Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008712.1 Hibiscus syriacus cultivar Beakdansim tig00111764_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93006

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3483--3515
17
1.9
17
93
0
57
24
12
15
48
1.78
3528--3627
35
2.9
34
85
5
123
32
14
7
47
1.70
5508--5571
29
2.2
29
83
5
76
21
14
4
59
1.53
5523--5571
15
3.4
14
83
8
62
24
14
6
55
1.62
5528--5599
30
2.5
28
78
13
74
20
13
8
56
1.63
6373--6431
20
2.8
22
82
7
86
45
0
0
54
0.99
6382--6431
22
2.4
20
86
6
64
42
0
0
58
0.98
6373--6444
20
3.5
20
78
10
67
50
1
0
48
1.09
12010--12052
21
2.0
21
86
8
61
55
11
18
13
1.68
12082--12113
16
1.9
17
93
6
57
84
6
0
9
0.78
16293--16775
201
2.4
201
81
6
538
33
10
21
34
1.88
16444--16854
201
2.0
200
82
5
483
34
11
20
33
1.88
17624--17664
21
2.0
21
85
4
57
4
29
0
65
1.13
21968--22001
18
1.9
18
88
5
52
61
5
0
32
1.20
22920--22974
22
2.4
23
79
14
60
45
45
3
5
1.44
23878--23923
23
2.0
23
100
0
92
30
21
4
43
1.72
24228--24281
25
2.2
25
74
6
58
16
9
9
64
1.47
24383--24424
21
2.0
22
90
4
68
7
2
14
76
1.10
29928--29972
23
2.0
23
86
0
63
15
20
13
51
1.76
35116--35155
22
1.9
20
100
0
62
12
17
32
37
1.87
44948--44975
13
2.2
13
100
0
56
71
0
7
21
1.09
45727--45779
21
2.5
21
78
9
54
54
0
3
41
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48325--48368
6
7.3
6
100
0
88
0
15
52
31
1.44
48428--48544
20
5.7
20
86
9
164
17
18
29
34
1.95
48421--48544
42
3.0
40
88
6
178
17
18
27
36
1.94
48558--48609
19
2.7
19
84
3
59
11
19
26
42
1.85
58156--58185
13
2.4
13
94
5
53
43
0
30
26
1.55
63477--63531
23
2.4
23
96
0
101
63
7
7
21
1.44
70134--70176
21
2.0
22
86
4
61
27
16
16
39
1.90
77069--77105
17
2.1
17
90
5
56
40
0
0
59
0.97
77069--77106
14
2.4
16
87
12
53
39
0
0
60
0.97
77668--77718
23
2.3
22
86
3
66
43
1
9
45
1.48
79379--79412
18
1.9
18
88
5
52
26
32
26
14
1.95
86385--86418
12
2.8
12
100
0
68
23
35
0
41
1.55
87020--87068
23
2.2
22
82
10
55
16
20
0
63
1.31

Tables:   1

The End!