genome.fa.s8710.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008710.1 Hibiscus syriacus cultivar Beakdansim tig00111759_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  170303

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127--155	15	1.9	15	100	0	58	17	27	34	20	1.95
6954--6988	15	2.3	15	100	0	70	14	22	34	28	1.93
14501--14630	41	3.2	41	74	8	120	37	16	14	31	1.89
15374--15426	21	2.5	21	87	0	70	50	20	7	20	1.72
15387--15432	21	2.2	21	84	0	56	60	13	6	19	1.54
15955--16194	81	3.0	80	80	10	229	32	17	20	30	1.95
15955--16153	40	4.9	40	84	6	233	33	16	19	30	1.94
16262--16305	23	2.0	22	81	4	52	11	13	20	54	1.69
16603--17338	247	3.0	247	92	3	1230	29	11	14	45	1.79
23556--23724	91	1.9	90	92	1	284	51	8	11	28	1.67
23978--24050	32	2.2	32	83	7	85	42	4	6	46	1.49
40974--41025	2	26.0	2	92	0	86	50	3	0	46	1.20
48581--48640	21	3.0	20	75	2	57	16	21	26	35	1.95
48662--48745	30	3.1	30	72	25	103	19	15	25	40	1.90
48692--48742	22	2.3	22	86	0	75	21	15	25	37	1.93
48841--48867	6	4.5	6	100	0	54	33	51	14	0	1.43
49484--49577	22	4.4	22	77	8	113	39	25	17	18	1.91
49506--49596	41	2.2	41	90	5	139	39	25	18	16	1.91
49541--49600	20	2.9	20	76	13	68	38	25	23	13	1.91
49589--49692	21	4.6	21	78	17	109	28	27	15	27	1.96
49465--49597	63	2.1	62	89	5	180	39	24	18	17	1.91
54196--54237	17	2.7	15	86	13	66	4	14	33	47	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54490--54523	11	3.0	11	87	8	50	67	0	32	0	0.91
55957--55994	19	2.0	19	85	10	51	47	0	2	50	1.15
57572--57688	58	2.0	58	100	0	234	41	20	13	23	1.88
59833--59869	17	2.2	17	86	13	51	37	8	0	54	1.30
61310--61369	27	2.4	26	83	10	72	43	5	1	50	1.34
61353--61400	24	2.0	24	84	8	62	35	2	2	60	1.20
61923--61987	32	2.1	32	91	2	105	53	7	7	30	1.57
63767--63993	83	2.7	83	80	8	207	33	13	18	34	1.90
63773--63993	41	5.3	41	76	10	166	33	14	19	33	1.91
63882--63996	42	2.8	40	80	6	122	32	12	17	38	1.87
65482--65696	82	2.6	82	73	5	202	26	13	18	40	1.89
66946--67160	82	2.6	82	75	5	211	26	13	19	40	1.89
74185--74253	21	3.3	21	72	8	68	47	17	33	1	1.56
74734--75026	43	6.9	42	82	5	261	33	25	14	26	1.94
74705--74983	85	3.3	86	84	3	298	33	24	15	26	1.95
74705--74981	43	6.5	43	82	5	276	33	24	15	25	1.95
74838--75025	85	2.2	83	84	5	243	30	25	13	30	1.93
76072--76107	17	2.1	17	89	0	54	47	5	5	41	1.50
82410--82443	17	2.0	17	88	0	50	44	8	11	35	1.72
84537--84586	19	2.6	19	100	0	100	30	16	32	22	1.95
85372--85461	30	3.0	30	95	0	162	24	17	22	35	1.95
85939--85975	18	2.1	18	100	0	74	16	10	32	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87975--88016	21	2.0	21	81	4	50	19	0	7	73	1.05
88175--88217	20	2.1	21	95	4	79	6	25	0	67	1.15
93047--93100	24	2.2	24	90	0	81	48	1	5	44	1.37
93055--93257	37	5.5	37	86	6	247	47	2	6	43	1.42
93055--93259	73	2.7	75	85	8	274	47	2	6	43	1.41
93320--93348	2	15.0	2	92	7	51	51	0	0	48	1.00
106344--106506	65	2.5	64	84	3	220	26	15	26	30	1.96
106454--106504	19	2.7	19	85	8	70	25	15	35	23	1.94
106348--106555	65	3.2	65	81	12	207	26	17	25	29	1.97
112192--112231	21	1.9	21	85	10	55	35	10	2	52	1.48
114175--114337	65	2.5	64	83	3	211	26	16	26	29	1.97
114285--114323	19	2.1	19	90	0	60	25	17	38	17	1.92
114179--114386	65	3.2	65	79	12	198	26	17	25	29	1.98
122876--122956	30	2.7	30	82	3	101	37	12	9	40	1.76
122881--122967	31	2.9	30	77	3	102	40	10	9	40	1.71
124275--124372	48	2.0	48	100	0	196	41	22	10	25	1.85
124815--124923	9	12.3	9	72	16	61	72	0	11	15	1.12
124835--124980	20	7.2	20	69	21	67	72	0	10	16	1.15
124837--124978	60	2.4	60	81	9	150	72	0	10	16	1.15
124858--124907	12	4.2	12	87	10	59	74	0	10	16	1.08
124843--124980	31	4.5	30	72	21	90	72	0	10	16	1.15
124844--124969	19	6.9	18	68	26	54	72	0	10	16	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125013--125071	21	2.8	20	72	23	57	76	0	3	20	0.93
125307--125348	3	13.7	3	95	5	75	66	0	0	33	0.92
126165--126321	9	17.8	9	72	15	89	72	1	9	16	1.17
126193--126321	4	29.5	4	71	18	80	72	1	9	17	1.19
126184--126315	26	5.2	27	75	16	113	72	0	9	16	1.15
139790--139847	3	20.3	3	76	16	61	62	0	1	36	1.06
139790--139842	8	6.5	8	79	16	56	62	0	1	35	1.06
144930--144970	17	2.3	18	87	4	57	75	4	0	19	0.98
146534--146608	25	3.0	25	96	0	132	26	14	20	38	1.91
146713--146759	3	16.0	3	87	12	71	68	0	0	31	0.90
146713--146767	13	4.0	14	83	9	69	70	0	0	29	0.87
146742--146775	13	2.5	13	90	4	50	79	0	0	20	0.73
159915--159954	17	2.4	17	87	8	55	75	5	0	20	0.99
161505--161579	25	3.0	25	96	0	132	26	14	20	38	1.91
161586--161656	22	3.5	22	69	25	75	8	19	43	28	1.80
161580--161679	37	2.7	37	100	0	200	7	19	45	29	1.76
161720--161762	3	15.0	3	90	9	72	69	0	0	30	0.88
161724--161770	15	3.4	14	91	5	69	74	0	0	25	0.82
161814--161853	20	2.0	20	90	9	64	47	0	0	52	1.00

Tables:   1

The End!