0.16, T:0.27
Consensus pattern (62 bp):
TTCAAAAGAAACTGTCTCAAGAGAGACAAAACTTGTTTCAAGAGAAACAATCTCAAATTATC
Found at i:111808 original size:126 final size:129
Alignment explanation
Indices: 111577--111829 Score: 313
Period size: 126 Copynumber: 2.0 Consensus size: 129
111567 TATGTTTGTT
* * * **
111577 TTGTTTCAAGGGAAACAGACTCAAAGATAGGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAA
1 TTGTTTCAAGAGAAACAGACTCAAAGATA-GTGCTTCAAAAGAAACTGTCTCAAGAAAGACAAAA
*
111642 CTTGTTTCAAGAGAAACATACTCAAAGATTTTTTTCAAGAAAAACTGTCTCAAGAGAGACAAAAC
65 CTTGTTTCAAGAGAAACATACTCAAAGATTTTCTTCAAG-AAAACTGTCTCAAGAGAGACAAAAC
111707 A
129 A
111708 TTGTTTCAAGAGAAACAGACTC-AA-ATA-T-CTTCAAAAGAAACTGTCTCAAGAAAGACAAAAC
1 TTGTTTCAAGAGAAACAGACTCAAAGATAGTGCTTCAAAAGAAACTGTCTCAAGAAAGACAAAAC
* * ** *
111769 TTTGTTTTAAGAGAAACA-ATTTCAAAG-TTTGTCTT-AAGAAAGTTGTCTCAAGTGAGACAAA
66 -TTGTTTCAAGAGAAACATA-CTCAAAGATTT-TCTTCAAGAAAACTGTCTCAAGAGAGACAAA
111830 GTTTGTTTTG
Statistics
Matches: 108, Mismatches: 11, Indels: 12
0.82 0.08 0.09
Matches are distributed among these distances:
125 20 0.19
126 36 0.33
127 26 0.24
129 3 0.03
130 2 0.02
131 21 0.19
ACGTcount: A:0.42, C:0.15, G:0.17, T:0.26
Consensus pattern (129 bp):
TTGTTTCAAGAGAAACAGACTCAAAGATAGTGCTTCAAAAGAAACTGTCTCAAGAAAGACAAAAC
TTGTTTCAAGAGAAACATACTCAAAGATTTTCTTCAAGAAAACTGTCTCAAGAGAGACAAAACA
Found at i:111951 original size:37 final size:36
Alignment explanation
Indices: 111894--111990 Score: 115
Period size: 37 Copynumber: 2.6 Consensus size: 36
111884 TATCTCAAAG
* *
111894 GAAAAATGTCTCAAGCGAGACGAAATTTGTTTTT-A
1 GAAAACTGTCTCAAGCGAGACGAAATTTATTTTTAA
* * *
111929 GCTAAAACTGTCTCGAGTGAGACAAAATTTATTTTTAA
1 G--AAAACTGTCTCAAGCGAGACGAAATTTATTTTTAA
111967 GAAAACTTGTCTCAAGCGAGACGA
1 GAAAAC-TGTCTCAAGCGAGACGA
111991 CCCTTTGTTT
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
35 1 0.02
36 5 0.10
37 42 0.84
38 2 0.04
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (36 bp):
GAAAACTGTCTCAAGCGAGACGAAATTTATTTTTAA
Found at i:113262 original size:19 final size:18
Alignment explanation
Indices: 113220--113268 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 18
113210 TTGCTCTTTG
*
113220 CTCTTTGCTTTTTCTTCT
1 CTCTTTGCTTTTTCTTCA
113238 CTCTTTGCTTTTCTCTAT-A
1 CTCTTTGCTTTT-TCT-TCA
113257 CTCTTTG-TTTTT
1 CTCTTTGCTTTTT
113269 TTTGCTTCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 1 0.04
18 16 0.57
19 10 0.36
20 1 0.04
ACGTcount: A:0.04, C:0.24, G:0.06, T:0.65
Consensus pattern (18 bp):
CTCTTTGCTTTTTCTTCA
Found at i:115176 original size:32 final size:32
Alignment explanation
Indices: 115140--115222 Score: 148
Period size: 32 Copynumber: 2.6 Consensus size: 32
115130 TAAATGATAT
115140 AAACAAAAGAAAAGAAATAAATTAGTGTACAC
1 AAACAAAAGAAAAGAAATAAATTAGTGTACAC
115172 AAACAAAAGAAAAGAAATAAATTAGTGTACAC
1 AAACAAAAGAAAAGAAATAAATTAGTGTACAC
*
115204 AAACAAAACAAAAAGAAAT
1 AAACAAAA-GAAAAGAAAT
115223 TAGTTAGTAC
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
32 40 0.82
33 9 0.18
ACGTcount: A:0.66, C:0.10, G:0.11, T:0.13
Consensus pattern (32 bp):
AAACAAAAGAAAAGAAATAAATTAGTGTACAC
Found at i:117009 original size:30 final size:30
Alignment explanation
Indices: 116923--117268 Score: 406
Period size: 30 Copynumber: 11.7 Consensus size: 30
116913 TAAGATTAAC
* *
116923 AGAAACTT-GAGGACTAAAATAGTAAAAA-
1 AGAAACTTAAAGGACTAAAATAGAAAAAAT
*
116951 AGAAACTTAAAGGATTAAAATA-AAAAAAT
1 AGAAACTTAAAGGACTAAAATAGAAAAAAT
116980 AGAAACTTAAAGGACTAAAATAGAAAAAAT
1 AGAAACTTAAAGGACTAAAATAGAAAAAAT
*
117010 AGAAACTTAAAGGACTAAAATATAAAAAAAAT
1 AGAAACTTAAAGGACT-AAA-ATAGAAAAAAT
117042 AGAAACTTAAAGGACTAAAATAGAAAAACAT
1 AGAAACTTAAAGGACTAAAATAGAAAAA-AT
* *
117073 --AAACTTAAAGGACTAAAATAGAACAAAC
1 AGAAACTTAAAGGACTAAAATAGAAAAAAT
* *
117101 ATAAACTTAAAGGAATAAAATAGAAAAAAT
1 AGAAACTTAAAGGACTAAAATAGAAAAAAT
*
117131 AGAAA-TT-AAGGTACTAAAATAGCAAAAAT
1 AGAAACTTAAAGG-ACTAAAATAGAAAAAAT
* *
117160 AAAAACTTAAAGTACTAAAATA-ATAAAAAT
1 AGAAACTTAAAGGACTAAAATAGA-AAAAAT
* * * *
117190 AGAAACTTAAAGGGCT-AAATAGTACAAAC
1 AGAAACTTAAAGGACTAAAATAGAAAAAAT
*
117219 ATAAACTTAAAGGACTAAAATA-ACAAAAAT
1 AGAAACTTAAAGGACTAAAATAGA-AAAAAT
* *
117249 AAAAACTTAAAGGATTAAAA
1 AGAAACTTAAAGGACTAAAA
117269 CAGTAATTAC
Statistics
Matches: 273, Mismatches: 30, Indels: 28
0.82 0.09 0.08
Matches are distributed among these distances:
28 18 0.07
29 101 0.37
30 117 0.43
31 11 0.04
32 26 0.10
ACGTcount: A:0.62, C:0.08, G:0.11, T:0.19
Consensus pattern (30 bp):
AGAAACTTAAAGGACTAAAATAGAAAAAAT
Found at i:117031 original size:59 final size:59
Alignment explanation
Indices: 116877--117268 Score: 392
Period size: 59 Copynumber: 6.6 Consensus size: 59
116867 TATAAGGGAT
* * * ** * *
116877 TAAAATAGAACAATAA-AAAAATTTAAAGGACCAAAATAAGATTAACAGAAACTT-GAGGAC
1 TAAAATAGAA-AA-AATAGAAACTTAAAGGACTAAAATAA-AAAAATAGAAACTTAAAGGAC
* *
116937 TAAAATAGTAAAAA-AGAAACTTAAAGGATTAAAATAAAAAAATAGAAACTTAAAGGAC
1 TAAAATAGAAAAAATAGAAACTTAAAGGACTAAAATAAAAAAATAGAAACTTAAAGGAC
116995 TAAAATAGAAAAAATAGAAACTTAAAGGACTAAAATATAAAAAAAATAGAAACTTAAAGGAC
1 TAAAATAGAAAAAATAGAAACTTAAAGGACT-AAA-AT-AAAAAAATAGAAACTTAAAGGAC
* * * *
117057 TAAAATAGAAAAACAT--AAACTTAAAGGACTAAAATAGAACAAACATAAACTTAAAGGAA
1 TAAAATAGAAAAA-ATAGAAACTTAAAGGACTAAAATA-AAAAAATAGAAACTTAAAGGAC
* * *
117116 TAAAATAGAAAAAATAGAAA-TT-AAGGTACTAAAATAGCAAAAATAAAAACTTAAAGTAC
1 TAAAATAGAAAAAATAGAAACTTAAAGG-ACTAAAATA-AAAAAATAGAAACTTAAAGGAC
* * *
117175 TAAAATA-ATAAAAATAGAAACTTAAAGGGCTAAATAGTACAAACAT--AAACTTAAAGGAC
1 TAAAATAGA-AAAAATAGAAACTTAAAGGACTAAA-A-TAAAAAAATAGAAACTTAAAGGAC
* *
117234 TAAAATA-ACAAAAATAAAAACTTAAAGGATTAAAA
1 TAAAATAGA-AAAAATAGAAACTTAAAGGACTAAAA
117269 CAGTAATTAC
Statistics
Matches: 289, Mismatches: 28, Indels: 32
0.83 0.08 0.09
Matches are distributed among these distances:
57 11 0.04
58 48 0.17
59 138 0.48
60 25 0.09
61 27 0.09
62 38 0.13
63 2 0.01
ACGTcount: A:0.62, C:0.08, G:0.11, T:0.19
Consensus pattern (59 bp):
TAAAATAGAAAAAATAGAAACTTAAAGGACTAAAATAAAAAAATAGAAACTTAAAGGAC
Found at i:117324 original size:148 final size:147
Alignment explanation
Indices: 116899--117271 Score: 380
Period size: 148 Copynumber: 2.5 Consensus size: 147
116889 ATAAAAAAAT
* ** * * * *
116899 TTAAAGGACCAAAATAAGATTAACAGAAACTT-GAGGACTAAAATAGTA-AAAAAGAAACTTAAA
1 TTAAAGGACTAAAAT-AGAAAAACATAAACTTAAAGGACTAAAATA-AACAAAAATAAACTTAAA
* * * * * * ** *
116962 GGATTAAAATA-AAAAAATAGAAACTTAAAGG-ACTAAAATAGAAAAAATAGAAACTTAAAGGAC
64 GGAATAAAACAGAAAAAACAGAAA--TCAAGGTACTAAAATAGCAAAAATAAAAAAATAAAGTAC
117025 TAAAATATAAAAAAAATAGAAAC
127 T-AAA-ATAAAAAAAATAGAAAC
*
117048 TTAAAGGACTAAAATAGAAAAACATAAACTTAAAGGACTAAAATAGAACAAACATAAACTTAAAG
1 TTAAAGGACTAAAATAGAAAAACATAAACTTAAAGGACTAAAATA-AACAAAAATAAACTTAAAG
* * * **
117113 GAATAAAATAGAAAAAATAGAAATTAAGGTACTAAAATAGCAAAAATAAAAACTTAAAGTACTAA
65 GAATAAAACAGAAAAAACAGAAATCAAGGTACTAAAATAGCAAAAATAAAAAAATAAAGTACTAA
*
117178 AATAATAAAAATAGAAAC
130 AATAAAAAAAATAGAAAC
* *
117196 TTAAAGGGCT-AAATAGTACAAACATAAACTTAAAGGACTAAAAT-AACAAAAATAAAAACTTAA
1 TTAAAGGACTAAAATAG-AAAAACATAAACTTAAAGGACTAAAATAAACAAAAAT--AAACTTAA
*
117259 AGGATTAAAACAG
63 AGGAATAAAACAG
117272 TAATTACAGA
Statistics
Matches: 198, Mismatches: 19, Indels: 15
0.85 0.08 0.06
Matches are distributed among these distances:
146 8 0.04
147 6 0.03
148 83 0.42
149 36 0.18
150 53 0.27
151 12 0.06
ACGTcount: A:0.61, C:0.08, G:0.12, T:0.19
Consensus pattern (147 bp):
TTAAAGGACTAAAATAGAAAAACATAAACTTAAAGGACTAAAATAAACAAAAATAAACTTAAAGG
AATAAAACAGAAAAAACAGAAATCAAGGTACTAAAATAGCAAAAATAAAAAAATAAAGTACTAAA
ATAAAAAAAATAGAAAC
Found at i:118704 original size:3 final size:3
Alignment explanation
Indices: 118696--118746 Score: 52
Period size: 3 Copynumber: 17.7 Consensus size: 3
118686 TAATATGTAT
* * * *
118696 TAA TAA TAA TAG TAG TAG TAG TAA TAA TAA TAA T-A TAA TAA TAA T-A
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
118742 TAA TA
1 TAA TA
118747 TTTTTGTAGA
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
2 4 0.09
3 40 0.91
ACGTcount: A:0.57, C:0.00, G:0.08, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:118735 original size:11 final size:11
Alignment explanation
Indices: 118696--118746 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
118686 TAATATGTAT
118696 TAATAATAATA
1 TAATAATAATA
* * *
118707 GTAGTAGTAGTAA
1 -TAATAATAAT-A
118720 TAATAATAATA
1 TAATAATAATA
118731 TAATAATAATA
1 TAATAATAATA
118742 TAATA
1 TAATA
118747 TTTTTGTAGA
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
11 17 0.53
12 14 0.44
13 1 0.03
ACGTcount: A:0.57, C:0.00, G:0.08, T:0.35
Consensus pattern (11 bp):
TAATAATAATA
Found at i:127286 original size:23 final size:23
Alignment explanation
Indices: 127256--127319 Score: 83
Period size: 23 Copynumber: 2.8 Consensus size: 23
127246 AACGCAAACG
* *
127256 AACGAACATAAAATAACATAATA
1 AACGAACATAAAAGAACACAATA
* *
127279 AATGAACATAAACGAACACAATA
1 AACGAACATAAAAGAACACAATA
*
127302 AACGAACATAAACGAACA
1 AACGAACATAAAAGAACA
127320 ACACAAATAC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.62, C:0.17, G:0.08, T:0.12
Consensus pattern (23 bp):
AACGAACATAAAAGAACACAATA
Found at i:127295 original size:10 final size:10
Alignment explanation
Indices: 127276--127319 Score: 52
Period size: 10 Copynumber: 4.1 Consensus size: 10
127266 AAATAACATA
*
127276 ATAAATGAAC
1 ATAAACGAAC
127286 ATAAACGAACAC
1 ATAAACG-A-AC
127298 AATAAACGAAC
1 -ATAAACGAAC
127309 ATAAACGAAC
1 ATAAACGAAC
127319 A
1 A
127320 ACACAAATAC
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
10 17 0.57
11 3 0.10
12 3 0.10
13 7 0.23
ACGTcount: A:0.61, C:0.18, G:0.09, T:0.11
Consensus pattern (10 bp):
ATAAACGAAC
Found at i:135663 original size:125 final size:125
Alignment explanation
Indices: 135438--135693 Score: 368
Period size: 125 Copynumber: 2.0 Consensus size: 125
135428 AAGTTGTGAT
* * *
135438 ATGTTGGGGCACGACTGAACCCACATCATGTTGAGATGACAAGATTCAGACCAAGGAGGCATTAA
1 ATGTTGGGGCACGACTGAACCAACATCATGTTGAAATGACAAGATTCAGACCAAGAAGGCATTAA
* * * * **
135503 GAACGGGCTTTACAATTTGAGGTGATGGGGCATTTTGAAGGCTTGTACCAGTATAAGATA
66 GAACGAGCCTTACAAATTGAGGTGATGAGGCATTTTGAAGGCCCGTACCAGTATAAGATA
** * *
135563 ATGTTGGGGCACGACTGAACCAACATCATGTTGAAATGATGAGATTCAGACCAAGAAGGCGTTGA
1 ATGTTGGGGCACGACTGAACCAACATCATGTTGAAATGACAAGATTCAGACCAAGAAGGCATTAA
* * *
135628 GAATGAGCCTTACAAATTGAGGTGTTGAGGTATTTTGAAGGCCCGTACCAGTATAAGATA
66 GAACGAGCCTTACAAATTGAGGTGATGAGGCATTTTGAAGGCCCGTACCAGTATAAGATA
135688 ATGTTG
1 ATGTTG
135694 CAGCACTAGT
Statistics
Matches: 115, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
125 115 1.00
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.25
Consensus pattern (125 bp):
ATGTTGGGGCACGACTGAACCAACATCATGTTGAAATGACAAGATTCAGACCAAGAAGGCATTAA
GAACGAGCCTTACAAATTGAGGTGATGAGGCATTTTGAAGGCCCGTACCAGTATAAGATA
Found at i:137081 original size:35 final size:35
Alignment explanation
Indices: 137001--137138 Score: 159
Period size: 36 Copynumber: 3.9 Consensus size: 35
136991 GGCAAAGTCC
**
137001 ATCTGAAGCCTTCACCGGAGAATAGTGAAGCAATCA
1 ATCTGAAGCCTTCACCAAAGAATAGTGAAGCAA-CA
**
137037 ATCTGAAGCCTTCACCGGAGAATAGTGAAGCAACA
1 ATCTGAAGCCTTCACCAAAGAATAGTGAAGCAACA
* * * * *
137072 ATCTTAAGCCTTCACTAAAGAGTAGGGAAGCAAACC
1 ATCTGAAGCCTTCACCAAAGAATAGTGAAGC-AACA
*
137108 ATCTTAAGCCTTTCACCAAAGAATAGTGAAG
1 ATCTGAAGCC-TTCACCAAAGAATAGTGAAG
137139 TAAACCATCT
Statistics
Matches: 90, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
35 27 0.30
36 46 0.51
37 17 0.19
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (35 bp):
ATCTGAAGCCTTCACCAAAGAATAGTGAAGCAACA
Found at i:137636 original size:54 final size:54
Alignment explanation
Indices: 137572--138530 Score: 1146
Period size: 54 Copynumber: 18.1 Consensus size: 54
137562 GAAAAGATTA
* * * *
137572 TTCGAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTAAGAAGAATATT
1 TTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATG
* *
137626 TTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATT
1 TTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATG
* * * **
137680 TTCGAGTTCTATACTTCCTGAAGAAAGAGGGAGCGAACCCGT---TTGAAGATG
1 TTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATG
* ** * *
137731 TTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAATCCGTTCGCAGAAGATT
1 TTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATG
* * **
137785 TTCGAGTTCCATGCTCCCTAAAGAAAGAGGGGGCGAACCCGT---TTGAAGATG
1 TTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATG
* * * *
137836 TTCGAGTTTCATACTCCTTAAAGAAAGAAGGAGCGAATCCGTAAGAAGAAGATG
1 TTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATG
* * * *
137890 TCCGAGTTCCATACTCCTTAAAGAAAGAAGGAGTGAACCCGTAAGAAGAAGATG
1 TTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATG
* * *
137944 TTCGAGTTCCATACTCCTTAAAGATAGAAGGAGCGAACCCGTAAGAAGAAGATG
1 TTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATG
* * * * * *
137998 TCCGAGTTCCATACTCCTTAAAGAAATAAGGAGCGAACCCGTAAGAAGAATATT
1 TTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATG
* *
138052 TTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATT
1 TTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATG
* * * **
138106 TTCGAGTTCTATACTTCCTGAAA-AAAGAGGGTGCGAACCCGT---TTGAAGATG
1 TTCGAGTTCCATACTCCCT-AAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATG
** * *
138157 TTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTCGCAGAAGATT
1 TTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATG
* **
138211 TTCGAGTTCCATACTCCCTAAAGAAAGAGGGGGCGAACCCGT---TTGAAGATG
1 TTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATG
* *
138262 TTCGAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTAAGAAGAAGATG
1 TTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATG
* * * * **
138316 TTCGAGTTCTATACTTCCTGAAGAAAGAGGAAGCGAACCCGT--TTA-AAGATG
1 TTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATG
** * * *
138367 TTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTCGCAGAATATT
1 TTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATG
* **
138421 TTCGAGTGCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGT---TTGAAGATG
1 TTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATG
* *
138472 TTAGAGTTCCATACTCCCTGAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATTG
1 TTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGA-TG
138527 TTCG
1 TTCG
138531 TGTCTCATAC
Statistics
Matches: 785, Mismatches: 99, Indels: 41
0.85 0.11 0.04
Matches are distributed among these distances:
50 3 0.00
51 260 0.33
52 1 0.00
53 1 0.00
54 513 0.65
55 7 0.01
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.21
Consensus pattern (54 bp):
TTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATG
Found at i:137781 original size:105 final size:105
Alignment explanation
Indices: 137561--138530 Score: 1257
Period size: 105 Copynumber: 9.1 Consensus size: 105
137551 ATAGTGAAGG
* **
137561 AGAA-AAGATTATTCGAGTTCCATAC-TCCTTAAAGAAAGAAGGAGCGAACCCGTAAGAAGAATA
1 AGAAGAAGATT-TTCGAGTTCCATACTTCC-TAAAGAAAGAGGGAGCGAACCCGTTTGAAG---A
* *
137624 TTTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTA
61 TGTTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTA
* *
137669 AGAAGAAGATTTTCGAGTTCTATACTTCCTGAAGAAAGAGGGAGCGAACCCGTTTGAAGATGTTC
1 AGAAGAAGATTTTCGAGTTCCATACTTCCTAAAGAAAGAGGGAGCGAACCCGTTTGAAGATGTTC
* *
137734 GAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAATCCGTT
66 GAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTA
* * * * *
137774 CGCAGAAGATTTTCGAGTTCCATGCTCCCTAAAGAAAGAGGGGGCGAACCCGTTTGAAGATGTTC
1 AGAAGAAGATTTTCGAGTTCCATACTTCCTAAAGAAAGAGGGAGCGAACCCGTTTGAAGATGTTC
* * * *
137839 GAGTTTCATACTCCTTAAAGAAAGAAGGAGCGAATCCGTA
66 GAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTA
* * * * **
137879 AGAAGAAGATGTCCGAGTTCCATAC-TCCTTAAAGAAAGAAGGAGTGAACCCGTAAGAAGAAGAT
1 AGAAGAAGATTTTCGAGTTCCATACTTCC-TAAAGAAAGAGGGAGCGAACCCGT---TTGAAGAT
* * *
137943 GTTCGAGTTCCATACTCCTTAAAGATAGAAGGAGCGAACCCGTA
62 GTTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTA
* * * * **
137987 AGAAGAAGATGTCCGAGTTCCATAC-TCCTTAAAGAAATAAGGAGCGAACCCGTAAGAAGAATAT
1 AGAAGAAGATTTTCGAGTTCCATACTTCC-TAAAGAAAGAGGGAGCGAACCCGTTTGAAG---AT
* *
138051 TTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTA
62 GTTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTA
* *
138095 AGAAGAAGATTTTCGAGTTCTATACTTCCTGAAA-AAAGAGGGTGCGAACCCGTTTGAAGATGTT
1 AGAAGAAGATTTTCGAGTTCCATACTTCCT-AAAGAAAGAGGGAGCGAACCCGTTTGAAGATGTT
*
138159 CGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTT
65 CGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTA
* * * *
138200 CGCAGAAGATTTTCGAGTTCCATACTCCCTAAAGAAAGAGGGGGCGAACCCGTTTGAAGATGTTC
1 AGAAGAAGATTTTCGAGTTCCATACTTCCTAAAGAAAGAGGGAGCGAACCCGTTTGAAGATGTTC
* *
138265 GAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTA
66 GAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTA
* * * * *
138305 AGAAGAAGATGTTCGAGTTCTATACTTCCTGAAGAAAGAGGAAGCGAACCCGTTTAAAGATGTTC
1 AGAAGAAGATTTTCGAGTTCCATACTTCCTAAAGAAAGAGGGAGCGAACCCGTTTGAAGATGTTC
*
138370 GAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTT
66 GAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTA
* * * * * *
138410 CGCAGAATATTTTCGAGTGCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTTGAAGATGTTA
1 AGAAGAAGATTTTCGAGTTCCATACTTCCTAAAGAAAGAGGGAGCGAACCCGTTTGAAGATGTTC
*
138475 GAGTTCCATACTCCCTGAAGAAAGAGGGAGCGAACCCGTA
66 GAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTA
138515 AGAAGAAGATTGTTCG
1 AGAAGAAGATT-TTCG
138531 TGTCTCATAC
Statistics
Matches: 761, Mismatches: 88, Indels: 28
0.87 0.10 0.03
Matches are distributed among these distances:
104 5 0.01
105 512 0.67
106 4 0.01
108 225 0.30
109 15 0.02
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.21
Consensus pattern (105 bp):
AGAAGAAGATTTTCGAGTTCCATACTTCCTAAAGAAAGAGGGAGCGAACCCGTTTGAAGATGTTC
GAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTA
Found at i:137887 original size:159 final size:159
Alignment explanation
Indices: 137572--138530 Score: 1118
Period size: 159 Copynumber: 6.0 Consensus size: 159
137562 GAAAAGATTA
* * *
137572 TTCGAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTAAGAAGAATATTTTCGAGTTCCA
1 TTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATTTTCGAGTTCCA
* * * *
137637 TACTCCCTAGAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATTTTCGAGTTCTATACTTCCTGAA
66 TACTCCCTAAAGAAAGAGGGAGCGAACCCGT-A-AAGAAGATGTTCGAGTTCCATAC-TCCTAAA
* **
137702 GAAAGAGGGAGCGAACCCGT---TTGAAGATG
128 GAAAGAAGGAGCGAACCCGTAAGAAGAAGATG
* ** *
137731 TTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAATCCGTTCGCAGAAGATTTTCGAGTTCCA
1 TTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATTTTCGAGTTCCA
* * ** *
137796 TGCTCCCTAAAGAAAGAGGGGGCGAACCCGT-TTGAAGATGTTCGAGTTTCATACTCCTTAAAGA
66 TACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAAGAAGATGTTCGAGTTCCATACTCC-TAAAGA
*
137860 AAGAAGGAGCGAATCCGTAAGAAGAAGATG
130 AAGAAGGAGCGAACCCGTAAGAAGAAGATG
* * * * *
137890 TCCGAGTTCCATACTCCTTAAAGAAAGAAGGAGTGAACCCGTAAGAAGAAGATGTTCGAGTTCCA
1 TTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATTTTCGAGTTCCA
* * * *
137955 TACTCCTTAAAGATAGAAGGAGCGAACCCGTAAGAAGAAGATGTCCGAGTTCCATACTCCTTAAA
66 TACTCCCTAAAGAAAGAGGGAGCGAACCCGT-A-AAGAAGATGTTCGAGTTCCATACTCC-TAAA
* * *
138020 GAAATAAGGAGCGAACCCGTAAGAAGAATATT
128 GAAAGAAGGAGCGAACCCGTAAGAAGAAGATG
* *
138052 TTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATTTTCGAGTTCTA
1 TTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATTTTCGAGTTCCA
* * **
138117 TACTTCCTGAAA-AAAGAGGGTGCGAACCCGT-TTGAAGATGTTCGAGTTCCATACTCCCTAAAG
66 TACTCCCT-AAAGAAAGAGGGAGCGAACCCGTAAAGAAGATGTTCGAGTTCCATACT-CCTAAAG
* ** * *
138180 AAAGAGGGAGCGAACCCGTTCGCAGAAGATT
129 AAAGAAGGAGCGAACCCGTAAGAAGAAGATG
* ** *
138211 TTCGAGTTCCATACTCCCTAAAGAAAGAGGGGGCGAACCCGT---TTGAAGATGTTCGAGTTCCA
1 TTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATTTTCGAGTTCCA
* * * *
138273 TACTCCTTAAAGAAAGAAGGAGCGAACCCGTAAGAAGAAGATGTTCGAGTTCTATACTTCCTGAA
66 TACTCCCTAAAGAAAGAGGGAGCGAACCCGT-A-AAGAAGATGTTCGAGTTCCATAC-TCCTAAA
**
138338 GAAAG-AGGAAGCGAACCCGT--TTA-AAGATG
128 GAAAGAAGG-AGCGAACCCGTAAGAAGAAGATG
** * * *
138367 TTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTCGCAGAATATTTTCGAGTGCCA
1 TTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATTTTCGAGTTCCA
** * *
138432 TACTCCCTAAAGAAAGAGGGAGCGAACCCGT-TTGAAGATGTTAGAGTTCCATACTCCCTGAAGA
66 TACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAAGAAGATGTTCGAGTTCCATACT-CCTAAAGA
*
138496 AAGAGGGAGCGAACCCGTAAGAAGAAGATTG
130 AAGAAGGAGCGAACCCGTAAGAAGAAGA-TG
138527 TTCG
1 TTCG
138531 TGTCTCATAC
Statistics
Matches: 680, Mismatches: 96, Indels: 47
0.83 0.12 0.06
Matches are distributed among these distances:
155 7 0.01
156 165 0.24
157 3 0.00
158 3 0.00
159 355 0.52
160 9 0.01
162 135 0.20
163 3 0.00
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.21
Consensus pattern (159 bp):
TTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATTTTCGAGTTCCA
TACTCCCTAAAGAAAGAGGGAGCGAACCCGTAAAGAAGATGTTCGAGTTCCATACTCCTAAAGAA
AGAAGGAGCGAACCCGTAAGAAGAAGATG
Found at i:138578 original size:55 final size:55
Alignment explanation
Indices: 138519--138640 Score: 183
Period size: 55 Copynumber: 2.2 Consensus size: 55
138509 CCCGTAAGAA
*
138519 GAAGATTGTTCGTGTCTCATACTCTCTGAACAAATAGAGAGCAGACAAGATTATT
1 GAAGATTATTCGTGTCTCATACTCTCTGAACAAATAGAGAGCAGACAAGATTATT
* * * *
138574 GAAGATTATTCGTGTCTCATACTCTTTGAAGAAATAGAGAGCAGACACGATTCTT
1 GAAGATTATTCGTGTCTCATACTCTCTGAACAAATAGAGAGCAGACAAGATTATT
138629 -AGAGATTATTCG
1 GA-AGATTATTCG
138641 AGTTCCATAT
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 1 0.02
55 60 0.98
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (55 bp):
GAAGATTATTCGTGTCTCATACTCTCTGAACAAATAGAGAGCAGACAAGATTATT
Found at i:138649 original size:426 final size:422
Alignment explanation
Indices: 137572--138530 Score: 1500
Period size: 426 Copynumber: 2.3 Consensus size: 422
137562 GAAAAGATTA
137572 TTCGAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTAAGAAGAATATTTTCGAGTTCCA
1 TTCGAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTAAGAAG-A-ATTTTCGAGTTCCA
137637 TACTCCCTAGAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATTTTCGAGTTCTATACTTCCTGAA
64 TACTCCCTAGAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATTTTCGAGTTCTATACTTCCTGAA
*
137702 GAAAGAGGGAGCGAACCCGTTTGAAGATGTTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGA
129 AAAAGAGGGAGCGAACCCGTTTGAAGATGTTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGA
*
137767 -ATCCGTTCGCAGAAGATTTTCGAGTTCCATGCTCCCTAAAGAAAGAGGGGGCGAACCCGTTTGA
194 CA--CGTTCGCAGAAGATTTTCGAGTTCCATACTCCCTAAAGAAAGAGGGGGCGAACCCGTTTGA
* *
137831 AGATGTTCGAGTTTCATACTCCTTAAAGAAAGAAGGAGCGAATCCGTAAGAAGAAGATGTCCGAG
257 AGATGTTCGAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTAAGAAGAAGATGTCCGAG
*
137896 TTCCATACTCCTTAAAGAAAGAAGGAGTGAACCCGTAAGAAGAAGATGTTCGAGTTCCATACTCC
322 TTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGT-AGAAGAAGATGTTCGAGTTCCATACTCC
* *
137961 TTAAAGATAGAAGGAGCGAACCCGTAAGAAGAAGATG
386 CTAAAGAAAGAAGGAGCGAACCCGTAAGAAGAAGATG
* *
137998 TCCGAGTTCCATACTCCTTAAAGAAATAAGGAGCGAACCCGTAAGAAGAATATTTTCGAGTTCCA
1 TTCGAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTAAGAAG-A-ATTTTCGAGTTCCA
138063 TACTCCCTAGAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATTTTCGAGTTCTATACTTCCTGAA
64 TACTCCCTAGAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATTTTCGAGTTCTATACTTCCTGAA
*
138128 AAAAGAGGGTGCGAACCCGTTTGAAGATGTTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGA
129 AAAAGAGGGAGCGAACCCGTTTGAAGATGTTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCG-
*
138193 ACCCGTTCGCAGAAGATTTTCGAGTTCCATACTCCCTAAAGAAAGAGGGGGCGAACCCGTTTGAA
193 ACACGTTCGCAGAAGATTTTCGAGTTCCATACTCCCTAAAGAAAGAGGGGGCGAACCCGTTTGAA
*
138258 GATGTTCGAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTAAGAAGAAGATGTTCGAGT
258 GATGTTCGAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTAAGAAGAAGATGTCCGAGT
* * **
138323 TCTATACTTCC-TGAAGAAAG-AGGAAGCGAACCCGT-TTA-AAGATGTTCGAGTTCCATACTCC
323 TCCATAC-TCCTTAAAGAAAGAAGG-AGCGAACCCGTAGAAGAAGATGTTCGAGTTCCATACTCC
* ** * * *
138384 CTAAAGAAAGAGGGAGCGAACCCGTTCGCAGAATATT
386 CTAAAGAAAGAAGGAGCGAACCCGTAAGAAGAAGATG
* * * ** * *
138421 TTCGAGTGCCATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTTGAAG-ATGTTAGAGTTCCATA
1 TTCGAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTAAGAAGAATTTTCGAGTTCCATA
138485 CTCCCT-GAAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATTGTTCG
66 CTCCCTAG-AGAAAGAGGGAGCGAACCCGTAAGAAGAAGATT-TTCG
138531 TGTCTCATAC
Statistics
Matches: 496, Mismatches: 31, Indels: 17
0.91 0.06 0.03
Matches are distributed among these distances:
419 1 0.00
420 53 0.11
421 4 0.01
423 93 0.19
424 1 0.00
425 3 0.01
426 337 0.68
427 4 0.01
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.21
Consensus pattern (422 bp):
TTCGAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTAAGAAGAATTTTCGAGTTCCATA
CTCCCTAGAGAAAGAGGGAGCGAACCCGTAAGAAGAAGATTTTCGAGTTCTATACTTCCTGAAAA
AAGAGGGAGCGAACCCGTTTGAAGATGTTCGAGTTCCATACTCCCTAAAGAAAGAGGGAGCGACA
CGTTCGCAGAAGATTTTCGAGTTCCATACTCCCTAAAGAAAGAGGGGGCGAACCCGTTTGAAGAT
GTTCGAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTAAGAAGAAGATGTCCGAGTTCC
ATACTCCTTAAAGAAAGAAGGAGCGAACCCGTAGAAGAAGATGTTCGAGTTCCATACTCCCTAAA
GAAAGAAGGAGCGAACCCGTAAGAAGAAGATG
Found at i:157258 original size:19 final size:19
Alignment explanation
Indices: 157234--157332 Score: 135
Period size: 19 Copynumber: 5.2 Consensus size: 19
157224 TCGAACGGCT
*
157234 CGGTTCAGACCGATCCAGC
1 CGGTTCAGACCGGTCCAGC
157253 CGGTTCAGACCGGTCCAGC
1 CGGTTCAGACCGGTCCAGC
*
157272 CGGTTCAGACCGGTTCAGC
1 CGGTTCAGACCGGTCCAGC
*
157291 CGGTTCAGACCGGTCCAAC
1 CGGTTCAGACCGGTCCAGC
** * *
157310 CGACTAAGACCGGTCTAGC
1 CGGTTCAGACCGGTCCAGC
157329 CGGT
1 CGGT
157333 CAGCATGTTC
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 69 1.00
ACGTcount: A:0.19, C:0.34, G:0.29, T:0.17
Consensus pattern (19 bp):
CGGTTCAGACCGGTCCAGC
Found at i:157284 original size:10 final size:10
Alignment explanation
Indices: 157234--157304 Score: 94
Period size: 10 Copynumber: 7.4 Consensus size: 10
157224 TCGAACGGCT
157234 CGGTTCAGAC
1 CGGTTCAGAC
* *
157244 CGATCCAG-C
1 CGGTTCAGAC
157253 CGGTTCAGAC
1 CGGTTCAGAC
*
157263 CGGTCCAG-C
1 CGGTTCAGAC
157272 CGGTTCAGAC
1 CGGTTCAGAC
157282 CGGTTCAG-C
1 CGGTTCAGAC
157291 CGGTTCAGAC
1 CGGTTCAGAC
157301 CGGT
1 CGGT
157305 CCAACCGACT
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
9 24 0.46
10 28 0.54
ACGTcount: A:0.17, C:0.34, G:0.31, T:0.18
Consensus pattern (10 bp):
CGGTTCAGAC
Found at i:157311 original size:9 final size:9
Alignment explanation
Indices: 157252--157311 Score: 57
Period size: 10 Copynumber: 6.3 Consensus size: 9
157242 ACCGATCCAG
157252 CCGGTTCAGA
1 CCGGTTCA-A
* *
157262 CCGGTCCAG
1 CCGGTTCAA
157271 CCGGTTCAGA
1 CCGGTTCA-A
*
157281 CCGGTTCAG
1 CCGGTTCAA
157290 CCGGTTCAGA
1 CCGGTTCA-A
*
157300 CCGGTCCAA
1 CCGGTTCAA
157309 CCG
1 CCG
157312 ACTAAGACCG
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
9 19 0.46
10 22 0.54
ACGTcount: A:0.17, C:0.37, G:0.30, T:0.17
Consensus pattern (9 bp):
CCGGTTCAA
Found at i:158750 original size:21 final size:21
Alignment explanation
Indices: 158724--158766 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
158714 ACTTAAAATA
*
158724 TGCATCGATGCATTGCTACAG
1 TGCATCGATGCACTGCTACAG
158745 TGCATCGATGCACTGCTACAG
1 TGCATCGATGCACTGCTACAG
158766 T
1 T
158767 AATTTTCGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (21 bp):
TGCATCGATGCACTGCTACAG
Found at i:159222 original size:44 final size:44
Alignment explanation
Indices: 159159--160345 Score: 1465
Period size: 43 Copynumber: 27.3 Consensus size: 44
159149 TATCAAACTT
* *
159159 CTTACCATTTATCCCATAAGCTCGTAAGCTTATTTTACTAATATA
1 CTTACCA-TTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
* *
159204 CTTATCATTATTCCATAAGCTCATAAGCTTATTTTACCAATATA
1 CTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
* * * * *
159248 CTTACCATTATACTATAAGCTCGTAAACTTATTTTA-CATTCTA
1 CTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
* * * *
159291 CTTACCATTTTTCTATAAGCTCTTAAGCCTATTTT-CCAATATA
1 CTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
* * *
159334 ATTACAATTTTTCCATAAGCTCGTAAGCTTATTTTA-CAATATA
1 CTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
*
159377 CTTACCATT-TTCCATAAGCTTGTAAGCTTATTTTACCAATATA
1 CTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
* *
159420 ATTACCATTATTTCATAAGCTCGTAAGCTTATTTTACCAATATA
1 CTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
* * * *
159464 CTCATCATTATTTCATAAGCTCTTAAGCTTATTTTACCAATATA
1 CTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
* *
159508 CTTACCATTTTTCCATAAGCTCTTAAGCTTATTTTACCAATATA
1 CTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
* * *
159552 CTTACCATTTTTCCATAAGCTCTTAAGCTTATTTTA-CAATCTA
1 CTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
* *
159595 CTTACCATTTTTCCATAAGCTCGTAAGCTTATTTTA-CAATCTA
1 CTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
* * * * *
159638 CTTACTATTTTTCTATAAGCTCTTAAGCTTATTTTA-CAATCTA
1 CTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
* *
159681 CTTACCATTTTTCCATAAGCTCGTAAGCTTATTTTA-CAATCTA
1 CTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
* * * *
159724 CTTACTATTTTTCTATAAGCTCGTAAGCTTATTTTA-TAATATA
1 CTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
* * *
159767 CTTACCATTTTTCCATAAGCTCTTAAGCTTATTTTA-CAATCTA
1 CTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
* * *
159810 CTTACTATTTTTCTATAAGCTCGTAAGCTTATTTTA-CAATATA
1 CTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
* * *
159853 CTTACCATTTTTCCATAAGCTCTTAAGCTTATTTTA-CAATCTA
1 CTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
* * *
159896 CTTACTATTTTTCTATAAGCTCGTAAGCTTATTTTA-CAATATA
1 CTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
* *
159939 TTTACCATTATTTCATAAGCTCGTAAGCTTATTTTACCAATATA
1 CTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
**
159983 -TTCATTATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
1 CTT-ACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
* * * *
160027 GTCATCATTATTCCATAAGCTCGTAAGCTTATTTTACCATTATA
1 CTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
* * *
160071 -TTCATCATTATTCCATAAGCTCATAAGCTTATTTTACCAATCTA
1 CTT-ACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
** * *
160115 CTCCCCACTATTTCATAAGCTCGTAAGCTTATTTTA-CAATTATA
1 CTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAA-TATA
* * *
160159 -TTCATCATTATTCCATAAGCTCGTAAGTTTATTTTACCAATCTA
1 CTT-ACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
** *
160203 CTCCCCATTATTTCATAAGCTCGTAAGCTTATTTTA-CAATATA
1 CTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
* * * *
160246 CTTATCATTTTTCCATAAGCTAGTAAGCTTATTTTACCAATATG
1 CTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
* * *
160290 CATACCATTATTCTATAAGCTCGTAAGATTATTTTACCAATATA
1 CTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
*
160334 CTTATCATTATT
1 CTTACCATTATT
160346 GCATCACTAA
Statistics
Matches: 1011, Mismatches: 117, Indels: 29
0.87 0.10 0.03
Matches are distributed among these distances:
42 25 0.02
43 495 0.49
44 479 0.47
45 12 0.01
ACGTcount: A:0.30, C:0.20, G:0.06, T:0.43
Consensus pattern (44 bp):
CTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
Found at i:160015 original size:21 final size:21
Alignment explanation
Indices: 159990--160059 Score: 56
Period size: 21 Copynumber: 3.2 Consensus size: 21
159980 ATATTCATTA
159990 TTATTCCATAAGCTCGTAAGC
1 TTATTCCATAAGCTCGTAAGC
* *
160011 TTATTTTACCAATATAG-TCATCA--
1 TTA--TT-CC-ATA-AGCTCGTAAGC
160034 TTATTCCATAAGCTCGTAAGC
1 TTATTCCATAAGCTCGTAAGC
160055 TTATT
1 TTATT
160060 TTACCATTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 16
0.65 0.07 0.28
Matches are distributed among these distances:
18 2 0.05
19 7 0.19
20 2 0.05
21 10 0.27
23 5 0.14
24 2 0.05
25 7 0.19
26 2 0.05
ACGTcount: A:0.30, C:0.20, G:0.10, T:0.40
Consensus pattern (21 bp):
TTATTCCATAAGCTCGTAAGC
Found at i:160726 original size:118 final size:118
Alignment explanation
Indices: 160471--161223 Score: 1036
Period size: 118 Copynumber: 6.4 Consensus size: 118
160461 TTTGAATTAT
* ** ** ** *
160471 CATATACTCAATATGATTTCCTTCTCATTTTAGCACACAAAGTGC-CC-TATTCAAGAATTCATA
1 CATATATTCAATATGATTTCCTTAACATTTTAGCACACTTAGTGCTCCATA-TGGA-AATACATA
* * ** *
160534 C-CATTTGTATGATTCTTTTACCATTTTTAGCACATATAATGCCCTATATGGAAATC
64 CAC-TTAGTATGATCCCCTTACCA-TTTTAGCACATATAATGCCCTATTTGGAAATC
*
160590 CATATATTCAATATGATTTCCTTAACATTTTAGCACACTTAGTGCTCCACATGGAAATACATACA
1 CATATATTCAATATGATTTCCTTAACATTTTAGCACACTTAGTGCTCCATATGGAAATACATACA
* * * *
160655 TTTAGTATGATCCCCTTATCATTTTAGCACACATAATGCCCTATTTTGAAATC
66 CTTAGTATGATCCCCTTACCATTTTAGCACATATAATGCCCTATTTGGAAATC
* *
160708 CATATATTCAATATGATTTCCTTAACGTTTTAGCACAATTAGTGCTCCATATGGAAATACATACA
1 CATATATTCAATATGATTTCCTTAACATTTTAGCACACTTAGTGCTCCATATGGAAATACATACA
*
160773 CTTAGTATGATCCCCTTACTATTTTAGCACATATAATGCCCTATTTGGAAATC
66 CTTAGTATGATCCCCTTACCATTTTAGCACATATAATGCCCTATTTGGAAATC
* *
160826 CATATATTCAATATGATTTCCTTAACGTTTTAGCACAATTAGTGCTCCATATGGAAATACATACA
1 CATATATTCAATATGATTTCCTTAACATTTTAGCACACTTAGTGCTCCATATGGAAATACATACA
160891 CTTAGTATGATCCCCTTACCATTTTAGCACATATAATGCCCTATTTGGAAATC
66 CTTAGTATGATCCCCTTACCATTTTAGCACATATAATGCCCTATTTGGAAATC
* *
160944 CATATATTCAATATGATTTCCTTAACGTTTTAGCACACTTAGTGCTCCATATGGAAATCCATACA
1 CATATATTCAATATGATTTCCTTAACATTTTAGCACACTTAGTGCTCCATATGGAAATACATACA
* *
161009 CTTAGTATGATTCCCTTACCATTTTAGCACATATAATGCCCTATGTGGAAATC
66 CTTAGTATGATCCCCTTACCATTTTAGCACATATAATGCCCTATTTGGAAATC
* *
161062 CATATATTCAATATGATTTCCTTAACATTTTAGCATACTTAGTGCTCCATATGGAAATCCATACA
1 CATATATTCAATATGATTTCCTTAACATTTTAGCACACTTAGTGCTCCATATGGAAATACATACA
** * * *
161127 CTTAGTATGAT-TTCTTATCATTTTAGCACAT-TCAGTGCTCC-ATATGGAAATC
66 CTTAGTATGATCCCCTTACCATTTTAGCACATAT-AATGC-CCTATTTGGAAATC
* * * *
161179 CATACACTT-AGTATGATTTCCTTATCATTTTTGCACA-TATAGTGC
1 CATATA-TTCAATATGATTTCCTTAACATTTTAGCACACT-TAGTGC
161224 CATTTGGTAA
Statistics
Matches: 584, Mismatches: 43, Indels: 16
0.91 0.07 0.02
Matches are distributed among these distances:
116 2 0.00
117 66 0.11
118 448 0.77
119 63 0.11
120 4 0.01
121 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.11, T:0.37
Consensus pattern (118 bp):
CATATATTCAATATGATTTCCTTAACATTTTAGCACACTTAGTGCTCCATATGGAAATACATACA
CTTAGTATGATCCCCTTACCATTTTAGCACATATAATGCCCTATTTGGAAATC
Found at i:161243 original size:59 final size:58
Alignment explanation
Indices: 160558--161224 Score: 649
Period size: 59 Copynumber: 11.3 Consensus size: 58
160548 CTTTTACCAT
* * *
160558 TTTTAGCACATATAATGCCCTATATGGAAATCCATATA-TTCAATATGATTTCCTTAACA
1 TTTTAGCACATATAGTGCCC-ATATGGAAATCCATACACTT-AGTATGATTTCCTTAACA
* * * ** *
160617 TTTTAGCACACT-TAGTGCTCCACATGGAAATACATACATTTAGTATGATCCCCTTATCA
1 TTTTAGCACA-TATAGTGC-CCATATGGAAATCCATACACTTAGTATGATTTCCTTAACA
* * * * * * *
160676 TTTTAGCACACATAATGCCCTATTTTGAAATCCATATA-TTCAATATGATTTCCTTAACG
1 TTTTAGCACATATAGTGCCC-ATATGGAAATCCATACACTT-AGTATGATTTCCTTAACA
* **
160735 TTTTAGCACA-ATTAGTGCTCCATATGGAAATACATACACTTAGTATGATCCCCTT-ACTA
1 TTTTAGCACATA-TAGTGC-CCATATGGAAATCCATACACTTAGTATGATTTCCTTAAC-A
* * * * *
160794 TTTTAGCACATATAATGCCCTATTTGGAAATCCATATA-TTCAATATGATTTCCTTAACG
1 TTTTAGCACATATAGTGCCC-ATATGGAAATCCATACACTT-AGTATGATTTCCTTAACA
* ** *
160853 TTTTAGCACA-ATTAGTGCTCCATATGGAAATACATACACTTAGTATGATCCCCTTACCA
1 TTTTAGCACATA-TAGTGC-CCATATGGAAATCCATACACTTAGTATGATTTCCTTAACA
* * * * *
160912 TTTTAGCACATATAATGCCCTATTTGGAAATCCATATA-TTCAATATGATTTCCTTAACG
1 TTTTAGCACATATAGTGCCC-ATATGGAAATCCATACACTT-AGTATGATTTCCTTAACA
* *
160971 TTTTAGCACACT-TAGTGCTCCATATGGAAATCCATACACTTAGTATGATTCCCTTACCA
1 TTTTAGCACA-TATAGTGC-CCATATGGAAATCCATACACTTAGTATGATTTCCTTAACA
* * * *
161030 TTTTAGCACATATAATGCCCTATGTGGAAATCCATATA-TTCAATATGATTTCCTTAACA
1 TTTTAGCACATATAGTGCCC-ATATGGAAATCCATACACTT-AGTATGATTTCCTTAACA
* *
161089 TTTTAGCATACT-TAGTGCTCCATATGGAAATCCATACACTTAGTATGATTT-CTTATCA
1 TTTTAGCACA-TATAGTGC-CCATATGGAAATCCATACACTTAGTATGATTTCCTTAACA
*
161147 TTTTAGCACAT-TCAGTGCTCCATATGGAAATCCATACACTTAGTATGATTTCCTTATCA
1 TTTTAGCACATAT-AGTGC-CCATATGGAAATCCATACACTTAGTATGATTTCCTTAACA
*
161206 TTTTTGCACATATAGTGCC
1 TTTTAGCACATATAGTGCC
161225 ATTTGGTAAT
Statistics
Matches: 500, Mismatches: 76, Indels: 65
0.78 0.12 0.10
Matches are distributed among these distances:
57 2 0.00
58 75 0.15
59 395 0.79
60 28 0.06
ACGTcount: A:0.31, C:0.21, G:0.11, T:0.37
Consensus pattern (58 bp):
TTTTAGCACATATAGTGCCCATATGGAAATCCATACACTTAGTATGATTTCCTTAACA
Found at i:163788 original size:16 final size:16
Alignment explanation
Indices: 163749--163788 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
163739 CTTATCGTCG
*
163749 TCTCAAACCCCTAAAA
1 TCTCAAATCCCTAAAA
* *
163765 TTTTAAATCCCTAAAA
1 TCTCAAATCCCTAAAA
163781 TCTCAAAT
1 TCTCAAAT
163789 AATCAATCCC
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.42, C:0.28, G:0.00, T:0.30
Consensus pattern (16 bp):
TCTCAAATCCCTAAAA
Found at i:164034 original size:98 final size:97
Alignment explanation
Indices: 163858--164054 Score: 295
Period size: 98 Copynumber: 2.0 Consensus size: 97
163848 TAAATTATCA
*
163858 AATAAAAAGTATTAGAAAAATTTAAATTACAAAAAACTTAAAATTTTTAAGAAACAACTGTTTCT
1 AATAAAAAGTATTAGAAAAAATTAAATTACAAAAAACTTAAAATTTTTAAGAAACAACTGTTTCT
*
163923 ATCAATCTCGTGAGTCGATCCCAGAGCATACC
66 ATCAACCTCGTGAGTCGATCCCAGAGCATACC
* * * * * *
163955 AATAAAAAGTATTAGAAAAAATTAAATTACATAAAAATTTAAATTTTTTAAGAGATAATTGTTTT
1 AATAAAAAGTATTAGAAAAAATTAAATTACA-AAAAACTTAAAATTTTTAAGAAACAACTGTTTC
* *
164020 TATCAACCTTGTGAGTCGATCCCGGAGCATACC
65 TATCAACCTCGTGAGTCGATCCCAGAGCATACC
164053 AA
1 AA
164055 CAATGTTCAG
Statistics
Matches: 89, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
97 30 0.34
98 59 0.66
ACGTcount: A:0.45, C:0.13, G:0.11, T:0.31
Consensus pattern (97 bp):
AATAAAAAGTATTAGAAAAAATTAAATTACAAAAAACTTAAAATTTTTAAGAAACAACTGTTTCT
ATCAACCTCGTGAGTCGATCCCAGAGCATACC
Found at i:171048 original size:17 final size:17
Alignment explanation
Indices: 171023--171059 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
171013 GATGATTAAT
171023 TTAGATAAACTTAATTA
1 TTAGATAAACTTAATTA
*
171040 TTAGTTAAACTTAATTA
1 TTAGATAAACTTAATTA
171057 TTA
1 TTA
171060 AAAATCTAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.46
Consensus pattern (17 bp):
TTAGATAAACTTAATTA
Found at i:171152 original size:13 final size:13
Alignment explanation
Indices: 171134--171160 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
171124 TAATTTAAAA
171134 TTTAAATGATTCT
1 TTTAAATGATTCT
171147 TTTAAATGATTCT
1 TTTAAATGATTCT
171160 T
1 T
171161 ATGGGTTGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.56
Consensus pattern (13 bp):
TTTAAATGATTCT
Found at i:172159 original size:21 final size:22
Alignment explanation
Indices: 172135--172175 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
172125 TCTTATTTTC
*
172135 TTTCCTT-TTTTTTTTCAAAAT
1 TTTCCTTATTATTTTTCAAAAT
172156 TTTCCTTATTATTTTTCAAA
1 TTTCCTTATTATTTTTCAAA
172176 TGTTATATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.22, C:0.15, G:0.00, T:0.63
Consensus pattern (22 bp):
TTTCCTTATTATTTTTCAAAAT
Found at i:172512 original size:20 final size:21
Alignment explanation
Indices: 172484--172524 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
172474 TTTCTTATTA
* *
172484 TTTATATTTTATTAATTTAAT
1 TTTATATTTAATAAATTTAAT
172505 TTTA-ATTTAATAAATTTAAT
1 TTTATATTTAATAAATTTAAT
172525 CTACTAATCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTATATTTAATAAATTTAAT
Found at i:187585 original size:2 final size:2
Alignment explanation
Indices: 187578--187604 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
187568 GCTTGTTACC
187578 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
187605 CCCATAACAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:192160 original size:18 final size:19
Alignment explanation
Indices: 192137--192174 Score: 69
Period size: 18 Copynumber: 2.1 Consensus size: 19
192127 CGGTTGTTCT
192137 GGAACTGCTGCT-GGACTG
1 GGAACTGCTGCTGGGACTG
192155 GGAACTGCTGCTGGGACTG
1 GGAACTGCTGCTGGGACTG
192174 G
1 G
192175 CGGGGCTGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.16, C:0.21, G:0.42, T:0.21
Consensus pattern (19 bp):
GGAACTGCTGCTGGGACTG
Found at i:199345 original size:30 final size:30
Alignment explanation
Indices: 199282--199345 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
199272 AACCAACATT
* * *
199282 AACTTTTTAAAATTATCATTTTGGTCTCTA
1 AACTTTTTAAAATTATCACTTTGGTCACCA
*
199312 AACTTTTTAAAGTTTAT-ACTTTGGTCACCA
1 AACTTTTTAAA-ATTATCACTTTGGTCACCA
199342 AACT
1 AACT
199346 GTACAAAATC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 25 0.86
31 4 0.14
ACGTcount: A:0.31, C:0.16, G:0.08, T:0.45
Consensus pattern (30 bp):
AACTTTTTAAAATTATCACTTTGGTCACCA
Found at i:200990 original size:60 final size:60
Alignment explanation
Indices: 200913--201025 Score: 172
Period size: 60 Copynumber: 1.9 Consensus size: 60
200903 AATGGTCTCT
* * * *
200913 GACTATAGGGTGATGCTTTGTTGAGTCTCTCGACTATTAAAAGTTATAAAATGATCTTTC
1 GACTATAGGGTGATGCTTTGTTCAGTCCCCCGACTATTAAAAGTTACAAAATGATCTTTC
* *
200973 GACTATAGGGTGTTGCTTTGTTCAGTCCCCCGACTATTGAAAGTTACAAAATG
1 GACTATAGGGTGATGCTTTGTTCAGTCCCCCGACTATTAAAAGTTACAAAATG
201026 GTTATCCAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
60 47 1.00
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.35
Consensus pattern (60 bp):
GACTATAGGGTGATGCTTTGTTCAGTCCCCCGACTATTAAAAGTTACAAAATGATCTTTC
Found at i:201038 original size:60 final size:60
Alignment explanation
Indices: 200914--201038 Score: 153
Period size: 60 Copynumber: 2.1 Consensus size: 60
200904 ATGGTCTCTG
* * * * * *
200914 ACTATAGGGTGATGCTTTGTTGAGTCTCTCGACTATTAAAAGTTATAAAATGATCTTTCG
1 ACTATAGGGTGATGCTTTGTTCAGTCCCCCGACTATTAAAAGTTACAAAATGATCTTCCA
* * *
200974 ACTATAGGGTGTTGCTTTGTTCAGTCCCCCGACTATTGAAAGTTACAAAATGGT-TATCCA
1 ACTATAGGGTGATGCTTTGTTCAGTCCCCCGACTATTAAAAGTTACAAAATGATCT-TCCA
201034 ACTAT
1 ACTAT
201039 TTAGTATGTT
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
59 1 0.02
60 54 0.98
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (60 bp):
ACTATAGGGTGATGCTTTGTTCAGTCCCCCGACTATTAAAAGTTACAAAATGATCTTCCA
Found at i:201345 original size:60 final size:60
Alignment explanation
Indices: 201226--201346 Score: 147
Period size: 60 Copynumber: 2.0 Consensus size: 60
201216 TCAGATGGTC
* * * * * *
201226 ATTTTGTAACTTTTAATAGTTGGAGGACTTGACAAAGAAACATCTTATAGTTGAAGGACT
1 ATTTTATAACTTTTAATAGTCGGAGGACTTAACAAAGAAACACCTTATAATCGAAGGACT
*
201286 ATTTTATAACTTTTAATAGTC-GAGAGACTTAACAAA-ACAACACCTTATAATCGAGGGACT
1 ATTTTATAACTTTTAATAGTCGGAG-GACTTAACAAAGA-AACACCTTATAATCGAAGGACT
201346 A
1 A
201347 CTTGTGTAGT
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
59 4 0.08
60 48 0.92
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (60 bp):
ATTTTATAACTTTTAATAGTCGGAGGACTTAACAAAGAAACACCTTATAATCGAAGGACT
Found at i:207524 original size:10 final size:10
Alignment explanation
Indices: 207511--207541 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
207501 ACAAACGGAT
207511 ATAAACGAAC
1 ATAAACGAAC
207521 ATAAACGAAC
1 ATAAACGAAC
*
207531 GTAAACGAAC
1 ATAAACGAAC
207541 A
1 A
207542 CATATGAACG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.58, C:0.19, G:0.13, T:0.10
Consensus pattern (10 bp):
ATAAACGAAC
Found at i:207550 original size:20 final size:20
Alignment explanation
Indices: 207512--207553 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
207502 CAAACGGATA
*
207512 TAAACGAACATAAACGAACG
1 TAAACGAACACAAACGAACG
* *
207532 TAAACGAACACATATGAACG
1 TAAACGAACACAAACGAACG
207552 TA
1 TA
207554 CATAAATGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.52, C:0.19, G:0.14, T:0.14
Consensus pattern (20 bp):
TAAACGAACACAAACGAACG
Found at i:207768 original size:24 final size:24
Alignment explanation
Indices: 207723--207800 Score: 84
Period size: 24 Copynumber: 3.2 Consensus size: 24
207713 GATTGAGCTA
* * * *
207723 AACATAAATGAGCGCACATAAATG
1 AACATAAACGAACGAACATAAACG
*
207747 AACATAAACGAACGAACGTAAACG
1 AACATAAACGAACGAACATAAACG
* * *
207771 AACATAAATGTATGAACATAAACG
1 AACATAAACGAACGAACATAAACG
207795 AACATA
1 AACATA
207801 TTACCGAACG
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.54, C:0.17, G:0.14, T:0.15
Consensus pattern (24 bp):
AACATAAACGAACGAACATAAACG
Found at i:208979 original size:29 final size:29
Alignment explanation
Indices: 208941--209076 Score: 218
Period size: 29 Copynumber: 4.7 Consensus size: 29
208931 AATTCGAAAA
* * *
208941 TGGTGATATTTTGGGAAATAATTCGGTTT
1 TGGTGCTATTCTGGTAAATAATTCGGTTT
* *
208970 TCGTGCTATTCTGGTAAATAATTCGATTT
1 TGGTGCTATTCTGGTAAATAATTCGGTTT
208999 TGGTGCTATTCTGGTAAATAATTCGGTTT
1 TGGTGCTATTCTGGTAAATAATTCGGTTT
*
209028 TTGTGCTATTCTGGTAAATAATTCGGTTT
1 TGGTGCTATTCTGGTAAATAATTCGGTTT
209057 TGGTGCTATTCTGGTAAATA
1 TGGTGCTATTCTGGTAAATA
209077 GTTAGAAAGG
Statistics
Matches: 98, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 98 1.00
ACGTcount: A:0.23, C:0.10, G:0.23, T:0.45
Consensus pattern (29 bp):
TGGTGCTATTCTGGTAAATAATTCGGTTT
Found at i:211779 original size:24 final size:24
Alignment explanation
Indices: 211673--211781 Score: 67
Period size: 24 Copynumber: 4.5 Consensus size: 24
211663 GAATATTTTA
* * *
211673 TCTGATTTCTTATTTGAATTCTGT
1 TCTGATTTCTGATCTGAATTATGT
* ** *
211697 TTTGACATCTGATCTGAAATCA-GT
1 TCTGATTTCTGATCTG-AATTATGT
* * * * * *
211721 TCTGATTCCTAACCTGGATTCTAT
1 TCTGATTTCTGATCTGAATTATGT
*
211745 TCTGATATCTGATCTGAATTATGT
1 TCTGATTTCTGATCTGAATTATGT
*
211769 TTTGATTTCTGAT
1 TCTGATTTCTGAT
211782 ATCTCCGTTT
Statistics
Matches: 57, Mismatches: 26, Indels: 4
0.66 0.30 0.05
Matches are distributed among these distances:
23 2 0.04
24 52 0.91
25 3 0.05
ACGTcount: A:0.22, C:0.16, G:0.15, T:0.48
Consensus pattern (24 bp):
TCTGATTTCTGATCTGAATTATGT
Found at i:213406 original size:3 final size:3
Alignment explanation
Indices: 213398--213424 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
213388 CTCCGACCCT
213398 CTC CTC CTC CTC CTC CTC CTC CTC CTC
1 CTC CTC CTC CTC CTC CTC CTC CTC CTC
213425 TGGTCCATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33
Consensus pattern (3 bp):
CTC
Found at i:216179 original size:23 final size:22
Alignment explanation
Indices: 216153--216195 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
216143 TCTCAATGGT
* *
216153 TCTATCTTTATGACACGATTTCC
1 TCTACCTTCATGACAC-ATTTCC
216176 TCTACCTTCATGACACATTT
1 TCTACCTTCATGACACATTT
216196 TTTTCTATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.23, C:0.28, G:0.07, T:0.42
Consensus pattern (22 bp):
TCTACCTTCATGACACATTTCC
Found at i:230494 original size:52 final size:52
Alignment explanation
Indices: 230419--231236 Score: 981
Period size: 53 Copynumber: 15.5 Consensus size: 52
230409 CTCTCTATCG
** * * *
230419 CTTCAGGGAGTAAGAACTCGAACAATCTTCTGT-CTATGAGTCTGCTCTCTCTT
1 CTTCAGGGAGT-AGAACTCGAACAATAATCT-TCCTACGGGTCTGCTCTCTTTT
* ** * *
230472 CTTCAGGGAGTAGAACTCGAACAGTCTTCTT-CTCACGGG-CTCGATCTCTCTT
1 CTTCAGGGAGTAGAACTCGAACAATAATCTTCCT-ACGGGTCT-GCTCTCTTTT
** * *
230524 CTTCAGGGAGTAGAACTCGAACAATCTTCTGCCTACGGGTCCGCTCTCTCTTT
1 CTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCTGCTCTCT-TTT
* * * *
230577 CCTCAGGGAGTAGAACTCGAACAATCATCTGCCTATGGG-CTTGCTCTCTCTTT
1 CTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTC-TGCTCTCT-TTT
* ** *
230630 CTTCAGGGAGTAGAACTCGAAAAATCTTCTTCCTACGGGTCTGTTCTCTATTT
1 CTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCTGCTCTCT-TTT
* * * *
230683 CTTCAGGGAGTAAGAACTCAAAAAATAATCTTCTTACGGGTCCGCTCTCTTTTT
1 CTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCTGCTCTC-TTTT
* * * *
230737 CTTCAGGGAGTAGAACTCGAACAGTAATCTTCCTACGGGTCCGCCCTATTTT
1 CTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCTGCTCTCTTTT
* *
230789 CTTCAAGGAGTAGAACTCGAACAGTAATCTTCCTACGGG-CTCGCTCTCTATTT
1 CTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCT-GCTCTCT-TTT
*
230842 CTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGG-CTCACTCTCTATTT
1 CTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCT-GCTCTCT-TTT
*
230896 CTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTAC-GGTCCGCTCTCTTTTT
1 CTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCTGCTCTC-TTTT
* * *
230949 CTTCAGGGAGTAGAACTCGAACAGTAATCTTCCTAC-GGTCTGCCCTATTTT
1 CTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCTGCTCTCTTTT
* * *
231000 CTTCAGGGAGTAAGAACTCGAAGAATAATCTTCCTACGGGTCTGCCCTATTTT
1 CTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCTGCTCTCTTTT
231053 CTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGGT-TCGCTCTCTTTTT
1 CTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCT-GCTCTC-TTTT
*
231107 CTTCAGGGAGTAGAACTC-AACAATAATCTTCCTACGGGTCCGCTCTCTTTTT
1 CTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCTGCTCTC-TTTT
*
231159 CTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTTTTT
1 CTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCTGCTCTC-TTTT
231212 CTTCAGGGAGTAGAACTCGAACAAT
1 CTTCAGGGAGTAGAACTCGAACAAT
231237 CTTCTGTTGC
Statistics
Matches: 694, Mismatches: 51, Indels: 40
0.88 0.06 0.05
Matches are distributed among these distances:
51 21 0.03
52 224 0.32
53 308 0.44
54 140 0.20
55 1 0.00
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (52 bp):
CTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCTGCTCTCTTTT
Found at i:230596 original size:105 final size:104
Alignment explanation
Indices: 230419--231236 Score: 997
Period size: 105 Copynumber: 7.7 Consensus size: 104
230409 CTCTCTATCG
** * * * *
230419 CTTCAGGGAGTAAGAACTCGAACAATCTTCTGT-CTATGAGTCTGCTCTCTCTTCTTCAGGGAGT
1 CTTCAGGGAGT-AGAACTCGAACAATAATCT-TCCTACGGGTCCGCTCTCTTTTCTTCAGGGAGT
* ** * *
230483 AGAACTCGAACAGTCTTCTT-CTCACGGGCTCGATCTCTCTT
64 AGAACTCGAACAATAATCTTCCT-ACGGGCTCGCTCTCTTTT
** * *
230524 CTTCAGGGAGTAGAACTCGAACAATCTTCTGCCTACGGGTCCGCTCTCTCTTTCCTCAGGGAGTA
1 CTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCT-TTTCTTCAGGGAGTA
* * * *
230589 GAACTCGAACAATCATCTGCCTATGGGCTTGCTCTCTCTTT
65 GAACTCGAACAATAATCTTCCTACGGGCTCGCTCTCT-TTT
* ** * *
230630 CTTCAGGGAGTAGAACTCGAAAAATCTTCTTCCTACGGGTCTGTTCTCTATTTCTTCAGGGAGTA
1 CTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCT-TTTCTTCAGGGAGT-
* * *
230695 AGAACTCAAAAAATAATCTTCTTACGGG-TCCGCTCTCTTTTT
64 AGAACTCGAACAATAATCTTCCTACGGGCT-CGCTCTC-TTTT
* * * *
230737 CTTCAGGGAGTAGAACTCGAACAGTAATCTTCCTACGGGTCCGCCCTATTTTCTTCAAGGAGTAG
1 CTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTTTTCTTCAGGGAGTAG
*
230802 AACTCGAACAGTAATCTTCCTACGGGCTCGCTCTCTATTT
66 AACTCGAACAATAATCTTCCTACGGGCTCGCTCTCT-TTT
*
230842 CTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGG-CTCACTCTCTATTTCTTCAGGGAG
1 CTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTC-CGCTCTCT-TTTCTTCAGGGAG
*
230906 TAAGAACTCGAACAATAATCTTCCTACGGTC-CGCTCTCTTTTT
63 T-AGAACTCGAACAATAATCTTCCTACGGGCTCGCTCTC-TTTT
* * * *
230949 CTTCAGGGAGTAGAACTCGAACAGTAATCTTCCTAC-GGTCTGCCCTATTTTCTTCAGGGAGTAA
1 CTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTTTTCTTCAGGGAGT-A
* * *
231013 GAACTCGAAGAATAATCTTCCTACGGG-TCTGCCCTATTTT
65 GAACTCGAACAATAATCTTCCTACGGGCTC-GCTCTCTTTT
*
231053 CTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGGTTCGCTCTCTTTTTCTTCAGGGAGT
1 CTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTC-TTTTCTTCAGGGAGT
231118 AGAACTC-AACAATAATCTTCCTACGGG-TCCGCTCTCTTTTT
64 AGAACTCGAACAATAATCTTCCTACGGGCT-CGCTCTC-TTTT
231159 CTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTTTTTCTTCAGGGAGTA
1 CTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTC-TTTTCTTCAGGGAGTA
231224 GAACTCGAACAAT
65 GAACTCGAACAAT
231237 CTTCTGTTGC
Statistics
Matches: 626, Mismatches: 64, Indels: 45
0.85 0.09 0.06
Matches are distributed among these distances:
104 91 0.15
105 215 0.34
106 170 0.27
107 121 0.19
108 29 0.05
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (104 bp):
CTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTTTTCTTCAGGGAGTAG
AACTCGAACAATAATCTTCCTACGGGCTCGCTCTCTTTT
Found at i:231300 original size:37 final size:37
Alignment explanation
Indices: 231246--231329 Score: 107
Period size: 37 Copynumber: 2.3 Consensus size: 37
231236 TCTTCTGTTG
* *
231246 CTTCACTACCTCATTGTGAAGGC-TTCTGGATGATTTA
1 CTTCACTACCTCATTGTGAAGACTTTC-AGATGATTTA
* * *
231283 CTTCACTACTTCCTTGTGAAGACTTTCAGATGATTTG
1 CTTCACTACCTCATTGTGAAGACTTTCAGATGATTTA
231320 CTTCACTACC
1 CTTCACTACC
231330 CTTTCGTTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
37 37 0.93
38 3 0.08
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.38
Consensus pattern (37 bp):
CTTCACTACCTCATTGTGAAGACTTTCAGATGATTTA
Found at i:232652 original size:7 final size:7
Alignment explanation
Indices: 232597--232726 Score: 86
Period size: 7 Copynumber: 17.4 Consensus size: 7
232587 CTTTTATTTG
232597 TTTTTT-
1 TTTTTTC
*
232603 TTGTTT-
1 TTTTTTC
232609 TTTTTTC
1 TTTTTTC
232616 TTCTTCTTC
1 TT-TT-TTC
*
232625 TTTTCTC
1 TTTTTTC
232632 TTTTTCTTC
1 -TTTT-TTC
232641 TTTTTTC
1 TTTTTTC
232648 TTTTTTC
1 TTTTTTC
*
232655 ATTTTTC
1 TTTTTTC
232662 ATTTTTTTC
1 --TTTTTTC
232671 ATTTTTTC
1 -TTTTTTC
*
232679 -TATTTC
1 TTTTTTC
232685 ATTTTTTC
1 -TTTTTTC
232693 ATTTTTTTC
1 --TTTTTTC
*
232702 ATTTTTTT
1 -TTTTTTC
*
232710 TTTTTTT
1 TTTTTTC
232717 TTTTTTC
1 TTTTTTC
232724 TTT
1 TTT
232727 CATCTTCAAG
Statistics
Matches: 101, Mismatches: 13, Indels: 19
0.76 0.10 0.14
Matches are distributed among these distances:
6 15 0.15
7 36 0.36
8 30 0.30
9 20 0.20
ACGTcount: A:0.05, C:0.13, G:0.01, T:0.81
Consensus pattern (7 bp):
TTTTTTC
Found at i:232652 original size:8 final size:8
Alignment explanation
Indices: 232598--232726 Score: 85
Period size: 8 Copynumber: 16.4 Consensus size: 8
232588 TTTTATTTGT
*
232598 TTTTTTTG
1 TTTTTTTC
232606 TTTTTTT-
1 TTTTTTTC
*
232613 TTCTTCTTC
1 TT-TTTTTC
232622 TTCTTTTCTC
1 TT-TTTT-TC
232632 TTTTTCTTC
1 TTTTT-TTC
232641 -TTTTTTC
1 TTTTTTTC
232648 -TTTTTTC
1 TTTTTTTC
*
232655 -ATTTTTC
1 TTTTTTTC
232662 ATTTTTTTC
1 -TTTTTTTC
*
232671 ATTTTTTC
1 TTTTTTTC
*
232679 --TATTTC
1 TTTTTTTC
*
232685 ATTTTTTC
1 TTTTTTTC
232693 ATTTTTTTC
1 -TTTTTTTC
*
232702 ATTTTTT-
1 TTTTTTTC
232709 TTTTTTT-
1 TTTTTTTC
232716 TTTTTTTC
1 TTTTTTTC
232724 TTT
1 TTT
232727 CATCTTCAAG
Statistics
Matches: 101, Mismatches: 10, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
6 5 0.05
7 31 0.31
8 36 0.36
9 24 0.24
10 5 0.05
ACGTcount: A:0.05, C:0.13, G:0.01, T:0.81
Consensus pattern (8 bp):
TTTTTTTC
Found at i:232653 original size:9 final size:9
Alignment explanation
Indices: 232599--232727 Score: 57
Period size: 10 Copynumber: 13.0 Consensus size: 9
232589 TTTATTTGTT
*
232599 TTTTTTGTTT
1 TTTTTT-TTC
232609 TTTTTTCTTC
1 TTTTTT-TTC
232619 TTCTTCTTTTC
1 TT-TT-TTTTC
232630 TCTTTTTCTTC
1 T-TTTTT-TTC
*
232641 TTTTTTCTTT
1 TTTTTT-TTC
232651 TTTCATTTTTC
1 TTT--TTTTTC
*
232662 ATTTTTTTC
1 TTTTTTTTC
232671 ATTTTTTCTAT-
1 -TTTTTT-T-TC
232682 TTCATTTTTTC
1 TT--TTTTTTC
*
232693 ATTTTTTTC
1 TTTTTTTTC
232702 ATTTTTTTT-
1 -TTTTTTTTC
232711 TTTTTTTT-
1 TTTTTTTTC
*
232719 TTTTCTTTC
1 TTTTTTTTC
232728 ATCTTCAAGC
Statistics
Matches: 96, Mismatches: 9, Indels: 29
0.72 0.07 0.22
Matches are distributed among these distances:
8 15 0.16
9 13 0.14
10 38 0.40
11 19 0.20
12 11 0.11
ACGTcount: A:0.05, C:0.14, G:0.01, T:0.80
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:232667 original size:31 final size:31
Alignment explanation
Indices: 232609--232715 Score: 123
Period size: 31 Copynumber: 3.4 Consensus size: 31
232599 TTTTTTGTTT
232609 TTTTTTCTTCTTCTTC-TTTTCTC-TTTTTCTTC-
1 TTTTTTCTT-TT-TTCATTTT-TCATTTTT-TTCA
232641 TTTTTTCTTTTTTCATTTTTCATTTTTTTCA
1 TTTTTTCTTTTTTCATTTTTCATTTTTTTCA
*
232672 TTTTTTC-TATTTCATTTTTTCATTTTTTTCA
1 TTTTTTCTTTTTTCA-TTTTTCATTTTTTTCA
*
232703 TTTTTTTTTTTTT
1 TTTTTTCTTTTTT
232716 TTTTTTTCTT
Statistics
Matches: 67, Mismatches: 3, Indels: 10
0.84 0.04 0.12
Matches are distributed among these distances:
30 14 0.21
31 40 0.60
32 13 0.19
ACGTcount: A:0.07, C:0.15, G:0.00, T:0.79
Consensus pattern (31 bp):
TTTTTTCTTTTTTCATTTTTCATTTTTTTCA
Found at i:232721 original size:31 final size:31
Alignment explanation
Indices: 232646--232723 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
232636 TCTTCTTTTT
232646 TCTTTTTTCA-TTTTTCATTTTTTTCATTTTT
1 TCTTTTTT-ATTTTTTCATTTTTTTCATTTTT
* *
232677 TCTATTTCATTTTTTCATTTTTTTCATTTTT
1 TCTTTTTTATTTTTTCATTTTTTTCATTTTT
* *
232708 TTTTTTTTTTTTTTTC
1 TCTTTTTTATTTTTTC
232724 TTTCATCTTC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
30 1 0.03
31 39 0.98
ACGTcount: A:0.09, C:0.12, G:0.00, T:0.79
Consensus pattern (31 bp):
TCTTTTTTATTTTTTCATTTTTTTCATTTTT
Found at i:234770 original size:18 final size:18
Alignment explanation
Indices: 234744--234782 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
234734 CCTTCTTTGG
*
234744 CACTGGGACAATATTCGC
1 CACTAGGACAATATTCGC
234762 CACTAGGACAATATTCGC
1 CACTAGGACAATATTCGC
234780 CAC
1 CAC
234783 CCACTCAGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.31, C:0.31, G:0.18, T:0.21
Consensus pattern (18 bp):
CACTAGGACAATATTCGC
Found at i:245460 original size:394 final size:395
Alignment explanation
Indices: 244702--245499 Score: 1395
Period size: 394 Copynumber: 2.0 Consensus size: 395
244692 AAAGATGCAG
* *
244702 TGATATCACATTATGAAGGAATACTCTTCTTTTTCTTTTAAAATTATACATATTTCTATTTTGGT
1 TGAT-TCACATTATGAAGGAACACTCTTCTTTTTCATTTAAAATTATACATATTTCTATTTTGGT
*
244767 CGCTTGTACTGGTCGATTCCCCCCTCCCCCATTTTCTACAGTTTCCCATTCAGAAATCTTTTCAT
65 CGCTTGTACTGGTCGATTCCCCCCTCCCCCACTTTCTACAGTTTCCCATTCAGAAATCTTTTCAT
244832 TTTAAAACCATATTAAGGTTATTACATTGTAAGGAGTAACCCTAATTGCATGAGTGAGACTGTTT
130 TTTAAAACCATATTAAGGTTATTACATTGTAAGGAGTAACCCTAATTGCATGAGTGAGACTGTTT
* * *
244897 ATAACATGAATTGAGTAAAGGTGTGTTTATTTTTCTATCTTTTTATTTTTTTCAGGTAGAGTCAG
195 ATAACATGAATTGAGTAAAGGTGTGTTTATTTTTCTATC-TTTCATATTTTTCAGGTAGAGTCAC
244962 GTATAAATTTGCATCATTTTGGAACAGGAACCACACAGTACGAGCATTACAGCGTGCAACAAAAA
259 GTATAAATTTGCATCATTTTGGAACAGGAACCACACAGTACGAGCATTACAGCGTGCAACAAAAA
* *
245027 ACCACCATGCAATGTTGGAAGTTGAGAATAAGGTTTTTTT-ATGTTCTCCCTGTGATCTGTTACT
324 ACCACCATGCAATGTTGGAAGCTGAGAAGAAGGTTTTTTTCATGTTCTCCCTGTGATCTGTTACT
245091 TCTTATT
389 TCTTATT
* *
245098 TGATTCACATTCTGAAGGAACACTCTTCTTTTTCATTTAAAATTATACGTATTTCTATTTTGGTC
1 TGATTCACATTATGAAGGAACACTCTTCTTTTTCATTTAAAATTATACATATTTCTATTTTGGTC
*
245163 GTTTGTACTGGTCGATTCCCCCCTCCCCC-CTTTCTACAGTTTCCCATTCAGAAATCTTTTCATT
66 GCTTGTACTGGTCGATTCCCCCCTCCCCCACTTTCTACAGTTTCCCATTCAGAAATCTTTTCATT
*
245227 TTAAAACCATATTAAGGTTATTATATTGTAAGGAGTAACCCTAATTGCATGAGTGAGACTGTTTA
131 TTAAAACCATATTAAGGTTATTACATTGTAAGGAGTAACCCTAATTGCATGAGTGAGACTGTTTA
245292 TAACATGAATTGAGTAAAGGTGTGTTTATTTTTCTATC-TTCATATTTTTCAGGTAGAGTCACGT
196 TAACATGAATTGAGTAAAGGTGTGTTTATTTTTCTATCTTTCATATTTTTCAGGTAGAGTCACGT
*
245356 ATAAATTTGCATCATTTTGGAACAGGAACCACACAGTACGAGCATTACAGCGTGCAACAAAAAAT
261 ATAAATTTGCATCATTTTGGAACAGGAACCACACAGTACGAGCATTACAGCGTGCAACAAAAAAC
* *
245421 CACCATGCAATGTTGGAAGCTGAGAAGAAGGTTTTTTTTTGCATGTTCTCCTTGTGATTTGTTAC
326 CACCATGCAATGTTGGAAGCTGAGAAGAAGG--TTTTTTT-CATGTTCTCCCTGTGATCTGTTAC
245486 TTCTTATT
388 TTCTTATT
245494 TGATTC
1 TGATTC
245500 TTTCTTTTGA
Statistics
Matches: 383, Mismatches: 15, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
392 116 0.30
394 143 0.37
395 85 0.22
396 39 0.10
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.39
Consensus pattern (395 bp):
TGATTCACATTATGAAGGAACACTCTTCTTTTTCATTTAAAATTATACATATTTCTATTTTGGTC
GCTTGTACTGGTCGATTCCCCCCTCCCCCACTTTCTACAGTTTCCCATTCAGAAATCTTTTCATT
TTAAAACCATATTAAGGTTATTACATTGTAAGGAGTAACCCTAATTGCATGAGTGAGACTGTTTA
TAACATGAATTGAGTAAAGGTGTGTTTATTTTTCTATCTTTCATATTTTTCAGGTAGAGTCACGT
ATAAATTTGCATCATTTTGGAACAGGAACCACACAGTACGAGCATTACAGCGTGCAACAAAAAAC
CACCATGCAATGTTGGAAGCTGAGAAGAAGGTTTTTTTCATGTTCTCCCTGTGATCTGTTACTTC
TTATT
Found at i:247917 original size:100 final size:100
Alignment explanation
Indices: 247744--247923 Score: 351
Period size: 100 Copynumber: 1.8 Consensus size: 100
247734 GATTATGGTA
247744 CCAAACTACCAATGGCATCAGCATTCTGCTAAATCCAACTCGCTACTTTCACATAGTTCAATATG
1 CCAAACTACCAATGGCATCAGCATTCTGCTAAATCCAACTCGCTACTTTCACATAGTTCAATATG
247809 AGACTTCCAAGTTGGCCATACATATGGAGATTATG
66 AGACTTCCAAGTTGGCCATACATATGGAGATTATG
*
247844 CCAAACTACCAATGGCATCAGCATTCTGCTAAATCCAACTCGCTACTTTCACATAGTTCAATCTG
1 CCAAACTACCAATGGCATCAGCATTCTGCTAAATCCAACTCGCTACTTTCACATAGTTCAATATG
247909 AGACTTCCAAGTTGG
66 AGACTTCCAAGTTGG
247924 ACTCTTTAAG
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
100 79 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (100 bp):
CCAAACTACCAATGGCATCAGCATTCTGCTAAATCCAACTCGCTACTTTCACATAGTTCAATATG
AGACTTCCAAGTTGGCCATACATATGGAGATTATG
Found at i:251096 original size:18 final size:19
Alignment explanation
Indices: 251052--251097 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 19
251042 GATTATAGAT
251052 ATATTATT-ATTATTAATA
1 ATATTATTAATTATTAATA
*
251070 TTATT-TTAATTATTAA-A
1 ATATTATTAATTATTAATA
251087 ATATTATTAAT
1 ATATTATTAAT
251098 ATTGTACAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 7 0.29
18 17 0.71
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
ATATTATTAATTATTAATA
Found at i:253999 original size:188 final size:186
Alignment explanation
Indices: 253643--254018 Score: 718
Period size: 188 Copynumber: 2.0 Consensus size: 186
253633 ACATGTTCTG
253643 ATTACCCTAATATCCTCTTGATTACTTCAAATCTGCCTTAACGCTTAGACAAGGCTTAACAATCC
1 ATTACCCTAATATCCTCTTGATTACTTCAAATCTGCCTTAACGCTTAGACAAGGCTTAACAATCC
253708 AGGTGAGTATGTTTCCTTTGTACTTGCTTTTATATCTTCTGTTATGAGTTTATGTATAAGATGGT
66 AGGTGAGTATGTTTCCTTTGTACTTGCTTTTATATCTTCTGTTATGAGTTTATGTATAAGATGGT
253773 TGAAAAGTTGGAATGATGTAATATCTATGGGTTTTCACTATCATATTATTATTATT
131 TGAAAAGTTGGAATGATGTAATATCTATGGGTTTTCACTATCATATTATTATTATT
253829 ATTACCCTAATAATCCTCTTGATTACTTCAAATCTGCCTTAACGCTTAGACAAGGCTTAACAAAT
1 ATTACCCTAAT-ATCCTCTTGATTACTTCAAATCTGCCTTAACGCTTAGACAAGGCTTAAC-AAT
253894 CCAGGTGAGTATGTTTCCTTTGTACTTGCTTTTATATCTTCTGTTATTGAGTTTATGTATAAGAT
64 CCAGGTGAGTATGTTTCCTTTGTACTTGCTTTTATATCTTCTGTTA-TGAGTTTATGTATAAGAT
253959 GGTTGAAAAGTTGGAATGATGTAATATCTATGGG-TTTCACTATCATATTATTATTATT
128 GGTTGAAAAGTTGGAATGATGTAATATCTATGGGTTTTCACTATCATATTATTATTATT
254017 AT
1 AT
254019 ATACAACAAT
Statistics
Matches: 187, Mismatches: 0, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
186 11 0.06
187 49 0.26
188 75 0.40
189 52 0.28
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (186 bp):
ATTACCCTAATATCCTCTTGATTACTTCAAATCTGCCTTAACGCTTAGACAAGGCTTAACAATCC
AGGTGAGTATGTTTCCTTTGTACTTGCTTTTATATCTTCTGTTATGAGTTTATGTATAAGATGGT
TGAAAAGTTGGAATGATGTAATATCTATGGGTTTTCACTATCATATTATTATTATT
Found at i:258039 original size:21 final size:21
Alignment explanation
Indices: 258015--258055 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
258005 AAATGTTAAA
*
258015 AAACATTAATGTTTTAGGTAG
1 AAACAATAATGTTTTAGGTAG
258036 AAACAATAATGTTTTAGGTA
1 AAACAATAATGTTTTAGGTA
258056 ATTGTTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.41, C:0.05, G:0.17, T:0.37
Consensus pattern (21 bp):
AAACAATAATGTTTTAGGTAG
Found at i:258434 original size:39 final size:39
Alignment explanation
Indices: 258362--258437 Score: 109
Period size: 39 Copynumber: 1.9 Consensus size: 39
258352 GCGTTTATTT
**
258362 ATTAAATGAACGAACATGAACAAGATTTACGTTCGTTTA
1 ATTAAATGAACGAACATGAACAAGAGCTACGTTCGTTTA
*
258401 ATTAAATGAACGAACATGAACAAAGGGCT-CGTTCGTT
1 ATTAAATGAACGAACATGAAC-AAGAGCTACGTTCGTT
258438 CATTTACGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
39 29 0.88
40 4 0.12
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.28
Consensus pattern (39 bp):
ATTAAATGAACGAACATGAACAAGAGCTACGTTCGTTTA
Found at i:258489 original size:14 final size:14
Alignment explanation
Indices: 258467--258509 Score: 77
Period size: 14 Copynumber: 3.1 Consensus size: 14
258457 TCGATTATAT
*
258467 GTTCGTTTATGTTC
1 GTTCATTTATGTTC
258481 GTTCATTTATGTTC
1 GTTCATTTATGTTC
258495 GTTCATTTATGTTC
1 GTTCATTTATGTTC
258509 G
1 G
258510 AACAGAGGGC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.12, C:0.14, G:0.19, T:0.56
Consensus pattern (14 bp):
GTTCATTTATGTTC
Found at i:258803 original size:14 final size:13
Alignment explanation
Indices: 258762--258820 Score: 54
Period size: 13 Copynumber: 4.7 Consensus size: 13
258752 TTTTTTTTTT
*
258762 GTTTGTGTTGTTC
1 GTTTATGTTGTTC
258775 GTTTAT-TGTGTTC
1 GTTTATGT-TGTTC
258788 GTTTATGTTCGTTC
1 GTTTATGTT-GTTC
*
258802 G-TT-CG-TGTTC
1 GTTTATGTTGTTC
258812 GTTTATGTT
1 GTTTATGTT
258821 CGTTTATTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 12
0.71 0.06 0.23
Matches are distributed among these distances:
10 5 0.14
11 3 0.08
12 3 0.08
13 20 0.54
14 6 0.16
ACGTcount: A:0.05, C:0.10, G:0.25, T:0.59
Consensus pattern (13 bp):
GTTTATGTTGTTC
Found at i:258915 original size:16 final size:16
Alignment explanation
Indices: 258894--258926 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
258884 AAAAAAATTT
258894 TGTTCGTTTATATTCG
1 TGTTCGTTTATATTCG
*
258910 TGTTCGTTTATGTTCG
1 TGTTCGTTTATATTCG
258926 T
1 T
258927 TTATTTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.09, C:0.12, G:0.21, T:0.58
Consensus pattern (16 bp):
TGTTCGTTTATATTCG
Found at i:261060 original size:21 final size:19
Alignment explanation
Indices: 261036--261087 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 19
261026 AATAATAATG
261036 AAAAATAGATTAATATATAAA
1 AAAAATAGATT--TATATAAA
*
261057 AAAATATTATATTTATATAAA
1 AAAA-A-TAGATTTATATAAA
*
261078 ACAAATAGAT
1 AAAAATAGAT
261088 AAATGTACTT
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
19 4 0.15
20 1 0.04
21 15 0.58
22 1 0.04
23 5 0.19
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.33
Consensus pattern (19 bp):
AAAAATAGATTTATATAAA
Found at i:262621 original size:3 final size:3
Alignment explanation
Indices: 262613--262702 Score: 63
Period size: 3 Copynumber: 28.7 Consensus size: 3
262603 TTTTATTTTA
* * * *
262613 AAT AAT AAT ATTT AAT AAT ATT ATT ATT AAT AAT AAT ATAT ATAT ATAT
1 AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT A-AT A-AT A-AT
* ** * *
262662 AAT ATT AAT AAT AAT AAT AAT TTT ACT AAT AAA AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
262703 AACGAAATGA
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
3 59 0.82
4 13 0.18
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (3 bp):
AAT
Found at i:262648 original size:18 final size:17
Alignment explanation
Indices: 262625--262701 Score: 70
Period size: 18 Copynumber: 4.5 Consensus size: 17
262615 TAATAATATT
*
262625 TAATAATATTATTATTAA
1 TAATAATATTA-TAATAA
262643 TAATAATA-TAT-AT-A
1 TAATAATATTATAATAA
262657 TATATAATATTAATAATAA
1 TA-ATAATATT-ATAATAA
*
262676 TAATAATTTTACTAATAA
1 TAATAATATTA-TAATAA
*
262694 AAATAATA
1 TAATAATA
262702 AAACGAAATG
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
14 3 0.06
15 7 0.14
16 2 0.04
17 5 0.10
18 29 0.59
19 3 0.06
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (17 bp):
TAATAATATTATAATAA
Found at i:262692 original size:27 final size:27
Alignment explanation
Indices: 262613--262677 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
262603 TTTTATTTTA
* *
262613 AATAATAATATTTA-ATAATATTATTATT
1 AATAATAATATATATAT-ATA-TAATATT
262641 AATAATAATATATATATATATAATATT
1 AATAATAATATATATATATATAATATT
262668 AATAATAATA
1 AATAATAATA
262678 ATAATTTTAC
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
27 16 0.47
28 16 0.47
29 2 0.06
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (27 bp):
AATAATAATATATATATATATAATATT
Found at i:262982 original size:76 final size:76
Alignment explanation
Indices: 262856--263314 Score: 855
Period size: 76 Copynumber: 6.0 Consensus size: 76
262846 GGTCTTATGA
*
262856 ATGACCCTGAGGGTTTAAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGC
1 ATGACCCTGAGGGTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGC
262921 AGGACTTACAG
66 AGGACTTACAG
* * *
262932 ATGACCCTGAAGGTTTGAAAACATCAAAAAGCTTCCGAAGGCTTTTTGGAAACATCATGCAATGC
1 ATGACCCTGAGGGTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGC
262997 AGGACTTACAG
66 AGGACTTACAG
*
263008 ATGACCCTGAGGGTTTGAAAACATCAAAAAGCTACCGAAGGCTTTTTGGAAACATCATGCACTGC
1 ATGACCCTGAGGGTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGC
263073 AGGACTTACAG
66 AGGACTTACAG
263084 ATGACCCTGAGGGTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGC
1 ATGACCCTGAGGGTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGC
263149 AGGACTTACAG
66 AGGACTTACAG
*
263160 ATGACCCTGAGGGTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAGACATCATGCACTGC
1 ATGACCCTGAGGGTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGC
263225 AGGACTTACAG
66 AGGACTTACAG
*
263236 ATGACCCTGAGGGTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAGACATCATGCACTGC
1 ATGACCCTGAGGGTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGC
263301 AGGACTTACAG
66 AGGACTTACAG
263312 ATG
1 ATG
263315 TGGGAAATAG
Statistics
Matches: 374, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
76 374 1.00
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23
Consensus pattern (76 bp):
ATGACCCTGAGGGTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGC
AGGACTTACAG
Found at i:264184 original size:22 final size:22
Alignment explanation
Indices: 264159--264238 Score: 88
Period size: 22 Copynumber: 3.6 Consensus size: 22
264149 CATAAAGTTT
*
264159 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTAAAAAGAGAATCTA
* * *
264181 TCATCTTTAAAAAGAAAATTTG
1 TCATCTTTAAAAAGAGAATCTA
* * **
264203 TCATCTCTGAAGTGAGAATCTA
1 TCATCTTTAAAAAGAGAATCTA
264225 TCATCTTTAAAAAG
1 TCATCTTTAAAAAG
264239 TGTAGATGTA
Statistics
Matches: 43, Mismatches: 15, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
22 43 1.00
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.34
Consensus pattern (22 bp):
TCATCTTTAAAAAGAGAATCTA
Found at i:269092 original size:15 final size:16
Alignment explanation
Indices: 269064--269096 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
269054 TCAATTTCTC
269064 CCTTTTTTCCTTTCTTT
1 CCTTTTTT-CTTTCTTT
269081 CCTTTTTT-TTTCTTT
1 CCTTTTTTCTTTCTTT
269096 C
1 C
269097 TTTGATGTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (16 bp):
CCTTTTTTCTTTCTTT
Found at i:271887 original size:14 final size:14
Alignment explanation
Indices: 271870--271908 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
271860 TAAAAGTATG
271870 AATGCAAAATGAAA
1 AATGCAAAATGAAA
*
271884 AATGCAAAGATGCAA
1 AATGCAAA-ATGAAA
271899 AATG-AAAATG
1 AATGCAAAATG
271909 CATATATGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 3 0.13
14 11 0.48
15 9 0.39
ACGTcount: A:0.59, C:0.08, G:0.18, T:0.15
Consensus pattern (14 bp):
AATGCAAAATGAAA
Found at i:273935 original size:7 final size:7
Alignment explanation
Indices: 273911--273962 Score: 50
Period size: 7 Copynumber: 6.9 Consensus size: 7
273901 TCTTGAATAA
273911 AATAAAT
1 AATAAAT
273918 AAATAAAAT
1 -AAT-AAAT
273927 AATAAAT
1 AATAAAT
*
273934 AATAAGT
1 AATAAAT
273941 AATAAAAAT
1 AAT--AAAT
*
273950 AATAAGT
1 AATAAAT
273957 AATAAA
1 AATAAA
273963 AAGTTGAAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
7 21 0.57
8 6 0.16
9 10 0.27
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.25
Consensus pattern (7 bp):
AATAAAT
Found at i:273949 original size:16 final size:16
Alignment explanation
Indices: 273924--273964 Score: 73
Period size: 16 Copynumber: 2.5 Consensus size: 16
273914 AAATAAATAA
273924 AATAATAAATAATAAGT
1 AATAA-AAATAATAAGT
273941 AATAAAAATAATAAGT
1 AATAAAAATAATAAGT
273957 AATAAAAA
1 AATAAAAA
273965 GTTGAAAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 19 0.79
17 5 0.21
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (16 bp):
AATAAAAATAATAAGT
Found at i:274678 original size:145 final size:146
Alignment explanation
Indices: 274481--274760 Score: 397
Period size: 145 Copynumber: 1.9 Consensus size: 146
274471 ATTTATACAT
* * *
274481 TAAGATATTTATTTATTTAGAAATATCATAAAATGACTTCTAGGTGCCTTAAGACAGCTCTTTTC
1 TAAGATATTTACTTATTTAGAAATATCAGAAAAGGACTTCTAGGTGCCTTAAGACAGCTCTTTTC
* *
274546 TTCGATATTAAAAAAATGAA-TAAATAT-AAAAACATTTT-TTCTAAA-AATAATAAAAAATATA
66 TTCGATATT-AAAAAAT-AATTAAATATCAAAAACATTTTCTT-AAAATAATAATAAAAAATAGA
*
274607 TTGATATAATTTATAAAAG
128 TTAATATAATTTATAAAAG
** *
274626 TAAGATATTTACTTATTTAGAAATATCAGAAAAGGGTTTCTAGGTGCTTTAAGACAGCTCTTTTC
1 TAAGATATTTACTTATTTAGAAATATCAGAAAAGGACTTCTAGGTGCCTTAAGACAGCTCTTTTC
* * *
274691 TTTGATATTAAAAAATAATTAAATATCCAAAACATTTTCTTAAAATAATAATGAAAAATAGATTA
66 TTCGATATTAAAAAATAATTAAATATCAAAAACATTTTCTTAAAATAATAATAAAAAATAGATTA
274756 ATATA
131 ATATA
274761 TAAAAATATG
Statistics
Matches: 119, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
143 2 0.02
144 14 0.12
145 80 0.67
146 23 0.19
ACGTcount: A:0.45, C:0.09, G:0.09, T:0.37
Consensus pattern (146 bp):
TAAGATATTTACTTATTTAGAAATATCAGAAAAGGACTTCTAGGTGCCTTAAGACAGCTCTTTTC
TTCGATATTAAAAAATAATTAAATATCAAAAACATTTTCTTAAAATAATAATAAAAAATAGATTA
ATATAATTTATAAAAG
Done.