Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008709.1 Hibiscus syriacus cultivar Beakdansim tig00111758_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3030657
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 15 of 15
Found at i:2903596 original size:35 final size:37
Alignment explanation
Indices: 2903537--2903609 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 37
2903527 CTTAATATCG
*
2903537 AAAAATAAATAAATATTAATAATATGATATTTTTTTATA
1 AAAAATAAATAAATATTAATAATAT-ATA-ATTTTTATA
2903576 AAAAAT-AATAAA-ATT-A-AATATATAATTTTTATA
1 AAAAATAAATAAATATTAATAATATATAATTTTTATA
2903609 A
1 A
2903610 TATTTATTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
33 9 0.27
34 3 0.09
35 5 0.15
36 1 0.03
37 3 0.09
38 6 0.18
39 6 0.18
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.41
Consensus pattern (37 bp):
AAAAATAAATAAATATTAATAATATATAATTTTTATA
Found at i:2905071 original size:3 final size:3
Alignment explanation
Indices: 2905065--2905141 Score: 92
Period size: 3 Copynumber: 26.7 Consensus size: 3
2905055 TATTTTTTAT
*
2905065 TAA TAA TAA TAA TATA TAA T-A TAA TAA TAA -AA TAA TAA TAA TAG
1 TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
2905109 T-A TAAA TAA -AA TAA -AA TAA TAA TAA TAA TAA TA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
2905142 GAAAATGGAT
Statistics
Matches: 65, Mismatches: 2, Indels: 14
0.80 0.02 0.17
Matches are distributed among these distances:
2 9 0.14
3 51 0.78
4 5 0.08
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:2905146 original size:22 final size:22
Alignment explanation
Indices: 2905065--2905147 Score: 84
Period size: 22 Copynumber: 3.9 Consensus size: 22
2905055 TATTTTTTAT
*
2905065 TAATAATAATAATATATAAT-A
1 TAATAATAATAATATAAAATAA
*
2905086 TAATAATAA-AATA-ATAATAA
1 TAATAATAATAATATAAAATAA
* *
2905106 TAGT-ATAAATAAAATAAAATAA
1 TAATAAT-AATAATATAAAATAA
*
2905128 TAATAATAATAATAGAAAAT
1 TAATAATAATAATATAAAAT
2905148 GGATAAAAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
19 7 0.14
20 10 0.20
21 12 0.24
22 20 0.39
23 2 0.04
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.31
Consensus pattern (22 bp):
TAATAATAATAATATAAAATAA
Found at i:2905155 original size:31 final size:29
Alignment explanation
Indices: 2905066--2905147 Score: 89
Period size: 28 Copynumber: 2.9 Consensus size: 29
2905056 ATTTTTTATT
* *
2905066 AATAATAATAATATATAATATAATA-ATAA
1 AATAATAATAATA-ATAATAGAAAATATAA
* *
2905095 AATAATAATAATAGT-ATA-AATAAAATAA
1 AATAATAATAATAATAATAGAA-AATATAA
2905123 AATAATAATAATAATAATAGAAAAT
1 AATAATAATAATAATAATAGAAAAT
2905148 GGATAAAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
26 2 0.04
27 4 0.09
28 19 0.42
29 18 0.40
30 2 0.04
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (29 bp):
AATAATAATAATAATAATAGAAAATATAA
Found at i:2905980 original size:113 final size:112
Alignment explanation
Indices: 2905747--2906188 Score: 679
Period size: 113 Copynumber: 3.9 Consensus size: 112
2905737 TGGGATAGAA
* * *
2905747 TCGAGCAAAATGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTT-CATCTTCAGATGAGTTCT
1 TCGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCT
* *
2905811 TCTCATTATGAACACTTCTGGAAATGTTGATCCATCGAGTGATGAAT
66 TCTCATTATGAACTCTCCTGGAAATGTTGATCCATCGAGTGATGAAT
2905858 TCGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCT
1 TCGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCT
*
2905923 TCTCATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAAT
66 TCTCATTATGAACTCT-CCTGGAAATGTTGATCCATCGAGTGATGAAT
* * *
2905971 TCGAGCAAAATGTTGAATAAATTCTTCTCATTATGAACTTTTTCTTCCTTCTTCAGATGAGTTCT
1 TCGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCT
* * *
2906036 TCTCATTATGAACTCTACCTGGCAATGCTGATCCATCGAGTGATAAAT
66 TCTCATTATGAACTCT-CCTGGAAATGTTGATCCATCGAGTGATGAAT
* * * * *
2906084 TCGAGCAAAAGGTTGAACAAGTTCTTTTCATAATGAACTTCTTATTGCTTCTTCAGATGAGTTCT
1 TCGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCT
* * *
2906149 TCTCATTATGAACTCTTCTGGAAATGTTAATCCATTGAGT
66 TCTCATTATGAACTCTCCTGGAAATGTTGATCCATCGAGT
2906189 AATGGATTTA
Statistics
Matches: 305, Mismatches: 24, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
111 44 0.14
112 51 0.17
113 210 0.69
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (112 bp):
TCGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCT
TCTCATTATGAACTCTCCTGGAAATGTTGATCCATCGAGTGATGAAT
Found at i:2906582 original size:22 final size:22
Alignment explanation
Indices: 2906543--2906598 Score: 87
Period size: 22 Copynumber: 2.6 Consensus size: 22
2906533 AATAAAGCTT
*
2906543 TCATCTTT-AACAGAGAATATA
1 TCATCTTTGAAGAGAGAATATA
*
2906564 TCATCTTTGAAGAGAGAATCTA
1 TCATCTTTGAAGAGAGAATATA
2906586 TCATCTTTGAAGA
1 TCATCTTTGAAGA
2906599 ATGTAGATGT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (22 bp):
TCATCTTTGAAGAGAGAATATA
Found at i:2911587 original size:9 final size:9
Alignment explanation
Indices: 2911573--2911629 Score: 75
Period size: 8 Copynumber: 6.7 Consensus size: 9
2911563 CTTGATTCGA
2911573 TTTTTTTCC
1 TTTTTTTCC
*
2911582 TTTTTTTTC
1 TTTTTTTCC
*
2911591 ATTTTTT-C
1 TTTTTTTCC
2911599 TTTTTTTCC
1 TTTTTTTCC
2911608 -TTTTTTCC
1 TTTTTTTCC
2911616 TTTTTTT-C
1 TTTTTTTCC
2911624 TTTTTT
1 TTTTTT
2911630 CTTTCTTTCT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
8 22 0.51
9 21 0.49
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (9 bp):
TTTTTTTCC
Found at i:2911601 original size:17 final size:16
Alignment explanation
Indices: 2911574--2911633 Score: 84
Period size: 16 Copynumber: 3.6 Consensus size: 16
2911564 TTGATTCGAT
2911574 TTTTTTCCTTTTTTTTC
1 TTTTTT-CTTTTTTTTC
*
2911591 ATTTTTTCTTTTTTTCC
1 -TTTTTTCTTTTTTTTC
*
2911608 TTTTTTCCTTTTTTTC
1 TTTTTTCTTTTTTTTC
2911624 TTTTTTCTTT
1 TTTTTTCTTT
2911634 CTTTCTGATG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
16 23 0.61
17 9 0.24
18 6 0.16
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTTTTCTTTTTTTTC
Found at i:2911602 original size:16 final size:15
Alignment explanation
Indices: 2911583--2911639 Score: 78
Period size: 16 Copynumber: 3.6 Consensus size: 15
2911573 TTTTTTTCCT
2911583 TTTTTTTCATTTTTTC
1 TTTTTTTC-TTTTTTC
2911599 TTTTTTTCCTTTTTTCC
1 TTTTTTT-CTTTTTT-C
2911616 TTTTTTTCTTTTTTC
1 TTTTTTTCTTTTTTC
*
2911631 TTTCTTTCT
1 TTTTTTTCT
2911640 GATGAATGAG
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
15 9 0.24
16 20 0.53
17 9 0.24
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.81
Consensus pattern (15 bp):
TTTTTTTCTTTTTTC
Found at i:2911638 original size:8 final size:7
Alignment explanation
Indices: 2911584--2911639 Score: 58
Period size: 8 Copynumber: 7.1 Consensus size: 7
2911574 TTTTTTCCTT
2911584 TTTTTTC
1 TTTTTTC
2911591 ATTTTTTC
1 -TTTTTTC
2911599 TTTTTTTCC
1 -TTTTTT-C
2911608 TTTTTTCC
1 TTTTTT-C
2911616 TTTTTTTC
1 -TTTTTTC
2911624 TTTTTTC
1 TTTTTTC
2911631 TTTCTTTC
1 TTT-TTTC
2911639 T
1 T
2911640 GATGAATGAG
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
7 10 0.23
8 27 0.61
9 7 0.16
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (7 bp):
TTTTTTC
Found at i:2914607 original size:12 final size:12
Alignment explanation
Indices: 2914590--2914615 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
2914580 CTATGCAAAG
2914590 ATGCAAATACAA
1 ATGCAAATACAA
2914602 ATGCAAATACAA
1 ATGCAAATACAA
2914614 AT
1 AT
2914616 ACAACGATGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.15, G:0.08, T:0.19
Consensus pattern (12 bp):
ATGCAAATACAA
Found at i:2914616 original size:18 final size:19
Alignment explanation
Indices: 2914593--2914629 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 19
2914583 TGCAAAGATG
2914593 CAAATACAA-ATGCAAATA
1 CAAATACAACATGCAAATA
2914611 CAAATACAACGATGCAAAT
1 CAAATACAAC-ATGCAAAT
2914630 TGTGCAATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.53
20 8 0.47
ACGTcount: A:0.57, C:0.19, G:0.08, T:0.16
Consensus pattern (19 bp):
CAAATACAACATGCAAATA
Found at i:2914669 original size:13 final size:14
Alignment explanation
Indices: 2914653--2914706 Score: 67
Period size: 13 Copynumber: 3.9 Consensus size: 14
2914643 AGCAAACAAC
2914653 AAATGCAAAATG-A
1 AAATGCAAAATGCA
2914666 AAATGCAAAGATGCA
1 AAATGCAAA-ATGCA
*
2914681 AAATG-AAAATGTA
1 AAATGCAAAATGCA
2914694 AAGATGCAAAATG
1 AA-ATGCAAAATG
2914707 TGTTACTCAA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
13 15 0.42
14 9 0.25
15 12 0.33
ACGTcount: A:0.57, C:0.07, G:0.19, T:0.17
Consensus pattern (14 bp):
AAATGCAAAATGCA
Found at i:2914681 original size:8 final size:7
Alignment explanation
Indices: 2914653--2914706 Score: 67
Period size: 7 Copynumber: 7.7 Consensus size: 7
2914643 AGCAAACAAC
2914653 AAATGCA
1 AAATGCA
2914660 AAATG-A
1 AAATGCA
2914666 AAATGCA
1 AAATGCA
2914673 AAGATGCA
1 AA-ATGCA
2914681 AAATG-A
1 AAATGCA
*
2914687 AAATGTA
1 AAATGCA
2914694 AAGATGCA
1 AA-ATGCA
2914702 AAATG
1 AAATG
2914707 TGTTACTCAA
Statistics
Matches: 42, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
6 12 0.29
7 17 0.40
8 13 0.31
ACGTcount: A:0.57, C:0.07, G:0.19, T:0.17
Consensus pattern (7 bp):
AAATGCA
Found at i:2914681 original size:21 final size:21
Alignment explanation
Indices: 2914655--2914706 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
2914645 CAAACAACAA
2914655 ATGCAAAATGAAAATGCAAAG
1 ATGCAAAATGAAAATGCAAAG
*
2914676 ATGCAAAATGAAAATGTAAAG
1 ATGCAAAATGAAAATGCAAAG
2914697 ATGCAAAATG
1 ATGCAAAATG
2914707 TGTTACTCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.56, C:0.08, G:0.19, T:0.17
Consensus pattern (21 bp):
ATGCAAAATGAAAATGCAAAG
Found at i:2916881 original size:147 final size:143
Alignment explanation
Indices: 2916706--2917087 Score: 419
Period size: 147 Copynumber: 2.7 Consensus size: 143
2916696 TTTATTTTTA
2916706 TAAATAAGATATTTA-TTATTTAGAAATATCAGAAAATGACTTCTATGTGCTTTAAGACAGCACA
1 TAAATAAGATATTTATTTATTTAG-AATATCAGAAAATGACTTCTA-GTGCTTTAAGACAGCACA
2916770 TTTCTTAATATTAAAAAATAAATAAATATTAAT-A-AA-AT-ATTTCTATA-AAAATAATTAAAA
64 TTTCTTAATATTAAAAAATAAATAAATATTAATAATAAGATAATTT-TATATAAAA-AA-TAAAA
*
2916830 TAAATTTAATATATAATTT
126 -AAATTAAATATATAATTT
* * *
2916849 ATAAAAATAAGATATTTATTTATTTAAGAATATCATAAAATGACTTATAGGTGCTTTAAGACATC
1 -T--AAATAAGATATTTATTTATTT-AGAATATCAGAAAATGACTTCTA-GTGCTTTAAGACAGC
* ** * *
2916914 CCATTTCTTAATATCGAAAAATAAATAAATATTAATAATAAGATAATTTTTTATAAAAAATAATA
61 ACATTTCTTAATATTAAAAAATAAATAAATATTAATAATAAGATAATTTTATATAAAAAATAAAA
2916979 AAATTAAATATATAATTT
126 AAATTAAATATATAATTT
* * * * * *
2916997 T-TAT-A-ATATTTATTTATTTTA-AATACCAG-AATTGGACATCTAGTTGCTTTAAGACTG-TC
1 TAAATAAGATATTTATTTA-TTTAGAATATCAGAAAAT-GACTTCTAG-TGCTTTAAGACAGCAC
2917056 ATTTCTTAATATTAAAAAATAAATAAATATTA
63 ATTTCTTAATATTAAAAAATAAATAAATATTA
2917088 TTATTTAAAC
Statistics
Matches: 205, Mismatches: 21, Indels: 28
0.81 0.08 0.11
Matches are distributed among these distances:
140 35 0.17
141 23 0.11
142 12 0.06
143 4 0.02
144 3 0.01
146 14 0.07
147 73 0.36
148 20 0.10
149 6 0.03
150 7 0.03
151 8 0.04
ACGTcount: A:0.48, C:0.07, G:0.06, T:0.39
Consensus pattern (143 bp):
TAAATAAGATATTTATTTATTTAGAATATCAGAAAATGACTTCTAGTGCTTTAAGACAGCACATT
TCTTAATATTAAAAAATAAATAAATATTAATAATAAGATAATTTTATATAAAAAATAAAAAAATT
AAATATATAATTT
Found at i:2917350 original size:15 final size:15
Alignment explanation
Indices: 2917330--2917369 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
2917320 TTAACCGGTG
*
2917330 ATTAAAATATAAGTT
1 ATTAAAATATAAATT
2917345 ATTAAAATATAAATT
1 ATTAAAATATAAATT
2917360 ATTAAAATAT
1 ATTAAAATAT
2917370 GAGGGACTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (15 bp):
ATTAAAATATAAATT
Found at i:2918505 original size:3 final size:3
Alignment explanation
Indices: 2918499--2918585 Score: 92
Period size: 3 Copynumber: 29.3 Consensus size: 3
2918489 TTTTTTATTG
2918499 ATA ATA ATA ATA ATA ATAA ATA ATA CATA AT- ATA ATA ATA A-A ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA -ATA ATA ATA ATA ATA ATA ATA
* * *
2918544 ATA ATA ATA GT- ATAA ATA A-A ATA ATA CTA ATA AAA ATA ATA A
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
2918586 AAAACAAATG
Statistics
Matches: 71, Mismatches: 6, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
2 7 0.10
3 56 0.79
4 8 0.11
ACGTcount: A:0.67, C:0.02, G:0.01, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:2918528 original size:23 final size:24
Alignment explanation
Indices: 2918502--2918587 Score: 110
Period size: 23 Copynumber: 3.8 Consensus size: 24
2918492 TTTATTGATA
2918502 ATAATAATAATAAT-AAATAATAC
1 ATAATAATAATAATAAAATAATAC
2918525 ATAAT-ATAATAATAAAATAATA-
1 ATAATAATAATAATAAAATAATAC
*
2918547 ATAATAGT-ATAAATAAAATAATAC
1 ATAATAATAAT-AATAAAATAATAC
*
2918571 -TAATAAAAATAATAAAA
1 ATAATAATAATAATAAAA
2918588 AACAAATGGA
Statistics
Matches: 55, Mismatches: 3, Indels: 10
0.81 0.04 0.15
Matches are distributed among these distances:
22 15 0.27
23 38 0.69
24 2 0.04
ACGTcount: A:0.67, C:0.02, G:0.01, T:0.29
Consensus pattern (24 bp):
ATAATAATAATAATAAAATAATAC
Found at i:2920468 original size:47 final size:45
Alignment explanation
Indices: 2920386--2920518 Score: 169
Period size: 47 Copynumber: 2.9 Consensus size: 45
2920376 AAAATAATAT
*
2920386 AAAATATCTTACCATTTATCCCATAAGCTCATAAGCTTATTTTACC
1 AAAATA-CTTACCATTTATTCCATAAGCTCATAAGCTTATTTTACC
* * *
2920432 AAAATACTTACCATTTAAATTTCATAAGCTCGTAAGCTTATTTTTCC
1 AAAATACTTACCATTT--ATTCCATAAGCTCATAAGCTTATTTTACC
* * *
2920479 AATATACTTGCCA-TTATTCCGTAAGCTCATAAGCTTATTT
1 AAAATACTTACCATTTATTCCATAAGCTCATAAGCTTATTT
2920519 GCATGGTTAC
Statistics
Matches: 76, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
44 22 0.29
45 10 0.13
46 8 0.11
47 36 0.47
ACGTcount: A:0.33, C:0.21, G:0.07, T:0.39
Consensus pattern (45 bp):
AAAATACTTACCATTTATTCCATAAGCTCATAAGCTTATTTTACC
Found at i:2924494 original size:36 final size:36
Alignment explanation
Indices: 2924416--2924589 Score: 296
Period size: 36 Copynumber: 4.9 Consensus size: 36
2924406 ACGATGTTGG
*
2924416 ACATTGATACACGAATGTATCAAAGCTGATA-GATA
1 ACATTGATACACGAATGTACCAAAGCTGATATGATA
2924451 ACATTGATACACGAATGTACCAAAGCTGATATGATA
1 ACATTGATACACGAATGTACCAAAGCTGATATGATA
* *
2924487 ACATTGATACATGAATGTACCAAAGTTGATATGATA
1 ACATTGATACACGAATGTACCAAAGCTGATATGATA
*
2924523 ACATTGATACACGTATGTACCAAAGCTGATATGATA
1 ACATTGATACACGAATGTACCAAAGCTGATATGATA
*
2924559 ACATTGATACACGAATGTATCAAAGCTGATA
1 ACATTGATACACGAATGTACCAAAGCTGATA
2924590 ATACTCAACT
Statistics
Matches: 130, Mismatches: 8, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
35 30 0.23
36 100 0.77
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (36 bp):
ACATTGATACACGAATGTACCAAAGCTGATATGATA
Found at i:2925885 original size:14 final size:14
Alignment explanation
Indices: 2925862--2925899 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
2925852 TCTGTCTATA
*
2925862 TGCAGAGATTT-TT
1 TGCAGGGATTTATT
2925875 TCGCAGGGATTTATT
1 T-GCAGGGATTTATT
2925890 TGCAGGGATT
1 TGCAGGGATT
2925900 ACTGCCCATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 1 0.05
14 18 0.82
15 3 0.14
ACGTcount: A:0.21, C:0.11, G:0.29, T:0.39
Consensus pattern (14 bp):
TGCAGGGATTTATT
Found at i:2932433 original size:36 final size:36
Alignment explanation
Indices: 2932381--2932519 Score: 224
Period size: 36 Copynumber: 3.9 Consensus size: 36
2932371 ACGATGCTAG
*
2932381 ACATTGATACACGAATGTGCCAAAGCTGATATGATA
1 ACATTGATACACGAATGTACCAAAGCTGATATGATA
* * *
2932417 ACATTGATATATGAATGTACCAAAGGTGATATGATA
1 ACATTGATACACGAATGTACCAAAGCTGATATGATA
2932453 ACATTGATACACGAATGTACCAAAGCTGATATGATA
1 ACATTGATACACGAATGTACCAAAGCTGATATGATA
* *
2932489 ACACTGATACACGAATGTATCAAAGCTGATA
1 ACATTGATACACGAATGTACCAAAGCTGATA
2932520 ATACTCAACT
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 94 1.00
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (36 bp):
ACATTGATACACGAATGTACCAAAGCTGATATGATA
Found at i:2943811 original size:21 final size:21
Alignment explanation
Indices: 2943785--2943824 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
2943775 CCTCCTTTGA
*
2943785 AGGGGAACCGATTCCCCCCAC
1 AGGGGAACCGATACCCCCCAC
*
2943806 AGGGGAATCGATACCCCCC
1 AGGGGAACCGATACCCCCC
2943825 TGGGGTTCTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.40, G:0.25, T:0.10
Consensus pattern (21 bp):
AGGGGAACCGATACCCCCCAC
Found at i:2951055 original size:64 final size:65
Alignment explanation
Indices: 2950982--2951143 Score: 161
Period size: 64 Copynumber: 2.5 Consensus size: 65
2950972 ATTATTTGAA
* * *** *
2950982 GGTGTATCGATGCACAAGTAGTGCATCGATGCACT-CTTTTAATCTAA-AAACATCGAATGTAAT
1 GGTGCATCGATGCACAAGTAGTGCATCAATGCACTCCCAGTAAT-AAACAAACATCGAATGTAAT
2951045 T
65 T
* * *
2951046 GGTGCATCGATGCATAAGGCA-TGCATCAATGCA-TCCCAGTAATAAACAAACATCGAATGTATT
1 GGTGCATCGATGCACAA-GTAGTGCATCAATGCACTCCCAGTAATAAACAAACATCGAATGTAAT
2951109 T
65 T
** * *
2951110 TATGCACCGATGCACAGGTAGTGCATCAATGCAC
1 GGTGCATCGATGCACAAGTAGTGCATCAATGCAC
2951144 CGATAGGGAA
Statistics
Matches: 78, Mismatches: 15, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
63 5 0.06
64 71 0.91
65 2 0.03
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (65 bp):
GGTGCATCGATGCACAAGTAGTGCATCAATGCACTCCCAGTAATAAACAAACATCGAATGTAATT
Found at i:2953070 original size:21 final size:21
Alignment explanation
Indices: 2953044--2953084 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
2953034 TCTGGGCAAA
2953044 GTGTATCGATGCACATTCAAT
1 GTGTATCGATGCACATTCAAT
*
2953065 GTGTATCGATGCACTTTCAA
1 GTGTATCGATGCACATTCAA
2953085 ATAAATGAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34
Consensus pattern (21 bp):
GTGTATCGATGCACATTCAAT
Found at i:2953114 original size:18 final size:18
Alignment explanation
Indices: 2953091--2953127 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
2953081 TCAAATAAAT
2953091 GAACATCGAATGCAATTA
1 GAACATCGAATGCAATTA
2953109 GAACATCGAATGCAATTA
1 GAACATCGAATGCAATTA
2953127 G
1 G
2953128 TGCATTGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.43, C:0.16, G:0.19, T:0.22
Consensus pattern (18 bp):
GAACATCGAATGCAATTA
Found at i:2954832 original size:23 final size:23
Alignment explanation
Indices: 2954742--2954824 Score: 139
Period size: 23 Copynumber: 3.6 Consensus size: 23
2954732 CATTTTATAT
2954742 GGCACTTCGGTGCAATTCTACGC
1 GGCACTTCGGTGCAATTCTACGC
2954765 GGCACTTCGGTGCAATTCTACGC
1 GGCACTTCGGTGCAATTCTACGC
* * *
2954788 GACACTTCAGTGCAATTCTACGT
1 GGCACTTCGGTGCAATTCTACGC
2954811 GGCACTTCGGTGCA
1 GGCACTTCGGTGCA
2954825 TTTATACGAG
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 55 1.00
ACGTcount: A:0.19, C:0.29, G:0.25, T:0.27
Consensus pattern (23 bp):
GGCACTTCGGTGCAATTCTACGC
Found at i:2961589 original size:29 final size:31
Alignment explanation
Indices: 2961557--2961618 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 31
2961547 TTTCACTTTT
*
2961557 ACCACTGATCT-TTCAACT-TTGTCAATCAA
1 ACCACTGAACTATTCAACTGTTGTCAATCAA
* * *
2961586 ACCACTTAACTATTTAATTGTTGTCAATCAA
1 ACCACTGAACTATTCAACTGTTGTCAATCAA
2961617 AC
1 AC
2961619 TACTAACCGT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 9 0.33
30 5 0.19
31 13 0.48
ACGTcount: A:0.34, C:0.24, G:0.06, T:0.35
Consensus pattern (31 bp):
ACCACTGAACTATTCAACTGTTGTCAATCAA
Found at i:2962320 original size:7 final size:7
Alignment explanation
Indices: 2962309--2962357 Score: 53
Period size: 7 Copynumber: 6.6 Consensus size: 7
2962299 TATTATTACT
*
2962309 AATATTT
1 AATATTA
2962316 AATATATA
1 AATAT-TA
2962324 AATATTA
1 AATATTA
*
2962331 AATAAATA
1 AAT-ATTA
2962339 TAATATTA
1 -AATATTA
2962347 AATATTA
1 AATATTA
2962354 AATA
1 AATA
2962358 AATAAATAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
7 21 0.58
8 12 0.33
9 3 0.08
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
AATATTA
Found at i:2962368 original size:18 final size:23
Alignment explanation
Indices: 2962330--2962406 Score: 73
Period size: 23 Copynumber: 3.0 Consensus size: 23
2962320 TATAAATATT
2962330 AAATAAATATAATATTAAATATT
1 AAATAAATATAATATTAAATATT
2962353 AAATAAATAAATAATATTAATAATAGTATT
1 AAATAAAT--ATAATA-T--TAA-A-TATT
* *
2962383 AAATAAATCTAATATAAAATATT
1 AAATAAATATAATATTAAATATT
2962406 A
1 A
2962407 TTAATATTAT
Statistics
Matches: 45, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
23 13 0.29
24 1 0.02
25 8 0.18
26 1 0.02
27 1 0.02
28 8 0.18
29 1 0.02
30 12 0.27
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.36
Consensus pattern (23 bp):
AAATAAATATAATATTAAATATT
Found at i:2962369 original size:30 final size:31
Alignment explanation
Indices: 2962308--2962415 Score: 91
Period size: 30 Copynumber: 3.5 Consensus size: 31
2962298 ATATTATTAC
*
2962308 TAATATTTAATATATAAAT-ATTAAATAAATA-
1 TAATA-TTAATAT-TAAATAAATAAATAAATAT
2962339 TAATATTAAATATTAAATAAATAAAT-AATAT
1 TAATATT-AATATTAAATAAATAAATAAATAT
* *
2962370 TAATAATAGTATTAAATAAATCTAATATAAA-A-
1 TAATATTAATATTAAATAAA--TAA-ATAAATAT
*
2962402 TATTATTAATATTA
1 TAATATTAATATTA
2962416 TTAATAATAA
Statistics
Matches: 64, Mismatches: 6, Indels: 13
0.77 0.07 0.16
Matches are distributed among these distances:
30 23 0.36
31 22 0.34
32 14 0.22
33 3 0.05
34 2 0.03
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (31 bp):
TAATATTAATATTAAATAAATAAATAAATAT
Found at i:2962376 original size:34 final size:34
Alignment explanation
Indices: 2962293--2962377 Score: 90
Period size: 31 Copynumber: 2.6 Consensus size: 34
2962283 ATATGCGATT
* * *
2962293 TAAT-AATATTATTACTAATATTTAATATATAAA
1 TAATAAATAATATTAATAATATTAAATATATAAA
*
2962326 TATTAAATAA-A-T-ATAATATTAAATAT-TAAA
1 TAATAAATAATATTAATAATATTAAATATATAAA
2962356 TAAATAAATAATATTAATAATA
1 T-AATAAATAATATTAATAATA
2962378 GTATTAAATA
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
30 5 0.12
31 20 0.48
32 2 0.05
33 5 0.12
34 10 0.24
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (34 bp):
TAATAAATAATATTAATAATATTAAATATATAAA
Found at i:2962421 original size:53 final size:53
Alignment explanation
Indices: 2962302--2962506 Score: 136
Period size: 53 Copynumber: 4.0 Consensus size: 53
2962292 TTAATAATAT
* * * * *
2962302 TATTACTAATATTTAATATATAAATATTAAATAAATATAATATTAAATATTAAATAA
1 TATTATTAATA-TTAATA-AT-AGTATTAAATAAATCTAATATAAAATATT-ATTAA
* *
2962359 -ATAAATAATATTAATAATAGTATTAAATAAATCTAATATAAAATATTATTAA
1 TATTATTAATATTAATAATAGTATTAAATAAATCTAATATAAAATATTATTAA
* * * *
2962411 TATTATTAATAATAAAAATATGTGATT---TGAAT-TATTAT-AAA-A-TATT-A
1 TATTATTAATATTAATAATA-GT-ATTAAATAAATCTAATATAAAATATTATTAA
2962458 TATT-TTAATA--AAT-A-A-TATTAAATAAATC-ATATATAAAATATTATTAA
1 TATTATTAATATTAATAATAGTATTAAATAAATCTA-ATATAAAATATTATTAA
2962505 TA
1 TA
2962507 ATTTTAAATA
Statistics
Matches: 121, Mismatches: 15, Indels: 34
0.71 0.09 0.20
Matches are distributed among these distances:
39 3 0.02
40 1 0.01
42 6 0.05
43 4 0.03
44 5 0.04
45 1 0.01
46 10 0.08
47 8 0.07
48 4 0.03
49 1 0.01
50 3 0.02
51 5 0.04
52 8 0.07
53 41 0.34
54 4 0.03
55 9 0.07
56 8 0.07
ACGTcount: A:0.55, C:0.01, G:0.02, T:0.42
Consensus pattern (53 bp):
TATTATTAATATTAATAATAGTATTAAATAAATCTAATATAAAATATTATTAA
Found at i:2964808 original size:26 final size:26
Alignment explanation
Indices: 2964725--2964801 Score: 136
Period size: 26 Copynumber: 3.0 Consensus size: 26
2964715 TTTTATATTC
*
2964725 GAAACATTAACTTATACATTACATTA
1 GAAACATTAACTTCTACATTACATTA
*
2964751 GAAACATTAACTTCTACATTGCATTA
1 GAAACATTAACTTCTACATTACATTA
2964777 GAAACATTAACTTCTACATTACATT
1 GAAACATTAACTTCTACATTACATT
2964802 TGTAACACCC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.42, C:0.18, G:0.05, T:0.35
Consensus pattern (26 bp):
GAAACATTAACTTCTACATTACATTA
Found at i:2967801 original size:27 final size:24
Alignment explanation
Indices: 2967746--2967802 Score: 114
Period size: 24 Copynumber: 2.4 Consensus size: 24
2967736 ATCGAAAAAT
2967746 TATGATGAAATAATCATGATAGGG
1 TATGATGAAATAATCATGATAGGG
2967770 TATGATGAAATAATCATGATAGGG
1 TATGATGAAATAATCATGATAGGG
2967794 TATGATGAA
1 TATGATGAA
2967803 TTATTAAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.42, C:0.04, G:0.25, T:0.30
Consensus pattern (24 bp):
TATGATGAAATAATCATGATAGGG
Found at i:2969796 original size:22 final size:23
Alignment explanation
Indices: 2969770--2969815 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
2969760 CATAATTGTC
*
2969770 CCGAAGGACTACATA-GGTTGCA
1 CCGAAGGACCACATAGGGTTGCA
*
2969792 CCGAAGTACCACATAGGGTTGCA
1 CCGAAGGACCACATAGGGTTGCA
2969815 C
1 C
2969816 GAAAGTGCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 13 0.62
23 8 0.38
ACGTcount: A:0.30, C:0.26, G:0.26, T:0.17
Consensus pattern (23 bp):
CCGAAGGACCACATAGGGTTGCA
Found at i:2969818 original size:22 final size:22
Alignment explanation
Indices: 2969770--2969829 Score: 68
Period size: 23 Copynumber: 2.7 Consensus size: 22
2969760 CATAATTGTC
* *
2969770 CCGAAGGACTACATAGGTTGCA
1 CCGAAGTACCACATAGGTTGCA
2969792 CCGAAGTACCACATAGGGTTGCA
1 CCGAAGTACCACATA-GGTTGCA
*
2969815 -CGAAAGTGCCACATA
1 CCG-AAGTACCACATA
2969830 TTTGTCCCGA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
22 15 0.45
23 18 0.55
ACGTcount: A:0.33, C:0.25, G:0.25, T:0.17
Consensus pattern (22 bp):
CCGAAGTACCACATAGGTTGCA
Found at i:2970512 original size:55 final size:54
Alignment explanation
Indices: 2970383--2970579 Score: 279
Period size: 55 Copynumber: 3.6 Consensus size: 54
2970373 ATAATTAGGG
* * * * *
2970383 GTATCGAAACACTCCTCAGTGTACTGATACACAAATAACACTCGATGTTTGAG-
1 GTATCGATACACTCCTCAGTGTACCGATACACAAATGACATTCGATTTTTGAGT
*
2970436 GCTATCGATACACTCATCAGTGTACCGATACACAAATGACATTCGATATTTTGAGT
1 G-TATCGATACACTCCTCAGTGTACCGATACACAAATGACATTCGAT-TTTTGAGT
**
2970492 GTATCGATACACTCCTCAGTGTACCGATACACAAATGGTATTCGATGTTTTGAGT
1 GTATCGATACACTCCTCAGTGTACCGATACACAAATGACATTCGAT-TTTTGAGT
*
2970547 GTATCGATGCACTCCTCAGTGTACCGATACACA
1 GTATCGATACACTCCTCAGTGTACCGATACACA
2970580 CTCATACAAT
Statistics
Matches: 130, Mismatches: 11, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
53 1 0.01
54 40 0.31
55 88 0.68
56 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (54 bp):
GTATCGATACACTCCTCAGTGTACCGATACACAAATGACATTCGATTTTTGAGT
Found at i:2976867 original size:21 final size:21
Alignment explanation
Indices: 2976838--2976887 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
2976828 AAAGAGTATA
* *
2976838 TTCACATTCAC-TGATTCGAAG
1 TTCATATTCACATG-TTCAAAG
2976859 TTCATATTCACATGTTCAAAG
1 TTCATATTCACATGTTCAAAG
2976880 TTCATATT
1 TTCATATT
2976888 TTCCTAACAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 24 0.92
22 2 0.08
ACGTcount: A:0.30, C:0.20, G:0.10, T:0.40
Consensus pattern (21 bp):
TTCATATTCACATGTTCAAAG
Found at i:2977334 original size:35 final size:34
Alignment explanation
Indices: 2977253--2977336 Score: 96
Period size: 34 Copynumber: 2.4 Consensus size: 34
2977243 AACACTCCTC
*
2977253 AGTGTACTGATACACAAATAACACTCGATGTTTG
1 AGTGTATTGATACACAAATAACACTCGATGTTTG
* * * ** *
2977287 AGGGCATCGATACACAAATGGCATTCGATGTTTTG
1 AGTGTATTGATACACAAATAACACTCGATG-TTTG
2977322 AGTGTATTGATACAC
1 AGTGTATTGATACAC
2977337 TCCTCAGTGT
Statistics
Matches: 39, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
34 23 0.59
35 16 0.41
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (34 bp):
AGTGTATTGATACACAAATAACACTCGATGTTTG
Found at i:2977362 original size:55 final size:55
Alignment explanation
Indices: 2977294--2977412 Score: 211
Period size: 55 Copynumber: 2.2 Consensus size: 55
2977284 TTGAGGGCAT
*
2977294 CGATACACAAATGGCATTCGATGTTTTGAGTGTATTGATACACTCCTCAGTGTAC
1 CGATACACAAATGGCATTCGATGTTTTGAGTGTATCGATACACTCCTCAGTGTAC
* *
2977349 CGATACACAAATGGTATTTGATGTTTTGAGTGTATCGATACACTCCTCAGTGTAC
1 CGATACACAAATGGCATTCGATGTTTTGAGTGTATCGATACACTCCTCAGTGTAC
2977404 CGATACACA
1 CGATACACA
2977413 CTCATACAAT
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 61 1.00
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (55 bp):
CGATACACAAATGGCATTCGATGTTTTGAGTGTATCGATACACTCCTCAGTGTAC
Found at i:2980578 original size:64 final size:65
Alignment explanation
Indices: 2980467--2980617 Score: 191
Period size: 64 Copynumber: 2.3 Consensus size: 65
2980457 TCTTTCAATG
* * * * * *
2980467 AAGGTATGCATCGATGCACTA-CTTGTGCATCGGTGCATAAAATGCATTCGATGTTTTTATTTTA
1 AAGGAATGCATCGATGCATTATCTTATGCATCGATGCATAAAAGGCATTCGATGTTCTTATTTT-
2980531 A
65 A
* *
2980532 AAGG-ATGCATCGATGCATTATC-TATGCATCGATGCATCAAAGGCATTCGATGTTCTTCTTTTA
1 AAGGAATGCATCGATGCATTATCTTATGCATCGATGCATAAAAGGCATTCGATGTTCTTATTTTA
2980595 AAGGAATGCATCGATGCACTTAT
1 AAGGAATGCATCGATGCA-TTAT
2980618 GAATGTGCAT
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
63 5 0.07
64 62 0.82
65 9 0.12
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34
Consensus pattern (65 bp):
AAGGAATGCATCGATGCATTATCTTATGCATCGATGCATAAAAGGCATTCGATGTTCTTATTTTA
Found at i:2984152 original size:14 final size:14
Alignment explanation
Indices: 2984133--2984174 Score: 75
Period size: 14 Copynumber: 3.0 Consensus size: 14
2984123 TATACATGTA
2984133 TTCATGTAAATCAT
1 TTCATGTAAATCAT
2984147 TTCATGTAAATCAT
1 TTCATGTAAATCAT
*
2984161 TTCATGTAATTCAT
1 TTCATGTAAATCAT
2984175 ATCACATATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.33, C:0.14, G:0.07, T:0.45
Consensus pattern (14 bp):
TTCATGTAAATCAT
Found at i:2984187 original size:28 final size:28
Alignment explanation
Indices: 2984133--2984187 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 28
2984123 TATACATGTA
* **
2984133 TTCATGTAAATCATTTCATGTAAATCAT
1 TTCATGTAAATCATATCACATAAATCAT
* *
2984161 TTCATGTAATTCATATCACATATATCA
1 TTCATGTAAATCATATCACATAAATCA
2984188 CATGTGCATA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.36, C:0.16, G:0.05, T:0.42
Consensus pattern (28 bp):
TTCATGTAAATCATATCACATAAATCAT
Found at i:2984694 original size:18 final size:18
Alignment explanation
Indices: 2984663--2984700 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
2984653 TGTGCATCGG
*
2984663 TGCATAAAATGCATTCGA
1 TGCATAAAAGGCATTCGA
*
2984681 TGCATCAAAGGCATTCGA
1 TGCATAAAAGGCATTCGA
2984699 TG
1 TG
2984701 TTCTTCTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.26
Consensus pattern (18 bp):
TGCATAAAAGGCATTCGA
Found at i:2986645 original size:21 final size:20
Alignment explanation
Indices: 2986597--2986645 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
2986587 CTATCTTTAT
* *
2986597 TTTTAACTTTTCATATATAA
1 TTTTAACTATTCATAAATAA
*
2986617 TTGCTAACTATTCATAAATAA
1 TT-TTAACTATTCATAAATAA
2986638 CTTTTAAC
1 -TTTTAAC
2986646 AAAATAGCTA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 2 0.09
21 19 0.83
22 2 0.09
ACGTcount: A:0.37, C:0.14, G:0.02, T:0.47
Consensus pattern (20 bp):
TTTTAACTATTCATAAATAA
Found at i:2987022 original size:20 final size:20
Alignment explanation
Indices: 2986984--2987022 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
2986974 ATCCCATTCC
**
2986984 TTCTTCTTCATCTTTATCTT
1 TTCTTCTTCATCTCCATCTT
*
2987004 TTCTTCTTCTTCTCCATCT
1 TTCTTCTTCATCTCCATCT
2987023 CAAGCATTAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.08, C:0.31, G:0.00, T:0.62
Consensus pattern (20 bp):
TTCTTCTTCATCTCCATCTT
Found at i:2989405 original size:33 final size:34
Alignment explanation
Indices: 2989364--2989441 Score: 97
Period size: 35 Copynumber: 2.3 Consensus size: 34
2989354 TTGTTATATT
*
2989364 TTATTAAAATAA-A-ATTATTATAAATTATACTAA
1 TTATTAAAATAATATATTATAATAAATTA-ACTAA
* *
2989397 TTATTAAAATAATTATATTATAATAATTTAATTAA
1 TTATTAAAATAA-TATATTATAATAAATTAACTAA
2989432 TTATTAAAAT
1 TTATTAAAAT
2989442 GTTATTAAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
33 12 0.31
35 15 0.38
36 12 0.31
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (34 bp):
TTATTAAAATAATATATTATAATAAATTAACTAA
Found at i:2989431 original size:28 final size:27
Alignment explanation
Indices: 2989373--2989424 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
2989363 TTTATTAAAA
* *
2989373 TAAAATTATTATAAATTATACTAATTAT
1 TAAAATAATTAT-AATTATAATAATTAT
2989401 TAAAATAATTAT-ATTATAATAATT
1 TAAAATAATTATAATTATAATAATT
2989425 TAATTAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 11 0.50
28 11 0.50
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (27 bp):
TAAAATAATTATAATTATAATAATTAT
Found at i:2989640 original size:27 final size:28
Alignment explanation
Indices: 2989609--2989666 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
2989599 TTAAAAAGTA
2989609 TAATATTAA-ATTATCAATAAATAT-ATT
1 TAATATTAACATTATCAATAAA-ATGATT
* *
2989636 TAATATTAACATTTTCATTAAAATGATT
1 TAATATTAACATTATCAATAAAATGATT
2989664 TAA
1 TAA
2989667 ATACTATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 11 0.41
28 16 0.59
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (28 bp):
TAATATTAACATTATCAATAAAATGATT
Found at i:2993326 original size:202 final size:199
Alignment explanation
Indices: 2992982--2993378 Score: 685
Period size: 202 Copynumber: 2.0 Consensus size: 199
2992972 CGAACCAAGT
2992982 ACGCCCCAAAACACGCCAGAATGTGCCAAGCCCGCACCAAATTAGATAAAGCCGAACACAACATG
1 ACGCCCCAAAACACGCCAGAATGTGCCAAGCCCGCACCAAATTAGATAAAGCCGAACACAACATG
2993047 ATTCGACCTTTCTAAGAAAAGGGACAAAGCCACATCCTTGTTCAGTAGGATTCAACCTTTAGACT
66 ATTCGACCTTTCTAAGAAAAGGGACAAAGCCACATCCTTGTTCAGTAGGATTCAACCTTTAGACT
2993112 TTTAACTAAAGTATGGTAGTACTTTTAGTTAG-TT-AGTATACTTAGTCATT-ACTCTTAGGGCT
131 TTTAACTAAAGTATGGTAGTACTTTTAGTTAGATTAAGTATACTTAGTCATTAACTCTTAGGGCT
2993174 TCTC
196 TCTC
2993178 ACGCCCCAAAACACGCCAAGGAATGTGCCAAGCCCGCACCAGAATTAGATAAAGCCG-ACACAAC
1 ACGCCCCAAAACACGCC-A-GAATGTGCCAAGCCCGCACCA-AATTAGATAAAGCCGAACACAAC
2993242 ATGATTCAGACCCTTTCTAAGAAAAGGGACAAAGCCAACATCCTTGTTCAAGTAGGATTCAACCT
63 ATGATTC-GA-CCTTTCTAAGAAAAGGGACAAAGCC-ACATCCTTGTTC-AGTAGGATTCAACCT
2993307 TTAGACTTTTAACTAAAGTATGGTAGTACTTTTAGTTAGATTAGAAGTATACTTAGTCATTAACT
124 TTAGACTTTTAACTAAAGTATGGTAGTACTTTTAGTTAGATT--AAGTATACTTAGTCATTAACT
2993372 CTTAGGG
187 CTTAGGG
2993379 GATTCTCAAT
Statistics
Matches: 189, Mismatches: 0, Indels: 13
0.94 0.00 0.06
Matches are distributed among these distances:
196 17 0.09
197 1 0.01
198 35 0.19
199 17 0.09
200 25 0.13
201 12 0.06
202 54 0.29
203 2 0.01
206 16 0.08
207 10 0.05
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (199 bp):
ACGCCCCAAAACACGCCAGAATGTGCCAAGCCCGCACCAAATTAGATAAAGCCGAACACAACATG
ATTCGACCTTTCTAAGAAAAGGGACAAAGCCACATCCTTGTTCAGTAGGATTCAACCTTTAGACT
TTTAACTAAAGTATGGTAGTACTTTTAGTTAGATTAAGTATACTTAGTCATTAACTCTTAGGGCT
TCTC
Found at i:2995307 original size:17 final size:17
Alignment explanation
Indices: 2995281--2995314 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
2995271 TATTTTAATG
*
2995281 AAAATTTTTTAGATATT
1 AAAATATTTTAGATATT
*
2995298 AAAATATTTTAGGTATT
1 AAAATATTTTAGATATT
2995315 TGTTTTTGTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (17 bp):
AAAATATTTTAGATATT
Found at i:2995559 original size:2 final size:2
Alignment explanation
Indices: 2995554--2995604 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
2995544 TCTCTCTTCA
2995554 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2995596 AT AT AT AT A
1 AT AT AT AT A
2995605 ACATTAGAAT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:2995818 original size:2 final size:2
Alignment explanation
Indices: 2995811--2995858 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
2995801 ATCCTTTCCC
2995811 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2995853 AT AT AT
1 AT AT AT
2995859 TAATTAAAAC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3001736 original size:15 final size:15
Alignment explanation
Indices: 3001718--3001746 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
3001708 AGGGTTCTGT
3001718 AGTCCTTCGGGACGA
1 AGTCCTTCGGGACGA
3001733 AGTCCTTCGGGACG
1 AGTCCTTCGGGACG
3001747 TAGTGGTCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.28, G:0.34, T:0.21
Consensus pattern (15 bp):
AGTCCTTCGGGACGA
Found at i:3008589 original size:15 final size:15
Alignment explanation
Indices: 3008571--3008605 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
3008561 CGAGGGTTCT
3008571 GTAGTCCTTCGGGAC
1 GTAGTCCTTCGGGAC
3008586 GTAGTCCTTCGGGAC
1 GTAGTCCTTCGGGAC
3008601 GTAGT
1 GTAGT
3008606 GGTCCTACGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.14, C:0.23, G:0.34, T:0.29
Consensus pattern (15 bp):
GTAGTCCTTCGGGAC
Found at i:3017014 original size:21 final size:21
Alignment explanation
Indices: 3016988--3017040 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
3016978 ATTATCTAAT
**
3016988 AAACTTGCCATCCATAACAAC
1 AAACTTGAAATCCATAACAAC
*
3017009 AAACTTGAAATCCATAACAAG
1 AAACTTGAAATCCATAACAAC
*
3017030 AAAATTGAAAT
1 AAACTTGAAAT
3017041 AAATAATAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.51, C:0.21, G:0.08, T:0.21
Consensus pattern (21 bp):
AAACTTGAAATCCATAACAAC
Found at i:3017046 original size:21 final size:21
Alignment explanation
Indices: 3017001--3017046 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
3016991 CTTGCCATCC
* **
3017001 ATAACAACAAACTTGAAATCC
1 ATAACAACAAAATTGAAATAA
*
3017022 ATAACAAGAAAATTGAAATAA
1 ATAACAACAAAATTGAAATAA
3017043 ATAA
1 ATAA
3017047 TAATATATCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.61, C:0.13, G:0.07, T:0.20
Consensus pattern (21 bp):
ATAACAACAAAATTGAAATAA
Found at i:3017694 original size:82 final size:81
Alignment explanation
Indices: 3017553--3017810 Score: 256
Period size: 82 Copynumber: 3.1 Consensus size: 81
3017543 TGTAAACTTA
* * * *
3017553 CGACGTTTGTAAACACAAATGCCACTAAAATACGAGTTTATAGCGGCATTTTTACAAAAACACCA
1 CGACGTTTGTATA-A-AAATGCCACT-AAATACGAGTTTATAGCGGCGTTTGTATAAAAACACCA
3017618 CTAAAGTACGAGTCTTTAG
63 CTAAAGTACGAGTCTTTAG
* **
3017637 TGACGTTTGTATAAAAATGCCACTAAAGTACGAGTTTATAGCGGCGTTTGTATAAAAATGCCACT
1 CGACGTTTGTATAAAAATGCCACTAAA-TACGAGTTTATAGCGGCGTTTGTATAAAAACACCACT
3017702 AAAGTACGAGT-TTATAG
65 AAAGTACGAGTCTT-TAG
* * * * * *
3017719 CGGCGTTTGTAT-AAAATCCCCACTATAATATGAGTCTT-TAGGGGCGTTTGTTTACAAACACCA
1 CGACGTTTGTATAAAAAT-GCCACTA-AATACGAGT-TTATAGCGGCGTTTGTATAAAAACACCA
*
3017782 -TGAAAGT-CAGAGTCTTTTG
63 CT-AAAGTAC-GAGTCTTTAG
*
3017801 CGGCGTTTGT
1 CGACGTTTGT
3017811 TCAAAAAACG
Statistics
Matches: 149, Mismatches: 17, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
81 12 0.08
82 119 0.80
83 7 0.05
84 11 0.07
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (81 bp):
CGACGTTTGTATAAAAATGCCACTAAATACGAGTTTATAGCGGCGTTTGTATAAAAACACCACTA
AAGTACGAGTCTTTAG
Found at i:3017769 original size:41 final size:41
Alignment explanation
Indices: 3017569--3017734 Score: 244
Period size: 41 Copynumber: 4.0 Consensus size: 41
3017559 TTGTAAACAC
* * * *
3017569 AAATGCCACTAAAATACGAGTTTATAGCGGCATTTTTACAA
1 AAATGCCACTAAAGTACGAGTTTATAGCGGCGTTTGTATAA
** * *
3017610 AAACACCACTAAAGTACGAGTCTT-TAGTGACGTTTGTATAA
1 AAATGCCACTAAAGTACGAGT-TTATAGCGGCGTTTGTATAA
3017651 AAATGCCACTAAAGTACGAGTTTATAGCGGCGTTTGTATAA
1 AAATGCCACTAAAGTACGAGTTTATAGCGGCGTTTGTATAA
3017692 AAATGCCACTAAAGTACGAGTTTATAGCGGCGTTTGTATAA
1 AAATGCCACTAAAGTACGAGTTTATAGCGGCGTTTGTATAA
3017733 AA
1 AA
3017735 TCCCCACTAT
Statistics
Matches: 111, Mismatches: 12, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
40 2 0.02
41 107 0.96
42 2 0.02
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.29
Consensus pattern (41 bp):
AAATGCCACTAAAGTACGAGTTTATAGCGGCGTTTGTATAA
Found at i:3017817 original size:123 final size:123
Alignment explanation
Indices: 3017569--3017810 Score: 294
Period size: 123 Copynumber: 2.0 Consensus size: 123
3017559 TTGTAAACAC
*
3017569 AAATGCCACTAAAATACGAGTTTATAGCGGCATTTTTACAAAAACACCACTAAAGTACGAGTCTT
1 AAATGCCACTAAAATACGAGTTTATAGCGGCATTTGTACAAAAACACCACTAAAGTACGAGTCTT
* **
3017634 TAGTGACGTTTGTATAAAAATGCCACTAAAGTACGAGTTTATAGCGGCGTTTGTATAA
66 TAGGGACGTTTGTATAAAAACACCACTAAAGTACGAGTTTATAGCGGCGTTTGTATAA
* * * * * *
3017692 AAATGCCACTAAAGTACGAGTTTATAGCGGCGTTTGTATAAAATCCCCACTATAA-TATGAGTCT
1 AAATGCCACTAAAATACGAGTTTATAGCGGCATTTGTACAAAAACACCACTA-AAGTACGAGTCT
* * * *
3017756 TTAGGGGCGTTTGTTTACAAACACCA-TGAAAGT-CAGAGTCTT-TTGCGGCGTTTGT
65 TTAGGGACGTTTGTATAAAAACACCACT-AAAGTAC-GAGT-TTATAGCGGCGTTTGT
3017811 TCAAAAAACG
Statistics
Matches: 101, Mismatches: 14, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
122 2 0.02
123 95 0.94
124 4 0.04
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.31
Consensus pattern (123 bp):
AAATGCCACTAAAATACGAGTTTATAGCGGCATTTGTACAAAAACACCACTAAAGTACGAGTCTT
TAGGGACGTTTGTATAAAAACACCACTAAAGTACGAGTTTATAGCGGCGTTTGTATAA
Found at i:3017904 original size:23 final size:22
Alignment explanation
Indices: 3017878--3017921 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
3017868 TTTATGACAC
3017878 GTTTATATATGCCTTTGTGGTAT
1 GTTTATATATGCCTTT-TGGTAT
* * *
3017901 GTTTTTCTCTGCCTTTTGGTA
1 GTTTATATATGCCTTTTGGTA
3017922 GCTTATGATT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.11, C:0.14, G:0.20, T:0.55
Consensus pattern (22 bp):
GTTTATATATGCCTTTTGGTAT
Found at i:3018695 original size:247 final size:248
Alignment explanation
Indices: 3018222--3018956 Score: 1216
Period size: 247 Copynumber: 3.0 Consensus size: 248
3018212 AGTTTTTTTT
* *
3018222 ACTTTTTCCTTCTTTGGTCCTTATGTGATATAGGTGGCTAATTTTTGTCTTTATGGTAATAGAAA
1 ACTTTTTCCTTCTTTGGTCCTTATGTGATATAGATGGCTAATTTTTGTCTCTATGGTAATAGAAA
3018287 AATGTCATAATTATATTTTAGGTTTACGGTTATGCTTGTAAATCTTCATTGTAATTTTGGATA-T
66 AATGTCATAATTATATTTTAGGTTTACGGTTATGCTTGTAAATCTTCATTGTAATTTTGGATATT
*
3018351 ATTT-TTTTTAATAAAACTAACGACTTTCTATCAA-TTTTTTTGACTTTTTGAAAGTCAATAATG
131 TTTTATTTTTAATAAAACTAACGACTTTCTATCAATTTTTTTTGACTTTTTGAAAGTCAATAATG
3018414 AACACATTTAGTGAGATGGAAGGAGTAATTTGTACCCAAATTATTTCAATACA
196 AACACATTTAGTGAGATGGAAGGAGTAATTTGTACCCAAATTATTTCAATACA
*
3018467 ACTTTTTCCTTCTTTGGTCCTTATTTGATATAGATGGCTAATTTTTGTCTCTATGGTAATAG-AA
1 ACTTTTTCCTTCTTTGGTCCTTATGTGATATAGATGGCTAATTTTTGTCTCTATGGTAATAGAAA
* *
3018531 AATGTCATAATTATATTTTAGGTTTACGGTTTTGCTTGTAATTCTTCATTGTAATTTTGGATATT
66 AATGTCATAATTATATTTTAGGTTTACGGTTATGCTTGTAAATCTTCATTGTAATTTTGGATATT
*
3018596 TTTTATTTTTAATAAAACTAATGACTTTCTATCAATTTTTTTTGACTTTTTGAAAGTCAATAATG
131 TTTTATTTTTAATAAAACTAACGACTTTCTATCAATTTTTTTTGACTTTTTGAAAGTCAATAATG
3018661 AACACATTTAGTGAGATGGAAGGAGTAATTTGTACCCAAATTATTTCAATACA
196 AACACATTTAGTGAGATGGAAGGAGTAATTTGTACCCAAATTATTTCAATACA
* *
3018714 ACTTTTTTCTT-ATTGGTCCTTATGTGATATA-AGTGGCTAATTTTTGTCTCTATGGTAATAGAA
1 ACTTTTTCCTTCTTTGGTCCTTATGTGATATAGA-TGGCTAATTTTTGTCTCTATGGTAATAGAA
*
3018777 AAATGTCATAATTATATTTTAGGTTTACGGTTATACTTGTAAATCTTCATTGTAATTTTGGATAT
65 AAATGTCATAATTATATTTTAGGTTTACGGTTATGCTTGTAAATCTTCATTGTAATTTTGGATAT
* *
3018842 TTTCTATTTTTAATAAAACTAACGACTTTCTAT---TATTTTTTGACTTTTTGAAAG-------T
130 TTTTTATTTTTAATAAAACTAACGACTTTCTATCAATTTTTTTTGACTTTTTGAAAGTCAATAAT
* *
3018897 -AACACATTTAGTGAGACGGAGGGAGTAATTTGTACCCAAATTATTTCAATACA
195 GAACACATTTAGTGAGATGGAAGGAGTAATTTGTACCCAAATTATTTCAATACA
3018950 ACTTTTT
1 ACTTTTT
3018957 TCGTTGACAA
Statistics
Matches: 467, Mismatches: 18, Indels: 19
0.93 0.04 0.04
Matches are distributed among these distances:
236 58 0.12
237 1 0.00
244 83 0.18
245 64 0.14
246 75 0.16
247 186 0.40
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.45
Consensus pattern (248 bp):
ACTTTTTCCTTCTTTGGTCCTTATGTGATATAGATGGCTAATTTTTGTCTCTATGGTAATAGAAA
AATGTCATAATTATATTTTAGGTTTACGGTTATGCTTGTAAATCTTCATTGTAATTTTGGATATT
TTTTATTTTTAATAAAACTAACGACTTTCTATCAATTTTTTTTGACTTTTTGAAAGTCAATAATG
AACACATTTAGTGAGATGGAAGGAGTAATTTGTACCCAAATTATTTCAATACA
Found at i:3025261 original size:91 final size:90
Alignment explanation
Indices: 3025155--3025323 Score: 284
Period size: 91 Copynumber: 1.9 Consensus size: 90
3025145 AACAATGAGA
* *
3025155 TACTAAAATGAAACTAAAACTAAAGTTTAGGTATACATTTGAAAAAAATTAAAAGTTTAGATATT
1 TACTAAAATGAAACTAAAACTAAACTTTAGGTATACATTTGAAAAAAA-TAAAAGTTTAGATACT
3025220 AAAACGGACTAAAATAAACCGTAATT
65 AAAACGGACTAAAATAAACCGTAATT
* * *
3025246 TACTAAAATGAAACTAAAATTGAACTTTAGGTATACTTTTGAAAAAAATAAAAGTTTAGATACTA
1 TACTAAAATGAAACTAAAACTAAACTTTAGGTATACATTTGAAAAAAATAAAAGTTTAGATACTA
3025311 AAACGGACTAAAA
66 AAACGGACTAAAA
3025324 ACGTAATTTA
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
90 29 0.40
91 44 0.60
ACGTcount: A:0.51, C:0.09, G:0.11, T:0.28
Consensus pattern (90 bp):
TACTAAAATGAAACTAAAACTAAACTTTAGGTATACATTTGAAAAAAATAAAAGTTTAGATACTA
AAACGGACTAAAATAAACCGTAATT
Done.