Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000871.1 Hibiscus syriacus cultivar Beakdansim tig00001684_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58737

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1018--1053
17
2.1
17
94
0
63
33
13
27
25
1.94
7979--8089
57
1.9
57
87
0
159
41
9
14
35
1.77
14338--14400
23
2.7
23
90
0
99
34
15
22
26
1.94
14384--14434
15
2.9
19
75
22
65
27
13
23
35
1.93
14400--14435
15
2.4
15
100
0
72
27
13
25
33
1.94
14539--14639
16
6.5
15
75
5
85
33
21
7
36
1.83
14555--14639
15
5.5
15
75
5
89
34
22
7
36
1.81
14539--14639
31
3.3
31
95
0
184
33
21
7
36
1.83
22172--22211
17
2.4
17
87
4
55
47
2
2
47
1.29
27782--27915
73
1.9
72
81
6
164
31
17
18
32
1.95
30829--30877
20
2.4
20
80
16
64
55
2
36
6
1.37
32285--32327
20
2.2
20
92
8
72
30
6
25
37
1.82
34885--35008
63
2.0
63
84
6
162
41
19
20
18
1.91
38560--38599
20
2.0
21
85
5
55
37
12
2
47
1.55
39518--39575
21
2.7
22
72
17
59
29
24
17
29
1.97
39943--40026
44
1.9
44
95
0
150
21
1
5
71
1.14
44407--44444
15
2.5
15
95
4
67
28
0
0
71
0.87
44399--44460
28
2.3
27
85
2
79
27
0
1
70
0.96
44710--44757
17
2.9
17
87
3
62
75
2
0
22
0.91
46110--46134
3
8.3
3
100
0
50
0
36
0
64
0.94
46969--47017
24
2.0
24
84
7
64
34
30
14
20
1.92
48811--48860
26
1.9
26
87
0
73
58
6
8
28
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49661--49685
12
2.1
12
100
0
50
44
0
16
40
1.47

Tables:   1

The End!