genome.fa.s8714.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008714.1 Hibiscus syriacus cultivar Beakdansim tig00111767_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59186

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4106--4154	12	4.2	12	94	2	73	73	0	10	16	1.09
4106--4154	18	2.8	18	90	3	73	73	0	10	16	1.09
4649--4707	18	3.2	18	78	4	64	74	0	3	22	0.96
5132--5157	7	3.7	7	100	0	52	15	30	0	53	1.42
6133--6583	37	12.1	36	84	10	559	45	5	3	45	1.43
8655--8694	21	1.9	21	94	0	71	30	30	17	22	1.97
8801--8867	19	3.5	19	87	0	89	37	13	8	40	1.76
8932--8991	29	2.0	31	90	6	97	41	16	6	35	1.75
11487--11528	21	2.0	21	95	0	75	30	28	16	23	1.96
11634--11700	19	3.5	19	91	0	89	35	13	10	40	1.79
11765--11824	29	2.0	31	90	6	97	41	16	6	35	1.75
11909--11947	20	1.9	21	89	5	62	41	12	17	28	1.87
15631--15673	15	2.9	15	83	16	54	6	32	0	60	1.23
18038--18096	21	2.7	22	76	5	75	22	25	20	32	1.98
18085--18141	20	2.8	20	97	0	105	36	15	21	26	1.93
18128--18191	20	3.2	20	88	0	92	25	21	23	29	1.99
19012--19065	24	2.2	24	90	0	81	22	18	18	40	1.91
19268--19294	14	1.9	14	100	0	54	44	29	18	7	1.77
20714--20800	20	4.5	19	88	5	113	37	26	18	17	1.92
20725--20800	20	3.8	20	92	0	125	38	25	18	18	1.93
21018--21067	18	2.8	18	100	0	100	42	6	20	32	1.76
22714--22820	20	5.4	20	82	3	110	46	22	15	14	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23206--23248	22	2.0	22	85	0	59	18	11	44	25	1.84
23423--23578	20	7.7	20	74	9	109	28	21	24	25	1.99
23749--23899	80	1.9	81	87	1	223	25	9	13	51	1.70
24149--24260	58	1.9	58	81	5	136	34	15	9	40	1.80
25768--25797	2	15.0	2	100	0	60	50	0	0	50	1.00
27863--27967	34	3.1	34	85	6	126	50	4	0	43	1.29
28684--28776	21	4.5	21	78	4	100	39	18	24	17	1.91
28684--28776	41	2.3	41	100	0	186	39	18	24	17	1.91
28703--28837	41	3.3	41	83	4	139	37	21	21	19	1.94
28807--28859	20	2.7	20	93	0	88	24	28	20	26	1.99
29433--29598	20	9.1	19	74	16	136	12	22	22	43	1.86
29438--29514	39	2.0	39	87	5	111	9	19	25	45	1.80
29486--29573	33	2.6	33	92	1	140	11	25	25	38	1.89
31593--31715	42	2.9	42	79	2	113	22	35	17	23	1.95
31649--31715	21	3.2	21	66	6	55	23	35	20	19	1.95
33075--33110	14	2.6	14	95	0	63	30	0	25	44	1.54
33289--33439	19	8.7	19	63	21	71	15	22	19	41	1.90
33293--33419	33	3.9	32	85	8	184	15	22	18	42	1.89
33286--33418	66	2.0	66	95	0	239	17	22	18	41	1.90
33641--33665	12	2.1	12	100	0	50	8	16	16	60	1.58
36744--36806	33	1.9	33	90	0	99	44	19	22	14	1.86
37022--37070	20	2.5	20	96	0	89	34	24	22	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37117--37184	19	3.6	19	95	0	127	13	22	16	48	1.80
39186--39252	19	3.5	19	81	4	80	38	23	22	14	1.92
39241--39298	14	3.9	14	79	16	62	50	20	17	12	1.78
39225--39315	32	2.8	33	91	3	148	48	19	18	13	1.81
39332--39389	14	3.9	14	79	16	71	8	17	25	48	1.75
39327--39405	32	2.4	33	95	2	142	10	18	24	46	1.80
39327--39405	14	4.8	17	71	22	62	10	18	24	46	1.80
39390--39433	20	2.2	20	84	4	54	20	25	18	36	1.95
41591--41634	22	2.0	22	95	0	79	18	15	45	20	1.85
41822--41874	20	2.7	20	90	0	88	24	20	26	28	1.99
41842--41919	41	1.9	41	83	0	102	23	16	21	38	1.93
41802--41916	20	5.7	19	77	9	77	24	17	23	34	1.96
41905--41997	20	4.5	21	78	4	100	17	24	18	39	1.91
41885--41997	41	2.8	41	91	2	147	19	23	19	38	1.94
44196--44287	43	2.1	43	86	4	123	19	4	21	54	1.61
44416--44493	31	2.5	31	85	0	111	34	12	25	26	1.92
45057--45171	56	2.1	56	88	0	167	29	23	17	29	1.97
45574--45637	31	2.1	31	91	5	103	23	25	14	37	1.92
48651--48714	32	2.0	32	84	6	85	25	17	7	50	1.72
51058--51089	3	10.7	3	100	0	64	34	65	0	0	0.93
54030--54230	104	1.9	105	89	2	316	37	13	10	37	1.80
54948--54993	21	2.2	21	88	0	65	34	28	21	15	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55025--55069	22	2.0	23	82	4	56	31	28	28	11	1.91
56641--56698	23	2.6	23	89	5	84	20	27	27	24	1.99

Tables:   1

The End!