Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008708.1 Hibiscus syriacus cultivar Beakdansim tig00111754_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1112311
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 2 of 4
Found at i:266959 original size:35 final size:35
Alignment explanation
Indices: 266912--266997 Score: 100
Period size: 35 Copynumber: 2.5 Consensus size: 35
266902 AAAACAGTCA
* * *
266912 TCAATTTCATTCTAAACCCCAATTTCCAAAGTAAT
1 TCAATTTAATTCTAAACCCCAAATTCCAAAATAAT
* * * *
266947 TCAATTTTATTCTAAACCCTAAATTCTAAAATACT
1 TCAATTTAATTCTAAACCCCAAATTCCAAAATAAT
*
266982 TCAATTAAATTCTAAA
1 TCAATTTAATTCTAAA
266998 ATACTTCAAT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 43 1.00
ACGTcount: A:0.41, C:0.21, G:0.01, T:0.37
Consensus pattern (35 bp):
TCAATTTAATTCTAAACCCCAAATTCCAAAATAAT
Found at i:266991 original size:21 final size:21
Alignment explanation
Indices: 266966--267008 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
266956 TTCTAAACCC
266966 TAAATTCTAAAATACTTCAAT
1 TAAATTCTAAAATACTTCAAT
266987 TAAATTCTAAAATACTTCAAT
1 TAAATTCTAAAATACTTCAAT
267008 T
1 T
267009 TAAGGTAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.47, C:0.14, G:0.00, T:0.40
Consensus pattern (21 bp):
TAAATTCTAAAATACTTCAAT
Found at i:267163 original size:16 final size:18
Alignment explanation
Indices: 267131--267164 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
267121 TATTAATGTA
267131 TGAATCATTTATATTTTT
1 TGAATCATTTATATTTTT
267149 TGAAT-ATTT-TATTTTT
1 TGAATCATTTATATTTTT
267165 AATAAGAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.65
Consensus pattern (18 bp):
TGAATCATTTATATTTTT
Found at i:267836 original size:130 final size:130
Alignment explanation
Indices: 267633--267880 Score: 433
Period size: 130 Copynumber: 1.9 Consensus size: 130
267623 AATTTTCTTC
* * *
267633 TAATTAGGAGGTGACATGTGTCACCAATGACACATATCATGATCATGTGTTAACACATGTCAGAT
1 TAATTAGGAGGTAACACGTGTCACCAATGACACATATCATGATCATGTGCTAACACATGTCAGAT
*
267698 CCTGATTAAATGATTAATTTATTAAATTTTATTTAATTTAGGACCAAATTGATAGCATATATAAA
66 CCTAATTAAATGATTAATTTATTAAATTTTATTTAATTTAGGACCAAATTGATAGCATATATAAA
* * *
267763 TAATTAGGTGGTAACACGTGTCACCAATGACACGTGTCATGATCATGTGCTAACACATGTCAGAT
1 TAATTAGGAGGTAACACGTGTCACCAATGACACATATCATGATCATGTGCTAACACATGTCAGAT
267828 CCTAATTAAATGATTAATTTATTAAATTTTATTTAATTTAGGACCAAATTGAT
66 CCTAATTAAATGATTAATTTATTAAATTTTATTTAATTTAGGACCAAATTGAT
267881 TATATAAATA
Statistics
Matches: 111, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
130 111 1.00
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.35
Consensus pattern (130 bp):
TAATTAGGAGGTAACACGTGTCACCAATGACACATATCATGATCATGTGCTAACACATGTCAGAT
CCTAATTAAATGATTAATTTATTAAATTTTATTTAATTTAGGACCAAATTGATAGCATATATAAA
Found at i:269559 original size:36 final size:38
Alignment explanation
Indices: 269493--269565 Score: 98
Period size: 37 Copynumber: 2.0 Consensus size: 38
269483 CAAAGTCAAT
* *
269493 TTTTAGACTAAATATTTCATTCAAATATT-AATTAAAA
1 TTTTAGACTAAATATTACAATCAAATATTAAATTAAAA
269530 TTTTAGA-TAAATATGTACAATCAAA-ATTAAATTAAA
1 TTTTAGACTAAATAT-TACAATCAAATATTAAATTAAA
269566 GAAAAATATA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 10 0.31
37 22 0.69
ACGTcount: A:0.49, C:0.07, G:0.04, T:0.40
Consensus pattern (38 bp):
TTTTAGACTAAATATTACAATCAAATATTAAATTAAAA
Found at i:271978 original size:3 final size:3
Alignment explanation
Indices: 271970--271995 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
271960 TTCATGCAAA
271970 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
271996 GGTTAATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:278995 original size:74 final size:74
Alignment explanation
Indices: 278818--279037 Score: 223
Period size: 74 Copynumber: 3.0 Consensus size: 74
278808 CTTTTTGGCT
* * * * ***
278818 CCTATTTTTT-TGGCTTCTTAATGACAACAACTAATAGATATACTCGATTTTAG-GCTCTTAAAA
1 CCTATTTTTTAAGACTTCTTAATGACAACAACTAATAGATATACTCGATTTCAGAGCCCTTATTT
* * * *
278881 ATAGGGGCC
66 TTTGAGACC
* * * *
278890 TCTATTTTTTAGGATCTT-TTAATGGCAACAACTGATAGATATACTCGATTTCAGAGCCCTTATT
1 CCTATTTTTTAAGA-CTTCTTAATGACAACAACTAATAGATATACTCGATTTCAGAGCCCTTATT
278954 TTTTGAGACC
65 TTTTGAGACC
* * * *
278964 CCTATTTTTTAAGACTTCTTAATAACAACAACTAATAGATATACTTGATTTC-GAAACCCCTATT
1 CCTATTTTTTAAGACTTCTTAATGACAACAACTAATAGATATACTCGATTTCAG-AGCCCTTATT
279028 TTTTGAGACC
65 TTTTGAGACC
279038 ATGCGCCGTC
Statistics
Matches: 121, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
72 9 0.07
73 38 0.31
74 74 0.61
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (74 bp):
CCTATTTTTTAAGACTTCTTAATGACAACAACTAATAGATATACTCGATTTCAGAGCCCTTATTT
TTTGAGACC
Found at i:282682 original size:20 final size:22
Alignment explanation
Indices: 282655--282713 Score: 74
Period size: 20 Copynumber: 2.9 Consensus size: 22
282645 TTTTAATATA
282655 ATTT-TTTATTT-ATATTTAT-
1 ATTTATTTATTTGATATTTATC
282674 ATTTATTTATTTGATA-TTATC
1 ATTTATTTATTTGATATTTATC
*
282695 A-TAATTTATTTGATATTTA
1 ATTTATTTATTTGATATTTA
282714 AATATTTTCT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
19 4 0.11
20 24 0.69
21 7 0.20
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (22 bp):
ATTTATTTATTTGATATTTATC
Found at i:286467 original size:59 final size:60
Alignment explanation
Indices: 286401--286542 Score: 171
Period size: 59 Copynumber: 2.4 Consensus size: 60
286391 TAGTTCCTCA
* * * *
286401 ACTATTAAAAATTATAAAATATTTTATCAATTATAAAAT-TATATTTTGTTGACT-CATCG
1 ACTATTAAAAATTATAAAATAGTTTATCAACTATAAAATGT-TAATTTCTTGACTCCATCG
* * * * * *
286460 ACTATTAAAAGTTACAAAATAGTTTATCAACTATAAGATGTTAATTTCTTGAGTCCCTTG
1 ACTATTAAAAATTATAAAATAGTTTATCAACTATAAAATGTTAATTTCTTGACTCCATCG
286520 ACTATTAAAAATTATAAAATAGT
1 ACTATTAAAAATTATAAAATAGT
286543 CATCCGACTA
Statistics
Matches: 69, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
59 44 0.64
60 25 0.36
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (60 bp):
ACTATTAAAAATTATAAAATAGTTTATCAACTATAAAATGTTAATTTCTTGACTCCATCG
Found at i:288633 original size:2 final size:2
Alignment explanation
Indices: 288626--288651 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
288616 ATTGAAGTTC
288626 AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
288652 TGAATTCATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:302483 original size:12 final size:11
Alignment explanation
Indices: 302460--302490 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 11
302450 TGCGTGAGAT
302460 AAGAAAAAAAA
1 AAGAAAAAAAA
302471 AAGAAATAAAAA
1 AAGAAA-AAAAA
302483 AAGAAAAA
1 AAGAAAAA
302491 GAAATGATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.87, C:0.00, G:0.10, T:0.03
Consensus pattern (11 bp):
AAGAAAAAAAA
Found at i:302484 original size:18 final size:18
Alignment explanation
Indices: 302458--302495 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
302448 GGTGCGTGAG
*
302458 ATAAGAAAAAAAAAAGAA
1 ATAAAAAAAAAAAAAGAA
*
302476 ATAAAAAAAGAAAAAGAA
1 ATAAAAAAAAAAAAAGAA
302494 AT
1 AT
302496 GATTAGATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.82, C:0.00, G:0.11, T:0.08
Consensus pattern (18 bp):
ATAAAAAAAAAAAAAGAA
Found at i:302935 original size:20 final size:20
Alignment explanation
Indices: 302910--302947 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
302900 CGTCATATTT
302910 AAAAATTAAATAAAAATACC
1 AAAAATTAAATAAAAATACC
*
302930 AAAAATTTAATAAAAATA
1 AAAAATTAAATAAAAATA
302948 ATTTTTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (20 bp):
AAAAATTAAATAAAAATACC
Found at i:303420 original size:16 final size:16
Alignment explanation
Indices: 303399--303429 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
303389 TTCTAAATTT
303399 TTTTTGAGTTCAAGTC
1 TTTTTGAGTTCAAGTC
*
303415 TTTTTGAGTTTAAGT
1 TTTTTGAGTTCAAGT
303430 TTCAATATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.06, G:0.19, T:0.55
Consensus pattern (16 bp):
TTTTTGAGTTCAAGTC
Found at i:307430 original size:19 final size:19
Alignment explanation
Indices: 307406--307444 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
307396 TTGTAATTTC
307406 TAAACAATAAAATAA-AAAT
1 TAAAC-ATAAAATAATAAAT
*
307425 TAAACATAATATAATAAAT
1 TAAACATAAAATAATAAAT
307444 T
1 T
307445 CAAGTAGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (19 bp):
TAAACATAAAATAATAAAT
Found at i:311807 original size:23 final size:23
Alignment explanation
Indices: 311778--311831 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
311768 TTCGCGAATA
*
311778 TTCGTTTTGCGTT-TACCAACATG
1 TTCGTTTAGCGTTCT-CCAACATG
* *
311801 TTCGTTTAGCGTTCTCTAAGATG
1 TTCGTTTAGCGTTCTCCAACATG
311824 TTCGTTTA
1 TTCGTTTA
311832 TCATCTTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.17, C:0.19, G:0.19, T:0.46
Consensus pattern (23 bp):
TTCGTTTAGCGTTCTCCAACATG
Found at i:314296 original size:141 final size:140
Alignment explanation
Indices: 314040--314307 Score: 331
Period size: 141 Copynumber: 1.9 Consensus size: 140
314030 GTCACCCCCA
* * *
314040 AAGTGTCCCAGGCTCACAACATTGTTGTTGTCTCAGTGCAATATAGTAAGTATTCCAGAAGGATT
1 AAGTGTCCCAGGCTCACAACATTGTTGTTCTCTCAGTGCAATATAGAAAGTATTCCAGAAAGATT
* * * * * *
314105 TTTCAAGCATATGGATGCACTTAAGGTTCTTGATCTTTCCTTCAACCCTATCAAGAGTCTTCCAA
66 CTTCAAGCATATGAATGAACTCAAGATTCTTGATCTTTCCTGCAACCCTATC-AGAGTCTTCCAA
314170 TTTCCTTGTCG
130 TTTCCTTGTCG
* * * * *** *
314181 AAGTGTCTCGGGCTCACAACATTGTTGTTCTCTGATTGTTGTATAGAAAGTATTCCAGAAAGCTT
1 AAGTGTCCCAGGCTCACAACATTGTTGTTCTCTCAGTGCAATATAGAAAGTATTCCAGAAAGATT
* * *
314246 CTTCGATG-ATATGAATGAACTCAAGATTCTTGATCTTTCCTGGAATCCTATCAGAGTCTTCC
66 CTTC-AAGCATATGAATGAACTCAAGATTCTTGATCTTTCCTGCAACCCTATCAGAGTCTTCC
314308 GCATTCCTTA
Statistics
Matches: 106, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
140 10 0.09
141 94 0.89
142 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (140 bp):
AAGTGTCCCAGGCTCACAACATTGTTGTTCTCTCAGTGCAATATAGAAAGTATTCCAGAAAGATT
CTTCAAGCATATGAATGAACTCAAGATTCTTGATCTTTCCTGCAACCCTATCAGAGTCTTCCAAT
TTCCTTGTCG
Found at i:316447 original size:8 final size:10
Alignment explanation
Indices: 316415--316458 Score: 74
Period size: 10 Copynumber: 4.6 Consensus size: 10
316405 CCCTCTTAAA
316415 ATTTTTATAT
1 ATTTTTATAT
316425 ATTTTTATAT
1 ATTTTTATAT
316435 ATTTTTA-AT
1 ATTTTTATAT
316444 -TTTTTATAT
1 ATTTTTATAT
316453 ATTTTT
1 ATTTTT
316459 TATTGATAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
8 6 0.19
9 4 0.12
10 22 0.69
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (10 bp):
ATTTTTATAT
Found at i:316449 original size:18 final size:20
Alignment explanation
Indices: 316415--316458 Score: 74
Period size: 18 Copynumber: 2.3 Consensus size: 20
316405 CCCTCTTAAA
316415 ATTTTTATATATTTTTATAT
1 ATTTTTATATATTTTTATAT
316435 ATTTTTA-AT-TTTTTATAT
1 ATTTTTATATATTTTTATAT
316453 ATTTTT
1 ATTTTT
316459 TATTGATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 15 0.62
19 2 0.08
20 7 0.29
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (20 bp):
ATTTTTATATATTTTTATAT
Found at i:319103 original size:34 final size:35
Alignment explanation
Indices: 319030--319103 Score: 105
Period size: 35 Copynumber: 2.1 Consensus size: 35
319020 TTCATGTTCA
*
319030 AAATTTCAAAACACTTCAATTACATTCTAAACCCC
1 AAATTCCAAAACACTTCAATTACATTCTAAACCCC
* * *
319065 AAATTCCAAAATACTTTAATTACATT-TAAACCCT
1 AAATTCCAAAACACTTCAATTACATTCTAAACCCC
319099 AAATT
1 AAATT
319104 GAAGTATTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
34 12 0.34
35 23 0.66
ACGTcount: A:0.45, C:0.23, G:0.00, T:0.32
Consensus pattern (35 bp):
AAATTCCAAAACACTTCAATTACATTCTAAACCCC
Found at i:326374 original size:3 final size:3
Alignment explanation
Indices: 326366--326428 Score: 83
Period size: 3 Copynumber: 21.3 Consensus size: 3
326356 ATTTAATATT
* * * *
326366 TAA TAA TAA TAA TAA TGA TAA TAA T-A TAA TAA TAA TTA TTA TTA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
326413 TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA T
326429 TAATTAATAT
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
2 2 0.04
3 53 0.96
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.40
Consensus pattern (3 bp):
TAA
Found at i:328792 original size:18 final size:18
Alignment explanation
Indices: 328769--328825 Score: 105
Period size: 18 Copynumber: 3.2 Consensus size: 18
328759 AATGGTCAAC
328769 GGTCAACGGGTCGGGTCG
1 GGTCAACGGGTCGGGTCG
*
328787 GGTCAAAGGGTCGGGTCG
1 GGTCAACGGGTCGGGTCG
328805 GGTCAACGGGTCGGGTCG
1 GGTCAACGGGTCGGGTCG
328823 GGT
1 GGT
328826 TGTGACCGGT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.12, C:0.19, G:0.51, T:0.18
Consensus pattern (18 bp):
GGTCAACGGGTCGGGTCG
Found at i:330756 original size:17 final size:17
Alignment explanation
Indices: 330734--330768 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
330724 TAAACTAATG
330734 ATATTTATT-TATTTTTA
1 ATATTT-TTATATTTTTA
330751 ATATTTTTATATTTTTA
1 ATATTTTTATATTTTTA
330768 A
1 A
330769 ACAAAGTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 15 0.88
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATATTTTTATATTTTTA
Found at i:336734 original size:39 final size:39
Alignment explanation
Indices: 336680--336758 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
336670 TAGTAAGTTA
*
336680 ACGGCGTTAATATGACTAAAATAGAATTGTTTTAAAACC
1 ACGGCGTTAACATGACTAAAATAGAATTGTTTTAAAACC
*
336719 ACGGCGTTAACATGACTAAAATATAATTGTTTTAAAACC
1 ACGGCGTTAACATGACTAAAATAGAATTGTTTTAAAACC
336758 A
1 A
336759 GTGAAAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.30
Consensus pattern (39 bp):
ACGGCGTTAACATGACTAAAATAGAATTGTTTTAAAACC
Found at i:350220 original size:20 final size:20
Alignment explanation
Indices: 350195--350235 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
350185 TAGGGAGAGG
350195 ATTGAAAGGTTAAGACCTTT
1 ATTGAAAGGTTAAGACCTTT
350215 ATTGAAAGGTTAAGACCTTT
1 ATTGAAAGGTTAAGACCTTT
350235 A
1 A
350236 AATGAAATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.34
Consensus pattern (20 bp):
ATTGAAAGGTTAAGACCTTT
Found at i:350341 original size:23 final size:23
Alignment explanation
Indices: 350315--350364 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
350305 ACCTTTAGAG
*
350315 TGAAATGAAATAACTATTTTTCA
1 TGAAAAGAAATAACTATTTTTCA
** *
350338 TGAAAAGACTTAATTATTTTTCA
1 TGAAAAGAAATAACTATTTTTCA
350361 TGAA
1 TGAA
350365 TAGTCATGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.42, C:0.08, G:0.10, T:0.40
Consensus pattern (23 bp):
TGAAAAGAAATAACTATTTTTCA
Found at i:355001 original size:19 final size:19
Alignment explanation
Indices: 354977--355015 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
354967 TTGTAATTTC
354977 TAAACAATAAAATAA-AAAT
1 TAAAC-ATAAAATAATAAAT
*
354996 TAAACATAATATAATAAAT
1 TAAACATAAAATAATAAAT
355015 T
1 T
355016 CAAGTAGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (19 bp):
TAAACATAAAATAATAAAT
Found at i:359478 original size:23 final size:23
Alignment explanation
Indices: 359432--359485 Score: 74
Period size: 23 Copynumber: 2.3 Consensus size: 23
359422 CGCGAATATA
*
359432 TTCGTTTAGCGTTTACCAATATG
1 TTCGTTTAGCGTTTACCAACATG
*
359455 TTCGTTTAGCGTTCT-CTAACATG
1 TTCGTTTAGCGTT-TACCAACATG
359478 TTCGTTTA
1 TTCGTTTA
359486 TCATCTGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 27 0.96
24 1 0.04
ACGTcount: A:0.19, C:0.19, G:0.17, T:0.46
Consensus pattern (23 bp):
TTCGTTTAGCGTTTACCAACATG
Found at i:367413 original size:15 final size:16
Alignment explanation
Indices: 367393--367422 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
367383 AAAGTAAATG
367393 GAAATGGAAA-GAATT
1 GAAATGGAAATGAATT
367408 GAAATGGAAATGAAT
1 GAAATGGAAATGAAT
367423 GTTATCAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.53, C:0.00, G:0.27, T:0.20
Consensus pattern (16 bp):
GAAATGGAAATGAATT
Found at i:369990 original size:20 final size:20
Alignment explanation
Indices: 369965--370005 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
369955 TAGGGAGAGG
369965 ATTGAAAGGTTAAGACCTTT
1 ATTGAAAGGTTAAGACCTTT
369985 ATTGAAAGGTTAAGACCTTT
1 ATTGAAAGGTTAAGACCTTT
370005 A
1 A
370006 AATGAAATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.34
Consensus pattern (20 bp):
ATTGAAAGGTTAAGACCTTT
Found at i:370111 original size:23 final size:23
Alignment explanation
Indices: 370085--370134 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
370075 ACCTTTAGAG
*
370085 TGAAATGAAATAACTATTTTTCA
1 TGAAAAGAAATAACTATTTTTCA
** *
370108 TGAAAAGACTTAATTATTTTTCA
1 TGAAAAGAAATAACTATTTTTCA
370131 TGAA
1 TGAA
370135 TAGTCATGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.42, C:0.08, G:0.10, T:0.40
Consensus pattern (23 bp):
TGAAAAGAAATAACTATTTTTCA
Found at i:374776 original size:19 final size:19
Alignment explanation
Indices: 374752--374790 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
374742 TTGTAATTTC
374752 TAAACAATAAAATAA-AAAT
1 TAAAC-ATAAAATAATAAAT
*
374771 TAAACATAATATAATAAAT
1 TAAACATAAAATAATAAAT
374790 T
1 T
374791 CAAGTAGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (19 bp):
TAAACATAAAATAATAAAT
Found at i:377771 original size:310 final size:310
Alignment explanation
Indices: 377193--377815 Score: 1032
Period size: 310 Copynumber: 2.0 Consensus size: 310
377183 AAATGGATAG
* * * *
377193 CATGCGGGCAGAGTTTGACAATGGTCGTGCAATAATGAATAGGCTCATCAGCAATTGCTTGTTGG
1 CATGCAGGCAGAGTATGACAATGGTCGTGCAATAATGAATAGACTCATCAGCAATTGCTTGTTAG
377258 AAGTTTTTACTGAAGAAGAACATGCAAGAACTGTAAAGATGCATGATCTTCTAAGGGACATGGCA
66 AAGTTTTTACTGAAGAAGAACATGCAAGAACTGTAAAGATGCATGATCTTCTAAGGGACATGGCA
*
377323 TTGCGTATTGCAAAATCTCGATTCTTCGTAAAAGCCGGCACGATGTTAGAAAAGGCACCAGATGT
131 TTGCGTATTGCAAAATCTCGATTCTTCGTAAAAGCCGGAACGATGTTAGAAAAGGCACCAGATGT
*
377388 GCAAGAATGGAGCATGAATCTAGAGAAAGTTTCGTTGATGAGGAATCGGCGGTTATATATACCCT
196 GCAAGAATGGAGCATGAATCTAGAGAAAGTTTCGTTGATGAGGAATCAGCGGTTATATATACCCT
* *
377453 TGGAAATGTCACCCCCATAGTGCCCCAGGCTCACAACATTGTTGTTGTCT
261 TAGAAATGTCACCCCCAAAGTGCCCCAGGCTCACAACATTGTTGTTGTCT
* * *
377503 CATGCAGGCAGAGTATGACAATGGTCGTGCGATAATGAATAGACTTATCAGCAATTGTTTGTTAG
1 CATGCAGGCAGAGTATGACAATGGTCGTGCAATAATGAATAGACTCATCAGCAATTGCTTGTTAG
* *
377568 AAGTTTTTACTGAAGGAGAACATGCAAGAACTGTAAAGATGCATGATCTTTTAAGGGACATGGCA
66 AAGTTTTTACTGAAGAAGAACATGCAAGAACTGTAAAGATGCATGATCTTCTAAGGGACATGGCA
* * * *
377633 TTGCGTATTGCAAAATCTCGATTCTTGGTAAAAGCTGGAATGATGTT-GAAAAAGGTACCAGATG
131 TTGCGTATTGCAAAATCTCGATTCTTCGTAAAAGCCGGAACGATGTTAG-AAAAGGCACCAGATG
* * *
377697 TTCAAGAATGGAGCATGAATTTAGAGAAAGTTTCGTTGATGAGGAATCAGCGGTTATATATACCT
195 TGCAAGAATGGAGCATGAATCTAGAGAAAGTTTCGTTGATGAGGAATCAGCGGTTATATATACCC
* *
377762 TTAGAAATGTCACCTCCAAAGTGTCCCAGGCTCACAACATTGTTGTTGTCT
260 TTAGAAATGTCACCCCCAAAGTGCCCCAGGCTCACAACATTGTTGTTGTCT
377813 CAT
1 CAT
377816 TGCAATATAG
Statistics
Matches: 290, Mismatches: 22, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
309 1 0.00
310 289 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (310 bp):
CATGCAGGCAGAGTATGACAATGGTCGTGCAATAATGAATAGACTCATCAGCAATTGCTTGTTAG
AAGTTTTTACTGAAGAAGAACATGCAAGAACTGTAAAGATGCATGATCTTCTAAGGGACATGGCA
TTGCGTATTGCAAAATCTCGATTCTTCGTAAAAGCCGGAACGATGTTAGAAAAGGCACCAGATGT
GCAAGAATGGAGCATGAATCTAGAGAAAGTTTCGTTGATGAGGAATCAGCGGTTATATATACCCT
TAGAAATGTCACCCCCAAAGTGCCCCAGGCTCACAACATTGTTGTTGTCT
Found at i:378057 original size:141 final size:141
Alignment explanation
Indices: 377780--378048 Score: 337
Period size: 141 Copynumber: 1.9 Consensus size: 141
377770 GTCACCTCCA
** *
377780 AAGTGTCCCAGGCTCACAACATTGTTGTTGTCTCATTGCAATATAGTGAGTATTCCAGAAGGATT
1 AAGTGTCCCAGGCTCACAACATTGTTGTTGTCTCATTGCAATATAGAAAGTATTCCAGAAAGATT
* * ** * *
377845 TTTCAAGCATATGCATGGGCTTAGGATTCTTGATCTTTCCGGAAATCCTATCAAGAGTCTTCCAA
66 CTTCAAGCATATGAATGAACTCAAGATTCTTGATCTTTCCGGAAATCCTATCAAGAGTCTTCCAA
377910 TTTCCTTGTCG
131 TTTCCTTGTCG
* * * * * *
377921 AAGTGTCCCGGGCTCGCAACATTGTTGTTGTGTCTTTGTC-GTATAGAAAGTATTCCAGAAAGCT
1 AAGTGTCCCAGGCTCACAACATTGTTGTTGTCTCATTG-CAATATAGAAAGTATTCCAGAAAGAT
* *
377985 TCTTCGATG-ATATGAATGAACTCAAGATTCTTGATCTTTCC-TACAATCCTATCAAGAGTCTTC
65 TCTTC-AAGCATATGAATGAACTCAAGATTCTTGATCTTTCCGGA-AATCCTATCAAGAGTCTTC
378048 C
128 C
378049 GCATTCCTTA
Statistics
Matches: 108, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
140 1 0.01
141 104 0.96
142 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (141 bp):
AAGTGTCCCAGGCTCACAACATTGTTGTTGTCTCATTGCAATATAGAAAGTATTCCAGAAAGATT
CTTCAAGCATATGAATGAACTCAAGATTCTTGATCTTTCCGGAAATCCTATCAAGAGTCTTCCAA
TTTCCTTGTCG
Found at i:383125 original size:2 final size:2
Alignment explanation
Indices: 383118--383161 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
383108 GCACGTGAAC
383118 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
383160 AT
1 AT
383162 GTTTATGTTC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:383634 original size:14 final size:14
Alignment explanation
Indices: 383612--383664 Score: 51
Period size: 14 Copynumber: 4.1 Consensus size: 14
383602 ACCCTCTGTT
*
383612 CGAATATAAATGAA
1 CGAACATAAATGAA
383626 CGAACATAAAT---
1 CGAACATAAATGAA
383637 -GAACATAAATGAA
1 CGAACATAAATGAA
* *
383650 CGAATATAAACGAA
1 CGAACATAAATGAA
383664 C
1 C
383665 ATATAATCGA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
10 10 0.31
14 22 0.69
ACGTcount: A:0.57, C:0.13, G:0.13, T:0.17
Consensus pattern (14 bp):
CGAACATAAATGAA
Found at i:383649 original size:24 final size:24
Alignment explanation
Indices: 383612--383677 Score: 87
Period size: 24 Copynumber: 2.7 Consensus size: 24
383602 ACCCTCTGTT
*
383612 CGAATATAAATGAACGAACATAAA
1 CGAACATAAATGAACGAACATAAA
* *
383636 TGAACATAAATGAACGAATATAAA
1 CGAACATAAATGAACGAACATAAA
383660 CGAACATATAATCGAACG
1 CGAACATA-AAT-GAACG
383678 TTCATGAATG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
24 28 0.78
25 3 0.08
26 5 0.14
ACGTcount: A:0.55, C:0.14, G:0.14, T:0.18
Consensus pattern (24 bp):
CGAACATAAATGAACGAACATAAA
Found at i:384686 original size:319 final size:318
Alignment explanation
Indices: 383963--384895 Score: 1440
Period size: 311 Copynumber: 2.9 Consensus size: 318
383953 CAGAAATTTC
* * *
383963 CTGTGTTGTAGGTGAAGCTTAGTTTAAATTTAGG-GCGTGAATAGCGGCTCTTCTGCAAACCAAG
1 CTGTGTTGTAGGTGAAGCTTAGTTTAAGTTCAGGTGAGTGAATAGCGGCTCTTCTGCAAACCAAG
384027 GAACTTCATTTGGCCGTTTTCTTCATCAGCTGCTTCTCTCCGATCATCGTCTTCGAACAAGCTTC
66 GAACTTCATTTGGCCGTTTTCTTCATCAGCTGCTTCTCTCCGATCATCGTCTTCGAACAAGCTTC
* *** *
384092 TCAAAAGAGGTATTTATGGAA-TTTAACCGTTCTTTTTCCCCCAAAGCTCATGAACGGCTGTAGA
131 TCAAAAGAGGTATTTATGGAATTTTAA-CATTCTTTTT-TTTCAAAGCTCATAAACGGCTGTAGA
384156 ATAGATTCCTTTTTGTATTTAGAACTACCTGATTAGATGATATTTTCTTAA---TT-TTTATTT-
194 ATAGATTCCTTTTTGTATTTAGAACTACCTGATTAGATGATATTTTCTTAATTTTTATTTATTTA
*
384216 ATT--TAAATTTTTAATCAAATAAGATAATGATACATGTTACCTTTCGCACTGCTTTCCT
259 ATTAATAAATTTTTAATCAAATAAGATGATGATACATGTTACCTTTCGCACTGCTTTCCT
384274 CTGTGTTGTAGGTGAAGCTTAGTTTAAGTTCAGGTGAGTGAATAGCGGCTCTTCTGCAAACCAAG
1 CTGTGTTGTAGGTGAAGCTTAGTTTAAGTTCAGGTGAGTGAATAGCGGCTCTTCTGCAAACCAAG
*
384339 GAACTTCATTTGGCCGTTTTCTTCATCAG-TGCTTCTCTCCGATCATCGTCTTCGAACAACCTTC
66 GAACTTCATTTGGCCGTTTTCTTCATCAGCTGCTTCTCTCCGATCATCGTCTTCGAACAAGCTTC
384403 TCAAAAGAGGTATTTATGGAATTTTAACATTCTGTTTTTTTCAAAGCTCATAAACGGCTGTAGAA
131 TCAAAAGAGGTATTTATGGAATTTTAACATTCT-TTTTTTTCAAAGCTCATAAACGGCTGTAGAA
* *
384468 TAGATTCATTTTTGTATTGAGAACTACCTGATTAGATGATATTTTCTTAATTTTTATTTATTTAA
195 TAGATTCCTTTTTGTATTTAGAACTACCTGATTAGATGATATTTTCTTAATTTTTATTTATTTAA
*
384533 GTTAATAAATTTTTAATCGAATAAGATGATGATACATGTTACCTTTCGCACTGCTTTCCT
260 -TTAATAAATTTTTAATCAAATAAGATGATGATACATGTTACCTTTCGCACTGCTTTCCT
* * *
384593 CTGTGTTGAAGGTGAAGCTTAGTTTAAGCTCAGGTGAGTGAATAGCGGCTCTTCTGCAATCCAAG
1 CTGTGTTGTAGGTGAAGCTTAGTTTAAGTTCAGGTGAGTGAATAGCGGCTCTTCTGCAAACCAAG
*
384658 GAACTTCATTTGGCCGTTTTCTTCATCAGCTGCTTCTCTCCGATCATCATCTTCGAACAAGCTTC
66 GAACTTCATTTGGCCGTTTTCTTCATCAGCTGCTTCTCTCCGATCATCGTCTTCGAACAAGCTTC
* * *
384723 TCAAAAGGGGTATTTATGGAATTTCAACATTCTTTTTTTTCTTCAAATCTCATAAACGGCTGTAG
131 TCAAAAGAGGTATTTATGGAATTTTAACATTC--TTTTTT-TTCAAAGCTCATAAACGGCTGTAG
** * *
384788 AATAGATTCCTTTTCATATTTAGAACTA-CTTATTAGAAGATATTTTCTTAATTTTTATTTATTT
193 AATAGATTCCTTTTTGTATTTAGAACTACCTGATTAGATGATATTTTCTTAATTTTTATTTATTT
* * * * * *
384852 AATCTAAT-AATTTTTTAGCCAAGAAGATGAAGACACATGTTACC
258 AAT-TAATAAATTTTTAATCAAATAAGATGATGATACATGTTACC
384896 ACCGAATTAA
Statistics
Matches: 573, Mismatches: 33, Indels: 23
0.91 0.05 0.04
Matches are distributed among these distances:
311 163 0.28
312 67 0.12
314 2 0.00
315 7 0.01
316 1 0.00
317 2 0.00
319 144 0.25
320 94 0.16
321 45 0.08
322 48 0.08
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (318 bp):
CTGTGTTGTAGGTGAAGCTTAGTTTAAGTTCAGGTGAGTGAATAGCGGCTCTTCTGCAAACCAAG
GAACTTCATTTGGCCGTTTTCTTCATCAGCTGCTTCTCTCCGATCATCGTCTTCGAACAAGCTTC
TCAAAAGAGGTATTTATGGAATTTTAACATTCTTTTTTTTCAAAGCTCATAAACGGCTGTAGAAT
AGATTCCTTTTTGTATTTAGAACTACCTGATTAGATGATATTTTCTTAATTTTTATTTATTTAAT
TAATAAATTTTTAATCAAATAAGATGATGATACATGTTACCTTTCGCACTGCTTTCCT
Found at i:385146 original size:17 final size:17
Alignment explanation
Indices: 385124--385158 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
385114 TAAACAAATG
385124 ATATTTATT-TATTTTTA
1 ATATTT-TTATATTTTTA
385141 ATATTTTTATATTTTTA
1 ATATTTTTATATTTTTA
385158 A
1 A
385159 ACAAAGTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 15 0.88
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATATTTTTATATTTTTA
Found at i:390242 original size:23 final size:23
Alignment explanation
Indices: 390216--390269 Score: 92
Period size: 23 Copynumber: 2.3 Consensus size: 23
390206 CGCGAATATA
390216 TTCGTTTAGCGTT-TACTAACATG
1 TTCGTTTAGCGTTCT-CTAACATG
390239 TTCGTTTAGCGTTCTCTAACATG
1 TTCGTTTAGCGTTCTCTAACATG
390262 TTCGTTTA
1 TTCGTTTA
390270 TCATTTGTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
23 29 0.97
24 1 0.03
ACGTcount: A:0.19, C:0.19, G:0.17, T:0.46
Consensus pattern (23 bp):
TTCGTTTAGCGTTCTCTAACATG
Found at i:391491 original size:20 final size:20
Alignment explanation
Indices: 391462--391503 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
391452 TTAAAGCCGC
* *
391462 AACACGACTAAATTGAATAG
1 AACACAACTAAATTAAATAG
391482 AACACAACTAAATTAAATAG
1 AACACAACTAAATTAAATAG
391502 AA
1 AA
391504 TTAAAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.57, C:0.14, G:0.10, T:0.19
Consensus pattern (20 bp):
AACACAACTAAATTAAATAG
Found at i:406683 original size:141 final size:141
Alignment explanation
Indices: 406406--406674 Score: 342
Period size: 141 Copynumber: 1.9 Consensus size: 141
406396 GTCACCCCCA
* * *
406406 AAGTGTCCCAGGCTCACAACATTGTTGTTGTCTCAGTGCAATATAGTAAGTATTCCAGAAGGATT
1 AAGTGTCCCAGGCTCACAACATTGTTGTTCTCTCAGTGCAATATAGAAAGTATTCCAGAAAGATT
* * * * * *
406471 TTTCAAGCATATGGATGCACTTAAGGTTCTTGATCTTTCCTTCAACCCTATCAAGAGTCTTCCAA
66 CTTCAAGCATATGAATGAACTCAAGATTCTTGATCTTTCCTGCAACCCTATCAAGAGTCTTCCAA
406536 TTTCCTTGTCG
131 TTTCCTTGTCG
* * * * *** *
406547 AAGTGTCTCGGGCTCACAACATTGTTGTTCTCTGATTGTTGTATAGAAAGTATTCCAGAAAGCTT
1 AAGTGTCCCAGGCTCACAACATTGTTGTTCTCTCAGTGCAATATAGAAAGTATTCCAGAAAGATT
* * *
406612 CTTCGATG-ATATGAATGAACTCAAGATTCTTGATCTTTCCTGGAATCCTATCAAGAGTCTTCC
66 CTTC-AAGCATATGAATGAACTCAAGATTCTTGATCTTTCCTGCAACCCTATCAAGAGTCTTCC
406675 GCATTCCTTA
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
141 105 0.98
142 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (141 bp):
AAGTGTCCCAGGCTCACAACATTGTTGTTCTCTCAGTGCAATATAGAAAGTATTCCAGAAAGATT
CTTCAAGCATATGAATGAACTCAAGATTCTTGATCTTTCCTGCAACCCTATCAAGAGTCTTCCAA
TTTCCTTGTCG
Found at i:411597 original size:196 final size:198
Alignment explanation
Indices: 411251--411646 Score: 724
Period size: 196 Copynumber: 2.0 Consensus size: 198
411241 AATATTAAAC
* *
411251 TTATTTTTCTTTGTTTAAAAATATAAAAATATTAAAAGTTAGATATCATCTGAATATTTTTATTT
1 TTATTTTTC-TTGTTTAAAAATATAAAAATATTAAAAGTTAAATATCATCTAAATATTTTTATTT
*
411316 TTTAATTTTTATATCAATAACAATATTATGAGATAAATAAATTTTTGAGTAAAAATACGAATATA
65 TTTAATTTTTATATCAATAACAATATTATGAGATAAATAAAATTTTGAGTAAAAATACGAATATA
*
411381 TAAAAGATACTATAACTTTTCTTTAAATATGTGATTTGGCTTAGTAGTTATGATTGTTTCATCCA
130 TAAAAGATACTAAAACTTTTCTTTAAATATGTGATTTGGCTTAGTAGTTATGATTGTTTCATCCA
411446 TGCT
195 TGCT
*
411450 TTATTTTTC-TGTTTAAAAATATTAAAATATTAAAAGTTAAATATCATCTAAATATTTTTATTTT
1 TTATTTTTCTTGTTTAAAAATATAAAAATATTAAAAGTTAAATATCATCTAAATATTTTTATTTT
411514 TT-ATTTTTATATCAATAACAATATTATGAGATAAATAAAATTTTGAGTAAAAATACGAATATAT
66 TTAATTTTTATATCAATAACAATATTATGAGATAAATAAAATTTTGAGTAAAAATACGAATATAT
411578 AAAAGATACTAAAACTTTTCTTTAAATATGTGATTTGGCTTAGTAGTTATGATTGTTTCATCCAT
131 AAAAGATACTAAAACTTTTCTTTAAATATGTGATTTGGCTTAGTAGTTATGATTGTTTCATCCAT
411643 GCT
196 GCT
411646 T
1 T
411647 ACAATCTCAG
Statistics
Matches: 192, Mismatches: 5, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
196 129 0.67
197 54 0.28
199 9 0.05
ACGTcount: A:0.39, C:0.07, G:0.09, T:0.45
Consensus pattern (198 bp):
TTATTTTTCTTGTTTAAAAATATAAAAATATTAAAAGTTAAATATCATCTAAATATTTTTATTTT
TTAATTTTTATATCAATAACAATATTATGAGATAAATAAAATTTTGAGTAAAAATACGAATATAT
AAAAGATACTAAAACTTTTCTTTAAATATGTGATTTGGCTTAGTAGTTATGATTGTTTCATCCAT
GCT
Found at i:414844 original size:141 final size:141
Alignment explanation
Indices: 414649--414917 Score: 341
Period size: 141 Copynumber: 1.9 Consensus size: 141
414639 GTCATCCCCA
* * * *
414649 AAGTGCCCCAGGGTCACAACATTGTTGTTGTCTGGTTGCTGTTTAGAGAGTATTCCAGAAGGATT
1 AAGTGCCCCAGGGTCACAACATTGTTGTTGTCTCGTTGCTGTATAGAAAGTATTCCAGAAAGATT
* * * *
414714 TTTCAAGCAT-ATG-G-ATGCACTTAAGGTTCTTGATCTTTCCAGAAATCCTATCAAGAGTCTTC
66 CTTC--G-ATGATGCGAATGAACTCAAGATTCTTGATCTTTCCAGAAATCCTATCAAGAGTCTTC
414776 CAATTTCCTTGTCG
128 CAATTTCCTTGTCG
* * *
414790 AAGTGTCCC-GGGCTCACAACATTGTTGTTGTGTCGTTG-TCGTATAGAAAGTATTCCAGAAAGC
1 AAGTGCCCCAGGG-TCACAACATTGTTGTTGTCTCGTTGCT-GTATAGAAAGTATTCCAGAAAGA
* *
414853 TTCTTCGATGATGCGAATGAACTCAAGATTCTTGATCTTTCCGGGAATCCTATCAAGAGTCTTCC
64 TTCTTCGATGATGCGAATGAACTCAAGATTCTTGATCTTTCCAGAAATCCTATCAAGAGTCTTCC
414918 GCATTCCTTA
Statistics
Matches: 110, Mismatches: 13, Indels: 10
0.83 0.10 0.08
Matches are distributed among these distances:
138 2 0.02
139 4 0.04
140 5 0.05
141 99 0.90
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (141 bp):
AAGTGCCCCAGGGTCACAACATTGTTGTTGTCTCGTTGCTGTATAGAAAGTATTCCAGAAAGATT
CTTCGATGATGCGAATGAACTCAAGATTCTTGATCTTTCCAGAAATCCTATCAAGAGTCTTCCAA
TTTCCTTGTCG
Found at i:416409 original size:23 final size:23
Alignment explanation
Indices: 416375--416428 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
416365 CGCGAATATA
* *
416375 TTCGTTTTGCGTT-TACCAACATG
1 TTCGTTTAGCGTTCT-CCAAAATG
*
416398 TTCGTTTAGCGTTCTCTAAAATG
1 TTCGTTTAGCGTTCTCCAAAATG
416421 TTCGTTTA
1 TTCGTTTA
416429 TCATCTGTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.19, C:0.19, G:0.17, T:0.46
Consensus pattern (23 bp):
TTCGTTTAGCGTTCTCCAAAATG
Found at i:417655 original size:20 final size:20
Alignment explanation
Indices: 417626--417667 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
417616 TTAAAGCCGC
*
417626 AACACGACTAAATTGAATAG
1 AACACAACTAAATTGAATAG
417646 AACACAACTAAATTGAATAG
1 AACACAACTAAATTGAATAG
417666 AA
1 AA
417668 TTAAAATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.55, C:0.14, G:0.12, T:0.19
Consensus pattern (20 bp):
AACACAACTAAATTGAATAG
Found at i:421648 original size:20 final size:18
Alignment explanation
Indices: 421609--421651 Score: 59
Period size: 20 Copynumber: 2.3 Consensus size: 18
421599 TTAGCATGTT
*
421609 TAAAAATAAAATTTAAAA
1 TAAAAATAAAATTGAAAA
421627 TAAAAATAAAAACTTGAAAA
1 TAAAAAT-AAAA-TTGAAAA
421647 TAAAA
1 TAAAA
421652 GAGAGAACTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.32
19 4 0.18
20 11 0.50
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.23
Consensus pattern (18 bp):
TAAAAATAAAATTGAAAA
Found at i:428290 original size:140 final size:141
Alignment explanation
Indices: 428014--428281 Score: 342
Period size: 140 Copynumber: 1.9 Consensus size: 141
428004 GTCACCCCCA
* * *
428014 AAGTGTCCCAGGCTCACAACATTGTTGTTGTCTCAGTGCAATATAGTAAGTATTCCAGAAGGATT
1 AAGTGTCCCAGGCTCACAACATTGTTGTTCTCTCAGTGCAATATAGAAAGTATTCCAGAAAGATT
* * * * * *
428079 TTTCAAGCATATGGATGCACTTAAGGTTCTTGATCTTTCCTTCAACCCTATCAAGAGTCTTCCAA
66 CTTCAAGCATATGAATGAACTCAAGATTCTTGATCTTTCCTGCAACCCTATCAAGAGTCTTCCAA
428144 TTTCCTTGTCG
131 TTTCCTTGTCG
* * * *** *
428155 AAGTGTCTC-GGCTCACAACATTGTTGTTCTCTGATTGTTGTATAGAAAGTATTCCAGAAAGCTT
1 AAGTGTCCCAGGCTCACAACATTGTTGTTCTCTCAGTGCAATATAGAAAGTATTCCAGAAAGATT
* * *
428219 CTTCGATG-ATATGAATGAACTCAAGATTCTTGATCTTTCCTGGAATCCTATCAAGAGTCTTCC
66 CTTC-AAGCATATGAATGAACTCAAGATTCTTGATCTTTCCTGCAACCCTATCAAGAGTCTTCC
428282 GCATTCCTTA
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
140 97 0.91
141 10 0.09
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (141 bp):
AAGTGTCCCAGGCTCACAACATTGTTGTTCTCTCAGTGCAATATAGAAAGTATTCCAGAAAGATT
CTTCAAGCATATGAATGAACTCAAGATTCTTGATCTTTCCTGCAACCCTATCAAGAGTCTTCCAA
TTTCCTTGTCG
Found at i:429252 original size:29 final size:29
Alignment explanation
Indices: 429209--429291 Score: 139
Period size: 29 Copynumber: 2.8 Consensus size: 29
429199 CTCACCTAAC
429209 TAAATTGATGTAAGCAATGACATCATTAAT
1 TAAA-TGATGTAAGCAATGACATCATTAAT
*
429239 TAAATGATGTAAGCAATGACATCTTTAAT
1 TAAATGATGTAAGCAATGACATCATTAAT
*
429268 TAAATGATGTAAGTAATGACATCA
1 TAAATGATGTAAGCAATGACATCA
429292 ATTTAGTTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
29 46 0.92
30 4 0.08
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTAAT
Found at i:432267 original size:29 final size:29
Alignment explanation
Indices: 432224--432306 Score: 139
Period size: 29 Copynumber: 2.8 Consensus size: 29
432214 CTCACCTAAC
432224 TAAATTGATGTAAGCAATGACATCATTAAT
1 TAAA-TGATGTAAGCAATGACATCATTAAT
*
432254 TAAATGATGTAAGCAATGACATCTTTAAT
1 TAAATGATGTAAGCAATGACATCATTAAT
*
432283 TAAATGATGTAAGTAATGACATCA
1 TAAATGATGTAAGCAATGACATCA
432307 ATTTAGTTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
29 46 0.92
30 4 0.08
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTAAT
Found at i:436625 original size:196 final size:198
Alignment explanation
Indices: 436273--436668 Score: 688
Period size: 196 Copynumber: 2.0 Consensus size: 198
436263 AATATTAAAC
* *
436273 TTATTTTTCTTTGTTTAAAAATATAAAAATATTAAAAGTTAGATATCATCTGAATATTTTTATTT
1 TTATTTTTC-TTGTTTAAAAATATAAAAATATTAAAAGTTAAATATCATCTAAATATTTTTATTT
436338 TTTTATTTTTATATCAATAACAATATTATGAGATAAATAAATTTTTGAGTAAAAATACGAATATA
65 TTTTATTTTTATATCAATAACAATATTATGAGATAAATAAATTTTTGAGTAAAAATACGAATATA
* * * * *
436403 TAAAAGATACTATAACTTTTCTTTAAATATGTGATTTGGCTTAGTAGTTATGATTGTTTCATCCA
130 TAAAAGATACTAAAAATCTCCTTTAAATATGTGATTTGACTTAGTAGTTATGATTGTTTCATCCA
436468 TGCT
195 TGCT
*
436472 TTATTTTTC-TGTTTAAAAATATTAAAATATTAAAAGTTAAATATCATCTAAATATTTTTA-TTT
1 TTATTTTTCTTGTTTAAAAATATAAAAATATTAAAAGTTAAATATCATCTAAATATTTTTATTTT
436535 TTTATTTTTATATCAATAACAATATTATGAGATAAATAAATTTTTGAGTAAAAATACGAATATAT
66 TTTATTTTTATATCAATAACAATATTATGAGATAAATAAATTTTTGAGTAAAAATACGAATATAT
*
436600 AAAAGATACTAAAAATCTCCTTTAAATATGTGATTTGACTTGGTAGTTATGATTGTTTCATCCAT
131 AAAAGATACTAAAAATCTCCTTTAAATATGTGATTTGACTTAGTAGTTATGATTGTTTCATCCAT
436665 GCT
196 GCT
436668 T
1 T
436669 ACAATCTCAG
Statistics
Matches: 188, Mismatches: 9, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
196 131 0.70
197 48 0.26
199 9 0.05
ACGTcount: A:0.39, C:0.07, G:0.09, T:0.45
Consensus pattern (198 bp):
TTATTTTTCTTGTTTAAAAATATAAAAATATTAAAAGTTAAATATCATCTAAATATTTTTATTTT
TTTATTTTTATATCAATAACAATATTATGAGATAAATAAATTTTTGAGTAAAAATACGAATATAT
AAAAGATACTAAAAATCTCCTTTAAATATGTGATTTGACTTAGTAGTTATGATTGTTTCATCCAT
GCT
Found at i:439928 original size:141 final size:141
Alignment explanation
Indices: 439651--439919 Score: 380
Period size: 141 Copynumber: 1.9 Consensus size: 141
439641 GTCACCCCCA
* * * *
439651 AAGTGCCCCAGGGTCACAACATTGTTGTTGTCTGGTTGCTGTTTAGAGAGTATTCCAGAAGGATT
1 AAGTGCCCCAGGGTCACAACATTGTTGTTGTCTCGTTGCTGTATAGAAAGTATTCCAGAAAGATT
* *
439716 TTTCAAGCATATGGATGCACTTAAGGTTCTTGATCTTTCCGGAAATCCTATCAAGAGTCTTCCAA
66 CTTCAAGCATATGGATGCACTTAAGGTTCTTGATCTTTCCGCAAATCCTATCAAGAGTCTTCCAA
439781 TTTCCTTGTCG
131 TTTCCTTGTCG
* * *
439792 AAGTGTCCC-GGGCTCACAACATTGTTGTTGTGTCGTTG-TCGTATAGAAAGTATTCCAGAAAGC
1 AAGTGCCCCAGGG-TCACAACATTGTTGTTGTCTCGTTGCT-GTATAGAAAGTATTCCAGAAAGA
* ** * *
439855 TTCTTCCATTATATGGATGCACTTAAGGTTCTTGATCTTTCCTCCAATCCTATCAAGAGTCTTCC
64 TTCTTCAAGCATATGGATGCACTTAAGGTTCTTGATCTTTCCGCAAATCCTATCAAGAGTCTTCC
439920 GCATTCCTTA
Statistics
Matches: 112, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
140 4 0.04
141 108 0.96
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.35
Consensus pattern (141 bp):
AAGTGCCCCAGGGTCACAACATTGTTGTTGTCTCGTTGCTGTATAGAAAGTATTCCAGAAAGATT
CTTCAAGCATATGGATGCACTTAAGGTTCTTGATCTTTCCGCAAATCCTATCAAGAGTCTTCCAA
TTTCCTTGTCG
Found at i:439949 original size:141 final size:141
Alignment explanation
Indices: 439664--439959 Score: 328
Period size: 141 Copynumber: 2.1 Consensus size: 141
439654 TGCCCCAGGG
* * * * *
439664 TCACAACATTGTTGTTGTCTGGTTGCTGTTTAGAGAGTATTCCAGAAGGATTTTTCAAGCATATG
1 TCACAACATTGTTGTTGTCTCGTTGCTGTATAGAAAGTATTCCAGAAAGATTCTTCAAGCATATG
* *
439729 GATGCACTTAAGGTTCTTGATCTTTCCGGAAATCCTATCAAGAGTCTTCCAATTTCCTTGTCGAA
66 GATGCACTTAAGGTTCTTGATCTTTCCGCAAATCCTATCAAGAGTCTTCCAATTTCCTTATCGAA
* ** **
439794 GTGTCCCGGGC
131 ATGTCAAGACC
* * * **
439805 TCACAACATTGTTGTTGTGTCGTTG-TCGTATAGAAAGTATTCCAGAAAGCTTCTTCCATTATAT
1 TCACAACATTGTTGTTGTCTCGTTGCT-GTATAGAAAGTATTCCAGAAAGATTCTTCAAGCATAT
* * *
439869 GGATGCACTTAAGGTTCTTGATCTTTCCTCCAATCCTATCAAGAGTCTTCCGCA-TTCCTTATC-
65 GGATGCACTTAAGGTTCTTGATCTTTCCGCAAATCCTATCAAGAGTCTTCC-AATTTCCTTATCG
* *
439932 AAATTTGAAGAACC
129 AAATGTCAAG-ACC
**
439946 TCACTTCATTGTTG
1 TCACAACATTGTTG
439960 CTTGCTGATT
Statistics
Matches: 128, Mismatches: 24, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
140 6 0.05
141 121 0.95
142 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (141 bp):
TCACAACATTGTTGTTGTCTCGTTGCTGTATAGAAAGTATTCCAGAAAGATTCTTCAAGCATATG
GATGCACTTAAGGTTCTTGATCTTTCCGCAAATCCTATCAAGAGTCTTCCAATTTCCTTATCGAA
ATGTCAAGACC
Found at i:441220 original size:453 final size:453
Alignment explanation
Indices: 440374--441273 Score: 1480
Period size: 453 Copynumber: 2.0 Consensus size: 453
440364 CATATCACGG
* *
440374 ATTGCAATGTTGATTGCAGTGAGGAATACCCACTTTTCTCCAGGTTTATCCTCTTCTCACTTTCC
1 ATTGCAATGTTAATTGCAGTGAAGAATACCCACTTTTCTCCAGGTTTATCCTCTTCTCACTTTCC
* *
440439 TCCTTTTCATCTCTTATATGTCTTCATATAAAAGATTGTGGGAATATGAAAAAGTTGTTCTCCCC
66 TCCTTTTCATCTCTTAAATCTCTTCATATAAAAGATTGTGGGAATATGAAAAAGTTGTTCTCCCC
* ** **
440504 AAACTGTGTGCCGCCAAATTTACAAAGGCTTAGAGTTGGTGGGTGTAAGCAATTGGAGGAAATAA
131 AAACTGTGTGCCGCCAAATTTACAAAGGCTCAGAGTCAGAAGGTGTAAGCAATTGGAGGAAATAA
*
440569 TAACATCAGAAGTTGAACCGGAGGAAAGAGGAATGGTTATCACGGAGTTTCATCTTCCACAACTA
196 TAACATCAGAAGTTGAAACGGAGGAAAGAGGAATGGTTATCACGGAGTTTCATCTTCCACAACTA
* * *
440634 CGACAATTGTTGTTGAATGGTCTACCGGAATTGAAGAGCATTTGCAGTGCTGGTGGAGTACTGGT
261 CGACAATTGGTGTTGAAGGGTCTACCGGAATTGAAGAACATTTGCAGTGCTGGTGGAGTACTGGT
*** * * *
440699 TTGTGATTCTCTTGTCGTATTTCAGATTGTATACTGTCCAAAATTAAAGAGGATGGGTCTTAATC
326 TTGTGATTCTCTTGGAATAATTCAGATTGTAGACTGTCCAAAATTAAAGAGGATGGGCCTTAATC
440764 TTCCCAAACTTGATAATGTCCCACCATCTGCATCTGCAAATCTTTCTCTTTCAGTTCAGGAGT
391 TTCCCAAACTTGATAATGTCCCACCATCTGCATCTGCAAATCTTTCTCTTTCAGTTCAGGAGT
*
440827 ATTGCAATGTTAATTGCAGTGAAGAATACCCGCTTTTCTCCAGGTTTATCCTCTTCTCACTTTCC
1 ATTGCAATGTTAATTGCAGTGAAGAATACCCACTTTTCTCCAGGTTTATCCTCTTCTCACTTTCC
* *
440892 TCCTTTTCATCTCTTAAATCTCTTTATATAAATGATTGTGGGAATATGAAAAAGTTGTTCTCCCC
66 TCCTTTTCATCTCTTAAATCTCTTCATATAAAAGATTGTGGGAATATGAAAAAGTTGTTCTCCCC
* * *
440957 AAACTGTGTGCCGCCAAATTTACAAATGCTCAGTGTCAGAAGTTGTAAGCAATTGGAGGAAATAA
131 AAACTGTGTGCCGCCAAATTTACAAAGGCTCAGAGTCAGAAGGTGTAAGCAATTGGAGGAAATAA
*
441022 TAACATCAGAAGTTGAAACGGAGGAAAGAGGAATGGTTATCACGGAGTTTCATCTTCCACAATTA
196 TAACATCAGAAGTTGAAACGGAGGAAAGAGGAATGGTTATCACGGAGTTTCATCTTCCACAACTA
* * * *
441087 GGGCTATTGAGT-TTG-GGGGATCTACCGGAATTGAAGAACATTTGCAGTGCTGGTGGAGTACTG
261 CGACAATTG-GTGTTGAAGGG-TCTACCGGAATTGAAGAACATTTGCAGTGCTGGTGGAGTACTG
**
441150 GTTTGTGATTCTCTTGGAATAATTGGGATTGTAGACTGTCCAAAATTAAAGAGGATGGGCCTTAA
324 GTTTGTGATTCTCTTGGAATAATTCAGATTGTAGACTGTCCAAAATTAAAGAGGATGGGCCTTAA
441215 TCTTCCCAAACTTGATAATGTCCCACCATCTGCATCTGCAAATCTTTCTCTTTCAGTTC
389 TCTTCCCAAACTTGATAATGTCCCACCATCTGCATCTGCAAATCTTTCTCTTTCAGTTC
441274 GGATAAGACC
Statistics
Matches: 413, Mismatches: 32, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
452 2 0.00
453 410 0.99
454 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.33
Consensus pattern (453 bp):
ATTGCAATGTTAATTGCAGTGAAGAATACCCACTTTTCTCCAGGTTTATCCTCTTCTCACTTTCC
TCCTTTTCATCTCTTAAATCTCTTCATATAAAAGATTGTGGGAATATGAAAAAGTTGTTCTCCCC
AAACTGTGTGCCGCCAAATTTACAAAGGCTCAGAGTCAGAAGGTGTAAGCAATTGGAGGAAATAA
TAACATCAGAAGTTGAAACGGAGGAAAGAGGAATGGTTATCACGGAGTTTCATCTTCCACAACTA
CGACAATTGGTGTTGAAGGGTCTACCGGAATTGAAGAACATTTGCAGTGCTGGTGGAGTACTGGT
TTGTGATTCTCTTGGAATAATTCAGATTGTAGACTGTCCAAAATTAAAGAGGATGGGCCTTAATC
TTCCCAAACTTGATAATGTCCCACCATCTGCATCTGCAAATCTTTCTCTTTCAGTTCAGGAGT
Found at i:441778 original size:23 final size:23
Alignment explanation
Indices: 441744--441797 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
441734 CGCGAATATA
* *
441744 TTCGTTTTGCGTTTATC-AACATG
1 TTCGTTTAGCG-TTATCTAAAATG
*
441767 TTCGTTTAGCGTTCTCTAAAATG
1 TTCGTTTAGCGTTATCTAAAATG
441790 TTCGTTTA
1 TTCGTTTA
441798 TCATCTATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 4 0.15
23 23 0.85
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.48
Consensus pattern (23 bp):
TTCGTTTAGCGTTATCTAAAATG
Found at i:443025 original size:20 final size:20
Alignment explanation
Indices: 442996--443037 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
442986 TTAAAGCCGC
*
442996 AACACGACTAAATTGAATAG
1 AACACAACTAAATTGAATAG
443016 AACACAACTAAATTGAATAG
1 AACACAACTAAATTGAATAG
443036 AA
1 AA
443038 TTAAAATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.55, C:0.14, G:0.12, T:0.19
Consensus pattern (20 bp):
AACACAACTAAATTGAATAG
Found at i:447598 original size:18 final size:20
Alignment explanation
Indices: 447575--447617 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
447565 TTAGCATGTT
447575 TAAAAAT-AAAACTT-AAAA
1 TAAAAATAAAAACTTGAAAA
447593 TAAAAATAAAAACTTGAAAA
1 TAAAAATAAAAACTTGAAAA
447613 TAAAA
1 TAAAA
447618 GAGAGAACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 7 0.30
19 7 0.30
20 9 0.39
ACGTcount: A:0.72, C:0.05, G:0.02, T:0.21
Consensus pattern (20 bp):
TAAAAATAAAAACTTGAAAA
Found at i:460560 original size:141 final size:141
Alignment explanation
Indices: 460283--460551 Score: 342
Period size: 141 Copynumber: 1.9 Consensus size: 141
460273 GTCACCCCCA
* * *
460283 AAGTGTCCCAGGCTCACAACATTGTTGTTGTCTCAGTGCAATATAGTAAGTATTCCAGAAGGATT
1 AAGTGTCCCAGGCTCACAACATTGTTGTTCTCTCAGTGCAATATAGAAAGTATTCCAGAAAGATT
* * * * * *
460348 TTTCAAGCATATGGATGCACTTAAGGTTCTTGATCTTTCCTTCAACCCTATCAAGAGTCTTCCAA
66 CTTCAAGCATATGAATGAACTCAAGATTCTTGATCTTTCCTGCAACCCTATCAAGAGTCTTCCAA
460413 TTTCCTTGTCG
131 TTTCCTTGTCG
* * * * *** *
460424 AAGTGTCTCGGGCTCACAACATTGTTGTTCTCTGATTGTTGTATAGAAAGTATTCCAGAAAGCTT
1 AAGTGTCCCAGGCTCACAACATTGTTGTTCTCTCAGTGCAATATAGAAAGTATTCCAGAAAGATT
* * *
460489 CTTCGATG-ATATGAATGAACTCAAGATTCTTGATCTTTCCTGGAATCCTATCAAGAGTCTTCC
66 CTTC-AAGCATATGAATGAACTCAAGATTCTTGATCTTTCCTGCAACCCTATCAAGAGTCTTCC
460552 GCATTCCTTA
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
141 105 0.98
142 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (141 bp):
AAGTGTCCCAGGCTCACAACATTGTTGTTCTCTCAGTGCAATATAGAAAGTATTCCAGAAAGATT
CTTCAAGCATATGAATGAACTCAAGATTCTTGATCTTTCCTGCAACCCTATCAAGAGTCTTCCAA
TTTCCTTGTCG
Found at i:462854 original size:41 final size:39
Alignment explanation
Indices: 462747--462857 Score: 109
Period size: 39 Copynumber: 2.8 Consensus size: 39
462737 TCGGGCCGGG
* * * *
462747 TATATAT-ATTTAAATTAAATATATAAATATTATATATA
1 TATATATAATATAAAATAAATTTATTAATATTATATATA
* * * *
462785 TATTTTTAATTTAAATTAAATTTATTAATATTATATATA
1 TATATATAATATAAAATAAATTTATTAATATTATATATA
462824 TATATATATATATAAAATAATTATTT-TTAATATT
1 TATATATA-ATATAAAATAA--ATTTATTAATATT
462858 TATCGGGCCG
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
38 5 0.08
39 35 0.57
40 9 0.15
41 8 0.13
42 4 0.07
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (39 bp):
TATATATAATATAAAATAAATTTATTAATATTATATATA
Found at i:465107 original size:322 final size:321
Alignment explanation
Indices: 464504--465109 Score: 986
Period size: 322 Copynumber: 1.9 Consensus size: 321
464494 TTCCCAGAAA
* *
464504 TTTCCTCTGTGTTGTAGGTGAAGCTTAGTTTAAATATAGGTGAGTGAATAGCGGCTCTTCTGCAA
1 TTTCCTCTGTGTTGTAGGCGAAACTTAGTTTAAATATAGGTGAGTGAATAGCGGCTCTTCTGCAA
464569 ACCAAGGAACTTCATTTGGCCGTTTTCTTCATCAGCTGCTTCTCTCCGAGATCATCGTCTTCGAA
66 ACCAAGGAACTTCATTTGGCCGTTTTCTTCATCAGCTGCTTCTCTCC-AGATCATCGTCTTCGAA
*
464634 CAAGCTTCTCAAAAGAGGTATTTATGGAATTTAACCATTCTTTTTTTCTCAAAGCTCATAAACGG
130 CAACCTTCTCAAAAGAGGTATTTATGGAATTTAACCATTCTTTTTTTCTCAAAGCTCATAAACGG
* **
464699 CTGTAGAATAGATTCCTTTTTGTATTTAGAACTACCTGATTAGATGATATTTTCTTAATTTTTAT
195 CCGTAGAATAGATTCCTTTTCATATTTAGAACTACCTGATTAGATGATATTTTCTTAATTTTTAT
464764 TTATTTAAGTTAATAAATTTTTAATCAAATAAGATGATGATACATGTTACCTTTCGCACTGC
260 TTATTTAAGTTAATAAATTTTTAATCAAATAAGATGATGATACATGTTACCTTTCGCACTGC
*
464826 TTTCCTCTGTGTTGTAGGCGAAACTTAGTTTAAGT-TCAGGTGAGTGAATAGCGGCTCTTCTGCA
1 TTTCCTCTGTGTTGTAGGCGAAACTTAGTTTAAATAT-AGGTGAGTGAATAGCGGCTCTTCTGCA
* *
464890 ACCCAAGGAACTTCATTTGGCCGTTTTCTTCATCAGCTGCTTTTCTCC-GATCATCGTCTTCGAA
65 AACCAAGGAACTTCATTTGGCCGTTTTCTTCATCAGCTGCTTCTCTCCAGATCATCGTCTTCGAA
*
464954 CAACCTTCTCAAAAGAGGTATTTATGGAATTTCAA-CATTCTGTTTTTTTTTTCAAAGCTCATAA
130 CAACCTTCTCAAAAGAGGTATTTATGGAATTT-AACCATTC---TTTTTTTCTCAAAGCTCATAA
* * * *
465018 ACGGCCGTAGATTTGATTCCTTTTCATATTTAGAACTACCTTATTAGATGATATTTTTTTAATTT
191 ACGGCCGTAGAATAGATTCCTTTTCATATTTAGAACTACCTGATTAGATGATATTTTCTTAATTT
*
465083 TTATTTATTTAA-TCTAATAATTTTTTA
256 TTATTTATTTAAGT-TAATAAATTTTTA
465110 GCCAAGATGA
Statistics
Matches: 263, Mismatches: 15, Indels: 11
0.91 0.05 0.04
Matches are distributed among these distances:
320 52 0.20
321 3 0.01
322 106 0.40
323 102 0.39
ACGTcount: A:0.26, C:0.17, G:0.16, T:0.41
Consensus pattern (321 bp):
TTTCCTCTGTGTTGTAGGCGAAACTTAGTTTAAATATAGGTGAGTGAATAGCGGCTCTTCTGCAA
ACCAAGGAACTTCATTTGGCCGTTTTCTTCATCAGCTGCTTCTCTCCAGATCATCGTCTTCGAAC
AACCTTCTCAAAAGAGGTATTTATGGAATTTAACCATTCTTTTTTTCTCAAAGCTCATAAACGGC
CGTAGAATAGATTCCTTTTCATATTTAGAACTACCTGATTAGATGATATTTTCTTAATTTTTATT
TATTTAAGTTAATAAATTTTTAATCAAATAAGATGATGATACATGTTACCTTTCGCACTGC
Found at i:469240 original size:141 final size:141
Alignment explanation
Indices: 468974--469240 Score: 354
Period size: 141 Copynumber: 1.9 Consensus size: 141
468964 GTCACCCCCA
* * *
468974 AAGTGCCCCAGGCTCACAACATTGTTGTTGTCTGGTTGTGATATAGAGAGTATTCCAGAAGGATT
1 AAGTGCCCCAGGCTCACAACATTGGTGTTGTCTGGTTGTGATATAGAAAGTATTCCAGAAAGATT
* * * * * * *
469039 TTTCAAGCATATGGATGCACTTAAGGTTCTTGATCTTTCCGGAAATCCTATCGAGTGTCTTTCAA
66 CTTCAAGCATATGAATGAACTCAAGATTCTTGATCTTTCCGGAAATCCTATCAAGAGTCTTTCAA
469104 TTTCCTTGTCG
131 TTTCCTTGTCG
* * *
469115 AAGTGTCCCGGGCTCACAACATTGGTGTTGTCTGGTTGTGATATAGAAAGTATTCCAGAAAGCTT
1 AAGTGCCCCAGGCTCACAACATTGGTGTTGTCTGGTTGTGATATAGAAAGTATTCCAGAAAGATT
* ** *** *
469180 CTTCGATTATATGAATGAACTCAAGATTCTTGATCTTTCCTTCAATCGTATCAAGAGTCTT
66 CTTCAAGCATATGAATGAACTCAAGATTCTTGATCTTTCCGGAAATCCTATCAAGAGTCTT
469241 CCGCATTCCT
Statistics
Matches: 106, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
141 106 1.00
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (141 bp):
AAGTGCCCCAGGCTCACAACATTGGTGTTGTCTGGTTGTGATATAGAAAGTATTCCAGAAAGATT
CTTCAAGCATATGAATGAACTCAAGATTCTTGATCTTTCCGGAAATCCTATCAAGAGTCTTTCAA
TTTCCTTGTCG
Found at i:469272 original size:141 final size:141
Alignment explanation
Indices: 468986--469272 Score: 299
Period size: 141 Copynumber: 2.0 Consensus size: 141
468976 GTGCCCCAGG
* * * *
468986 CTCACAACATTGTTGTTGTCTGGTTGTGATATAGAGAGTATTCCAGAAGGATTTTTCAAGCATAT
1 CTCACAACATTGGTGTTGTCTGGTTGTGATATAGAAAGTATTCCAGAAAGATTCTTCAAGCATAT
* * * * * * *
469051 GGATGCACTTAAGGTTCTTGATCTTTCCGGAAATCCTATCGAGTGTCTTTCAATTTCCTTGTCGA
66 GAATGAACTCAAGATTCTTGATCTTTCCGGAAATCCTATCAAGAGTCTTCCAATTTCCTTGTCGA
* ** **
469116 AGTGTCCCGGG
131 AATGTCAAGAC
* * **
469127 CTCACAACATTGGTGTTGTCTGGTTGTGATATAGAAAGTATTCCAGAAAGCTTCTTCGATTATAT
1 CTCACAACATTGGTGTTGTCTGGTTGTGATATAGAAAGTATTCCAGAAAGATTCTTCAAGCATAT
*** * *
469192 GAATGAACTCAAGATTCTTGATCTTTCCTTCAATCGTATCAAGAGTCTTCCGCA-TTCCTTGTC-
66 GAATGAACTCAAGATTCTTGATCTTTCCGGAAATCCTATCAAGAGTCTTCC-AATTTCCTTGTCG
* *
469255 AAATTTGAAGAAC
130 AAATGTCAAG-AC
469268 CTCAC
1 CTCAC
469273 TTCATTGTTG
Statistics
Matches: 117, Mismatches: 27, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
140 5 0.04
141 111 0.95
142 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.36
Consensus pattern (141 bp):
CTCACAACATTGGTGTTGTCTGGTTGTGATATAGAAAGTATTCCAGAAAGATTCTTCAAGCATAT
GAATGAACTCAAGATTCTTGATCTTTCCGGAAATCCTATCAAGAGTCTTCCAATTTCCTTGTCGA
AATGTCAAGAC
Found at i:483919 original size:60 final size:60
Alignment explanation
Indices: 483746--483935 Score: 249
Period size: 60 Copynumber: 3.2 Consensus size: 60
483736 TCTTTCTTAT
* * * * * * *
483746 CATCAACTGTATCAT-TAGCACATTGTTTACTCC-TGTCTTGTCCCAACTCGTTTTTCTTAT
1 CATCAACCGTATCATCT-GCACGTCGTTTAC-CCTTGTCTTGTCCCAACTCCTTTATCTCAC
483806 CATCAACCGTATCATCTGCACGTCGTTTACCCTTGTCTTGTCCCAACTCCTTTATCTCAC
1 CATCAACCGTATCATCTGCACGTCGTTTACCCTTGTCTTGTCCCAACTCCTTTATCTCAC
* * * *
483866 CATCAACCGTATCATCTGCACGTCGTTTTCCCTTGTCCTGTCTCAACTCCTTTATCTCGC
1 CATCAACCGTATCATCTGCACGTCGTTTACCCTTGTCTTGTCCCAACTCCTTTATCTCAC
483926 CATCAACCGT
1 CATCAACCGT
483936 TTTATCTACA
Statistics
Matches: 117, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
59 2 0.02
60 114 0.97
61 1 0.01
ACGTcount: A:0.18, C:0.34, G:0.11, T:0.37
Consensus pattern (60 bp):
CATCAACCGTATCATCTGCACGTCGTTTACCCTTGTCTTGTCCCAACTCCTTTATCTCAC
Found at i:493487 original size:19 final size:18
Alignment explanation
Indices: 493458--493519 Score: 56
Period size: 18 Copynumber: 3.4 Consensus size: 18
493448 ATCTAATATG
*
493458 TAATATACAA-TACTATT
1 TAATATGCAATTACTATT
*
493475 TACAATATGCAATTATTATT
1 T--AATATGCAATTACTATT
*
493495 TAATATGCAACTA-TCATT
1 TAATATGCAATTACT-ATT
493513 TAATATG
1 TAATATG
493520 TACTATCACA
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
17 2 0.05
18 21 0.55
19 8 0.21
20 7 0.18
ACGTcount: A:0.42, C:0.11, G:0.05, T:0.42
Consensus pattern (18 bp):
TAATATGCAATTACTATT
Found at i:493527 original size:17 final size:18
Alignment explanation
Indices: 493478--493519 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
493468 TACTATTTAC
* *
493478 AATATGCAATTATTATTT
1 AATATGCAACTATCATTT
493496 AATATGCAACTATCATTT
1 AATATGCAACTATCATTT
493514 AATATG
1 AATATG
493520 TACTATCACA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.40, C:0.10, G:0.07, T:0.43
Consensus pattern (18 bp):
AATATGCAACTATCATTT
Found at i:496850 original size:31 final size:31
Alignment explanation
Indices: 496812--496873 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
496802 AAGGAAAAAG
496812 ATGAGCTTTGCTTCTGTTACTTTGGATTAAT
1 ATGAGCTTTGCTTCTGTTACTTTGGATTAAT
496843 ATGAGCTTTGCTTCTGTTACTTTGGATTAAT
1 ATGAGCTTTGCTTCTGTTACTTTGGATTAAT
496874 CAAAATTCAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.19, C:0.13, G:0.19, T:0.48
Consensus pattern (31 bp):
ATGAGCTTTGCTTCTGTTACTTTGGATTAAT
Found at i:497175 original size:18 final size:18
Alignment explanation
Indices: 497130--497176 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
497120 TAAATTATAA
497130 AAAAT-CTCAAAATTCTT
1 AAAATCCTCAAAATTCTT
* *
497147 AAAAACTTCAAAATTCTT
1 AAAATCCTCAAAATTCTT
497165 AAAATCCTCAAA
1 AAAATCCTCAAA
497177 CTCTAACATT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
17 4 0.16
18 21 0.84
ACGTcount: A:0.51, C:0.19, G:0.00, T:0.30
Consensus pattern (18 bp):
AAAATCCTCAAAATTCTT
Found at i:498655 original size:21 final size:21
Alignment explanation
Indices: 498606--498645 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
498596 AATTAAAACA
498606 AAAT-TTTCATGATTTATTTG
1 AAATGTTTCATGATTTATTTG
*
498626 AAATTTTTCATGATTTATTT
1 AAATGTTTCATGATTTATTT
498646 TTCATGTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.30, C:0.05, G:0.07, T:0.57
Consensus pattern (21 bp):
AAATGTTTCATGATTTATTTG
Found at i:502195 original size:2 final size:2
Alignment explanation
Indices: 502188--502219 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
502178 ACTAAGCATA
502188 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
502220 CAAGGATTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:505066 original size:19 final size:21
Alignment explanation
Indices: 505032--505073 Score: 61
Period size: 19 Copynumber: 2.1 Consensus size: 21
505022 GAGGTGGGAG
505032 TAAATAAAATTCAATTTGATT
1 TAAATAAAATTCAATTTGATT
*
505053 TAAA-AAAATT-AATTTGTTT
1 TAAATAAAATTCAATTTGATT
505072 TA
1 TA
505074 TTTGATTTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 10 0.50
20 6 0.30
21 4 0.20
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.45
Consensus pattern (21 bp):
TAAATAAAATTCAATTTGATT
Found at i:507189 original size:21 final size:21
Alignment explanation
Indices: 507165--507225 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
507155 AATTTTGAAA
507165 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
*
507186 AAAT-G-TTTC----TTT-GA
1 AAATGGTTTTCAAAGTTTGGT
*
507200 AAATGATTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
507221 AAATG
1 AAATG
507226 TTTCTTTGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 14
0.64 0.06 0.30
Matches are distributed among these distances:
14 5 0.17
15 3 0.10
16 4 0.13
19 4 0.13
20 4 0.13
21 10 0.33
ACGTcount: A:0.33, C:0.05, G:0.20, T:0.43
Consensus pattern (21 bp):
AAATGGTTTTCAAAGTTTGGT
Found at i:507256 original size:37 final size:37
Alignment explanation
Indices: 507158--507278 Score: 167
Period size: 35 Copynumber: 3.4 Consensus size: 37
507148 GACAACCAAT
* *
507158 TTTGAAAAAATGGTTTTCAAAGTTTGGTAAATGTTTC
1 TTTGAAAAATTGTTTTTCAAAGTTTGGTAAATGTTTC
*
507195 TTTG-AAAA-TGATTTTCAAAGTTTGGTAAATGTTTC
1 TTTGAAAAATTGTTTTTCAAAGTTTGGTAAATGTTTC
*
507230 TTTGAAAAATTGTTTTTCAAAGTTTGGTAGATGTTT-
1 TTTGAAAAATTGTTTTTCAAAGTTTGGTAAATGTTTC
* *
507266 GTTGAAATATTGT
1 TTTGAAAAATTGT
507279 AATGGGATAA
Statistics
Matches: 77, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
35 30 0.39
36 19 0.25
37 28 0.36
ACGTcount: A:0.31, C:0.04, G:0.19, T:0.46
Consensus pattern (37 bp):
TTTGAAAAATTGTTTTTCAAAGTTTGGTAAATGTTTC
Found at i:509434 original size:93 final size:93
Alignment explanation
Indices: 509271--509460 Score: 249
Period size: 93 Copynumber: 2.0 Consensus size: 93
509261 GGTTTTAATT
* * * * * *
509271 GGGTTAGTAATATGATAATGATTGTTTGGTATTTTAGTACAAAAATATGTGGGTTAATTAAACCC
1 GGGTTAGTAATATGACAATAATTATTTAGTATTTTAGTACAAAAATATGTGGGTAAATCAAACCC
*
509336 ACGTGGG-AGCCATTTCATCTAGGTATG
66 ACGTGGGTAGCCATTCCATCTAGGTATG
* *
509363 GGGTGTAGTAATATGACAATAATTATTTAGTATTTTAGTGCTAAAAT-TGGTGGGTAAATCAAAC
1 GGGT-TAGTAATATGACAATAATTATTTAGTATTTTAGTACAAAAATAT-GTGGGTAAATCAAAC
* *
509427 CCACGTGGGTGGTCATTCCATCTAGGTATG
64 CCACGTGGGTAGCCATTCCATCTAGGTATG
509457 GGGT
1 GGGT
509461 ATTGTGTTTC
Statistics
Matches: 84, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
92 5 0.06
93 58 0.69
94 21 0.25
ACGTcount: A:0.29, C:0.11, G:0.25, T:0.35
Consensus pattern (93 bp):
GGGTTAGTAATATGACAATAATTATTTAGTATTTTAGTACAAAAATATGTGGGTAAATCAAACCC
ACGTGGGTAGCCATTCCATCTAGGTATG
Found at i:514868 original size:27 final size:27
Alignment explanation
Indices: 514821--514876 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
514811 TAATCTTTAG
514821 TTCTTTTAATATTGAATGAATTAAAGA
1 TTCTTTTAATATTGAATGAATTAAAGA
* *
514848 TTCTTTTAATTATTTAA-GAATTATAGA
1 TTCTTTTAA-TATTGAATGAATTAAAGA
514875 TT
1 TT
514877 TTTGACATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 20 0.77
28 6 0.23
ACGTcount: A:0.38, C:0.04, G:0.09, T:0.50
Consensus pattern (27 bp):
TTCTTTTAATATTGAATGAATTAAAGA
Found at i:515548 original size:18 final size:18
Alignment explanation
Indices: 515521--515655 Score: 76
Period size: 18 Copynumber: 6.9 Consensus size: 18
515511 CAATCAGAAC
*
515521 AAAAAGAGAAAAAAAAAG
1 AAAAAAAGAAAAAAAAAG
515539 AAAAAAAGAAAAGAAACAGAG
1 AAAAAAAGAAAA-AAA-A-AG
* * * *
515560 CAAAAAAA-AGAGAGAAGG
1 -AAAAAAAGAAAAAAAAAG
515578 AAAAAAAGAAATTAAAACAAAG
1 AAAAAAAG-AA--AAAA-AAAG
* *
515600 AAAAAAGAGCAAAAAAGAAC
1 AAAAAA-AG-AAAAAAAAAG
515620 AAAAAAAGAAAAGAAAAA-
1 AAAAAAAGAAAA-AAAAAG
*
515638 AAATAAAGAAAAAGAAAA
1 AAAAAAAGAAAAA-AAAA
515656 AGGGACGATA
Statistics
Matches: 91, Mismatches: 14, Indels: 24
0.71 0.11 0.19
Matches are distributed among these distances:
17 8 0.09
18 31 0.34
19 11 0.12
20 11 0.12
21 10 0.11
22 16 0.18
23 4 0.04
ACGTcount: A:0.79, C:0.04, G:0.16, T:0.02
Consensus pattern (18 bp):
AAAAAAAGAAAAAAAAAG
Found at i:517675 original size:43 final size:43
Alignment explanation
Indices: 517592--517692 Score: 121
Period size: 43 Copynumber: 2.3 Consensus size: 43
517582 GCCATCTACA
**
517592 ATTTCAACTCCACGACGGAGGATATCATACAAACGGATCCACG
1 ATTTCAACTCCACGACGGAGGATATCATACAAACACATCCACG
** * **
517635 ATTTCAACTCCACGACGGAGGATATTGTGCCCACACATCCACG
1 ATTTCAACTCCACGACGGAGGATATCATACAAACACATCCACG
* *
517678 GTTTCAACTTCACGA
1 ATTTCAACTCCACGA
517693 TGAAGGAAAT
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.22
Consensus pattern (43 bp):
ATTTCAACTCCACGACGGAGGATATCATACAAACACATCCACG
Found at i:518021 original size:335 final size:335
Alignment explanation
Indices: 517135--517994 Score: 1578
Period size: 335 Copynumber: 2.6 Consensus size: 335
517125 GTTTCATTTT
* * * * *
517135 AGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCAAAACAGCACAAGCTTGGATTTCAAC
1 AGAGCCAATTTCAACTTCACGACGAAGGATATTGGACTCGAAACAACACAAGTTTGGATTTCAAC
*
517200 TTCACGACGAAGGATATTCAAGTC-AGACTCAACTTCACGACGAAGGGGCCATCTACAATTTCAA
66 TTCACGACGAAGGATATTCAAGTCAAGGCTCAACTTCACGACGAAGGGGCCATCTACAATTTCAA
* *
517264 TTCCACGATGGAGGATATCATACAAACGGATCCACGATTTCAACTCCACGACGGAGGATATTGTG
131 CTCCACGACGGAGGATATCATACAAACGGATCCACGATTTCAACTCCACGACGGAGGATATTGTG
*
517329 CCCACACATCCACGGTTTCAATTTCACGATGAAGGAAATCGTACACACAAACAACATCCATCTCT
196 CCCACACATCCACGGTTTCAACTTCACGATGAAGGAAATCGTACACACAAACAACATCCATCTCT
517394 AGATTGGATTTCAACTTCACGACGAAGGATATCCAACTCAAAGAAGGAATGTCTATTAATAAACT
261 AGATTGGATTTCAACTTCACGACGAAGGATATCCAACTCAAAGAAGGAATGTCTATTAATAAACT
517459 TTCCAGCTTC
326 TTCCAGCTTC
517469 AGAGCCAATTTCAACTTCACGACGAAGGATATTGGACTCGAAACAACACAAGTTTGGATTTCAAC
1 AGAGCCAATTTCAACTTCACGACGAAGGATATTGGACTCGAAACAACACAAGTTTGGATTTCAAC
517534 TTCACGACGAAGGATATTCAAGTCAAGGCTCAACTTCACGACGAAGGGGCCATCTACAATTTCAA
66 TTCACGACGAAGGATATTCAAGTCAAGGCTCAACTTCACGACGAAGGGGCCATCTACAATTTCAA
517599 CTCCACGACGGAGGATATCATACAAACGGATCCACGATTTCAACTCCACGACGGAGGATATTGTG
131 CTCCACGACGGAGGATATCATACAAACGGATCCACGATTTCAACTCCACGACGGAGGATATTGTG
517664 CCCACACATCCACGGTTTCAACTTCACGATGAAGGAAATCGTACACACAAACAACATCCATCTCT
196 CCCACACATCCACGGTTTCAACTTCACGATGAAGGAAATCGTACACACAAACAACATCCATCTCT
517729 AGATTGGATTTCAACTTCACGACGAAGGATATCCAACTCAAAGAAGGAATGTCTATTAATAAACT
261 AGATTGGATTTCAACTTCACGACGAAGGATATCCAACTCAAAGAAGGAATGTCTATTAATAAACT
517794 TTCCAGCTTC
326 TTCCAGCTTC
517804 AGAGCCAATTTCAACTTCACGACGAAGGATATTGGACTCGAAACAACACAAGTTTGGATTTCAAC
1 AGAGCCAATTTCAACTTCACGACGAAGGATATTGGACTCGAAACAACACAAGTTTGGATTTCAAC
* * *
517869 TTCACGACGAAGGATATTCAAGTCAAGGCTCAACTTCACGACGAAGGGGCTATCCACGATTTCAA
66 TTCACGACGAAGGATATTCAAGTCAAGGCTCAACTTCACGACGAAGGGGCCATCTACAATTTCAA
* * *
517934 CTCCACGACGGAGGATATCGTACCAACGGATCCACGATTTCAACTCCACGAAGGAGGATAT
131 CTCCACGACGGAGGATATCATACAAACGGATCCACGATTTCAACTCCACGACGGAGGATAT
517995 CGTACTAACG
Statistics
Matches: 510, Mismatches: 15, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
334 84 0.16
335 426 0.84
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.23
Consensus pattern (335 bp):
AGAGCCAATTTCAACTTCACGACGAAGGATATTGGACTCGAAACAACACAAGTTTGGATTTCAAC
TTCACGACGAAGGATATTCAAGTCAAGGCTCAACTTCACGACGAAGGGGCCATCTACAATTTCAA
CTCCACGACGGAGGATATCATACAAACGGATCCACGATTTCAACTCCACGACGGAGGATATTGTG
CCCACACATCCACGGTTTCAACTTCACGATGAAGGAAATCGTACACACAAACAACATCCATCTCT
AGATTGGATTTCAACTTCACGACGAAGGATATCCAACTCAAAGAAGGAATGTCTATTAATAAACT
TTCCAGCTTC
Found at i:518083 original size:43 final size:43
Alignment explanation
Indices: 517920--518070 Score: 239
Period size: 43 Copynumber: 3.5 Consensus size: 43
517910 CGAAGGGGCT
517920 ATCCACGATTTCAACTCCACGACGGAGGATATCGTACCAACGG
1 ATCCACGATTTCAACTCCACGACGGAGGATATCGTACCAACGG
* *
517963 ATCCACGATTTCAACTCCACGAAGGAGGATATCGTACTAACGG
1 ATCCACGATTTCAACTCCACGACGGAGGATATCGTACCAACGG
* * **
518006 ATCCACGATTTCAACTCCACGACGGAGGATATCGTGCCCACAC
1 ATCCACGATTTCAACTCCACGACGGAGGATATCGTACCAACGG
*
518049 ATCCACGATTTCAACTTCACGA
1 ATCCACGATTTCAACTCCACGA
518071 TGAAAGGAAT
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 99 1.00
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (43 bp):
ATCCACGATTTCAACTCCACGACGGAGGATATCGTACCAACGG
Found at i:518346 original size:43 final size:43
Alignment explanation
Indices: 518298--518405 Score: 153
Period size: 43 Copynumber: 2.5 Consensus size: 43
518288 CGAAGGGGCT
**
518298 ATCCACGATTTCAACTCCACGACGGAGGATATCGTACCAACGG
1 ATCCACGATTTCAACTCCACGACGGAGGATATCGTACCAACAC
* * *
518341 ATCCACGATTTCAACTCCACGACGGAGGATATTGTGCCCACAC
1 ATCCACGATTTCAACTCCACGACGGAGGATATCGTACCAACAC
* *
518384 ATCCACGGTTTCAACTTCACGA
1 ATCCACGATTTCAACTCCACGA
518406 TGAAGGGAAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (43 bp):
ATCCACGATTTCAACTCCACGACGGAGGATATCGTACCAACAC
Found at i:518399 original size:378 final size:378
Alignment explanation
Indices: 517592--518372 Score: 1375
Period size: 378 Copynumber: 2.1 Consensus size: 378
517582 GCCATCTACA
*
517592 ATTTCAACTCCACGACGGAGGATATCATACAAACGGATCCACGATTTCAACTCCACGACGGAGGA
1 ATTTCAACTCCACGACGGAGGATATCGTACAAACGGATCCACGATTTCAACTCCACGACGGAGGA
* *
517657 TATTGTGCCCACACATCCACGGTTTCAACTTCACGATGAAGGAAATCGTACACACAAACAACATC
66 TATCGTGCCCACACATCCACGATTTCAACTTCACGATGAAGGAAATCGTACACACAAACAACATC
* *
517722 CATCTCTAGATTGGATTTCAACTTCACGACGAAGGATATCCAACTCAAAGAAGGAATGTCTATTA
131 AATCTCTAGATTGGATTTCAACTTCACGACGAAGGATATCCAACTCAAAGAAGGAATGTCTATCA
*
517787 ATAAACTTTCCAGCTTCAGAGCCAATTTCAACTTCACGACGAAGGATATTGGACTCGAAACAACA
196 ATAAACTTTCCAGCTTCAAAGCCAATTTCAACTTCACGACGAAGGATATTGGACTCGAAACAACA
*
517852 CAAGTTTGGATTTCAACTTCACGACGAAGGATATTCAAGTCAAGGCTCAACTTCACGACGAAGGG
261 CAAGCTTGGATTTCAACTTCACGACGAAGGATATTCAAGTCAAGGCTCAACTTCACGACGAAGGG
517917 GCTATCCACGATTTCAACTCCACGACGGAGGATATCGTACCAACGGATCCACG
326 GCTATCCACGATTTCAACTCCACGACGGAGGATATCGTACCAACGGATCCACG
* *
517970 ATTTCAACTCCACGAAGGAGGATATCGTACTAACGGATCCACGATTTCAACTCCACGACGGAGGA
1 ATTTCAACTCCACGACGGAGGATATCGTACAAACGGATCCACGATTTCAACTCCACGACGGAGGA
* *
518035 TATCGTGCCCACACATCCACGATTTCAACTTCACGATGAAAGG-AATCGTACACACAAGCAGCAT
66 TATCGTGCCCACACATCCACGATTTCAACTTCACGATG-AAGGAAATCGTACACACAAACAACAT
* * * * *
518099 CAATCTCTAGATTGGATTTCAACTTCATGACGAAGGATATCCAACTCAAAGAATGAGTGTTTGTC
130 CAATCTCTAGATTGGATTTCAACTTCACGACGAAGGATATCCAACTCAAAGAAGGAATGTCTATC
* *
518164 AATAAACTTTCCAGTTTCAAAGCCAATTTCAACTTCACGACGAATGATATTGGACTCGAAACAAC
195 AATAAACTTTCCAGCTTCAAAGCCAATTTCAACTTCACGACGAAGGATATTGGACTCGAAACAAC
*
518229 ACAAGCTTGGATTTTAACTTCACGACGAAGGATATTCAAGTCAAGGCTCAACTTCACGACGAAGG
260 ACAAGCTTGGATTTCAACTTCACGACGAAGGATATTCAAGTCAAGGCTCAACTTCACGACGAAGG
518294 GGCTATCCACGATTTCAACTCCACGACGGAGGATATCGTACCAACGGATCCACG
325 GGCTATCCACGATTTCAACTCCACGACGGAGGATATCGTACCAACGGATCCACG
518348 ATTTCAACTCCACGACGGAGGATAT
1 ATTTCAACTCCACGACGGAGGATAT
518373 TGTGCCCACA
Statistics
Matches: 382, Mismatches: 20, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
378 378 0.99
379 4 0.01
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (378 bp):
ATTTCAACTCCACGACGGAGGATATCGTACAAACGGATCCACGATTTCAACTCCACGACGGAGGA
TATCGTGCCCACACATCCACGATTTCAACTTCACGATGAAGGAAATCGTACACACAAACAACATC
AATCTCTAGATTGGATTTCAACTTCACGACGAAGGATATCCAACTCAAAGAAGGAATGTCTATCA
ATAAACTTTCCAGCTTCAAAGCCAATTTCAACTTCACGACGAAGGATATTGGACTCGAAACAACA
CAAGCTTGGATTTCAACTTCACGACGAAGGATATTCAAGTCAAGGCTCAACTTCACGACGAAGGG
GCTATCCACGATTTCAACTCCACGACGGAGGATATCGTACCAACGGATCCACG
Found at i:518573 original size:335 final size:335
Alignment explanation
Indices: 517963--518939 Score: 1639
Period size: 335 Copynumber: 2.9 Consensus size: 335
517953 GTACCAACGG
* *
517963 ATCCACGATTTCAACTCCACGAAGGAGGATATCGTACTAACGGATCCACGATTTCAACTCCACGA
1 ATCCACGATTTCAACTCCACGACGGAGGATATCGTACCAACGGATCCACGATTTCAACTCCACGA
*
518028 CGGAGGATATCGTGCCCACACATCCACGATTTCAACTTCACGATGAAAGGAATCGTACACACAAG
66 CGGAGGATATCGTGCCCACACATCCACGATTTCAACTTCACGATGAAGGGAATCGTACACACAAG
*
518093 CAGCATCAATCTCTAGATTGGATTTCAACTTCATGACGAAGGATATCCAACTCAAAGAATGAGTG
131 CAGCATCAATCTCTAGATTGGATTTCAACTTCAAGACGAAGGATATCCAACTCAAAGAATGAGTG
* * *
518158 TTTGTCAATAAACTTTCCAGTTTCAAAGCCAATTTCAACTTCACGACGAATGATATTGGACTCGA
196 TATGTCAATAAACTTTCCAGTTTCAGAGCCAATTTCAACTTCACGACGAAGGATATTGGACTCGA
*
518223 AACAACACAAGCTTGGATTTTAACTTCACGACGAAGGATATTCAAGTCAAGGCTCAACTTCACGA
261 AACAACACAAGCTTGGATTTCAACTTCACGACGAAGGATATTCAAGTCAAGGCTCAACTTCACGA
*
518288 CGAAGGGGCT
326 CGAAGGGGCC
518298 ATCCACGATTTCAACTCCACGACGGAGGATATCGTACCAACGGATCCACGATTTCAACTCCACGA
1 ATCCACGATTTCAACTCCACGACGGAGGATATCGTACCAACGGATCCACGATTTCAACTCCACGA
* * *
518363 CGGAGGATATTGTGCCCACACATCCACGGTTTCAACTTCACGATGAAGGGAATCGTACACACAAA
66 CGGAGGATATCGTGCCCACACATCCACGATTTCAACTTCACGATGAAGGGAATCGTACACACAAG
* * * *
518428 CAACATCCATCTCTAGATTGGATTTCAAATTCACGACGAAGGATATCCAACTCAAAGAATGAGTG
131 CAGCATCAATCTCTAGATTGGATTTCAACTTCAAGACGAAGGATATCCAACTCAAAGAATGAGTG
*
518493 TATGTCAATAAACTTTCCAGTTTCAGAGCCAGTTTCAACTTCACGACGAAGGATATTGGACTCGA
196 TATGTCAATAAACTTTCCAGTTTCAGAGCCAATTTCAACTTCACGACGAAGGATATTGGACTCGA
*
518558 AATAACACAAGCTTGGATTTCAACTTCACGACGAAGGATATTCAAGTCAAGGCTCAACTTCACGA
261 AACAACACAAGCTTGGATTTCAACTTCACGACGAAGGATATTCAAGTCAAGGCTCAACTTCACGA
518623 CGAAGGGGCC
326 CGAAGGGGCC
* * *
518633 ATCCACGATTTCAACTCCACGACGGAGGATATCATTCCAACGAATCCACGATTTCAACTCCACGA
1 ATCCACGATTTCAACTCCACGACGGAGGATATCGTACCAACGGATCCACGATTTCAACTCCACGA
* *
518698 CGGAGGATATCGTGCCCACACATCCACGATTTCAACTTCATGACGAAGGGAATCGTACACACAAG
66 CGGAGGATATCGTGCCCACACATCCACGATTTCAACTTCACGATGAAGGGAATCGTACACACAAG
* * * * * *
518763 CAGTATCAATCTCTAGATTGGATTTTAACTTCAAGATGAAGGATATCCAATTCAAATAAGGAGTG
131 CAGCATCAATCTCTAGATTGGATTTCAACTTCAAGACGAAGGATATCCAACTCAAAGAATGAGTG
* * * * *
518828 TCTGTCAATAAACTTTCCAATTTTAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCAA
196 TATGTCAATAAACTTTCCAGTTTCAGAGCCAATTTCAACTTCACGACGAAGGATATTGGACTCGA
*
518893 AACAACACAAGCTTGGATTTCAACTTCATGACGAAGGATATTCAAGT
261 AACAACACAAGCTTGGATTTCAACTTCACGACGAAGGATATTCAAGT
518940 TAAGCCTTCA
Statistics
Matches: 599, Mismatches: 43, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
335 599 1.00
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (335 bp):
ATCCACGATTTCAACTCCACGACGGAGGATATCGTACCAACGGATCCACGATTTCAACTCCACGA
CGGAGGATATCGTGCCCACACATCCACGATTTCAACTTCACGATGAAGGGAATCGTACACACAAG
CAGCATCAATCTCTAGATTGGATTTCAACTTCAAGACGAAGGATATCCAACTCAAAGAATGAGTG
TATGTCAATAAACTTTCCAGTTTCAGAGCCAATTTCAACTTCACGACGAAGGATATTGGACTCGA
AACAACACAAGCTTGGATTTCAACTTCACGACGAAGGATATTCAAGTCAAGGCTCAACTTCACGA
CGAAGGGGCC
Found at i:518622 original size:713 final size:713
Alignment explanation
Indices: 517257--518734 Score: 2517
Period size: 713 Copynumber: 2.1 Consensus size: 713
517247 GCCATCTACA
* * *
517257 ATTTCAATTCCACGATGGAGGATATCATACAAACGGATCCACGATTTCAACTCCACGACGGAGGA
1 ATTTCAACTCCACGAAGGAGGATATCGTACAAACGGATCCACGATTTCAACTCCACGACGGAGGA
* * *
517322 TATTGTGCCCACACATCCACGGTTTCAATTTCACGATGAAGGAAATCGTACACACAAACAACATC
66 TATCGTGCCCACACATCCACGATTTCAACTTCACGATGAAGGAAATCGTACACACAAACAACATC
* *
517387 CATCTCTAGATTGGATTTCAACTTCACGACGAAGGATATCCAACTCAAAGAAGGAATGTCTATTA
131 AATCTCTAGATTGGATTTCAACTTCACGACGAAGGATATCCAACTCAAAGAAGGAATGTCTATCA
*
517452 ATAAACTTTCCAGCTTCAGAGCCAATTTCAACTTCACGACGAAGGATATTGGACTCGAAACAACA
196 ATAAACTTTCCAGCTTCAAAGCCAATTTCAACTTCACGACGAAGGATATTGGACTCGAAACAACA
*
517517 CAAGTTTGGATTTCAACTTCACGACGAAGGATATTCAAGTCAAGGCTCAACTTCACGACGAAGGG
261 CAAGCTTGGATTTCAACTTCACGACGAAGGATATTCAAGTCAAGGCTCAACTTCACGACGAAGGG
*
517582 GCCATCTACAATTTCAACTCCACGACGGAGGATATCATACAAACGGATCCACGATTTCAACTCCA
326 GCCATCCACAATTTCAACTCCACGACGGAGGATATCATACAAACGGATCCACGATTTCAACTCCA
517647 CGACGGAGGATATTGTGCCCACACATCCACGGTTTCAACTTCACGATGAAGGAAATCGTACACAC
391 CGACGGAGGATATTGTGCCCACACATCCACGGTTTCAACTTCACGATGAAGGAAATCGTACACAC
*
517712 AAACAACATCCATCTCTAGATTGGATTTCAACTTCACGACGAAGGATATCCAACTCAAAGAAGGA
456 AAACAACATCCATCTCTAGATTGGATTTCAAATTCACGACGAAGGATATCCAACTCAAAGAAGGA
* *
517777 ATGTCTATTAATAAACTTTCCAGCTTCAGAGCCAATTTCAACTTCACGACGAAGGATATTGGACT
521 ATGTATATCAATAAACTTTCCAGCTTCAGAGCCAATTTCAACTTCACGACGAAGGATATTGGACT
*
517842 CGAAACAACACAAGTTTGGATTTCAACTTCACGACGAAGGATATTCAAGTCAAGGCTCAACTTCA
586 CGAAACAACACAAGCTTGGATTTCAACTTCACGACGAAGGATATTCAAGTCAAGGCTCAACTTCA
* * *
517907 CGACGAAGGGGCTATCCACGATTTCAACTCCACGACGGAGGATATCGTACCAACGGATCCACG
651 CGACGAAGGGGCCATCCACGATTTCAACTCCACGACGGAGGATATCATACCAACGAATCCACG
*
517970 ATTTCAACTCCACGAAGGAGGATATCGTACTAACGGATCCACGATTTCAACTCCACGACGGAGGA
1 ATTTCAACTCCACGAAGGAGGATATCGTACAAACGGATCCACGATTTCAACTCCACGACGGAGGA
* *
518035 TATCGTGCCCACACATCCACGATTTCAACTTCACGATGAAAGG-AATCGTACACACAAGCAGCAT
66 TATCGTGCCCACACATCCACGATTTCAACTTCACGATG-AAGGAAATCGTACACACAAACAACAT
* * * * *
518099 CAATCTCTAGATTGGATTTCAACTTCATGACGAAGGATATCCAACTCAAAGAATGAGTGTTTGTC
130 CAATCTCTAGATTGGATTTCAACTTCACGACGAAGGATATCCAACTCAAAGAAGGAATGTCTATC
* *
518164 AATAAACTTTCCAGTTTCAAAGCCAATTTCAACTTCACGACGAATGATATTGGACTCGAAACAAC
195 AATAAACTTTCCAGCTTCAAAGCCAATTTCAACTTCACGACGAAGGATATTGGACTCGAAACAAC
*
518229 ACAAGCTTGGATTTTAACTTCACGACGAAGGATATTCAAGTCAAGGCTCAACTTCACGACGAAGG
260 ACAAGCTTGGATTTCAACTTCACGACGAAGGATATTCAAGTCAAGGCTCAACTTCACGACGAAGG
* * * *
518294 GGCTATCCACGATTTCAACTCCACGACGGAGGATATCGTACCAACGGATCCACGATTTCAACTCC
325 GGCCATCCACAATTTCAACTCCACGACGGAGGATATCATACAAACGGATCCACGATTTCAACTCC
*
518359 ACGACGGAGGATATTGTGCCCACACATCCACGGTTTCAACTTCACGATGAAGGGAATCGTACACA
390 ACGACGGAGGATATTGTGCCCACACATCCACGGTTTCAACTTCACGATGAAGGAAATCGTACACA
*
518424 CAAACAACATCCATCTCTAGATTGGATTTCAAATTCACGACGAAGGATATCCAACTCAAAGAATG
455 CAAACAACATCCATCTCTAGATTGGATTTCAAATTCACGACGAAGGATATCCAACTCAAAGAAGG
* * * *
518489 AGTGTATGTCAATAAACTTTCCAGTTTCAGAGCCAGTTTCAACTTCACGACGAAGGATATTGGAC
520 AATGTATATCAATAAACTTTCCAGCTTCAGAGCCAATTTCAACTTCACGACGAAGGATATTGGAC
*
518554 TCGAAATAACACAAGCTTGGATTTCAACTTCACGACGAAGGATATTCAAGTCAAGGCTCAACTTC
585 TCGAAACAACACAAGCTTGGATTTCAACTTCACGACGAAGGATATTCAAGTCAAGGCTCAACTTC
*
518619 ACGACGAAGGGGCCATCCACGATTTCAACTCCACGACGGAGGATATCATTCCAACGAATCCACG
650 ACGACGAAGGGGCCATCCACGATTTCAACTCCACGACGGAGGATATCATACCAACGAATCCACG
* * ** **
518683 ATTTCAACTCCACGACGGAGGATATCGTGCCCACACATCCACGATTTCAACT
1 ATTTCAACTCCACGAAGGAGGATATCGTACAAACGGATCCACGATTTCAACT
518735 TCATGACGAA
Statistics
Matches: 717, Mismatches: 47, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
713 713 0.99
714 4 0.01
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (713 bp):
ATTTCAACTCCACGAAGGAGGATATCGTACAAACGGATCCACGATTTCAACTCCACGACGGAGGA
TATCGTGCCCACACATCCACGATTTCAACTTCACGATGAAGGAAATCGTACACACAAACAACATC
AATCTCTAGATTGGATTTCAACTTCACGACGAAGGATATCCAACTCAAAGAAGGAATGTCTATCA
ATAAACTTTCCAGCTTCAAAGCCAATTTCAACTTCACGACGAAGGATATTGGACTCGAAACAACA
CAAGCTTGGATTTCAACTTCACGACGAAGGATATTCAAGTCAAGGCTCAACTTCACGACGAAGGG
GCCATCCACAATTTCAACTCCACGACGGAGGATATCATACAAACGGATCCACGATTTCAACTCCA
CGACGGAGGATATTGTGCCCACACATCCACGGTTTCAACTTCACGATGAAGGAAATCGTACACAC
AAACAACATCCATCTCTAGATTGGATTTCAAATTCACGACGAAGGATATCCAACTCAAAGAAGGA
ATGTATATCAATAAACTTTCCAGCTTCAGAGCCAATTTCAACTTCACGACGAAGGATATTGGACT
CGAAACAACACAAGCTTGGATTTCAACTTCACGACGAAGGATATTCAAGTCAAGGCTCAACTTCA
CGACGAAGGGGCCATCCACGATTTCAACTCCACGACGGAGGATATCATACCAACGAATCCACG
Found at i:518753 original size:43 final size:44
Alignment explanation
Indices: 518632--518734 Score: 165
Period size: 43 Copynumber: 2.4 Consensus size: 44
518622 ACGAAGGGGC
* *
518632 CATCCACGATTTCAACTCCACGACGGAGGATATCATTCCAACGA
1 CATCCACGATTTCAACTCCACGACGGAGGATATCGTGCCAACGA
*
518676 -ATCCACGATTTCAACTCCACGACGGAGGATATCGTGCCCAC-A
1 CATCCACGATTTCAACTCCACGACGGAGGATATCGTGCCAACGA
518718 CATCCACGATTTCAACT
1 CATCCACGATTTCAACT
518735 TCATGACGAA
Statistics
Matches: 55, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
42 1 0.02
43 54 0.98
ACGTcount: A:0.30, C:0.33, G:0.16, T:0.21
Consensus pattern (44 bp):
CATCCACGATTTCAACTCCACGACGGAGGATATCGTGCCAACGA
Found at i:519028 original size:42 final size:42
Alignment explanation
Indices: 518967--519175 Score: 265
Period size: 42 Copynumber: 5.0 Consensus size: 42
518957 GAAATAAGTC
* *
518967 CATCAGTAAGTCTTCCGAGCATGATGCTTAAATCCTTTGGGT
1 CATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGT
* *
519009 CATCAATAAGTCTTTCGAGCATGATGTTTAAATCCTTCGGGT
1 CATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGT
* * * *
519051 CGTCTGTAAGCCTTTCGAGCATGAGGCTTAAATCCTTCGGGT
1 CATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGT
* * *
519093 CATCAGTAAGTCTTCCGAGCATGATGCTTAAATCATTCAGGT
1 CATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGT
* * * * * *
519135 CATCAGTAAGCCTTTCAAGCATAATGATTAAGTCCTCCGGG
1 CATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGG
519176 CAATCTAAAA
Statistics
Matches: 141, Mismatches: 26, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 141 1.00
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (42 bp):
CATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGT
Found at i:519343 original size:116 final size:116
Alignment explanation
Indices: 519135--519345 Score: 309
Period size: 116 Copynumber: 1.8 Consensus size: 116
519125 TCATTCAGGT
*
519135 CATCAGTAAGCCTTTCAAGCATAATGATTAAGTCCTCCGGGCAATCTAAAACCTTCATCAAAGAG
1 CATCAGTAAGCCTTTCAAGCATAATGATTAAGTCCTCCGGGCAATCTAAAACCTTCACCAAAGAG
519200 TAGTGAAACAAATCAATCTTAAGCCTTCACTGAAGAGTAGTGAAGCATCTC
66 TAGTGAAACAAATCAATCTTAAGCCTTCACTGAAGAGTAGTGAAGCATCTC
* * * * * * *
519251 CATCAGTAAGTCTTTCGAGCATGATGATTAAGTCCTCCGGGTC-ATTTTAAGCCTTCGCCAAAGA
1 CATCAGTAAGCCTTTCAAGCATAATGATTAAGTCCTCCGGG-CAATCTAAAACCTTCACCAAAGA
*
519315 GTAGT-AAAGCAAATCAATCTTAATCCTTCAC
65 GTAGTGAAA-CAAATCAATCTTAAGCCTTCAC
519346 AAAATAGTGA
Statistics
Matches: 84, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
115 3 0.04
116 80 0.95
117 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.27
Consensus pattern (116 bp):
CATCAGTAAGCCTTTCAAGCATAATGATTAAGTCCTCCGGGCAATCTAAAACCTTCACCAAAGAG
TAGTGAAACAAATCAATCTTAAGCCTTCACTGAAGAGTAGTGAAGCATCTC
Found at i:519563 original size:113 final size:113
Alignment explanation
Indices: 519365--519737 Score: 692
Period size: 113 Copynumber: 3.3 Consensus size: 113
519355 AAGCAAATCC
519365 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCTGCTTCGATTCAATGGATCAACTCCCCC
1 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCTGCTTCGATTCAATGGATCAACTCCCCC
519430 AGATCTGATATTCCCTTCGGAGTAAGTGGAACAAGTCTCTCTTCTTCA
66 AGATCTGATATTCCCTTCGGAGTAAGTGGAACAAGTCTCTCTTCTTCA
*
519478 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCTGATTCGATTCAATGGATCAACTCCCCC
1 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCTGCTTCGATTCAATGGATCAACTCCCCC
* *
519543 AGATCTGATATTCCCTTCGGAGTAAGTGCAACATGTCTCTCTTCTTCA
66 AGATCTGATATTCCCTTCGGAGTAAGTGGAACAAGTCTCTCTTCTTCA
*
519591 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCTTCTTCGATTCAATGGATCAACTCCCCC
1 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCTGCTTCGATTCAATGGATCAACTCCCCC
519656 AGATCTGATATTCCCTTCGGAGTAAGTGGAACAAGTCTCTCTTCTTCA
66 AGATCTGATATTCCCTTCGGAGTAAGTGGAACAAGTCTCTCTTCTTCA
* *
519704 AGGTTTGATATTCCCTTCAGAGTAAGCGGAACAA
1 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAA
519738 ATCTCTCTTC
Statistics
Matches: 251, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
113 251 1.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (113 bp):
AGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCTGCTTCGATTCAATGGATCAACTCCCCC
AGATCTGATATTCCCTTCGGAGTAAGTGGAACAAGTCTCTCTTCTTCA
Found at i:519735 original size:48 final size:48
Alignment explanation
Indices: 519656--519884 Score: 245
Period size: 48 Copynumber: 4.8 Consensus size: 48
519646 CAACTCCCCC
* * *
519656 AGATCTGATATTCCCTTCGGAGTAAGTGGAACAAGTCTCTCTTCTTCA
1 AGATTTGATATTCCCTTCAGAGTAAGCGGAACAAGTCTCTCTTCTTCA
* *
519704 AGGTTTGATATTCCCTTCAGAGTAAGCGGAACAAATCTCTCTTC-TCTA
1 AGATTTGATATTCCCTTCAGAGTAAGCGGAACAAGTCTCTCTTCTTC-A
* * *
519752 AGATTTGATATTCCCTTCGGAGTAAGCGGAACAAGTATTTCTTCTTCA
1 AGATTTGATATTCCCTTCAGAGTAAGCGGAACAAGTCTCTCTTCTTCA
* * * * * *
519800 AGATTTGATATACCCTTCAGCA-AAAGTGGAACAAATCCCTC-TCATACA
1 AGATTTGATATTCCCTTCAG-AGTAAGCGGAACAAGTCTCTCTTC-TTCA
519848 AGATTTGATATTCCC-T--GAGTGACAGCGGAACAAGTCT
1 AGATTTGATATTCCCTTCAGAGT-A-AGCGGAACAAGTCT
519885 ACCCATATTC
Statistics
Matches: 150, Mismatches: 24, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 1 0.01
47 16 0.11
48 128 0.85
49 3 0.02
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (48 bp):
AGATTTGATATTCCCTTCAGAGTAAGCGGAACAAGTCTCTCTTCTTCA
Found at i:519831 original size:96 final size:96
Alignment explanation
Indices: 519656--519863 Score: 287
Period size: 96 Copynumber: 2.2 Consensus size: 96
519646 CAACTCCCCC
* * * * *
519656 AGATCTGATATTCCCTTCGGAGTAAGTGGAACAAGTCTCTCTTCTTCAAGGTTTGATATTCCCTT
1 AGATTTGATATTCCCTTCGGAGTAAGCGGAACAAGTATCTCTTCTTCAAGATTTGATATACCCTT
* *
519721 CAGAGTAAGCGGAACAAATCTCTCTTC-T-CTA
66 CAGAGAAAGCGGAACAAATCCCTC-TCATAC-A
*
519752 AGATTTGATATTCCCTTCGGAGTAAGCGGAACAAGTATTTCTTCTTCAAGATTTGATATACCCTT
1 AGATTTGATATTCCCTTCGGAGTAAGCGGAACAAGTATCTCTTCTTCAAGATTTGATATACCCTT
*
519817 CAGCA-AAAGTGGAACAAATCCCTCTCATACA
66 CAG-AGAAAGCGGAACAAATCCCTCTCATACA
519848 AGATTTGATATTCCCT
1 AGATTTGATATTCCCT
519864 GAGTGACAGC
Statistics
Matches: 100, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
95 2 0.02
96 96 0.96
97 2 0.02
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (96 bp):
AGATTTGATATTCCCTTCGGAGTAAGCGGAACAAGTATCTCTTCTTCAAGATTTGATATACCCTT
CAGAGAAAGCGGAACAAATCCCTCTCATACA
Found at i:525823 original size:37 final size:36
Alignment explanation
Indices: 525724--525832 Score: 184
Period size: 35 Copynumber: 3.0 Consensus size: 36
525714 TGGCAACCAA
525724 CTTTGAAAAAGTGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAA-TGGTTTTCAAAGTTTGGTAAATGTTT
525761 CTTTG-AAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
*
525796 CTTTGAAAAATGGTTTTTCAAAGTTTGGTAGATGTTT
1 CTTTGAAAAATGG-TTTTCAAAGTTTGGTAAATGTTT
525833 GTTGAAATAT
Statistics
Matches: 69, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
35 31 0.45
36 11 0.16
37 27 0.39
ACGTcount: A:0.28, C:0.06, G:0.21, T:0.45
Consensus pattern (36 bp):
CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
Found at i:529612 original size:22 final size:22
Alignment explanation
Indices: 529576--529635 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
529566 CATTTAGGTT
*
529576 TTTAATTAATTTATAA-TTATACA
1 TTTAA-TATTTTATAATTTATA-A
529599 TTTAATATTTTATAATTTATAA
1 TTTAATATTTTATAATTTATAA
**
529621 TTTAACGTTTTATAA
1 TTTAATATTTTATAA
529636 ATTAATTTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
22 23 0.70
23 10 0.30
ACGTcount: A:0.40, C:0.03, G:0.02, T:0.55
Consensus pattern (22 bp):
TTTAATATTTTATAATTTATAA
Found at i:529617 original size:7 final size:7
Alignment explanation
Indices: 529582--529624 Score: 52
Period size: 7 Copynumber: 6.0 Consensus size: 7
529572 GGTTTTTAAT
529582 TAATTTA
1 TAATTTA
529589 TAA-TTA
1 TAATTTA
529595 TACATTTAA
1 TA-ATTT-A
*
529604 TATTTTA
1 TAATTTA
529611 TAATTTA
1 TAATTTA
529618 TAATTTA
1 TAATTTA
529625 ACGTTTTATA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
6 5 0.16
7 18 0.58
8 5 0.16
9 3 0.10
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (7 bp):
TAATTTA
Found at i:531832 original size:11 final size:11
Alignment explanation
Indices: 531796--531833 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
531786 TTAAAAATAT
531796 TAAATTATAAAA
1 TAAATTA-AAAA
531808 TAAA-TAAAAA
1 TAAATTAAAAA
*
531818 TAAATTAAAAT
1 TAAATTAAAAA
531829 TAAAT
1 TAAAT
531834 AAATAATCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
10 8 0.33
11 12 0.50
12 4 0.17
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
TAAATTAAAAA
Found at i:531862 original size:11 final size:11
Alignment explanation
Indices: 531846--531886 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
531836 ATAATCATCT
531846 TAATTTTTTTG
1 TAATTTTTTTG
531857 TAA-TTTTTTG
1 TAATTTTTTTG
* *
531867 GATTTTTTTTG
1 TAATTTTTTTG
531878 TAATTTTTT
1 TAATTTTTT
531887 CTGATTTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
10 8 0.32
11 17 0.68
ACGTcount: A:0.17, C:0.00, G:0.10, T:0.73
Consensus pattern (11 bp):
TAATTTTTTTG
Found at i:531875 original size:21 final size:22
Alignment explanation
Indices: 531849--531897 Score: 82
Period size: 21 Copynumber: 2.3 Consensus size: 22
531839 ATCATCTTAA
531849 TTTTTTTGTAATTTTTT-GGAT
1 TTTTTTTGTAATTTTTTCGGAT
*
531870 TTTTTTTGTAATTTTTTCTGAT
1 TTTTTTTGTAATTTTTTCGGAT
531892 TTTTTT
1 TTTTTT
531898 ATATTTGTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 17 0.65
22 9 0.35
ACGTcount: A:0.12, C:0.02, G:0.10, T:0.76
Consensus pattern (22 bp):
TTTTTTTGTAATTTTTTCGGAT
Found at i:532365 original size:7 final size:7
Alignment explanation
Indices: 532353--532387 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
532343 TCGTAGTTTA
532353 TTAGGGT
1 TTAGGGT
532360 TTAGGGT
1 TTAGGGT
532367 TTAGGGT
1 TTAGGGT
532374 TTAGGGT
1 TTAGGGT
532381 TTAGGGT
1 TTAGGGT
532388 ATTTACATGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.14, C:0.00, G:0.43, T:0.43
Consensus pattern (7 bp):
TTAGGGT
Found at i:534047 original size:15 final size:15
Alignment explanation
Indices: 534024--534059 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
534014 TAATTATATG
*
534024 TTTAGTATTTTATAA
1 TTTAATATTTTATAA
534039 TTTAATATTTTATAA
1 TTTAATATTTTATAA
*
534054 ATTAAT
1 TTTAAT
534060 TTAATAAGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (15 bp):
TTTAATATTTTATAA
Found at i:534497 original size:21 final size:21
Alignment explanation
Indices: 534473--534514 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
534463 AAATTAAAAC
*
534473 AAAATTTTCATGATTTATTTT
1 AAAATTTTCATGATTCATTTT
534494 AAAATTTTCATGATTCATTTT
1 AAAATTTTCATGATTCATTTT
534515 TCATGTTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (21 bp):
AAAATTTTCATGATTCATTTT
Found at i:536051 original size:93 final size:93
Alignment explanation
Indices: 535887--536055 Score: 218
Period size: 93 Copynumber: 1.8 Consensus size: 93
535877 CCTTAAGTTA
* * * * **
535887 GGCAGCTTCTCTAGTGTTGGCATTGGATCTTCCTAAAGCTCGCATTCTTTCAAGCTTATGTAAGC
1 GGCAACTTCTCTAGTGTTGGCATTGGATCTTCCTAAAGATAGCATACTGCCAAGCTTATGTAAGC
535952 GAGATTTGAAGACAAGTAGCGGTGCTCT
66 GAGATTTGAAGACAAGTAGCGGTGCTCT
* *
535980 GGCAACTTCTCTAGTGTTGGCATTGGATCTTCCTGAAGATAGTA-ACGTGCCAAG-TATATGTAA
1 GGCAACTTCTCTAGTGTTGGCATTGGATCTTCCTAAAGATAGCATAC-TGCCAAGCT-TATGTAA
536043 G-GAAGATTTGAAG
64 GCG-AGATTTGAAG
536056 GCAAATGCTC
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
92 3 0.05
93 62 0.95
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (93 bp):
GGCAACTTCTCTAGTGTTGGCATTGGATCTTCCTAAAGATAGCATACTGCCAAGCTTATGTAAGC
GAGATTTGAAGACAAGTAGCGGTGCTCT
Found at i:537523 original size:60 final size:60
Alignment explanation
Indices: 537431--537571 Score: 201
Period size: 60 Copynumber: 2.4 Consensus size: 60
537421 TCTTTTTCTT
* * *
537431 ATCAACTGTATCATCAGCACATTGTTTACCCTTGTCTTGTCCCAACTCCTTTATCTCACC
1 ATCAACCGTATCATCTGCACATCGTTTACCCTTGTCTTGTCCCAACTCCTTTATCTCACC
* * *
537491 ATCAACCGTATCATCTGCACGTCGTTTGCCCTTGTCTTGTCTCAACTCCTTTATCTCACC
1 ATCAACCGTATCATCTGCACATCGTTTACCCTTGTCTTGTCCCAACTCCTTTATCTCACC
* * *
537551 ATAAACCGTTTTATCTGCACA
1 ATCAACCGTATCATCTGCACA
537572 ATATGAAGGG
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
60 71 1.00
ACGTcount: A:0.21, C:0.33, G:0.10, T:0.36
Consensus pattern (60 bp):
ATCAACCGTATCATCTGCACATCGTTTACCCTTGTCTTGTCCCAACTCCTTTATCTCACC
Found at i:542211 original size:35 final size:35
Alignment explanation
Indices: 542165--542240 Score: 109
Period size: 35 Copynumber: 2.2 Consensus size: 35
542155 AAAACAGTCA
* *
542165 TCAATTTCATTCTAAATCAC-AATTTCCAAAGTAAT
1 TCAATTTCATTCTAAA-CACTAAATTCCAAAATAAT
*
542200 TCAATTTCATTCTAAACCCTAAATTCCAAAATAAT
1 TCAATTTCATTCTAAACACTAAATTCCAAAATAAT
542235 TCAATT
1 TCAATT
542241 AAATTCAATT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
34 2 0.05
35 35 0.95
ACGTcount: A:0.41, C:0.21, G:0.01, T:0.37
Consensus pattern (35 bp):
TCAATTTCATTCTAAACACTAAATTCCAAAATAAT
Found at i:542774 original size:130 final size:128
Alignment explanation
Indices: 542633--542878 Score: 411
Period size: 130 Copynumber: 1.9 Consensus size: 128
542623 TATTTATATA
* **
542633 ATCAATTTGGTCCTAAATTAAATAGAATTTAATAAATTAATCATTTAATTAGGATCTGACATGTG
1 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTG
* *
542698 TTAGCACATGATCATGACACGTGTCATTGGTGACACATGTCACCGCCTAATTATTTATATATGCT
66 TTAACACATGATCATG--ACGTGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
542763 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTG
1 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTG
* *
542828 TTAACACATGATCATGATGTGTTATTGGTGACACATGTCACCACCTAATTA
66 TTAACACATGATCATGACGTGTCATTGGTGACACATGTCACCACCTAATTA
542879 GAAGAAAATT
Statistics
Matches: 109, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
128 32 0.29
130 77 0.71
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.35
Consensus pattern (128 bp):
ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTG
TTAACACATGATCATGACGTGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
Found at i:543361 original size:15 final size:17
Alignment explanation
Indices: 543336--543367 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
543326 ATTTCTTATT
543336 AAAAATAAAAT-ATTCA
1 AAAAATAAAATGATTCA
543352 AAAAAT-AAATGATTCA
1 AAAAATAAAATGATTCA
543368 TACATTAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.66, C:0.06, G:0.03, T:0.25
Consensus pattern (17 bp):
AAAAATAAAATGATTCA
Found at i:546144 original size:46 final size:46
Alignment explanation
Indices: 546035--546171 Score: 132
Period size: 46 Copynumber: 3.0 Consensus size: 46
546025 CGAACAACCG
* * ** *
546035 AAATACAAGTTAGTGCATCCTTACGGGATGATAAATCCAATTACTA
1 AAATACAGGCTAGTGCATCCTTACCAGATGATAAATCCAATTACCA
* *
546081 AAATACAGGCTAATGCATCCTTACCAGATGATAAATCCAATTACCG
1 AAATACAGGCTAGTGCATCCTTACCAGATGATAAATCCAATTACCA
** * * * * *
546127 ATTTGCAGGCTGGTGCATCTTTAGCAGATGGT-AATCCCAATTACC
1 AAATACAGGCTAGTGCATCCTTACCAGATGATAAAT-CCAATTACC
546172 TTATTATAGT
Statistics
Matches: 75, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
45 3 0.04
46 72 0.96
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (46 bp):
AAATACAGGCTAGTGCATCCTTACCAGATGATAAATCCAATTACCA
Found at i:548453 original size:24 final size:24
Alignment explanation
Indices: 548426--548513 Score: 90
Period size: 24 Copynumber: 3.7 Consensus size: 24
548416 GAAATTAGAA
*
548426 ATCAAAACAGAATTCAGAACATAT
1 ATCAGAACAGAATTCAGAACATAT
* *
548450 ATCAGAACAGAATCCA-AATCATAA
1 ATCAGAACAGAATTCAGAA-CATAT
* * *
548474 ATCAGAACAGAATTTATG-TCATGT
1 ATCAGAACAGAATTCA-GAACATAT
548498 ATCAGAACAGAATTCA
1 ATCAGAACAGAATTCA
548514 AGTCGGAAAT
Statistics
Matches: 52, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
23 2 0.04
24 50 0.96
ACGTcount: A:0.49, C:0.17, G:0.11, T:0.23
Consensus pattern (24 bp):
ATCAGAACAGAATTCAGAACATAT
Found at i:548524 original size:48 final size:48
Alignment explanation
Indices: 548417--548527 Score: 125
Period size: 48 Copynumber: 2.3 Consensus size: 48
548407 TTAAACGGAG
* *
548417 AAATTAGAAATCAAAACAGAATTCAGAACATATATCAGAACAGAATCC
1 AAATCAGAAATCAGAACAGAATTCAGAACATATATCAGAACAGAATCC
* * * * *
548465 AAATCATAAATCAGAACAGAATTTATG-TCATGTATCAGAACAGAATTC
1 AAATCAGAAATCAGAACAGAATTCA-GAACATATATCAGAACAGAATCC
* *
548513 AAGTCGGAAATCAGA
1 AAATCAGAAATCAGA
548528 TAAAATATTT
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
48 51 0.98
49 1 0.02
ACGTcount: A:0.50, C:0.15, G:0.14, T:0.22
Consensus pattern (48 bp):
AAATCAGAAATCAGAACAGAATTCAGAACATATATCAGAACAGAATCC
Found at i:548525 original size:24 final size:24
Alignment explanation
Indices: 548422--548527 Score: 81
Period size: 24 Copynumber: 4.4 Consensus size: 24
548412 CGGAGAAATT
* *
548422 AGAAATCAAAACAGAATTC-AGAAC
1 AGAAATCAGAACAGAATTCAAG-TC
* * * *
548446 ATATATCAGAACAGAATCCAAATC
1 AGAAATCAGAACAGAATTCAAGTC
* * *
548470 ATAAATCAGAACAGAATTTATGTC
1 AGAAATCAGAACAGAATTCAAGTC
*
548494 ATG-TATCAGAACAGAATTCAAGTC
1 A-GAAATCAGAACAGAATTCAAGTC
*
548518 GGAAATCAGA
1 AGAAATCAGA
548528 TAAAATATTT
Statistics
Matches: 62, Mismatches: 17, Indels: 6
0.73 0.20 0.07
Matches are distributed among these distances:
23 1 0.02
24 60 0.97
25 1 0.02
ACGTcount: A:0.49, C:0.16, G:0.14, T:0.21
Consensus pattern (24 bp):
AGAAATCAGAACAGAATTCAAGTC
Found at i:550865 original size:27 final size:27
Alignment explanation
Indices: 550813--550875 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
550803 TCAAAGTTCT
*
550813 GGTCAACAGTGGTCAAAACCTATCAAC
1 GGTCAACAGTGGTCAAAACCGATCAAC
* ** *
550840 GGTTAACAGTGGTCAACGCCGGTCAAC
1 GGTCAACAGTGGTCAAAACCGATCAAC
550867 GGTCAACAG
1 GGTCAACAG
550876 ACCATTTTAC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.32, C:0.25, G:0.25, T:0.17
Consensus pattern (27 bp):
GGTCAACAGTGGTCAAAACCGATCAAC
Found at i:556272 original size:7 final size:7
Alignment explanation
Indices: 556257--556338 Score: 146
Period size: 7 Copynumber: 11.6 Consensus size: 7
556247 TCACTAGGAG
556257 TTCCTTCC
1 TTCC-TCC
*
556265 TTCTTCC
1 TTCCTCC
556272 TTCCTCC
1 TTCCTCC
556279 TTCCTCC
1 TTCCTCC
556286 TTCCTCC
1 TTCCTCC
556293 TTCCTCC
1 TTCCTCC
556300 TTCCTCC
1 TTCCTCC
556307 TTCCTCC
1 TTCCTCC
556314 TTCCTCC
1 TTCCTCC
556321 TTCCTCC
1 TTCCTCC
556328 TTCCTCC
1 TTCCTCC
556335 TTCC
1 TTCC
556339 ATTTAGGTAG
Statistics
Matches: 72, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
7 69 0.96
8 3 0.04
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (7 bp):
TTCCTCC
Found at i:559943 original size:60 final size:60
Alignment explanation
Indices: 559878--560117 Score: 295
Period size: 60 Copynumber: 4.0 Consensus size: 60
559868 TCTTTTTTCT
* * * * *
559878 TATCATCAGCACATTGTTTACCCTCGTCTTGTCCCAACTCCTTTTTCTTATCATCAACCG
1 TATCATCAGCACATCGTTTACCCTTGTCTTGTCCCAACTCCTTTATCTCACCATCAACCG
* * * * * *
559938 TATCATCTA-CACGTCGTTTACCCTTGTCTTGTCCCAACTTCTTTTTCTTATCATCAACTG
1 TATCATC-AGCACATCGTTTACCCTTGTCTTGTCCCAACTCCTTTATCTCACCATCAACCG
* *
559998 TATCATCAGCACATTGTCTACCCTTGTCTTGTCCCAACTCCTTTATCTCACCATCAACCG
1 TATCATCAGCACATCGTTTACCCTTGTCTTGTCCCAACTCCTTTATCTCACCATCAACCG
* * * *
560058 TATCATCTGCACGTCGTTTGCCCTTGTCTTG-CCTGAACTCCTTTATCTCACCATCAACCG
1 TATCATCAGCACATCGTTTACCCTTGTCTTGTCC-CAACTCCTTTATCTCACCATCAACCG
560118 CTTTATCTGC
Statistics
Matches: 158, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
59 3 0.02
60 154 0.97
61 1 0.01
ACGTcount: A:0.19, C:0.34, G:0.10, T:0.38
Consensus pattern (60 bp):
TATCATCAGCACATCGTTTACCCTTGTCTTGTCCCAACTCCTTTATCTCACCATCAACCG
Found at i:560113 original size:120 final size:120
Alignment explanation
Indices: 559878--560115 Score: 352
Period size: 120 Copynumber: 2.0 Consensus size: 120
559868 TCTTTTTTCT
* * * *
559878 TATCATCAGCACATTGTTTACCCTCGTCTTGTCCCAACTCCTTTTTCTTATCATCAACCGTATCA
1 TATCATCAGCACATTGTCTACCCTCGTCTTGTCCCAACTCCTTTATCTCACCATCAACCGTATCA
* * * *
559943 TCTACACGTCGTTTACCCTTGTCTTGTCCCAACTTCTTTTTCTTATCATCAACTG
66 TCTACACGTCGTTTACCCTTGTCTTGTCCCAACTCCTTTATCTCACCATCAACTG
*
559998 TATCATCAGCACATTGTCTACCCTTGTCTTGTCCCAACTCCTTTATCTCACCATCAACCGTATCA
1 TATCATCAGCACATTGTCTACCCTCGTCTTGTCCCAACTCCTTTATCTCACCATCAACCGTATCA
* * *
560063 TCTGCACGTCGTTTGCCCTTGTCTTG-CCTGAACTCCTTTATCTCACCATCAAC
66 TCTACACGTCGTTTACCCTTGTCTTGTCC-CAACTCCTTTATCTCACCATCAAC
560116 CGCTTTATCT
Statistics
Matches: 105, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
119 2 0.02
120 103 0.98
ACGTcount: A:0.19, C:0.34, G:0.09, T:0.38
Consensus pattern (120 bp):
TATCATCAGCACATTGTCTACCCTCGTCTTGTCCCAACTCCTTTATCTCACCATCAACCGTATCA
TCTACACGTCGTTTACCCTTGTCTTGTCCCAACTCCTTTATCTCACCATCAACTG
Found at i:580681 original size:60 final size:60
Alignment explanation
Indices: 580610--580879 Score: 369
Period size: 60 Copynumber: 4.5 Consensus size: 60
580600 CGATTACTTT
* *** * * * * * *
580610 TCCCAACTCCTTTTTCTTTTCATCATCTGTATCAACAGCACATTGTTTACCCTTATCTTG
1 TCCCAACTCCTTTATCTCACCATCAACCGTATCATCTGCACATCGTTTACCCTTGTCTTG
* *
580670 TCCCAACTCCTTTATCTCACCATCAACCGTATCATCTGCACATCGTTTGCCCTTGTCATG
1 TCCCAACTCCTTTATCTCACCATCAACCGTATCATCTGCACATCGTTTACCCTTGTCTTG
* * * ** *
580730 TCTCAACTCTTTTATCTCACCACCAACCGTATCATCTGTGCGTCGTTTACCCTTGTCTTG
1 TCCCAACTCCTTTATCTCACCATCAACCGTATCATCTGCACATCGTTTACCCTTGTCTTG
*
580790 TCCCAACTCCTTTATCTCACCATCAACCGTATCATCTGCACGTCGTTTACCCTTGTCTTG
1 TCCCAACTCCTTTATCTCACCATCAACCGTATCATCTGCACATCGTTTACCCTTGTCTTG
580850 TCCCAACTCCTTTATCTCACCATCAACCGT
1 TCCCAACTCCTTTATCTCACCATCAACCGT
580880 TTTATCTACA
Statistics
Matches: 185, Mismatches: 25, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
60 185 1.00
ACGTcount: A:0.19, C:0.35, G:0.09, T:0.37
Consensus pattern (60 bp):
TCCCAACTCCTTTATCTCACCATCAACCGTATCATCTGCACATCGTTTACCCTTGTCTTG
Found at i:587306 original size:46 final size:46
Alignment explanation
Indices: 587197--587333 Score: 132
Period size: 46 Copynumber: 3.0 Consensus size: 46
587187 CGAACAACCG
* * ** *
587197 AAATACAAGTTAGTGCATCCTTACGGGATGATAAATCCAATTACTA
1 AAATACAGGCTAGTGCATCCTTACCAGATGATAAATCCAATTACCA
* *
587243 AAATACAGGCTAATGCATCCTTACCAGATGATAAATCCAATTACCG
1 AAATACAGGCTAGTGCATCCTTACCAGATGATAAATCCAATTACCA
** * * * * *
587289 ATTTGCAGGCTGGTGCATCTTTAGCAGATGGT-AATCCCAATTACC
1 AAATACAGGCTAGTGCATCCTTACCAGATGATAAAT-CCAATTACC
587334 TTATTATAGT
Statistics
Matches: 75, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
45 3 0.04
46 72 0.96
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (46 bp):
AAATACAGGCTAGTGCATCCTTACCAGATGATAAATCCAATTACCA
Found at i:589611 original size:12 final size:12
Alignment explanation
Indices: 589596--589654 Score: 59
Period size: 12 Copynumber: 4.9 Consensus size: 12
589586 TAGAAATCAA
589596 AACAGAATTCAG
1 AACAGAATTCAG
589608 AACAG-ATATCAG
1 AACAGAAT-TCAG
*
589620 AACAGAATCCA-
1 AACAGAATTCAG
* *
589631 AATCATAAATCAG
1 AA-CAGAATTCAG
589644 AACAGAATTCA
1 AACAGAATTCA
589655 TGTCATGTAT
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
11 4 0.11
12 29 0.78
13 4 0.11
ACGTcount: A:0.53, C:0.19, G:0.12, T:0.17
Consensus pattern (12 bp):
AACAGAATTCAG
Found at i:589618 original size:24 final size:24
Alignment explanation
Indices: 589582--589692 Score: 91
Period size: 24 Copynumber: 4.6 Consensus size: 24
589572 TTAAACGGAG
* *
589582 AAATTAGAAATCAAAACAGAATTC
1 AAATCAGAAATCAGAACAGAATTC
* *
589606 AGAA-CAGATATCAGAACAGAATCC
1 A-AATCAGAAATCAGAACAGAATTC
*
589630 AAATCATAAATCAGAACAGAATTC
1 AAATCAGAAATCAGAACAGAATTC
** * *
589654 ATGTCATG-TATCAGAACATAATTC
1 AAATCA-GAAATCAGAACAGAATTC
* *
589678 AAGTCGGAAATCAGA
1 AAATCAGAAATCAGA
589693 TAAAATATTT
Statistics
Matches: 68, Mismatches: 15, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
23 3 0.04
24 63 0.93
25 2 0.03
ACGTcount: A:0.50, C:0.16, G:0.14, T:0.21
Consensus pattern (24 bp):
AAATCAGAAATCAGAACAGAATTC
Found at i:595386 original size:19 final size:19
Alignment explanation
Indices: 595373--595416 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
595363 CTCTGAACTT
595373 TGATATATGTTCTGATCTC
1 TGATATATGTTCTGATCTC
* *
595392 TGATTTATGTTATGATCTC
1 TGATATATGTTCTGATCTC
595411 TGATAT
1 TGATAT
595417 CTACTCAGAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.23, C:0.11, G:0.16, T:0.50
Consensus pattern (19 bp):
TGATATATGTTCTGATCTC
Found at i:598153 original size:7 final size:7
Alignment explanation
Indices: 598138--598219 Score: 146
Period size: 7 Copynumber: 11.6 Consensus size: 7
598128 TCACTAGGAG
598138 TTCCTTCC
1 TTCC-TCC
*
598146 TTCTTCC
1 TTCCTCC
598153 TTCCTCC
1 TTCCTCC
598160 TTCCTCC
1 TTCCTCC
598167 TTCCTCC
1 TTCCTCC
598174 TTCCTCC
1 TTCCTCC
598181 TTCCTCC
1 TTCCTCC
598188 TTCCTCC
1 TTCCTCC
598195 TTCCTCC
1 TTCCTCC
598202 TTCCTCC
1 TTCCTCC
598209 TTCCTCC
1 TTCCTCC
598216 TTCC
1 TTCC
598220 ATTTAGGTAG
Statistics
Matches: 72, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
7 69 0.96
8 3 0.04
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (7 bp):
TTCCTCC
Found at i:601996 original size:120 final size:120
Alignment explanation
Indices: 601761--601998 Score: 352
Period size: 120 Copynumber: 2.0 Consensus size: 120
601751 TCTTTTTTCT
* * * *
601761 TATCATCAGCACATTGTTTACCCTCGTCTTGTCCCAACTCCTTTTTCTTATCATCAACCGTATCA
1 TATCATCAGCACATTGTCTACCCTCGTCTTGTCCCAACTCCTTTATCTCACCATCAACCGTATCA
* * * *
601826 TCTACACGTCGTTTACCCTTGTCTTGTCCCAACTTCTTTTTCTTATCATCAACTG
66 TCTACACGTCGTTTACCCTTGTCTTGTCCCAACTCCTTTATCTCACCATCAACTG
*
601881 TATCATCAGCACATTGTCTACCCTTGTCTTGTCCCAACTCCTTTATCTCACCATCAACCGTATCA
1 TATCATCAGCACATTGTCTACCCTCGTCTTGTCCCAACTCCTTTATCTCACCATCAACCGTATCA
* * *
601946 TCTGCACGTCGTTTGCCCTTGTCTTG-CCTGAACTCCTTTATCTCACCATCAAC
66 TCTACACGTCGTTTACCCTTGTCTTGTCC-CAACTCCTTTATCTCACCATCAAC
601999 CGTTTTATCT
Statistics
Matches: 105, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
119 2 0.02
120 103 0.98
ACGTcount: A:0.19, C:0.34, G:0.09, T:0.38
Consensus pattern (120 bp):
TATCATCAGCACATTGTCTACCCTCGTCTTGTCCCAACTCCTTTATCTCACCATCAACCGTATCA
TCTACACGTCGTTTACCCTTGTCTTGTCCCAACTCCTTTATCTCACCATCAACTG
Found at i:602009 original size:60 final size:60
Alignment explanation
Indices: 601761--602012 Score: 299
Period size: 60 Copynumber: 4.2 Consensus size: 60
601751 TCTTTTTTCT
* * * * * * *
601761 TATCATCAGCACATTGTTTACCCTCGTCTTGTCCCAACTCCTTTTTCTTATCATCAACCG
1 TATCATCTGCACGTCGTTTACCCTTGTCTTGTCCCAACTCCTTTATCTCACCATCAACCG
* * * * * *
601821 TATCATCTACACGTCGTTTACCCTTGTCTTGTCCCAACTTCTTTTTCTTATCATCAACTG
1 TATCATCTGCACGTCGTTTACCCTTGTCTTGTCCCAACTCCTTTATCTCACCATCAACCG
* * * *
601881 TATCATCAGCACATTGTCTACCCTTGTCTTGTCCCAACTCCTTTATCTCACCATCAACCG
1 TATCATCTGCACGTCGTTTACCCTTGTCTTGTCCCAACTCCTTTATCTCACCATCAACCG
* *
601941 TATCATCTGCACGTCGTTTGCCCTTGTCTTG-CCTGAACTCCTTTATCTCACCATCAACCG
1 TATCATCTGCACGTCGTTTACCCTTGTCTTGTCC-CAACTCCTTTATCTCACCATCAACCG
* *
602001 TTTTATCTGCAC
1 TATCATCTGCAC
602013 AATACGAAGG
Statistics
Matches: 166, Mismatches: 25, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
59 2 0.01
60 164 0.99
ACGTcount: A:0.19, C:0.33, G:0.10, T:0.38
Consensus pattern (60 bp):
TATCATCTGCACGTCGTTTACCCTTGTCTTGTCCCAACTCCTTTATCTCACCATCAACCG
Found at i:609801 original size:23 final size:23
Alignment explanation
Indices: 609775--609835 Score: 95
Period size: 23 Copynumber: 2.7 Consensus size: 23
609765 CACCATAGCT
609775 CATATAATTGCACCGAAGTACCA
1 CATATAATTGCACCGAAGTACCA
*
609798 CATATAATTGCACCGAAGTGCCA
1 CATATAATTGCACCGAAGTACCA
* *
609821 CGTAGAATTGCACCG
1 CATATAATTGCACCG
609836 TAGTGCCATA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.21
Consensus pattern (23 bp):
CATATAATTGCACCGAAGTACCA
Found at i:609840 original size:23 final size:23
Alignment explanation
Indices: 609775--609843 Score: 93
Period size: 23 Copynumber: 3.0 Consensus size: 23
609765 CACCATAGCT
* *
609775 CATATAATTGCACCGAAGTACCA
1 CATAGAATTGCACCGAAGTGCCA
*
609798 CATATAATTGCACCGAAGTGCCA
1 CATAGAATTGCACCGAAGTGCCA
* *
609821 CGTAGAATTGCACCGTAGTGCCA
1 CATAGAATTGCACCGAAGTGCCA
609844 TATAATAATG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22
Consensus pattern (23 bp):
CATAGAATTGCACCGAAGTGCCA
Done.