Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008708.1 Hibiscus syriacus cultivar Beakdansim tig00111754_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1112311
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 4
Found at i:959616 original size:80 final size:80
Alignment explanation
Indices: 959480--959710 Score: 329
Period size: 80 Copynumber: 2.9 Consensus size: 80
959470 TGTAAGACCT
*
959480 TACGGACCTAAGGATATCTTGGGTAGGCCCCAAGGCATATCCTTAGGTTGGTTCCCTTTGCTGTG
1 TACGGACCTAAGGATATCTTGGGTAGGCCCCAAGGCATATCCTTAGGTTGGCTCCCTTTGCTGTG
959545 TGCATAAGGTAACCC
66 TGCATAAGGTAACCC
* * *
959560 TACGGACCTAAGGATATCTTGGGTAGGCCCCAAGGCATATCCTCAGGTTGGGTCCCTTAGCTGTG
1 TACGGACCTAAGGATATCTTGGGTAGGCCCCAAGGCATATCCTTAGGTTGGCTCCCTTTGCTGTG
*
959625 TGCTTAAGGTAACCC
66 TGCATAAGGTAACCC
* * ** *
959640 TACGGATCTAAGGATCTCCTTGGGTA-GATCCAAGGTATATCCTTAGGTTGGCTCCCCTTTTTGC
1 TACGGACCTAAGGATAT-CTTGGGTAGGCCCCAAGGCATATCCTTAGGTTGGCT-CCC--TTTGC
959704 TGTGTGC
62 TGTGTGC
959711 TTAGGGAAAG
Statistics
Matches: 135, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
80 113 0.84
81 11 0.08
83 11 0.08
ACGTcount: A:0.20, C:0.24, G:0.26, T:0.30
Consensus pattern (80 bp):
TACGGACCTAAGGATATCTTGGGTAGGCCCCAAGGCATATCCTTAGGTTGGCTCCCTTTGCTGTG
TGCATAAGGTAACCC
Found at i:962354 original size:19 final size:19
Alignment explanation
Indices: 962332--962374 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
962322 CGGATCAACA
962332 GTCAAAGCCAAAGTCAATG
1 GTCAAAGCCAAAGTCAATG
*
962351 GTCAAAGTCAAAGTCAATG
1 GTCAAAGCCAAAGTCAATG
962370 GTCAA
1 GTCAA
962375 TTATCAACGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.42, C:0.19, G:0.21, T:0.19
Consensus pattern (19 bp):
GTCAAAGCCAAAGTCAATG
Found at i:962389 original size:21 final size:20
Alignment explanation
Indices: 962344--962403 Score: 77
Period size: 21 Copynumber: 3.0 Consensus size: 20
962334 CAAAGCCAAA
* *
962344 GTCAATGGTCAAAGTCAA-A
1 GTCAATGGTCAAATTCAACG
*
962363 GTCAATGGTCAATTATCAACG
1 GTCAATGGTCAAAT-TCAACG
962384 GTCAATGGTCAAATTCAACG
1 GTCAATGGTCAAATTCAACG
962404 ATCGATGGGT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
19 12 0.34
20 10 0.29
21 13 0.37
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (20 bp):
GTCAATGGTCAAATTCAACG
Found at i:962411 original size:20 final size:19
Alignment explanation
Indices: 962344--962403 Score: 75
Period size: 19 Copynumber: 3.1 Consensus size: 19
962334 CAAAGCCAAA
* *
962344 GTCAATGGTCAAAGTCAAA
1 GTCAATGGTCAAATTCAAC
*
962363 GTCAATGGTCAATTATCAAC
1 GTCAATGGTCAAAT-TCAAC
962383 GGTCAATGGTCAAATTCAAC
1 -GTCAATGGTCAAATTCAAC
962403 G
1 G
962404 ATCGATGGGT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
19 13 0.37
20 9 0.26
21 13 0.37
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (19 bp):
GTCAATGGTCAAATTCAAC
Found at i:968442 original size:33 final size:33
Alignment explanation
Indices: 968382--968444 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
968372 TCTATGGTTT
*
968382 CGGAGTTGGTGATTTTGGCGATACTATCAGACA
1 CGGAGTTGGTGATTTTGGCGAAACTATCAGACA
968415 CGGAGTTGGTGATTTTGGC-AAAGCTATCAG
1 CGGAGTTGGTGATTTTGGCGAAA-CTATCAG
968445 CCACTTTGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
32 2 0.07
33 26 0.93
ACGTcount: A:0.24, C:0.14, G:0.32, T:0.30
Consensus pattern (33 bp):
CGGAGTTGGTGATTTTGGCGAAACTATCAGACA
Found at i:970512 original size:20 final size:20
Alignment explanation
Indices: 970487--970529 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
970477 CAAAAATCGC
*
970487 GATTCTGACTTTCGCAACGA
1 GATTCTGACTATCGCAACGA
970507 GATTCTGACTATCGCAACGA
1 GATTCTGACTATCGCAACGA
970527 GAT
1 GAT
970530 AATACAGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (20 bp):
GATTCTGACTATCGCAACGA
Found at i:970914 original size:19 final size:20
Alignment explanation
Indices: 970870--970916 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
970860 CGCAACGGGG
970870 AAATCGCAACGCGAAAATGA
1 AAATCGCAACGCGAAAATGA
**
970890 CTATCGCAACGCG-AAATGA
1 AAATCGCAACGCGAAAATGA
970909 AAATCGCA
1 AAATCGCA
970917 TTGCGATTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
19 12 0.52
20 11 0.48
ACGTcount: A:0.45, C:0.23, G:0.19, T:0.13
Consensus pattern (20 bp):
AAATCGCAACGCGAAAATGA
Found at i:970951 original size:19 final size:19
Alignment explanation
Indices: 970924--970976 Score: 88
Period size: 19 Copynumber: 2.8 Consensus size: 19
970914 GCATTGCGAT
*
970924 TTTCTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTCA
970943 TTTCGCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTCA
*
970962 TTTCGCATTGCGATT
1 TTTCGCGTTGCGATT
970977 CTCTCGTTGC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.11, C:0.21, G:0.19, T:0.49
Consensus pattern (19 bp):
TTTCGCGTTGCGATTTTCA
Found at i:972618 original size:42 final size:41
Alignment explanation
Indices: 972572--972651 Score: 117
Period size: 42 Copynumber: 1.9 Consensus size: 41
972562 CAATGACAGT
*
972572 GGCCTCTTGAACTG-TGGGGGGAGACTCTTGAGGGATGATAGG
1 GGCCTCTTGAAC-GATGGAGGG-GACTCTTGAGGGATGATAGG
972614 GGCCTCTTGAACGATTGGAGGGGACTCTTGAGGGATGA
1 GGCCTCTTGAACGA-TGGAGGGGACTCTTGAGGGATGA
972652 CAGGTGAGTC
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
41 1 0.03
42 28 0.80
43 6 0.17
ACGTcount: A:0.20, C:0.15, G:0.41, T:0.24
Consensus pattern (41 bp):
GGCCTCTTGAACGATGGAGGGGACTCTTGAGGGATGATAGG
Found at i:972620 original size:21 final size:21
Alignment explanation
Indices: 972594--972651 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
972584 TGTGGGGGGA
*
972594 GACTCTTGAGGGATGATAGGG
1 GACTCTTGAGGGATGAGAGGG
* **
972615 GCCTCTTGAACGATTG-GAGGG
1 GACTCTTGAGGGA-TGAGAGGG
972636 GACTCTTGAGGGATGA
1 GACTCTTGAGGGATGA
972652 CAGGTGAGTC
Statistics
Matches: 28, Mismatches: 7, Indels: 4
0.72 0.18 0.10
Matches are distributed among these distances:
20 2 0.07
21 24 0.86
22 2 0.07
ACGTcount: A:0.22, C:0.14, G:0.40, T:0.24
Consensus pattern (21 bp):
GACTCTTGAGGGATGAGAGGG
Found at i:973045 original size:20 final size:20
Alignment explanation
Indices: 972998--973104 Score: 101
Period size: 20 Copynumber: 5.4 Consensus size: 20
972988 TAGTTTACTT
* *
972998 TCGCAACACGAAACAT-ACTT
1 TCGCAACGCGAAA-ATGACTA
973018 TCGCAACGCGAAAATGACTA
1 TCGCAACGCGAAAATGACTA
* *
973038 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGAAAATGACTA
* * *
973058 TAGCAACGCGGAAATGGCTA
1 TCGCAACGCGAAAATGACTA
* **
973078 TCGCAATGCG-AAATGAAAA
1 TCGCAACGCGAAAATGACTA
973097 TCGCAACG
1 TCGCAACG
973105 ACAAGATCGC
Statistics
Matches: 75, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
19 15 0.20
20 60 0.80
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.16
Consensus pattern (20 bp):
TCGCAACGCGAAAATGACTA
Found at i:973099 original size:19 final size:19
Alignment explanation
Indices: 973077--973135 Score: 67
Period size: 19 Copynumber: 3.4 Consensus size: 19
973067 GGAAATGGCT
973077 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
973096 ATCGCAA--CGACAA-G---
1 ATCGCAATGCGA-AATGAAA
973110 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
973129 ATCGCAA
1 ATCGCAA
973136 CGACAAGATC
Statistics
Matches: 33, Mismatches: 0, Indels: 14
0.70 0.00 0.30
Matches are distributed among these distances:
14 7 0.21
15 2 0.06
16 4 0.12
17 4 0.12
18 2 0.06
19 14 0.42
ACGTcount: A:0.46, C:0.20, G:0.20, T:0.14
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:973115 original size:14 final size:14
Alignment explanation
Indices: 973096--973151 Score: 51
Period size: 14 Copynumber: 3.6 Consensus size: 14
973086 CGAAATGAAA
973096 ATCGCAACGACAAG
1 ATCGCAACGACAAG
973110 ATCGCAATGCGA-AATG
1 ATCGCAA--CGACAA-G
973126 AAAATCGCAACGACAAG
1 ---ATCGCAACGACAAG
973143 ATCGCAACG
1 ATCGCAACG
973152 CGAAACATAA
Statistics
Matches: 35, Mismatches: 0, Indels: 14
0.71 0.00 0.29
Matches are distributed among these distances:
14 16 0.46
15 2 0.06
16 4 0.11
17 4 0.11
18 2 0.06
19 7 0.20
ACGTcount: A:0.43, C:0.25, G:0.21, T:0.11
Consensus pattern (14 bp):
ATCGCAACGACAAG
Found at i:973167 original size:33 final size:33
Alignment explanation
Indices: 973077--973156 Score: 151
Period size: 33 Copynumber: 2.4 Consensus size: 33
973067 GGAAATGGCT
973077 ATCGCAATGCGAAATGAAAATCGCAACGACAAG
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAG
973110 ATCGCAATGCGAAATGAAAATCGCAACGACAAG
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAG
*
973143 ATCGCAACGCGAAA
1 ATCGCAATGCGAAA
973157 CATAAATCGC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.45, C:0.23, G:0.21, T:0.11
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAG
Found at i:973185 original size:19 final size:19
Alignment explanation
Indices: 973163--973279 Score: 85
Period size: 19 Copynumber: 6.6 Consensus size: 19
973153 GAAACATAAA
973163 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
973182 TCGCGTTGCGA---TC-TT
1 TCGCATTGCGATTTTCATT
973197 GTCG--TTGCGATTTTCATT
1 -TCGCATTGCGATTTTCATT
*
973215 TCGCATTGCGATCTT-A--
1 TCGCATTGCGATTTTCATT
973231 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
* ***
973248 TCGCATTGTGATAGCCATT
1 TCGCATTGCGATTTTCATT
973267 TCCGCATTGCGAT
1 T-CGCATTGCGAT
973280 AGTCATTTTC
Statistics
Matches: 77, Mismatches: 8, Indels: 25
0.70 0.07 0.23
Matches are distributed among these distances:
14 15 0.19
15 3 0.04
16 8 0.10
17 8 0.10
18 3 0.04
19 30 0.39
20 10 0.13
ACGTcount: A:0.15, C:0.22, G:0.21, T:0.43
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:973210 original size:33 final size:33
Alignment explanation
Indices: 973168--973255 Score: 158
Period size: 33 Copynumber: 2.7 Consensus size: 33
973158 ATAAATCGCA
* *
973168 TTGCGATTTTCATTTCGCGTTGCGATCTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATCTTATCG
973201 TTGCGATTTTCATTTCGCATTGCGATCTTATCG
1 TTGCGATTTTCATTTCGCATTGCGATCTTATCG
973234 TTGCGATTTTCATTTCGCATTG
1 TTGCGATTTTCATTTCGCATTG
973256 TGATAGCCAT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 53 1.00
ACGTcount: A:0.12, C:0.20, G:0.20, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATCTTATCG
Found at i:973274 original size:20 final size:19
Alignment explanation
Indices: 973244--973287 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
973234 TTGCGATTTT
*
973244 CATTTCGCATTGTGATAGC
1 CATTTCGCATTGCGATAGC
*
973263 CATTTCCGCATTGCGATAGT
1 CATTT-CGCATTGCGATAGC
973283 CATTT
1 CATTT
973288 TCGTGTTGCG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.39
Consensus pattern (19 bp):
CATTTCGCATTGCGATAGC
Found at i:973862 original size:18 final size:18
Alignment explanation
Indices: 973839--973886 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
973829 CGGGTCAATT
973839 AGGTGATGGCTCTGGGTG
1 AGGTGATGGCTCTGGGTG
**
973857 AGGTGATATCTCTGGGTG
1 AGGTGATGGCTCTGGGTG
973875 AGGTGATGGCTC
1 AGGTGATGGCTC
973887 CCGAAGTGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.15, C:0.12, G:0.44, T:0.29
Consensus pattern (18 bp):
AGGTGATGGCTCTGGGTG
Found at i:975231 original size:20 final size:20
Alignment explanation
Indices: 975206--975279 Score: 69
Period size: 20 Copynumber: 3.8 Consensus size: 20
975196 AATAGTTTCT
975206 GAAAATGAAAATCGCAACAC
1 GAAAATGAAAATCGCAACAC
* *
975226 GAAAATGACAATCGCAACGC
1 GAAAATGAAAATCGCAACAC
** ** *
975246 GAATTTGATTATCGCAACAA
1 GAAAATGAAAATCGCAACAC
*
975266 GAGAAT-AAAATCGC
1 GAAAATGAAAATCGC
975280 GTTGCGATTT
Statistics
Matches: 41, Mismatches: 13, Indels: 1
0.75 0.24 0.02
Matches are distributed among these distances:
19 6 0.15
20 35 0.85
ACGTcount: A:0.47, C:0.19, G:0.18, T:0.16
Consensus pattern (20 bp):
GAAAATGAAAATCGCAACAC
Found at i:975536 original size:22 final size:22
Alignment explanation
Indices: 975509--975552 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
975499 GATGGAGATA
975509 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
975531 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
975553 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:975768 original size:20 final size:20
Alignment explanation
Indices: 975739--975803 Score: 96
Period size: 20 Copynumber: 3.2 Consensus size: 20
975729 GATTATGTAT
*
975739 TATCTCGTTGCGAAAGTCAG
1 TATCTAGTTGCGAAAGTCAG
*
975759 TATCTAGTTGCGAAAGTAAG
1 TATCTAGTTGCGAAAGTCAG
975779 TATC-ACGTTGCGAAAGTCAG
1 TATCTA-GTTGCGAAAGTCAG
975799 TATCT
1 TATCT
975804 CATTGCGATT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
19 1 0.03
20 39 0.98
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (20 bp):
TATCTAGTTGCGAAAGTCAG
Found at i:975809 original size:20 final size:20
Alignment explanation
Indices: 975739--975811 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
975729 GATTATGTAT
*
975739 TATCTCGTTGCGAAAGTCAG
1 TATCTCATTGCGAAAGTCAG
*
975759 TATCT-AGTTGCGAAAGTAAG
1 TATCTCA-TTGCGAAAGTCAG
* *
975779 TATCACGTTGCGAAAGTCAG
1 TATCTCATTGCGAAAGTCAG
975799 TATCTCATTGCGA
1 TATCTCATTGCGA
975812 TTTTGTATTA
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (20 bp):
TATCTCATTGCGAAAGTCAG
Found at i:975841 original size:41 final size:41
Alignment explanation
Indices: 975723--975854 Score: 162
Period size: 41 Copynumber: 3.2 Consensus size: 41
975713 TTGAAAATCG
*
975723 CATTGCGATTATGTATTATCTCGTTGCGAAAGTCAGTATCT
1 CATTGCGATTATGTATTATCACGTTGCGAAAGTCAGTATCT
* *
975764 -AGTTGCGA--AAGTAAGTATCACGTTGCGAAAGTCAGTATCT
1 CA-TTGCGATTATGT-ATTATCACGTTGCGAAAGTCAGTATCT
* * * *
975804 CATTGCGATTTTGTATTATCGCGTTGCGATAGTCAGTATCG
1 CATTGCGATTATGTATTATCACGTTGCGAAAGTCAGTATCT
975845 CATTGCGATT
1 CATTGCGATT
975855 TTCCAAATTC
Statistics
Matches: 77, Mismatches: 9, Indels: 10
0.80 0.09 0.10
Matches are distributed among these distances:
39 3 0.04
40 32 0.42
41 40 0.52
42 2 0.03
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.36
Consensus pattern (41 bp):
CATTGCGATTATGTATTATCACGTTGCGAAAGTCAGTATCT
Found at i:975850 original size:20 final size:20
Alignment explanation
Indices: 975719--975853 Score: 78
Period size: 20 Copynumber: 6.7 Consensus size: 20
975709 CGCTTTGAAA
*
975719 ATCGCATTGCGATTATGT-ATT
1 ATCGCATTGCGA-TA-GTCAGT
* * *
975740 ATCTCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATAGTCAGT
* * *
975760 ATC-TAGTTGCGAAAGTAAGT
1 ATCGCA-TTGCGATAGTCAGT
* * *
975780 ATCACGTTGCGAAAGTCAGT
1 ATCGCATTGCGATAGTCAGT
* * *
975800 ATCTCATTGCGATTTTGT-ATT
1 ATCGCATTGCGA--TAGTCAGT
*
975821 ATCGCGTTGCGATAGTCAGT
1 ATCGCATTGCGATAGTCAGT
975841 ATCGCATTGCGAT
1 ATCGCATTGCGAT
975854 TTTCCAAATT
Statistics
Matches: 88, Mismatches: 20, Indels: 13
0.73 0.17 0.11
Matches are distributed among these distances:
19 5 0.06
20 59 0.67
21 22 0.25
22 2 0.02
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (20 bp):
ATCGCATTGCGATAGTCAGT
Found at i:975872 original size:41 final size:41
Alignment explanation
Indices: 975786--975874 Score: 108
Period size: 41 Copynumber: 2.2 Consensus size: 41
975776 AAGTATCACG
* * ** * *
975786 TTGCGAAAGTCAGTATCTCATTGCGATTTTGTATTATCGCG
1 TTGCGATAGTCAGTATCGCATTGCGATTTTCAAATATCGCA
975827 TTGCGATAGTCAGTATCGCATTGCGATTTTCCAAAT-TCGCA
1 TTGCGATAGTCAGTATCGCATTGCGATTTT-CAAATATCGCA
975868 TTGCGAT
1 TTGCGAT
975875 TTACTTAATC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
41 39 0.95
42 2 0.05
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.37
Consensus pattern (41 bp):
TTGCGATAGTCAGTATCGCATTGCGATTTTCAAATATCGCA
Found at i:975907 original size:21 final size:20
Alignment explanation
Indices: 975881--975935 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 20
975871 CGATTTACTT
975881 AATCGCAATGCGAATTGGGAA
1 AATCGCAATGCGAATT-GGAA
975902 AATCGCAACT-CGAAATTGGAA
1 AATCGCAA-TGCG-AATTGGAA
*
975923 AATCGCATTGCGA
1 AATCGCAATGCGA
975936 TAGTAATAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
20 2 0.07
21 23 0.77
22 5 0.17
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.20
Consensus pattern (20 bp):
AATCGCAATGCGAATTGGAA
Found at i:978111 original size:2 final size:2
Alignment explanation
Indices: 978104--978156 Score: 88
Period size: 2 Copynumber: 26.5 Consensus size: 2
978094 TTATACTTTA
* *
978104 AT AT AT AT AT AC AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
978146 AT AT AT AT AT A
1 AT AT AT AT AT A
978157 CACACAATAT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:979984 original size:3 final size:3
Alignment explanation
Indices: 979966--980012 Score: 51
Period size: 3 Copynumber: 15.3 Consensus size: 3
979956 GCAAATGTAA
* *
979966 AAT AAT AAAT ATT AAT AAT AAT AAT AAT AAT AAC AAT -AT AATT AAT
1 AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT
980012 A
1 A
980013 TTTATAATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
2 2 0.05
3 29 0.78
4 6 0.16
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:980418 original size:55 final size:54
Alignment explanation
Indices: 980260--980671 Score: 371
Period size: 55 Copynumber: 7.7 Consensus size: 54
980250 AGTTTGTTCT
* *
980260 CTATTCCTTCAGAGAGTATAGGAC-T-A-AATCTTCAACAAATGTGTCCGCTCC
1 CTATTCCTTCAGAGAGTATAGGACTTAACAATCTTCAACAAACGTGTCTGCTCC
*
980311 CCATTCCTTCAGAGAGTATAGGAC-T--CAATCTTCAATCAAACGTGTCTGCTCC
1 CTATTCCTTCAGAGAGTATAGGACTTAACAATCTTCAA-CAAACGTGTCTGCTCC
* * * *
980363 CTATTTCTTCAGAGAGTATATGACTTAAAAAACCTTCAACAAACGTGTCCT-CTCC
1 CTATTCCTTCAGAGAGTATAGGACTT-AACAATCTTCAACAAACGTGT-CTGCTCC
* * * *
980418 CTATTCCTTCAGAAAGTATAGGAC-T--CGATCTTCAACAAATGTGTCTGCCCC
1 CTATTCCTTCAGAGAGTATAGGACTTAACAATCTTCAACAAACGTGTCTGCTCC
* * * * **
980469 CTATTCCTTCAGAGAGTATAAGACTCGAATAATTTTCAACATTCGTGTCTGCTCC
1 CTATTCCTTCAGAGAGTATAGGACT-TAACAATCTTCAACAAACGTGTCTGCTCC
* * * * ** *
980524 CTATTTCTTCAGAGAGTATTA-GACTCGAACAATTTTCAATATTCATGTCTGCTCC
1 CTATTCCTTCAGAGAGTA-TAGGACT-TAACAATCTTCAACAAACGTGTCTGCTCC
* * * *
980579 CTATTGCTTAAGAGAGTAT-GAGACTTGAACAATCTTCAACAATCGTGTCTGCTCT
1 CTATTCCTTCAGAGAGTATAG-GACTT-AACAATCTTCAACAAACGTGTCTGCTCC
** * *
980634 CTATTTGTTCAGAGAGTATAAGACTCGAACAATCTTCA
1 CTATTCCTTCAGAGAGTATAGGACT-TAACAATCTTCA
980672 TTTGCTTCAC
Statistics
Matches: 300, Mismatches: 43, Indels: 32
0.80 0.11 0.09
Matches are distributed among these distances:
50 2 0.01
51 73 0.24
52 35 0.12
53 1 0.00
54 2 0.01
55 175 0.58
56 12 0.04
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (54 bp):
CTATTCCTTCAGAGAGTATAGGACTTAACAATCTTCAACAAACGTGTCTGCTCC
Found at i:980617 original size:110 final size:109
Alignment explanation
Indices: 980211--980671 Score: 382
Period size: 110 Copynumber: 4.3 Consensus size: 109
980201 TGCTCTTTTG
* * * * * * * * *
980211 CTTCAGGGAGTATAAAACTCAAACAATCTTCATA-AAACAAGTTTGTTCTCTATTCCTTCAGAGA
1 CTTCAGAGAGTATTAGACTCGAACAATCTTCA-ACAAATATGTCTGCTCCCTATTCCTTCAGAGA
* * *
980275 GTATAGGAC-T---AAATCTTCAACAAAT-GTGTCCGCTCCCCATTC
65 GTATA-GACTTGAAAAATCTTCAAC-AATCGTGTCTGCTCCCTATTT
** *
980317 CTTCAGAGAGTA-TAGGACT----CAATCTTCAATCAAACGTGTCTGCTCCCTATTTCTTCAGAG
1 CTTCAGAGAGTATTA-GACTCGAACAATCTTCAA-CAAATATGTCTGCTCCCTATTCCTTCAGAG
* * * *
980377 AGTATATGACTTAAAAAACCTTCAACAAACGTGTCCT-CTCCCTATTC
64 AGTATA-GACTTGAAAAATCTTCAACAATCGTGT-CTGCTCCCTATTT
* * *
980424 CTTCAGAAAGTA-TAGGACTCG----ATCTTCAACAAATGTGTCTGCCCCCTATTCCTTCAGAGA
1 CTTCAGAGAGTATTA-GACTCGAACAATCTTCAACAAATATGTCTGCTCCCTATTCCTTCAGAGA
* * * *
980484 GTATAAGACTCGAATAATTTTCAACATTCGTGTCTGCTCCCTATTT
65 GTAT-AGACTTGAAAAATCTTCAACAATCGTGTCTGCTCCCTATTT
* * * * *
980530 CTTCAGAGAGTATTAGACTCGAACAATTTTCAA-TATTCATGTCTGCTCCCTATTGCTTAAGAGA
1 CTTCAGAGAGTATTAGACTCGAACAATCTTCAACAAAT-ATGTCTGCTCCCTATTCCTTCAGAGA
* *
980594 GTATGAGACTTGAACAATCTTCAACAATCGTGTCTGCTCTCTATTT
65 GTAT-AGACTTGAAAAATCTTCAACAATCGTGTCTGCTCCCTATTT
* *
980640 GTTCAGAGAGTATAAGACTCGAACAATCTTCA
1 CTTCAGAGAGTATTAGACTCGAACAATCTTCA
980672 TTTGCTTCAC
Statistics
Matches: 293, Mismatches: 43, Indels: 34
0.79 0.12 0.09
Matches are distributed among these distances:
101 1 0.00
102 9 0.03
103 32 0.11
104 1 0.00
105 3 0.01
106 94 0.32
107 52 0.18
108 1 0.00
109 2 0.01
110 98 0.33
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (109 bp):
CTTCAGAGAGTATTAGACTCGAACAATCTTCAACAAATATGTCTGCTCCCTATTCCTTCAGAGAG
TATAGACTTGAAAAATCTTCAACAATCGTGTCTGCTCCCTATTT
Found at i:993649 original size:2 final size:2
Alignment explanation
Indices: 993642--993698 Score: 96
Period size: 2 Copynumber: 28.5 Consensus size: 2
993632 TATACTTTAA
* *
993642 AT AT AT AT AT AC AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
993684 AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT A
993699 CACACAATAT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:995528 original size:3 final size:3
Alignment explanation
Indices: 995510--995562 Score: 63
Period size: 3 Copynumber: 17.3 Consensus size: 3
995500 GCAAATGTAA
* *
995510 AAT AAT AAAT ATT AAT AAT AAT AAT AAT AAT AAT AAT AAC AAT -AT
1 AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
995555 AATT AAT A
1 AA-T AAT A
995563 TTTATAATAT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
2 2 0.05
3 35 0.81
4 6 0.14
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:998696 original size:2 final size:2
Alignment explanation
Indices: 998689--998716 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
998679 TTAATCCTTG
998689 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
998717 TATGCTTAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:999821 original size:60 final size:60
Alignment explanation
Indices: 999601--999818 Score: 301
Period size: 60 Copynumber: 3.6 Consensus size: 60
999591 CCTTCATATT
* * *
999601 GTGCAGATAAAACGGTTTATGGTGAGATAAAGGAGTTGAGACAAGACAAGGGCAAACGAC
1 GTGCAGATGATACGGTTGATGGTGAGATAAAGGAGTTGAGACAAGACAAGGGCAAACGAC
*
999661 GTGCAGATGATACGGTTGATGGTGAGATAAAGGAGTTGAGACAAGACAAAGGCAAACGAC
1 GTGCAGATGATACGGTTGATGGTGAGATAAAGGAGTTGAGACAAGACAAGGGCAAACGAC
* * * * *
999721 GTGCAGATGATACGGTTGATGGTGAGATAAAGGAGTTGGGACAAGGCAAGGGTAAACAAT
1 GTGCAGATGATACGGTTGATGGTGAGATAAAGGAGTTGAGACAAGACAAGGGCAAACGAC
* * * * * *
999781 GTGCTGATGATACAGATGATGATAAGAAAAAGGAGTTG
1 GTGCAGATGATACGGTTGATGGTGAGATAAAGGAGTTG
999819 GGAAAAGTAA
Statistics
Matches: 142, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
60 142 1.00
ACGTcount: A:0.38, C:0.10, G:0.33, T:0.19
Consensus pattern (60 bp):
GTGCAGATGATACGGTTGATGGTGAGATAAAGGAGTTGAGACAAGACAAGGGCAAACGAC
Found at i:999839 original size:60 final size:60
Alignment explanation
Indices: 999629--999843 Score: 166
Period size: 60 Copynumber: 3.6 Consensus size: 60
999619 ATGGTGAGAT
* * * * * * * * *
999629 AAAGGAGTTGAGAC-AAGACAAGGGCAAACGACGTGCAGATGATACGGTTGATGGTGAGAT
1 AAAGGAGTTGGGACAAAG-CAAGGGTAAACAATGTGCAGATGATACAGATGATGATAAGAA
* * * * * * * * * *
999689 AAAGGAGTTGAGAC-AAGACAAAGGCAAACGACGTGCAGATGATACGGTTGATGGTGAGAT
1 AAAGGAGTTGGGACAAAG-CAAGGGTAAACAATGTGCAGATGATACAGATGATGATAAGAA
* *
999749 AAAGGAGTTGGGACAAGGCAAGGGTAAACAATGTGCTGATGATACAGATGATGATAAGAA
1 AAAGGAGTTGGGACAAAGCAAGGGTAAACAATGTGCAGATGATACAGATGATGATAAGAA
* * *
999809 AAAGGAGTTGGGA-AAAGTAATGGTTGAACAATGTG
1 AAAGGAGTTGGGACAAAGCAA-GGGTAAACAATGTG
999844 GAGGGTTGCC
Statistics
Matches: 136, Mismatches: 17, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
59 5 0.04
60 129 0.95
61 2 0.01
ACGTcount: A:0.39, C:0.09, G:0.33, T:0.18
Consensus pattern (60 bp):
AAAGGAGTTGGGACAAAGCAAGGGTAAACAATGTGCAGATGATACAGATGATGATAAGAA
Found at i:1002780 original size:26 final size:26
Alignment explanation
Indices: 1002744--1002796 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1002734 GATAAAAGAG
1002744 AGTATTATTCTCTCTCGAGGATCCAT
1 AGTATTATTCTCTCTCGAGGATCCAT
*
1002770 AGTATTATTCTCTCTTGAGGATCCAT
1 AGTATTATTCTCTCTCGAGGATCCAT
1002796 A
1 A
1002797 TTCTAACAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.40
Consensus pattern (26 bp):
AGTATTATTCTCTCTCGAGGATCCAT
Found at i:1011245 original size:3 final size:3
Alignment explanation
Indices: 1011237--1011274 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
1011227 ACCTGTATAT
1011237 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1011275 AGAAAAATAA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 32 0.94
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:1011772 original size:139 final size:138
Alignment explanation
Indices: 1011486--1011781 Score: 335
Period size: 139 Copynumber: 2.2 Consensus size: 138
1011476 GAAACACGAT
* * **
1011486 TCCTACGTGATGAGGAAATCT-G--GTC-AA-GG--GATGACACGGCTCATACGCGATGAAGAGT
1 TCCTACGTGATGAGGAGATCTGGTCGTCTAAGGGTAGATGACACGGCTCATACACGATGAAGAAC
*
1011544 TCTGGTCATCTTTAAGAAGGGTGATAACTAGGTTCCTACGTAATGAGGCGGCTGATATCTAAGGT
66 TCTGGCCATCTTTAAGAAGGGTGATAACTAGGTTCCTACGTAATGAGGCGGCTGATATCTAAGGT
1011609 TGACACAGC
131 TGA-ACAGC
* * *
1011618 TCCTACGTGATGAGGA-AGTCTGGTCGTCTAAGGGTAGATGACATGGTTCATACATGATGAAGAA
1 TCCTACGTGATGAGGAGA-TCTGGTCGTCTAAGGGTAGATGACACGGCTCATACACGATGAAGAA
* * * *
1011682 CTCTGGCCATCTTTAGGAAGGGTGATAACTCGGTTCCTACGTGATGAGGACGGCTGGTTATCCTA
65 CTCTGGCCATCTTTAAGAAGGGTGATAACTAGGTTCCTACGTAATGAGG-CGGCT-GATAT-CTA
* *
1011747 ATGTTG-AC-TC
127 AGGTTGAACAGC
1011757 TCCTACGTG-TCGAGGAGATCTGGTC
1 TCCTACGTGAT-GAGGAGATCTGGTC
1011782 AGTTGATGTT
Statistics
Matches: 138, Mismatches: 13, Indels: 19
0.81 0.08 0.11
Matches are distributed among these distances:
131 1 0.01
132 19 0.14
133 1 0.01
135 3 0.02
136 2 0.01
137 2 0.01
138 1 0.01
139 89 0.64
140 8 0.06
141 4 0.03
142 8 0.06
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (138 bp):
TCCTACGTGATGAGGAGATCTGGTCGTCTAAGGGTAGATGACACGGCTCATACACGATGAAGAAC
TCTGGCCATCTTTAAGAAGGGTGATAACTAGGTTCCTACGTAATGAGGCGGCTGATATCTAAGGT
TGAACAGC
Found at i:1012727 original size:8 final size:8
Alignment explanation
Indices: 1012716--1012768 Score: 74
Period size: 8 Copynumber: 6.8 Consensus size: 8
1012706 TTTTTCTTTT
1012716 TTTTTTGA
1 TTTTTTGA
1012724 TTTTTTGA
1 TTTTTTGA
1012732 TTTTTTTGA
1 -TTTTTTGA
1012741 -TTTTTGA
1 TTTTTTGA
*
1012748 TTTTTT-T
1 TTTTTTGA
1012755 TTTTTTGA
1 TTTTTTGA
1012763 TTTTTT
1 TTTTTT
1012769 TAAGTGTAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
7 13 0.32
8 19 0.47
9 8 0.20
ACGTcount: A:0.09, C:0.00, G:0.09, T:0.81
Consensus pattern (8 bp):
TTTTTTGA
Found at i:1012727 original size:9 final size:9
Alignment explanation
Indices: 1012715--1012769 Score: 68
Period size: 9 Copynumber: 6.8 Consensus size: 9
1012705 TTTTTTCTTT
1012715 TTTTTTTGA
1 TTTTTTTGA
1012724 -TTTTTTGA
1 TTTTTTTGA
1012732 TTTTTTTGA
1 TTTTTTTGA
1012741 --TTTTTGA
1 TTTTTTTGA
1012748 -TTTTTT--
1 TTTTTTTGA
1012754 TTTTTTTGA
1 TTTTTTTGA
1012763 TTTTTTT
1 TTTTTTT
1012770 AAGTGTAATA
Statistics
Matches: 41, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
7 13 0.32
8 13 0.32
9 15 0.37
ACGTcount: A:0.09, C:0.00, G:0.09, T:0.82
Consensus pattern (9 bp):
TTTTTTTGA
Found at i:1012737 original size:16 final size:16
Alignment explanation
Indices: 1012716--1012768 Score: 74
Period size: 15 Copynumber: 3.4 Consensus size: 16
1012706 TTTTTCTTTT
1012716 TTTTTTGATTTTTTGA
1 TTTTTTGATTTTTTGA
1012732 TTTTTTTGA-TTTTTGA
1 -TTTTTTGATTTTTTGA
*
1012748 TTTTTT-TTTTTTTGA
1 TTTTTTGATTTTTTGA
1012763 TTTTTT
1 TTTTTT
1012769 TAAGTGTAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
15 19 0.56
16 7 0.21
17 8 0.24
ACGTcount: A:0.09, C:0.00, G:0.09, T:0.81
Consensus pattern (16 bp):
TTTTTTGATTTTTTGA
Found at i:1018141 original size:183 final size:183
Alignment explanation
Indices: 1017818--1018186 Score: 674
Period size: 183 Copynumber: 2.0 Consensus size: 183
1017808 TTTGTCTGAA
1017818 TTCTTGACAGTCCTGATTTGATGACCATTTTCACTATGGTATTCACAAAGTTCTTTGTCTTTTCC
1 TTCTTGACAGTCCTGATTTGATGACCATTTTCACTATGGTATTCACAAAGTTCTTTGTCTTTTCC
1017883 GTTGAGCATTCATTTCTAGGGCTCAACAACCCTCTCTCTTCATTTGAGCATATACCCACTTCAGT
66 GTTGAGCATTCATTTCTAGGGCTCAACAACCCTCTCTCTTCATTTGAGCATATACCCACTTCAGT
1017948 GGTGTTCTTACTTCTTCAATTCT-CTTTTAATTCT-TGATTTTTCTCAATAGCG
131 GGTGTTCTTACTTCTTCAATTCTCCTTTTAATTCTCTGATTTTTCTCAA-AGCG
1018000 TTCTTGACAGTCCTGAATTTGATGACCATTTTCACTATGGTATTCACAAAAGTTCTTTGTCTTTT
1 TTCTTGACAGTCCTG-ATTTGATGACCATTTTCACTATGGTATTCAC-AAAGTTCTTTGTCTTTT
1018065 CCGTTGAGCATTCA-TTCTAGGGCTCAACAACCCTCTCTCCTTCATTTGAGCATATA-CCACTTC
64 CCGTTGAGCATTCATTTCTAGGGCTCAACAACCCTCTCT-CTTCATTTGAGCATATACCCACTTC
1018128 AGTGGTGTTCTTACTTCTTCAATTCTCCTTTTAATTCTCTGATTTTTCTCAAAGCG
128 AGTGGTGTTCTTACTTCTTCAATTCTCCTTTTAATTCTCTGATTTTTCTCAAAGCG
1018184 TTC
1 TTC
1018187 ACTCCCTGAT
Statistics
Matches: 182, Mismatches: 0, Indels: 8
0.96 0.00 0.04
Matches are distributed among these distances:
182 15 0.08
183 88 0.48
184 66 0.36
185 13 0.07
ACGTcount: A:0.21, C:0.24, G:0.13, T:0.42
Consensus pattern (183 bp):
TTCTTGACAGTCCTGATTTGATGACCATTTTCACTATGGTATTCACAAAGTTCTTTGTCTTTTCC
GTTGAGCATTCATTTCTAGGGCTCAACAACCCTCTCTCTTCATTTGAGCATATACCCACTTCAGT
GGTGTTCTTACTTCTTCAATTCTCCTTTTAATTCTCTGATTTTTCTCAAAGCG
Found at i:1024381 original size:17 final size:18
Alignment explanation
Indices: 1024361--1024394 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
1024351 AAGAAAATAT
1024361 AATAA-ATAAGTAAAAAC
1 AATAACATAAGTAAAAAC
1024378 AATAACATAAGTAAAAA
1 AATAACATAAGTAAAAA
1024395 TAAATTATAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.71, C:0.06, G:0.06, T:0.18
Consensus pattern (18 bp):
AATAACATAAGTAAAAAC
Found at i:1026023 original size:3 final size:3
Alignment explanation
Indices: 1026015--1026064 Score: 93
Period size: 3 Copynumber: 17.0 Consensus size: 3
1026005 ACCTGTATAT
1026015 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1026062 TAA
1 TAA
1026065 AAAAAATAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 44 0.96
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:1027295 original size:35 final size:35
Alignment explanation
Indices: 1027249--1027324 Score: 125
Period size: 35 Copynumber: 2.2 Consensus size: 35
1027239 AAAATAGTCC
* *
1027249 TCAATTTCATTCTAAACCCCAATTTCCAAAGTAAT
1 TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
*
1027284 TCAATTTCATTCTAAACCCTAAATTCCAAAATAAT
1 TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
1027319 TCAATT
1 TCAATT
1027325 AAATTCAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.39, C:0.24, G:0.01, T:0.36
Consensus pattern (35 bp):
TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
Found at i:1027894 original size:126 final size:126
Alignment explanation
Indices: 1027710--1027966 Score: 410
Period size: 126 Copynumber: 2.0 Consensus size: 126
1027700 TTCAGTCTTT
*
1027710 ATTATTTATATAATCAATTTGGTCCTAAATTAAATAAAAATTTAATAAATTAATCATTTAATTAG
1 ATTATTTATATAATCAATTTGGTCCTAAATTAAAT-AAAATTTAATAAATTAATCATTTAATCAG
*
1027775 GATCTGACACGTGTTAGCACATGATCATGACACGTGTCATTGGTGACACATGTCACCACCTA
65 GATCTGACACGTGTTAACACATGATCATGACACGTGTCATTGGTGACACATGTCACCACCTA
*
1027837 ATTATTTATATGCTATCAA-TTGGTCCTAAATTAAAT-AAATTTAATAAATTAATCATTTAATCA
1 ATTATTTATAT--AATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAATCA
* * * *
1027900 GGATCTGACATGTGTTAACACATGATCATGATATGTGTTATTGGTGACACATGTCACCACCTA
64 GGATCTGACACGTGTTAACACATGATCATGACACGTGTCATTGGTGACACATGTCACCACCTA
1027963 ATTA
1 ATTA
1027967 GAAGAAAATT
Statistics
Matches: 121, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
126 88 0.73
127 11 0.09
128 17 0.14
129 5 0.04
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (126 bp):
ATTATTTATATAATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAATCAGG
ATCTGACACGTGTTAACACATGATCATGACACGTGTCATTGGTGACACATGTCACCACCTA
Found at i:1028325 original size:28 final size:27
Alignment explanation
Indices: 1028294--1028356 Score: 63
Period size: 28 Copynumber: 2.3 Consensus size: 27
1028284 AGTTGATACA
*
1028294 ATATTTTAAAAGAATAAATTTAAGATTT
1 ATATTTTAAAA-AATAAATTTAAGAATT
** * *
1028322 ATATATTTTTAAACTAAATTTAATAATT
1 ATAT-TTTAAAAAATAAATTTAAGAATT
1028350 ATATTTT
1 ATATTTT
1028357 CATATTTATA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
27 3 0.10
28 21 0.72
29 5 0.17
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (27 bp):
ATATTTTAAAAAATAAATTTAAGAATT
Found at i:1047491 original size:8 final size:8
Alignment explanation
Indices: 1047478--1047530 Score: 63
Period size: 8 Copynumber: 6.4 Consensus size: 8
1047468 AAAATGAGTG
1047478 AAAATGAA
1 AAAATGAA
1047486 AAAATGAA
1 AAAATGAA
*
1047494 AAAATAAA
1 AAAATGAA
1047502 AAAAT-AA
1 AAAATGAA
1047509 AAAATGAATGA
1 AAAATG-A--A
1047520 AAAATGAA
1 AAAATGAA
1047528 AAA
1 AAA
1047531 TGAGGGTTCA
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
7 7 0.17
8 24 0.60
9 1 0.03
10 1 0.03
11 7 0.17
ACGTcount: A:0.77, C:0.00, G:0.09, T:0.13
Consensus pattern (8 bp):
AAAATGAA
Found at i:1048615 original size:55 final size:55
Alignment explanation
Indices: 1048531--1049308 Score: 620
Period size: 55 Copynumber: 14.4 Consensus size: 55
1048521 AGATTTCCCA
* * *
1048531 ACGATTATTGAAGATTGTTCGAGCCTCATACTCTCTGAAGAAATAGGGAGCAGAC
1 ACGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGAC
*
1048586 ACGATTGTTGAAGATTGTTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAGAC
1 ACGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGAC
*
1048641 ACGATTGTTGAAGATTGTTCGAGT-TTCATACTCTTTAGAGAGAGAAT---GAGC-GAAC
1 ACGATTGTTGAAGATTGTTCGAGTCTT-ATACTCTCT-GA-AGA-AATAGGGAGCAG-AC
* * ** * * *
1048696 CCG-TAAGAAGAAGATT-TTTGAGT-TCTATACTCCCTGAAGAAAGAGGGAGC-GA-
1 ACGAT-TGTTGAAGATTGTTCGAGTCT-TATACTCTCTGAAGAAATAGGGAGCAGAC
* * **
1048748 ACCCA--GTTGAAGA-TGTTCGAGT-TCTATACTCCCT-AGAGAAAGGGGGAGC-GAAC
1 A-CGATTGTTGAAGATTGTTCGAGTCT-TATACTCTCTGA-AGAAATAGGGAGCAG-AC
* * *
1048801 CCG--T-TTGAAGAATATG-TCTGAGT-TCCATACTCCCT-AGAGAAATAGGGAGC-GA-
1 ACGATTGTTGAAG-AT-TGTTC-GAGTCT-TATACTCTCTGA-AGAAATAGGGAGCAGAC
* * ** *
1048853 ACCCATTTGTTGAAGATTG-T-GGGTCTTATACTCTCTGAAGGTATAGGGGGCAGAC
1 A-CGA-TTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGAC
* * * * *
1048908 GCGATTGATGAAGATTG-T-GGGTCTTATACTCTCTGAAGATATAGGGGGCAGAC
1 ACGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGAC
* * * *
1048961 ACAATCGTTGAAGATCGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGAC
1 ACGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGAC
* * * * * * *
1049016 GCGATTGATGAAGATTG-T-GGGTATTATACTCTCTGAAGATACAGGGGGCAGAC
1 ACGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGAC
* *
1049069 ACGATCGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGAC
1 ACGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGAC
* * * * *
1049124 GCGATTGATGAAGATT-AT-GGGTCTTATACTCTCTGAA-AATATAGGGGGCAGAC
1 ACGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAA-ATAGGGAGCAGAC
* * *
1049177 ACGATCGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGAGG-GTAGAT
1 ACGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAG-GGAGCAGAC
* * * *
1049232 GCGATTGATGAAGATTG-T-GGGTCTTATACTCTCTGAAGAAATAGGGGGCAGAC
1 ACGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGAC
* *
1049285 ACGATTGTTAAAGATTATTCGAGT
1 ACGATTGTTGAAGATTGTTCGAGT
1049309 TCCATACTCC
Statistics
Matches: 600, Mismatches: 81, Indels: 84
0.78 0.11 0.11
Matches are distributed among these distances:
50 2 0.00
51 45 0.08
52 10 0.02
53 219 0.37
54 66 0.11
55 237 0.40
56 9 0.01
57 9 0.01
58 3 0.00
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.27
Consensus pattern (55 bp):
ACGATTGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGAC
Found at i:1048746 original size:54 final size:53
Alignment explanation
Indices: 1048688--1048856 Score: 200
Period size: 54 Copynumber: 3.2 Consensus size: 53
1048678 GAGAGAGAAT
*
1048688 GAGCGAACCCGTAAGAAGAAGATTTTTGAGTTCTATACTCCCT-GAAGAAAGAGG
1 GAGCGAACCCGT-AGAAGAAGATGTTTGAGTTCTATACTCCCTAG-AGAAAGAGG
** * *
1048742 GAGCGAACCC--AGTTGAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGGGG
1 GAGCGAACCCGTAGAAGAAGATGTTTGAGTTCTATACTCCCTAGAGAAAGAGG
* * * * *
1048793 GAGCGAACCCGTTTGAAGAATATGTCTGAGTTCCATACTCCCTAGAGAAATAGG
1 GAGCGAACCCG-TAGAAGAAGATGTTTGAGTTCTATACTCCCTAGAGAAAGAGG
1048847 GAGCGAACCC
1 GAGCGAACCC
1048857 ATTTGTTGAA
Statistics
Matches: 97, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
51 44 0.45
52 1 0.01
54 52 0.54
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.21
Consensus pattern (53 bp):
GAGCGAACCCGTAGAAGAAGATGTTTGAGTTCTATACTCCCTAGAGAAAGAGG
Found at i:1048786 original size:105 final size:107
Alignment explanation
Indices: 1048595--1048872 Score: 289
Period size: 105 Copynumber: 2.6 Consensus size: 107
1048585 CACGATTGTT
* * *
1048595 GAAGATTGTTCGAG-TCTCATACTCTCTGAAGAAATAGGGAGC-AGACACGATTGTTGAAGATTG
1 GAAGATT-TTTGAGTTCT-ATACTCCCTGAAGAAATAGGGAGCGA-AC-CCA-TGTTGAAGATTG
** * *
1048658 TTCGAGTTTCATACTCTTTAGAGAGAGAATGAGCGAACCCGTAAGAA
61 TTCGAGTTTCATACTCCCTAGAGAAAGAAGGAGCGAACCCGTAAGAA
*
1048705 GAAGATTTTTGAGTTCTATACTCCCTGAAGAAAGAGGGAGCGAACCCA-GTTGAAGA-TGTTCGA
1 GAAGATTTTTGAGTTCTATACTCCCTGAAGAAATAGGGAGCGAACCCATGTTGAAGATTGTTCGA
** **
1048768 G-TTCTATACTCCCTAGAGAAAGGGGGAGCGAACCCGTTTGAA
66 GTTTC-ATACTCCCTAGAGAAAGAAGGAGCGAACCCGTAAGAA
* * * *
1048810 GAATATGTCTGAGTTCCATACTCCCT-AGAGAAATAGGGAGCGAACCCATTTGTTGAAGATTGT
1 GAAGATTTTTGAGTTCTATACTCCCTGA-AGAAATAGGGAGCGAACCCA--TGTTGAAGATTGT
1048873 GGGTCTTATA
Statistics
Matches: 143, Mismatches: 17, Indels: 17
0.81 0.10 0.10
Matches are distributed among these distances:
104 4 0.03
105 78 0.55
106 8 0.06
108 10 0.07
109 32 0.22
110 11 0.08
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (107 bp):
GAAGATTTTTGAGTTCTATACTCCCTGAAGAAATAGGGAGCGAACCCATGTTGAAGATTGTTCGA
GTTTCATACTCCCTAGAGAAAGAAGGAGCGAACCCGTAAGAA
Found at i:1048900 original size:53 final size:53
Alignment explanation
Indices: 1048863--1049300 Score: 561
Period size: 53 Copynumber: 8.2 Consensus size: 53
1048853 ACCCATTTGT
*
1048863 TGAAGATTGTGGGTCTTATACTCTCTGAAGGTATAGGGGGCAGACGCGATTGA
1 TGAAGATTGTGGGTCTTATACTCTCTGAAGATATAGGGGGCAGACGCGATTGA
* * * *
1048916 TGAAGATTGTGGGTCTTATACTCTCTGAAGATATAGGGGGCAGACACAATCGT
1 TGAAGATTGTGGGTCTTATACTCTCTGAAGATATAGGGGGCAGACGCGATTGA
* * *
1048969 TGAAGATCGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA
1 TGAAGATTG-T-GGGTCTTATACTCTCTGAAGATATAGGGGGCAGACGCGATTGA
* * * * *
1049024 TGAAGATTGTGGGTATTATACTCTCTGAAGATACAGGGGGCAGACACGATCGT
1 TGAAGATTGTGGGTCTTATACTCTCTGAAGATATAGGGGGCAGACGCGATTGA
* *
1049077 TGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA
1 TGAAGATTG-T-GGGTCTTATACTCTCTGAAGATATAGGGGGCAGACGCGATTGA
* * * * *
1049132 TGAAGATTATGGGTCTTATACTCTCTGAAAATATAGGGGGCAGACACGATCGT
1 TGAAGATTGTGGGTCTTATACTCTCTGAAGATATAGGGGGCAGACGCGATTGA
* * * * *
1049185 TGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGAGGGTAGATGCGATTGA
1 TGAAGATTG-T-GGGTCTTATACTCTCTGAAGATATAGGGGGCAGACGCGATTGA
* * *
1049240 TGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATTGT
1 TGAAGATTGTGGGTCTTATACTCTCTGAAGATATAGGGGGCAGACGCGATTGA
*
1049293 TAAAGATT
1 TGAAGATT
1049301 ATTCGAGTTC
Statistics
Matches: 328, Mismatches: 51, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
53 190 0.58
54 6 0.02
55 132 0.40
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.28
Consensus pattern (53 bp):
TGAAGATTGTGGGTCTTATACTCTCTGAAGATATAGGGGGCAGACGCGATTGA
Found at i:1049317 original size:108 final size:108
Alignment explanation
Indices: 1048538--1049308 Score: 758
Period size: 108 Copynumber: 7.2 Consensus size: 108
1048528 CCAACGATTA
* * * * *
1048538 TTGAAGATTGTTCGAGCCTCATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTTGAAGATTG
1 TTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGATGAAGATTG
* * * *
1048603 TTCGAGTCTCATACTCTCTGAAGAAATAGGGAGCAGACACGATTG
66 -T-GGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATCG
* * * * * *
1048648 TTGAAGATTGTTCGAGT-TTCATACTCTTTAGAGAGAGAAT-GAGCG-A-ACCCG-TAAGAAGAA
1 TTGAAGATTGTTCGAGTCTT-ATACTCTCT-GA-AGA-AATAGGGGGCAGACGCGAT-TGATGAA
* * * * * *
1048708 GATTTTTGAGT-TCTATACTCCCTGAAGAAAGAGGGAGC-GA-AC--CCAG
61 GA-TTGTGGGTCT-TATACTCTCTGAAGAAATAGGGGGCAGACACGATC-G
* * * * * *
1048754 TTGAAGA-TGTTCGAGT-TCTATACTCCCT-AGAGAAA-GGGGGAGC-GAACCCGTTTGAAGAAT
1 TTGAAGATTGTTCGAGTCT-TATACTCTCTGA-AGAAATAGGGG-GCAG-ACGCGATTGATGAAG
* * * * * * *
1048814 ATGTCTGAGT-TCCATACTCCCT-AGAGAAATAGGGAGC-GA-ACCCATTTG
62 AT-TGTGGGTCT-TATACTCTCTGA-AGAAATAGGGGGCAGACA-CGA-TCG
* **
1048862 TTGAAGATTG-T-GGGTCTTATACTCTCTGAAGGTATAGGGGGCAGACGCGATTGATGAAGATTG
1 TTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGATGAAGATTG
* *
1048925 TGGGTCTTATACTCTCTGAAGATATAGGGGGCAGACACAATCG
66 TGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATCG
*
1048968 TTGAAGATCGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGATGAAGATTG
1 TTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGATGAAGATTG
* * *
1049033 TGGGTATTATACTCTCTGAAGATACAGGGGGCAGACACGATCG
66 TGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATCG
*
1049076 TTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGATGAAGATTA
1 TTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGATGAAGATTG
1049141 TGGGTCTTATACTCTCTGAA-AATATAGGGGGCAGACACGATCG
66 TGGGTCTTATACTCTCTGAAGAA-ATAGGGGGCAGACACGATCG
* * *
1049184 TTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGAGGGTAGATGCGATTGATGAAGATTG
1 TTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGATGAAGATTG
*
1049249 TGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATTG
66 TGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATCG
* *
1049292 TTAAAGATTATTCGAGT
1 TTGAAGATTGTTCGAGT
1049309 TCCATACTCC
Statistics
Matches: 565, Mismatches: 62, Indels: 70
0.81 0.09 0.10
Matches are distributed among these distances:
102 4 0.01
103 6 0.01
104 2 0.00
105 61 0.11
106 46 0.08
107 40 0.07
108 325 0.58
109 32 0.06
110 35 0.06
111 5 0.01
112 6 0.01
113 3 0.01
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.27
Consensus pattern (108 bp):
TTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGATGAAGATTG
TGGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATCG
Found at i:1051515 original size:24 final size:25
Alignment explanation
Indices: 1051469--1051520 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 25
1051459 TCCCGTGACC
*
1051469 AAAACGACGTCGCTTTAGAGTGT-T
1 AAAACGACGGCGCTTTAGAGTGTAT
*
1051493 AAAACGACGGCG-TTTAAGGGTGTAT
1 AAAACGACGGCGCTTT-AGAGTGTAT
1051518 AAA
1 AAA
1051521 GCGGCGTCGT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 3 0.12
24 17 0.71
25 4 0.17
ACGTcount: A:0.35, C:0.13, G:0.27, T:0.25
Consensus pattern (25 bp):
AAAACGACGGCGCTTTAGAGTGTAT
Found at i:1052873 original size:15 final size:15
Alignment explanation
Indices: 1052855--1052897 Score: 68
Period size: 15 Copynumber: 2.8 Consensus size: 15
1052845 AGTTCATTAA
*
1052855 ATTAATTTATAAAAT
1 ATTAAATTATAAAAT
1052870 ATTAAATTATAAAAT
1 ATTAAATTATAAAAT
1052885 ATTAAATGTATAA
1 ATTAAAT-TATAA
1052898 TTATAAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
15 21 0.81
16 5 0.19
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (15 bp):
ATTAAATTATAAAAT
Found at i:1056701 original size:28 final size:28
Alignment explanation
Indices: 1056664--1056728 Score: 130
Period size: 28 Copynumber: 2.3 Consensus size: 28
1056654 TCTTTGTTTA
1056664 AAAAAATATTACGAAATTTAATTCATTT
1 AAAAAATATTACGAAATTTAATTCATTT
1056692 AAAAAATATTACGAAATTTAATTCATTT
1 AAAAAATATTACGAAATTTAATTCATTT
1056720 AAAAAATAT
1 AAAAAATAT
1056729 ATGATAATGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.54, C:0.06, G:0.03, T:0.37
Consensus pattern (28 bp):
AAAAAATATTACGAAATTTAATTCATTT
Found at i:1057304 original size:24 final size:24
Alignment explanation
Indices: 1057260--1057306 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
1057250 AGTACTAAAC
*
1057260 ATATAATTATAAATTAGTTAAAAA
1 ATATAATTATAAATTAATTAAAAA
* *
1057284 ATATAATTGTAATTTAATTAAAA
1 ATATAATTATAAATTAATTAAAA
1057307 TACAAAATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.40
Consensus pattern (24 bp):
ATATAATTATAAATTAATTAAAAA
Found at i:1059830 original size:9 final size:9
Alignment explanation
Indices: 1059816--1059845 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
1059806 ACTAAAAACT
1059816 TTTGAGTTA
1 TTTGAGTTA
1059825 TTTGAGTTA
1 TTTGAGTTA
1059834 TTTGAGTTA
1 TTTGAGTTA
1059843 TTT
1 TTT
1059846 AAATATCTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.60
Consensus pattern (9 bp):
TTTGAGTTA
Found at i:1060958 original size:2 final size:2
Alignment explanation
Indices: 1060951--1060988 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
1060941 TTAATTCTTG
1060951 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1060989 TATGCTTAGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1062246 original size:60 final size:60
Alignment explanation
Indices: 1062117--1062257 Score: 210
Period size: 60 Copynumber: 2.4 Consensus size: 60
1062107 CCTTCGTATT
* * * *
1062117 GTGCAGATAAAACGGTTGATGGTGAGATAAAGGAGTTGAGACAAGATAAGGGCAAACGAC
1 GTGCAGATGATACGGTTGATGGTGAGATAAAGGAGTTGAGACAAGACAAGGGCAAACAAC
* *
1062177 GTGCAGATGATACGGTTGATGGTGAGATAAAGGAGTTGAGACAAGACAAGGGTAAACAAT
1 GTGCAGATGATACGGTTGATGGTGAGATAAAGGAGTTGAGACAAGACAAGGGCAAACAAC
* *
1062237 GTGCTGATGATACAGTTGATG
1 GTGCAGATGATACGGTTGATG
1062258 ATAAGAAAAA
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
60 73 1.00
ACGTcount: A:0.37, C:0.09, G:0.33, T:0.21
Consensus pattern (60 bp):
GTGCAGATGATACGGTTGATGGTGAGATAAAGGAGTTGAGACAAGACAAGGGCAAACAAC
Found at i:1066334 original size:22 final size:22
Alignment explanation
Indices: 1066306--1066347 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
1066296 GTTGAGAGAA
1066306 GTTGAGAGAAAAAGGTGTTGCC
1 GTTGAGAGAAAAAGGTGTTGCC
*
1066328 GTTGAGAGAAGAAGGTGTTG
1 GTTGAGAGAAAAAGGTGTTG
1066348 TCATGAGAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.31, C:0.05, G:0.40, T:0.24
Consensus pattern (22 bp):
GTTGAGAGAAAAAGGTGTTGCC
Found at i:1066356 original size:21 final size:22
Alignment explanation
Indices: 1066308--1066360 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
1066298 TGAGAGAAGT
* *
1066308 TGAGAGAAAAAGGTGTTGCCGT
1 TGAGAGAAGAAGGTGTTGCCGA
*
1066330 TGAGAGAAGAAGGTGTTGTC-A
1 TGAGAGAAGAAGGTGTTGCCGA
1066351 TGAGAGAAGA
1 TGAGAGAAGA
1066361 GAAGAAGGTG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 10 0.36
22 18 0.64
ACGTcount: A:0.36, C:0.06, G:0.38, T:0.21
Consensus pattern (22 bp):
TGAGAGAAGAAGGTGTTGCCGA
Found at i:1066380 original size:26 final size:26
Alignment explanation
Indices: 1066332--1066382 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
1066322 GTTGCCGTTG
* *
1066332 AGAGAAGAAGGTGTTGTCATGAGAGA
1 AGAGAAGAAGGTGATGCCATGAGAGA
*
1066358 AGAGAAGAAGGTGATGCCGTGAGAG
1 AGAGAAGAAGGTGATGCCATGAGAG
1066383 TGCTAATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.37, C:0.06, G:0.41, T:0.16
Consensus pattern (26 bp):
AGAGAAGAAGGTGATGCCATGAGAGA
Found at i:1082362 original size:322 final size:322
Alignment explanation
Indices: 1081768--1082373 Score: 988
Period size: 322 Copynumber: 1.9 Consensus size: 322
1081758 TCATCTTGGC
1081768 TAAAAAATTATTAGATTAAATAAATAAAAATTAAAAAAATATCATCTAATAAGGTAGTTCTAAAT
1 TAAAAAATTATTAGATTAAATAAATAAAAATTAAAAAAATATCATCTAATAAGGTAGTTCTAAAT
** *
1081833 ATGAAAAGGAATCAAATCTACGGCCGTTTATGAGCTTTGAAAAAAAAAACAGAATGTTGAAATTC
66 ACAAAAAGGAATCAAATCTACAGCCGTTTATGAGCTTTG-AAAAAAAAACAGAATGTTGAAATTC
*
1081898 CATAAATACCTCTTTTGAGAAGGTTGTTCGAAGACGATGATCGGAGAAAAGCAGCTGATGAAGAA
130 CATAAATACCTCTTTTGAGAAGCTTGTTCGAAGACGATGATCGGAGAAAAGCAGCTGATGAAGAA
1081963 AACGGCCAAATGAAGTTCCTTGGGTTGCAGAAGAGCCGCTATTCACTCACCTGAACTTAAACTAA
195 AACGGCCAAATGAAGTTCCTTGGGTTGCAGAAGAGCCGCTATTCACTCACCTGAACTTAAACTAA
* *
1082028 GTTTCGCCTACAACACAGAGGAAAGCAGTGCGAAAGGTAACATGTATCATCATCTTATTTGAT
260 GCTTCACCTACAACACAGAGGAAAGCAGTGCGAAAGGTAACATGTATCATCATCTTATTTGAT
* * *
1082091 TAAAAATTTATTA-ACTTAAATAAATAAAAATTAAGAAAATATCATCTAATCAGGTAGTTCTAAA
1 TAAAAAATTATTAGA-TTAAATAAATAAAAATTAAAAAAATATCATCTAATAAGGTAGTTCTAAA
* * *
1082155 TACAAAAAGGAATCTATTCTACAGCCGTTTATGAGCTTTG-AGAAAAAA-AGAATGGTT-AAATT
65 TACAAAAAGGAATCAAATCTACAGCCGTTTATGAGCTTTGAAAAAAAAACAGAAT-GTTGAAATT
*
1082217 CCATAAATACCTCTTTTGAGAAGCTTGTTCGAAGACGATGATCTCGGAGAGAAGCAGCTGATGAA
129 CCATAAATACCTCTTTTGAGAAGCTTGTTCGAAGACGATGA--TCGGAGAAAAGCAGCTGATGAA
* *
1082282 GAAAACGGCCAAATGAAGTTCCTTGGTTTGCAGAAGAGCCGCTATTCACTCACCT-ATATTTAAA
192 GAAAACGGCCAAATGAAGTTCCTTGGGTTGCAGAAGAGCCGCTATTCACTCACCTGA-ACTTAAA
1082346 CTAAGCTTCACCTACAACACAGAGGAAA
256 CTAAGCTTCACCTACAACACAGAGGAAA
1082374 TTTCTGGGAA
Statistics
Matches: 263, Mismatches: 15, Indels: 11
0.91 0.05 0.04
Matches are distributed among these distances:
320 50 0.19
321 11 0.04
322 108 0.41
323 94 0.36
ACGTcount: A:0.41, C:0.16, G:0.17, T:0.26
Consensus pattern (322 bp):
TAAAAAATTATTAGATTAAATAAATAAAAATTAAAAAAATATCATCTAATAAGGTAGTTCTAAAT
ACAAAAAGGAATCAAATCTACAGCCGTTTATGAGCTTTGAAAAAAAAACAGAATGTTGAAATTCC
ATAAATACCTCTTTTGAGAAGCTTGTTCGAAGACGATGATCGGAGAAAAGCAGCTGATGAAGAAA
ACGGCCAAATGAAGTTCCTTGGGTTGCAGAAGAGCCGCTATTCACTCACCTGAACTTAAACTAAG
CTTCACCTACAACACAGAGGAAAGCAGTGCGAAAGGTAACATGTATCATCATCTTATTTGAT
Found at i:1083937 original size:36 final size:36
Alignment explanation
Indices: 1083895--1083973 Score: 115
Period size: 36 Copynumber: 2.2 Consensus size: 36
1083885 GCCGAATTAA
1083895 ACGGGGACGA-AGAAAAACCGTTTATGTTAAACGGGG
1 ACGGGGACGAGA-AAAAACCGTTTATGTTAAACGGGG
* * *
1083931 ATGGGGATGGGAAAAAACCGTTTATGTTAAACGGGG
1 ACGGGGACGAGAAAAAACCGTTTATGTTAAACGGGG
1083967 ACGGGGA
1 ACGGGGA
1083974 AGGGGACGGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 37 0.97
37 1 0.03
ACGTcount: A:0.34, C:0.11, G:0.37, T:0.18
Consensus pattern (36 bp):
ACGGGGACGAGAAAAAACCGTTTATGTTAAACGGGG
Found at i:1084086 original size:34 final size:34
Alignment explanation
Indices: 1084048--1084122 Score: 91
Period size: 34 Copynumber: 2.2 Consensus size: 34
1084038 TTATATATAT
1084048 ATATATATATTAATAAATT-TA-ATTTAAATTAAAA
1 ATATATATA-TAAT-AATTATATATTTAAATTAAAA
* * *
1084082 ATATATATATAATATTTATATATTTAATTTAAAT
1 ATATATATATAATAATTATATATTTAAATTAAAA
1084116 ATATATA
1 ATATATA
1084123 CCCGGCCCGA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
32 3 0.08
33 6 0.17
34 27 0.75
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (34 bp):
ATATATATATAATAATTATATATTTAAATTAAAA
Found at i:1086967 original size:141 final size:141
Alignment explanation
Indices: 1086800--1087068 Score: 342
Period size: 141 Copynumber: 1.9 Consensus size: 141
1086790 TAAGGAATGC
* * * * * *
1086800 GGAAGACTCTTGATAGGATTCCAGGAAAGATCAAGAATCTTGAGTTCATTCATAT-CATCGAAGA
1 GGAAGACTCTTGATAGGATTCAAGGAAAGATCAAGAACCTTAAGTGCATCCATATGC-TCGAAAA
* * *
1086864 AGCTTTCTGGAATACTTTCTATACAACAATCAGAGAACAACAATGTTGTGAGCCCGAGACACTTC
65 AGCCTTCTGGAATACTTACTATACAACAATCAGACAACAACAATGTTGTGAGCCCGAGACACTTC
1086929 GACAAGGAAATT
130 GACAAGGAAATT
* * *
1086941 GGAAGACTCTTGATAGGGTTGAAGGAAAGATCAAGAACCTTAAGTGCATCCATATGCTTGAAAAA
1 GGAAGACTCTTGATAGGATTCAAGGAAAGATCAAGAACCTTAAGTGCATCCATATGCTCGAAAAA
* *** * * * *
1087006 TCCTTCTGGAATACTTACTATATTGCACTGAGACAACAACAATGTTGTGAGCCTGGGACACTT
66 GCCTTCTGGAATACTTACTATACAACAATCAGACAACAACAATGTTGTGAGCCCGAGACACTT
1087069 TGGGGGTGAC
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
141 106 0.99
142 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (141 bp):
GGAAGACTCTTGATAGGATTCAAGGAAAGATCAAGAACCTTAAGTGCATCCATATGCTCGAAAAA
GCCTTCTGGAATACTTACTATACAACAATCAGACAACAACAATGTTGTGAGCCCGAGACACTTCG
ACAAGGAAATT
Found at i:1099772 original size:18 final size:20
Alignment explanation
Indices: 1099735--1099777 Score: 72
Period size: 18 Copynumber: 2.2 Consensus size: 20
1099725 AAGTTCTCTC
1099735 TTTTATTTTCAAGTTTTTAT
1 TTTTATTTTCAAGTTTTTAT
1099755 TTTTATTTT-AAG-TTTTAT
1 TTTTATTTTCAAGTTTTTAT
1099773 TTTTA
1 TTTTA
1099778 AACATGCTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 11 0.48
19 3 0.13
20 9 0.39
ACGTcount: A:0.21, C:0.02, G:0.05, T:0.72
Consensus pattern (20 bp):
TTTTATTTTCAAGTTTTTAT
Found at i:1104341 original size:20 final size:20
Alignment explanation
Indices: 1104318--1104359 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
1104308 TTTATTTTAA
*
1104318 TTCTATTCAATTTAGTTGTG
1 TTCTATTCAATTTAGTCGTG
1104338 TTCTATTCAATTTAGTCGTG
1 TTCTATTCAATTTAGTCGTG
1104358 TT
1 TT
1104360 GCGGCTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.19, C:0.12, G:0.14, T:0.55
Consensus pattern (20 bp):
TTCTATTCAATTTAGTCGTG
Found at i:1105601 original size:23 final size:23
Alignment explanation
Indices: 1105557--1105610 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
1105547 AAATAGATGA
* *
1105557 TAAACGAACATTTTAGAGAACGC
1 TAAACGAACATGTTAGAAAACGC
1105580 TAAACGAACATGTT-GATAAACGC
1 TAAACGAACATGTTAGA-AAACGC
*
1105603 AAAACGAA
1 TAAACGAA
1105611 TATATTCGCG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 2 0.07
23 25 0.93
ACGTcount: A:0.48, C:0.17, G:0.17, T:0.19
Consensus pattern (23 bp):
TAAACGAACATGTTAGAAAACGC
Found at i:1106928 original size:453 final size:453
Alignment explanation
Indices: 1106082--1106981 Score: 1480
Period size: 453 Copynumber: 2.0 Consensus size: 453
1106072 GGTCTTATCC
*
1106082 GAACTGAAAGAGAAAGATTTGCAGATGCAGATGGTGGGACATTATCAAGTTTGGGAAGATTAAGG
1 GAACTGAAAGAGAAAGATTTGCAGATGCAGATGGTGGGACATTATCAAGTTTGGGAAGATTAAGA
* * ***
1106147 CCCATCCTCTTTAATTTTGGACAGTCTACAATCCCAATTATTCCAAGAGAATCACAAACCAGTAC
66 CCCATCCTCTTTAATTTTGGACAGTATACAATCCCAAATACGACAAGAGAATCACAAACCAGTAC
* *
1106212 TCCACCAGCACTGCAAATGTTCTTCAATTCCGGTAGATCCCCCAAACTCAATAGCCCTAATTGTG
131 TCCACCAGCACTGCAAATGCTCTTCAATTCCGGTAGATCCCCCAAACACAATAGCCCTAATTGTG
*
1106277 GAAGATGAAACTCCGTGATAACCATTCCTCTTTCCTCCGTTTCAACTTCTGATGTTATTATTTCC
196 GAAGATGAAACTCCGTGATAACCATTCCTCTTTCCTCCGGTTCAACTTCTGATGTTATTATTTCC
** ** *
1106342 TCCAATTGCTTACAACTTCTGACACTGAGCATTTGTAAATTTGGCGGCACACAGTTTGGGGAGAA
261 TCCAATTGCTTACAACCACCAACACTAAGCATTTGTAAATTTGGCGGCACACAGTTTGGGGAGAA
* *
1106407 CAACTTTTTCATATTCCCACAATCATTTATATAAAGAGATTTAAGAGATGAAAAGGAGGAAAGTG
326 CAACTTTTTCATATTCCCACAATCATTTATATAAAGACATATAAGAGATGAAAAGGAGGAAAGTG
* *
1106472 AGAAGAGGATAAACCTGGAGAAAAGCGGGTATTCTTCACTGCAATTAACATTGCAATACTCCT
391 AGAAGAGGATAAACCTGGAGAAAAGCGGGTATTCCTCACTGCAATCAACATTGCAATACTCCT
1106535 GAACTGAAAGAGAAAGATTTGCAGATGCAGATGGTGGGACATTATCAAGTTTGGGAAGATTAAGA
1 GAACTGAAAGAGAAAGATTTGCAGATGCAGATGGTGGGACATTATCAAGTTTGGGAAGATTAAGA
**
1106600 CCCATCCTCTTTAATTTTGGACAGTATACAATCTGAAATACGACAAGAGAATCACAAACCAGTAC
66 CCCATCCTCTTTAATTTTGGACAGTATACAATCCCAAATACGACAAGAGAATCACAAACCAGTAC
** * * * *
1106665 TCCACCAGCACTGCAAATGCTCTTCAATTCCGGTAGA-CCATTC-AACAACAATTGTCGTAGTTG
131 TCCACCAGCACTGCAAATGCTCTTCAATTCCGGTAGATCC-CCCAAAC-ACAATAGCCCTAATTG
1106728 TGGAAGATGAAACTCCGTGATAACCATTCCTCTTTCCTCCGGTTCAACTTCTGATGTTATTATTT
194 TGGAAGATGAAACTCCGTGATAACCATTCCTCTTTCCTCCGGTTCAACTTCTGATGTTATTATTT
* * *
1106793 CCTCCAATTGCTTACACCCACCAACTCTAAGCCTTTGTAAATTTGGCGGCACACAGTTTGGGGAG
259 CCTCCAATTGCTTACAACCACCAACACTAAGCATTTGTAAATTTGGCGGCACACAGTTTGGGGAG
* *
1106858 AACAACTTTTTCATATTCCCACAATCTTTTATATGAAGACATATAAGAGATGAAAAGGAGGAAAG
324 AACAACTTTTTCATATTCCCACAATCATTTATATAAAGACATATAAGAGATGAAAAGGAGGAAAG
*
1106923 TGAGAAGAGGATAAACCTGGAGAAAAGTGGGTATTCCTCACTGCAATCAACATTGCAAT
389 TGAGAAGAGGATAAACCTGGAGAAAAGCGGGTATTCCTCACTGCAATCAACATTGCAAT
1106982 CCGTGATATG
Statistics
Matches: 413, Mismatches: 32, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
452 5 0.01
453 408 0.99
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.28
Consensus pattern (453 bp):
GAACTGAAAGAGAAAGATTTGCAGATGCAGATGGTGGGACATTATCAAGTTTGGGAAGATTAAGA
CCCATCCTCTTTAATTTTGGACAGTATACAATCCCAAATACGACAAGAGAATCACAAACCAGTAC
TCCACCAGCACTGCAAATGCTCTTCAATTCCGGTAGATCCCCCAAACACAATAGCCCTAATTGTG
GAAGATGAAACTCCGTGATAACCATTCCTCTTTCCTCCGGTTCAACTTCTGATGTTATTATTTCC
TCCAATTGCTTACAACCACCAACACTAAGCATTTGTAAATTTGGCGGCACACAGTTTGGGGAGAA
CAACTTTTTCATATTCCCACAATCATTTATATAAAGACATATAAGAGATGAAAAGGAGGAAAGTG
AGAAGAGGATAAACCTGGAGAAAAGCGGGTATTCCTCACTGCAATCAACATTGCAATACTCCT
Found at i:1107651 original size:141 final size:141
Alignment explanation
Indices: 1107437--1107705 Score: 380
Period size: 141 Copynumber: 1.9 Consensus size: 141
1107427 TAAGGAATGC
* *
1107437 GGAAGACTCTTGATAGGATTGGAGGAAAGATCAAGAACCTTAAGTGCATCCATATAATGGAAGAA
1 GGAAGACTCTTGATAGGATTGCAGGAAAGATCAAGAACCTTAAGTGCATCCATATAATGGAAAAA
* * * *
1107502 GCTTTCTGGAATACTTTCTATAC-GACAACGACACAACAACAATGTTGTGAGCCC-GGGACACTT
66 GCCTTCTGGAATACTCTCTAAACAG-CAACCACACAACAACAATGTTGTGA-CCCTGGGACACTT
1107565 CGACAAGGAAATT
129 CGACAAGGAAATT
* * ** *
1107578 GGAAGACTCTTGATAGGATTTCCGGAAAGATCAAGAACCTTAAGTGCATCCATATGCTTGAAAAA
1 GGAAGACTCTTGATAGGATTGCAGGAAAGATCAAGAACCTTAAGTGCATCCATATAATGGAAAAA
* * *
1107643 TCCTTCTGGAATACTCTCTAAACAGCAACCAGACAACAACAATGTTGTGACCCTGGGGCACTT
66 GCCTTCTGGAATACTCTCTAAACAGCAACCACACAACAACAATGTTGTGACCCTGGGACACTT
1107706 TGGGGGTGAC
Statistics
Matches: 112, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
140 3 0.03
141 108 0.96
142 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.23
Consensus pattern (141 bp):
GGAAGACTCTTGATAGGATTGCAGGAAAGATCAAGAACCTTAAGTGCATCCATATAATGGAAAAA
GCCTTCTGGAATACTCTCTAAACAGCAACCACACAACAACAATGTTGTGACCCTGGGACACTTCG
ACAAGGAAATT
Found at i:1112163 original size:317 final size:320
Alignment explanation
Indices: 1111549--1112311 Score: 1153
Period size: 317 Copynumber: 2.4 Consensus size: 320
1111539 TTAATTCGGT
* * * *
1111549 GGTAACATGTGTC-TTCATCTT-GTTGACTAAAAAATTATTAGA-TTAAATAAATAAAAATTAAG
1 GGTAACATGTATCATT-ATCTTATTTGATTAAAAATTTATTA-ACTTAAATAAATAAAAATTAAG
* * * * * * * *
1111611 AAAATATCCTCTAATAAAGTA-TTCTAAATATGAAAAGGAACCAAATCTACAGCCGTTTATGAGT
64 AAAATATCATCTAATCAGGTAGTTCTAAATA-CAAAAGGAATCTATTCTACAGCCGTTTATGAGC
*
1111675 TTTGAAGAAAAAAAAGGAATGTTGAAATCCCATAAATACCTCTTTTGAGAAGCTTGTTCGAAGAC
128 TTTGAAGAAAAAAAAGGAATGCTGAAATCCCATAAATACCTCTTTTGAGAAGCTTGTTCGAAGAC
* *
1111740 GGTGATCGGAGAGAAGCAGCTAGTGAAGAAAACGGCCAAATGAAGTTGCTGGTTTGCAGAAGAGC
193 GATGATCGGAGAGAAGCAGCTAGTGAAGAAAACGGCCAAATGAAGTTCCTGGTTTGCAGAAGAGC
*
1111805 CGCTATCACTCACCTGAACTTAAACTAAGCTTCGCCTACAACACAGAGGAAAGCAGTGCGAAA
258 CGCTATCACTCACCTGAACTTAAACTAAGCTTCGACTACAACACAGAGGAAAGCAGTGCGAAA
1111868 GGTAACATGTATCATTATCTTATTTGATTAAAAATTTATTAACTTAAATAAAT-AAAATTAAGAA
1 GGTAACATGTATCATTATCTTATTTGATTAAAAATTTATTAACTTAAATAAATAAAAATTAAGAA
1111932 AATATCATCTAATCAGGTAGTTCTAAATACAAGAAGGAATCTATTCTACAGCCGTTTATGAGCTT
66 AATATCATCTAATCAGGTAGTTCTAAATACAA-AAGGAATCTATTCTACAGCCGTTTATGAGCTT
* * *
1111997 TG-A-AAAAAACA-GAATGCTGAAATTCCATAAATACCTCTTTTGAGAAGGTTGTTCGAAGACGA
130 TGAAGAAAAAAAAGGAATGCTGAAATCCCATAAATACCTCTTTTGAGAAGCTTGTTCGAAGACGA
1112059 TGATCGGAGAGAAGCAGCT-GATGAAGAAAACGGCCAAATGAAGTTCCTTGGTTTGCAGAAGAGC
195 TGATCGGAGAGAAGCAGCTAG-TGAAGAAAACGGCCAAATGAAGTTCC-TGGTTTGCAGAAGAGC
*
1112123 CGCTATTCACTCACCTGAGCTTAAA-TAAGCTTC-ACTACAACACAGAGGAAAGCAGTGCGAAA
258 CGCTA-TCACTCACCTGAACTTAAACTAAGCTTCGACTACAACACAGAGGAAAGCAGTGCGAAA
*
1112185 GGT-A-A--TATCATCATCTTATTTGATTAAAAATTTATTAACTTAAATAAATAAAAATTAAG-A
1 GGTAACATGTATCATTATCTTATTTGATTAAAAATTTATTAACTTAAATAAATAAAAATTAAGAA
1112245 AATATCATCTAATCAGGTAGTTCTAAATACAAAAAGGAATCTATTCTACAGCCGTTTATGAGCTT
66 AATATCATCTAATCAGGTAGTTCTAAATAC-AAAAGGAATCTATTCTACAGCCGTTTATGAGCTT
1112310 TG
130 TG
Statistics
Matches: 413, Mismatches: 21, Indels: 26
0.90 0.05 0.06
Matches are distributed among these distances:
313 108 0.26
314 11 0.03
315 1 0.00
316 2 0.00
317 122 0.30
318 36 0.09
319 66 0.16
320 67 0.16
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.28
Consensus pattern (320 bp):
GGTAACATGTATCATTATCTTATTTGATTAAAAATTTATTAACTTAAATAAATAAAAATTAAGAA
AATATCATCTAATCAGGTAGTTCTAAATACAAAAGGAATCTATTCTACAGCCGTTTATGAGCTTT
GAAGAAAAAAAAGGAATGCTGAAATCCCATAAATACCTCTTTTGAGAAGCTTGTTCGAAGACGAT
GATCGGAGAGAAGCAGCTAGTGAAGAAAACGGCCAAATGAAGTTCCTGGTTTGCAGAAGAGCCGC
TATCACTCACCTGAACTTAAACTAAGCTTCGACTACAACACAGAGGAAAGCAGTGCGAAA
Done.