Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008713.1 Hibiscus syriacus cultivar Beakdansim tig00111766_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128496

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2436--2465
13
2.4
13
94
5
53
43
0
30
26
1.55
7746--7797
23
2.3
23
96
0
95
63
7
7
21
1.46
14401--14443
21
2.0
22
86
4
61
27
16
16
39
1.90
21367--21406
18
2.1
20
86
9
57
40
0
0
60
0.97
21977--22028
23
2.3
23
89
0
77
44
1
9
44
1.48
22616--22649
13
2.5
14
90
4
52
29
0
0
70
0.87
23696--23729
18
1.9
18
88
5
52
26
32
26
14
1.95
27488--27541
21
2.7
20
80
5
63
31
11
16
40
1.84
30810--30843
12
2.8
12
100
0
68
23
35
0
41
1.55
38814--38853
21
1.9
21
94
0
71
25
25
22
27
2.00
39264--39464
45
4.4
46
89
4
275
31
21
7
38
1.82
42510--42742
116
2.0
116
87
3
335
32
25
18
24
1.97
42828--42871
21
2.0
22
95
4
81
29
18
11
40
1.85
42846--43107
36
7.3
36
72
15
211
28
18
12
40
1.88
42959--43079
42
3.0
42
76
14
155
23
17
14
44
1.85
43120--43261
37
3.9
36
85
2
194
22
21
15
40
1.90
43020--43209
102
1.9
102
87
4
285
27
20
13
38
1.89
43120--43261
73
1.9
73
89
0
221
22
21
15
40
1.90
44915--44956
22
2.0
21
85
4
57
16
19
0
64
1.30
45712--45830
42
2.8
42
88
0
175
19
16
15
47
1.82
46019--46076
21
3.0
20
85
7
66
46
0
1
51
1.11
46038--46196
28
5.7
28
70
23
97
47
0
1
50
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46119--46196
29
2.8
28
81
13
97
43
0
2
53
1.14
46212--46381
90
1.9
86
81
9
200
51
4
0
44
1.22
46525--46576
20
2.5
20
84
6
68
32
11
11
44
1.77
46569--46640
15
4.9
15
86
1
101
36
18
8
37
1.81
46559--46640
30
2.8
30
88
1
112
35
15
8
40
1.78
48250--48374
51
2.5
51
88
1
180
16
36
30
17
1.92
48485--48525
10
4.1
10
84
12
57
31
29
0
39
1.57
48546--48574
14
2.1
14
93
6
51
27
6
0
65
1.18
50375--50414
18
2.2
18
95
0
71
25
30
22
22
1.99
50756--50796
3
13.7
3
94
0
73
34
29
34
2
1.71
53709--53836
51
2.5
51
89
1
195
16
30
35
17
1.92
57125--57159
15
2.5
14
86
13
54
37
20
20
22
1.95
58775--58838
31
2.1
31
87
0
92
51
10
9
28
1.68
60676--60830
64
2.4
65
80
4
172
28
18
20
33
1.95
66976--67032
22
2.6
22
94
0
96
26
28
28
17
1.98
67537--67685
64
2.3
64
82
4
194
28
18
18
34
1.94
71756--71809
27
2.0
28
85
10
76
66
3
0
29
1.09
71917--71961
21
2.1
21
84
8
56
64
4
2
28
1.25
74869--75158
144
2.0
144
96
0
535
31
20
34
13
1.91
78049--78169
51
2.5
49
85
10
151
29
21
23
25
1.99
78193--78313
51
2.4
50
80
2
134
19
30
31
18
1.96
78676--78739
18
3.6
18
73
23
71
51
29
14
4
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82721--82770
20
2.5
20
80
6
57
56
4
0
40
1.18
82939--83000
31
2.0
31
84
6
81
64
1
6
27
1.27
83383--83554
77
2.2
76
77
6
175
34
13
12
38
1.84
86776--86835
3
19.7
3
76
10
50
58
3
3
35
1.31
86759--86810
21
2.4
21
87
9
70
59
1
1
36
1.19
92367--92409
22
2.0
22
86
13
63
72
0
6
20
1.08
93956--94187
106
2.2
107
88
0
331
21
17
26
34
1.95
94598--94726
31
3.9
31
71
17
75
33
12
20
33
1.90
94500--94692
67
2.8
67
83
4
235
37
12
21
28
1.90
94647--94762
34
3.4
34
89
5
166
31
11
18
37
1.87
94802--95324
37
15.4
36
68
20
197
37
12
19
30
1.88
94930--94988
30
2.0
30
86
6
84
32
10
16
40
1.82
94943--95222
100
2.8
101
92
2
456
36
12
19
31
1.89
95007--95392
166
2.3
166
91
4
614
36
12
20
31
1.90
95109--95288
66
2.8
65
90
5
276
35
12
21
31
1.90
95172--95413
102
2.3
105
90
3
366
36
13
20
30
1.90
96614--96963
183
1.9
183
95
0
637
30
21
21
27
1.98
100907--100957
21
2.4
21
84
12
61
68
1
7
21
1.25
110904--110928
2
12.5
2
100
0
50
52
0
0
48
1.00
112084--112195
56
2.0
56
100
0
224
26
16
12
44
1.83
112099--112216
56
2.1
55
82
6
139
29
19
11
39
1.86
125190--125232
17
2.4
18
92
7
79
0
30
4
65
1.13

Tables:   1

The End!