genome.fa.s8707.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008707.1 Hibiscus syriacus cultivar Beakdansim tig00111749_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  138913

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17345--17372	11	2.5	11	100	0	56	53	0	14	32	1.41
25828--25876	13	3.7	13	81	5	53	22	4	12	61	1.48
27952--27984	2	16.5	2	100	0	66	51	0	0	48	1.00
34949--34993	21	2.1	21	87	0	63	31	28	24	15	1.96
35465--35503	2	19.5	2	100	0	78	51	0	0	48	1.00
36276--36372	32	3.1	32	77	14	119	27	17	19	35	1.94
36275--36375	31	3.2	31	79	10	116	27	18	19	33	1.96
36363--36456	30	3.1	30	90	3	136	20	21	27	30	1.98
39875--39918	2	22.0	2	100	0	88	50	0	0	50	1.00
40689--40785	32	3.1	32	78	14	128	28	17	18	35	1.94
40688--40788	31	3.2	31	81	10	125	28	18	18	33	1.95
40776--40869	30	3.1	30	89	3	127	20	20	27	31	1.97
45249--45319	23	3.1	23	78	11	74	26	4	1	67	1.17
45695--45720	11	2.4	11	100	0	52	23	0	0	76	0.78
45676--45718	17	2.4	19	84	7	54	20	2	2	74	1.04
46806--46840	14	2.4	14	95	4	61	22	5	0	71	1.07
48108--48162	14	4.0	13	82	17	67	78	3	16	1	0.98
48108--48163	28	2.0	28	86	13	80	76	3	16	3	1.06
49905--50131	36	6.4	36	78	10	218	27	19	12	40	1.88
49905--50000	37	2.6	37	91	3	149	27	20	11	40	1.87
49818--50097	102	2.8	101	83	1	317	28	18	12	40	1.87
50898--51104	110	1.9	110	88	0	315	35	21	19	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52491--52562	4	17.2	4	79	11	65	27	4	0	68	1.08
52491--52582	28	3.3	28	77	18	95	29	4	0	66	1.11
52492--52608	25	4.7	25	77	13	89	33	4	0	62	1.15
52567--52631	2	33.0	2	89	9	98	46	3	0	50	1.17
58786--58843	27	2.1	27	96	0	107	46	6	15	31	1.72
59583--59608	2	13.0	2	100	0	52	50	0	0	50	1.00
64553--64600	18	2.6	18	83	9	53	29	12	0	58	1.35
67880--67913	15	2.3	15	94	0	59	55	0	0	44	0.99
71011--71045	18	1.9	18	94	0	61	22	34	22	20	1.97
71909--71960	20	2.6	20	96	0	95	30	30	11	26	1.92
71929--72070	54	2.6	55	86	1	187	31	21	16	30	1.95
75392--75437	22	2.2	20	78	14	56	47	2	4	45	1.34
75398--75442	22	2.0	22	95	0	81	46	2	4	46	1.35
75402--75450	22	2.2	22	85	0	71	53	2	6	38	1.38
75603--75661	21	2.7	22	76	5	75	22	25	20	32	1.98
75646--75779	20	6.7	20	79	10	130	30	21	20	26	1.98
75646--75738	40	2.3	40	94	0	168	34	19	21	24	1.96
78911--78945	18	1.9	18	94	0	61	54	25	2	17	1.57
79123--79362	20	12.7	20	73	11	157	37	21	17	22	1.94
79128--79282	52	2.9	52	88	3	202	40	21	18	20	1.92
79497--79576	30	2.4	34	80	20	114	55	15	3	26	1.57
79512--79577	30	2.2	30	100	0	132	54	13	3	28	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80998--81042	21	2.1	21	87	0	63	26	11	40	22	1.87
81638--81704	20	3.3	20	85	4	82	17	17	26	37	1.93
81848--81897	18	2.8	18	100	0	100	42	6	20	32	1.76
83629--83696	20	3.4	20	85	0	82	42	23	16	17	1.88
84095--84151	22	2.6	22	80	0	78	17	17	42	22	1.89
84316--84530	20	10.6	20	74	7	139	27	19	21	30	1.98
84360--84493	40	3.3	40	95	0	232	26	20	18	34	1.96
84316--84530	60	3.5	60	75	7	166	27	19	21	30	1.98
88155--88209	21	2.7	20	77	2	65	36	20	16	27	1.93
90692--90738	16	2.9	17	84	9	71	14	23	21	40	1.90
92024--92104	31	2.6	31	92	0	126	17	12	28	41	1.85
93404--93442	3	12.7	3	84	15	53	30	0	2	66	1.05
93404--93441	15	2.7	14	88	11	60	28	0	2	68	1.03
94522--94552	2	15.5	2	100	0	62	48	0	0	51	1.00
96279--96303	9	2.8	9	100	0	50	0	0	20	80	0.72
98961--99028	30	2.3	30	84	0	82	42	19	5	32	1.75
106138--106218	8	9.6	8	75	15	65	77	0	16	6	0.95
106173--106226	22	2.4	21	84	9	72	83	0	9	7	0.82
107163--107273	39	2.8	40	79	9	111	25	34	18	22	1.96
107201--107326	47	2.8	45	82	12	136	26	32	17	23	1.96
107231--107326	47	2.1	45	90	7	149	28	33	15	22	1.95
107345--107461	43	2.8	40	71	12	103	23	32	18	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107617--107655	3	12.7	3	84	15	53	30	0	2	66	1.05
107617--107654	15	2.7	14	88	11	60	28	0	2	68	1.03
112106--112171	20	3.2	20	72	4	60	37	19	19	22	1.94
112338--112395	22	2.6	22	88	0	89	17	48	17	17	1.82
112749--112791	20	2.2	19	87	4	59	11	20	23	44	1.84
113731--113827	42	2.3	42	87	0	131	30	35	16	17	1.92
114010--114126	21	5.5	22	77	8	68	21	12	32	33	1.91
114418--114510	21	4.6	21	85	8	129	22	36	18	22	1.95
114417--114513	39	2.4	41	84	5	135	21	39	17	21	1.93
115903--115937	16	2.3	15	90	5	52	20	0	14	65	1.26
119478--119514	16	2.4	16	86	8	51	64	0	5	29	1.15
119671--119821	20	7.5	20	70	7	81	31	12	24	31	1.92
119670--119819	40	3.7	41	75	8	137	31	12	24	31	1.92
123353--123378	2	13.0	2	100	0	52	50	0	0	50	1.00
129099--129135	5	7.0	5	93	6	56	56	18	5	18	1.60
131906--132011	55	1.9	55	94	0	185	47	5	27	19	1.72
132655--132680	12	2.2	12	100	0	52	61	0	0	38	0.96
137361--137458	34	2.9	34	98	0	187	52	11	10	26	1.69
137913--137954	2	22.0	2	90	9	70	52	0	0	47	1.00

Tables:   1

The End!