genome.fa.s8715.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008715.1 Hibiscus syriacus cultivar Beakdansim tig00111768_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43943

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1816--1878	33	1.9	33	90	0	99	44	19	22	14	1.86
2089--2138	20	2.4	21	93	3	84	34	24	24	18	1.96
2089--2147	20	2.9	20	87	2	73	37	20	23	18	1.94
2185--2247	19	3.5	18	89	6	101	14	22	17	46	1.84
4222--4288	19	3.5	19	81	4	80	38	23	22	14	1.92
4277--4334	14	3.9	14	79	16	71	48	25	17	8	1.75
4261--4339	32	2.4	33	95	2	142	46	24	18	10	1.80
4351--4435	30	2.7	31	87	7	118	12	20	20	47	1.82
4368--4422	13	3.9	13	76	17	56	12	18	21	47	1.82
4423--4466	20	2.2	20	84	4	54	20	25	18	36	1.95
6609--6652	22	2.0	22	95	0	79	18	15	45	20	1.85
6840--6892	20	2.7	20	90	0	88	24	20	26	28	1.99
6860--6937	41	1.9	41	83	0	102	23	16	21	38	1.93
6820--6934	20	5.7	19	77	9	77	24	17	23	34	1.96
6923--7015	20	4.5	21	78	4	100	17	24	18	39	1.91
6903--7015	41	2.8	41	91	2	147	19	23	19	38	1.94
9210--9301	43	2.1	43	86	4	123	19	4	21	54	1.61
9430--9507	31	2.5	31	85	0	111	34	12	25	26	1.92
10071--10185	56	2.1	56	88	0	167	29	23	17	29	1.97
10591--10654	31	2.1	31	91	5	103	23	25	14	37	1.92
13682--13745	32	2.0	32	84	6	85	25	17	7	50	1.72
16100--16138	3	13.0	3	100	0	78	33	66	0	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19112--19313	104	1.9	105	90	1	325	37	13	10	38	1.80
20043--20088	21	2.2	21	88	0	65	34	28	21	15	1.94
21770--21829	23	2.6	23	94	0	102	20	28	28	23	1.99
27205--27352	76	2.0	75	90	4	235	29	2	9	58	1.43
27326--27387	19	3.2	19	76	2	61	32	0	11	56	1.35
35633--35794	73	2.2	74	85	6	222	30	2	11	55	1.48
36408--36477	22	3.3	20	75	16	63	20	5	2	71	1.19
36505--36565	22	3.0	20	73	20	54	27	3	0	68	1.05
42109--42137	12	2.5	12	94	5	51	6	6	0	86	0.72
42918--42997	38	2.1	39	88	4	119	40	13	12	33	1.83

Tables:   1

The End!