Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008716.1 Hibiscus syriacus cultivar Beakdansim tig00111769_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5677467
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 24
Found at i:17 original size:7 final size:7
Alignment explanation
Indices: 1--8008 Score: 14264
Period size: 7 Copynumber: 1168.7 Consensus size: 7
1 AACCC-A
1 AACCCTA
7 AACCCTA
1 AACCCTA
*
14 AACCCAA
1 AACCCTA
*
21 AACCCGA
1 AACCCTA
28 AACCC-A
1 AACCCTA
34 AACCCTA
1 AACCCTA
41 AACCCTA
1 AACCCTA
48 AACCCTA
1 AACCCTA
55 AACCCTA
1 AACCCTA
62 AACCCT-
1 AACCCTA
68 AACCCTA
1 AACCCTA
75 AACCCTA
1 AACCCTA
82 AACCCTA
1 AACCCTA
*
89 AACCC-G
1 AACCCTA
95 AACCCTA
1 AACCCTA
102 AACCCTA
1 AACCCTA
109 AACCCTA
1 AACCCTA
116 AACCCTA
1 AACCCTA
123 AACCCTA
1 AACCCTA
130 AACCCTA
1 AACCCTA
*
137 AACCCGA
1 AACCCTA
144 AACCCTA
1 AACCCTA
151 AACCCTA
1 AACCCTA
158 AACCCTA
1 AACCCTA
165 AACCCTA
1 AACCCTA
172 AACCCTA
1 AACCCTA
179 AA-CCTA
1 AACCCTA
185 AACCCTA
1 AACCCTA
192 AACCCTA
1 AACCCTA
*
199 AA-CCGA
1 AACCCTA
205 AA-CCTA
1 AACCCTA
211 AACCCTA
1 AACCCTA
218 AACCCTA
1 AACCCTA
225 AACCCTA
1 AACCCTA
232 AACCCTA
1 AACCCTA
239 AACCCTA
1 AACCCTA
246 AACCCTA
1 AACCCTA
253 AACCCT-
1 AACCCTA
259 AACCCTA
1 AACCCTA
266 AACCC--
1 AACCCTA
271 AACCCTA
1 AACCCTA
278 AACCCTA
1 AACCCTA
285 AACCCTA
1 AACCCTA
292 AACCCTAA
1 AACCCT-A
300 CAACCCTA
1 -AACCCTA
308 AACCCTA
1 AACCCTA
315 AACCCTA
1 AACCCTA
322 AACCCTA
1 AACCCTA
329 AACCCTA
1 AACCCTA
336 AACCCTA
1 AACCCTA
343 AACCCTA
1 AACCCTA
350 AACCCTA
1 AACCCTA
357 AACCCTA
1 AACCCTA
364 AACCCT-
1 AACCCTA
370 AACCCTA
1 AACCCTA
377 AACCCTA
1 AACCCTA
384 AACCCTA
1 AACCCTA
391 AACCCT-
1 AACCCTA
397 AACCCTA
1 AACCCTA
404 AACCCTA
1 AACCCTA
411 AACCCTA
1 AACCCTA
418 AACCCTA
1 AACCCTA
425 AACCCTA
1 AACCCTA
*
432 AA-CCGA
1 AACCCTA
438 AACCCTA
1 AACCCTA
445 AACCCTA
1 AACCCTA
452 AACCCTA
1 AACCCTA
459 AACCCT-
1 AACCCTA
465 AACCCTA
1 AACCCTA
472 AACCCTA
1 AACCCTA
479 AACCCTA
1 AACCCTA
486 AACCCTA
1 AACCCTA
493 AACCCTA
1 AACCCTA
500 AACCCTA
1 AACCCTA
507 AACCCTA
1 AACCCTA
514 AACCCTA
1 AACCCTA
521 AACCCTA
1 AACCCTA
528 AACCCTA
1 AACCCTA
535 AA-CCTA
1 AACCCTA
541 AACCCTA
1 AACCCTA
548 AACCCTA
1 AACCCTA
*
555 AA-CC-G
1 AACCCTA
560 AACCCT-
1 AACCCTA
566 AACCCTA
1 AACCCTA
573 AACCCTA
1 AACCCTA
580 AACCCT-
1 AACCCTA
586 AACCCTA
1 AACCCTA
593 AACCCTA
1 AACCCTA
*
600 AACCCGA
1 AACCCTA
607 AACCCTA
1 AACCCTA
614 AACCCTA
1 AACCCTA
621 AACCCTA
1 AACCCTA
628 AACCCTA
1 AACCCTA
635 AACCCTA
1 AACCCTA
642 AACCCTA
1 AACCCTA
649 AACCCTA
1 AACCCTA
656 AACCCTA
1 AACCCTA
663 AACCCTA
1 AACCCTA
670 AACCCTA
1 AACCCTA
677 AACCCTA
1 AACCCTA
684 AACCCTA
1 AACCCTA
691 AACCCTA
1 AACCCTA
698 AACCCCTA
1 AA-CCCTA
706 AACCCT-
1 AACCCTA
712 AACCCTA
1 AACCCTA
719 AACCCTA
1 AACCCTA
726 AACCCTA
1 AACCCTA
*
733 AACCCGA
1 AACCCTA
740 AA-CCTA
1 AACCCTA
746 AACCCTA
1 AACCCTA
753 AACCCTA
1 AACCCTA
760 AACCCTA
1 AACCCTA
767 AACCCTA
1 AACCCTA
774 AACCCTA
1 AACCCTA
781 AACCCTA
1 AACCCTA
788 AA-CCT-
1 AACCCTA
793 AACCCTA
1 AACCCTA
800 AACCCTA
1 AACCCTA
807 AACCCTA
1 AACCCTA
814 AACCCTA
1 AACCCTA
821 AACCCTA
1 AACCCTA
828 AA-CCTA
1 AACCCTA
834 AACCCTA
1 AACCCTA
841 AACCCTA
1 AACCCTA
848 AACCCTA
1 AACCCTA
855 AACCCTA
1 AACCCTA
862 AACCCTA
1 AACCCTA
*
869 AACCCGA
1 AACCCTA
876 AACCCTA
1 AACCCTA
883 AACCCTA
1 AACCCTA
890 AACCCTA
1 AACCCTA
897 AACCCTA
1 AACCCTA
904 AACCCTA
1 AACCCTA
911 AACCCTA
1 AACCCTA
918 AACCCTA
1 AACCCTA
925 AACCCTA
1 AACCCTA
932 AACCCTA
1 AACCCTA
939 AACCCTA
1 AACCCTA
946 AACCCTA
1 AACCCTA
953 AACCCTA
1 AACCCTA
960 AACCCTA
1 AACCCTA
967 AA-CCTA
1 AACCCTA
973 AA-CCTA
1 AACCCTA
979 AACCCTA
1 AACCCTA
986 AACCCTA
1 AACCCTA
993 AACCCT-
1 AACCCTA
999 AACCCTA
1 AACCCTA
1006 AACCCTA
1 AACCCTA
1013 AACCCTA
1 AACCCTA
1020 AACCCTA
1 AACCCTA
1027 AACCCTA
1 AACCCTA
1034 AACCCTA
1 AACCCTA
1041 AACCCTA
1 AACCCTA
1048 AACCCTA
1 AACCCTA
1055 AACCCTAA
1 AACCCT-A
1063 AACCCTA
1 AACCCTA
1070 AACCCTA
1 AACCCTA
1077 AACCCTA
1 AACCCTA
1084 AACCCTA
1 AACCCTA
1091 AACCCTA
1 AACCCTA
1098 AACCCTA
1 AACCCTA
*
1105 AACCCGA
1 AACCCTA
1112 AACCCTA
1 AACCCTA
1119 AACCCTA
1 AACCCTA
1126 AACCCTA
1 AACCCTA
1133 AACCCTA
1 AACCCTA
1140 AACCCTA
1 AACCCTA
1147 AACCCTA
1 AACCCTA
1154 AACCCTA
1 AACCCTA
1161 AACCCTA
1 AACCCTA
1168 AACCCTA
1 AACCCTA
1175 AACCCTA
1 AACCCTA
1182 AACCCTA
1 AACCCTA
1189 AACCCTA
1 AACCCTA
1196 AACCCTA
1 AACCCTA
1203 AACCCTA
1 AACCCTA
1210 AACCCTA
1 AACCCTA
*
1217 AACCCGA
1 AACCCTA
1224 AACCCTA
1 AACCCTA
1231 AACCCTA
1 AACCCTA
1238 AACCCTA
1 AACCCTA
1245 AACCCTA
1 AACCCTA
1252 AACCCTA
1 AACCCTA
1259 AACCCTA
1 AACCCTA
1266 AACCCT-
1 AACCCTA
1272 AACCCT-
1 AACCCTA
1278 AACCCTA
1 AACCCTA
1285 AACCCTA
1 AACCCTA
1292 AACCCT-
1 AACCCTA
1298 AACCCTA
1 AACCCTA
1305 AACCCTA
1 AACCCTA
1312 AACCCTA
1 AACCCTA
1319 AACCCT-
1 AACCCTA
1325 -ACCCTA
1 AACCCTA
1331 AACCCTA
1 AACCCTA
1338 AACCCTA
1 AACCCTA
1345 AACCCTA
1 AACCCTA
1352 AACCCTA
1 AACCCTA
1359 AACCCTA
1 AACCCTA
1366 AACCCTA
1 AACCCTA
1373 AACCCTA
1 AACCCTA
1380 AACCCTA
1 AACCCTA
1387 AACCCTA
1 AACCCTA
1394 AACCCTA
1 AACCCTA
1401 AACCCTA
1 AACCCTA
1408 AACCCTA
1 AACCCTA
1415 AACCCTA
1 AACCCTA
1422 AA-CCTA
1 AACCCTA
1428 AACCCTA
1 AACCCTA
1435 AACCCT-
1 AACCCTA
1441 AACCCTA
1 AACCCTA
1448 AACCCTA
1 AACCCTA
1455 AACCCTA
1 AACCCTA
1462 AACCCTA
1 AACCCTA
1469 AACCCTA
1 AACCCTA
1476 AACCCTA
1 AACCCTA
1483 AACCCTA
1 AACCCTA
1490 AACCCTA
1 AACCCTA
1497 AACCCTA
1 AACCCTA
1504 AACCCTA
1 AACCCTA
1511 AACCC-A
1 AACCCTA
1517 AACCCTA
1 AACCCTA
1524 AACCCTA
1 AACCCTA
1531 AACCCTA
1 AACCCTA
1538 AACCCTA
1 AACCCTA
1545 AA-CCTA
1 AACCCTA
1551 AACCCTA
1 AACCCTA
1558 AACCCT-
1 AACCCTA
1564 AA-CCTA
1 AACCCTA
1570 AACCCTA
1 AACCCTA
1577 AACCCTA
1 AACCCTA
1584 AACCCTA
1 AACCCTA
1591 AACCCTA
1 AACCCTA
1598 AACCCTA
1 AACCCTA
1605 AACCCTA
1 AACCCTA
1612 AACCCTA
1 AACCCTA
1619 AA-CCTA
1 AACCCTA
1625 AACCCTA
1 AACCCTA
1632 AACCCTA
1 AACCCTA
1639 AACCCTA
1 AACCCTA
1646 AACCCTA
1 AACCCTA
1653 AACCCTA
1 AACCCTA
1660 AACCCTA
1 AACCCTA
1667 AACCCTA
1 AACCCTA
1674 AACCCTA
1 AACCCTA
1681 AACCCTA
1 AACCCTA
1688 AACCCTA
1 AACCCTA
1695 AACCCTA
1 AACCCTA
1702 AACCCTA
1 AACCCTA
1709 AA-CCTA
1 AACCCTA
1715 AACCCCTA
1 AA-CCCTA
1723 AACCCTA
1 AACCCTA
1730 AACCCTA
1 AACCCTA
1737 AACCCTA
1 AACCCTA
1744 AACCCTA
1 AACCCTA
*
1751 AACCCGA
1 AACCCTA
1758 AACCCTA
1 AACCCTA
1765 AACCCTA
1 AACCCTA
1772 AACCCTA
1 AACCCTA
1779 AACCCTA
1 AACCCTA
1786 AACCCT-
1 AACCCTA
1792 AACCCTA
1 AACCCTA
1799 AACCCTA
1 AACCCTA
1806 AACCCTA
1 AACCCTA
1813 AACCCTA
1 AACCCTA
1820 AACCCTA
1 AACCCTA
1827 AACCCTA
1 AACCCTA
1834 AACCCTA
1 AACCCTA
1841 AACCCTA
1 AACCCTA
1848 AACCCCTA
1 AA-CCCTA
1856 AACCCT-
1 AACCCTA
1862 AACCCTA
1 AACCCTA
1869 AACCCTA
1 AACCCTA
1876 AACCCTA
1 AACCCTA
1883 AACCCTA
1 AACCCTA
1890 AACCCTA
1 AACCCTA
1897 AACCCT-
1 AACCCTA
1903 AACCCTA
1 AACCCTA
1910 AACCCTA
1 AACCCTA
1917 AACCCTA
1 AACCCTA
1924 AACCCTA
1 AACCCTA
1931 AACCCCCTA
1 AA--CCCTA
1940 AACCCTA
1 AACCCTA
1947 AACCCTA
1 AACCCTA
1954 AACCCTA
1 AACCCTA
1961 AACCCTA
1 AACCCTA
1968 AACCCTA
1 AACCCTA
1975 AA-CCTA
1 AACCCTA
1981 AACCCT-
1 AACCCTA
1987 AACCCTA
1 AACCCTA
1994 AACCCTA
1 AACCCTA
2001 AACCCTA
1 AACCCTA
2008 AACCCTA
1 AACCCTA
2015 AACCCT-
1 AACCCTA
2021 AA-CCTA
1 AACCCTA
2027 AACCCTA
1 AACCCTA
2034 AACCCTA
1 AACCCTA
2041 AACCCTA
1 AACCCTA
2048 AACCCTA
1 AACCCTA
2055 AACCCTA
1 AACCCTA
2062 AACCCTA
1 AACCCTA
2069 AACCCTA
1 AACCCTA
2076 AA-CCTA
1 AACCCTA
2082 AACCCTA
1 AACCCTA
2089 AACCCTA
1 AACCCTA
2096 AACCCTA
1 AACCCTA
2103 AACCCTA
1 AACCCTA
2110 AACCCT-
1 AACCCTA
2116 AACCCTA
1 AACCCTA
2123 AACCCTA
1 AACCCTA
2130 AACCCTA
1 AACCCTA
2137 AACCCTA
1 AACCCTA
2144 AACCCTA
1 AACCCTA
2151 AACCCTA
1 AACCCTA
2158 AACCCTA
1 AACCCTA
2165 AACCCTA
1 AACCCTA
2172 AACCCTA
1 AACCCTA
2179 AACCCTA
1 AACCCTA
2186 AACCCTA
1 AACCCTA
2193 AACCCTA
1 AACCCTA
2200 AACCCTA
1 AACCCTA
2207 AACCC-A
1 AACCCTA
2213 AACCCTA
1 AACCCTA
2220 AACCCTA
1 AACCCTA
2227 AA-CCT-
1 AACCCTA
2232 AACCCTA
1 AACCCTA
2239 AACCCTA
1 AACCCTA
*
2246 AACCCGA
1 AACCCTA
2253 AA-CCTA
1 AACCCTA
2259 AACCCTA
1 AACCCTA
2266 AACCCTA
1 AACCCTA
2273 AACCCTA
1 AACCCTA
2280 AACCCTA
1 AACCCTA
2287 AACCCTA
1 AACCCTA
2294 AACCCTA
1 AACCCTA
2301 AACCCTA
1 AACCCTA
2308 AACCCTA
1 AACCCTA
2315 AACCCTA
1 AACCCTA
2322 AACCCTA
1 AACCCTA
2329 AACCCTA
1 AACCCTA
2336 AACCCTA
1 AACCCTA
*
2343 AAACCTA
1 AACCCTA
2350 AA--CTA
1 AACCCTA
2355 AA-CCTA
1 AACCCTA
2361 AACCCTA
1 AACCCTA
2368 AACCCTA
1 AACCCTA
2375 AACCCTA
1 AACCCTA
2382 AACCCTA
1 AACCCTA
2389 AACCCTA
1 AACCCTA
2396 AACCCT-
1 AACCCTA
2402 AACCCTA
1 AACCCTA
2409 AACCCTA
1 AACCCTA
2416 AACCCTA
1 AACCCTA
2423 AACCCTA
1 AACCCTA
2430 AACCCTA
1 AACCCTA
2437 AACCCTA
1 AACCCTA
2444 AACCCTA
1 AACCCTA
2451 AACCCTA
1 AACCCTA
2458 AACCCTA
1 AACCCTA
2465 AACCCTA
1 AACCCTA
2472 AACCCTA
1 AACCCTA
2479 AACCCT-
1 AACCCTA
2485 AACCCTA
1 AACCCTA
2492 AACCCTA
1 AACCCTA
2499 AACCCTA
1 AACCCTA
2506 AACCCTA
1 AACCCTA
2513 AA-CCTA
1 AACCCTA
2519 AACCCT-
1 AACCCTA
2525 AACCCTA
1 AACCCTA
2532 AACCCTA
1 AACCCTA
2539 AACCCTA
1 AACCCTA
2546 AACCCTA
1 AACCCTA
2553 AACCCTA
1 AACCCTA
2560 AACCCTA
1 AACCCTA
2567 AACCCTA
1 AACCCTA
2574 AACCCTA
1 AACCCTA
2581 AACCCTA
1 AACCCTA
2588 AACCCTA
1 AACCCTA
2595 AACCCTA
1 AACCCTA
2602 AACCCT-
1 AACCCTA
2608 AACCCTA
1 AACCCTA
2615 AACCCTA
1 AACCCTA
2622 AACCCTA
1 AACCCTA
2629 AACCCT-
1 AACCCTA
2635 AACCCTA
1 AACCCTA
2642 AACCCTA
1 AACCCTA
2649 AACCCT-
1 AACCCTA
2655 AACCCTA
1 AACCCTA
2662 AACCCTA
1 AACCCTA
2669 AACCCT-
1 AACCCTA
2675 AACCCTA
1 AACCCTA
2682 AACCCTA
1 AACCCTA
2689 AACCCTA
1 AACCCTA
2696 AACCCTA
1 AACCCTA
2703 AACCCTA
1 AACCCTA
2710 AACCCTA
1 AACCCTA
2717 AACCCTA
1 AACCCTA
2724 AACCCT-
1 AACCCTA
2730 AACCCTA
1 AACCCTA
2737 AACCCTA
1 AACCCTA
2744 AACCCTA
1 AACCCTA
2751 AACCCTA
1 AACCCTA
2758 AACCCTA
1 AACCCTA
2765 AACCCTA
1 AACCCTA
2772 AACCCTA
1 AACCCTA
2779 AACCCTA
1 AACCCTA
2786 AACCCTA
1 AACCCTA
2793 AACCCTA
1 AACCCTA
2800 AACCCTA
1 AACCCTA
2807 AACCCT-
1 AACCCTA
2813 AACCCTA
1 AACCCTA
2820 AACCCTA
1 AACCCTA
2827 AACCCTA
1 AACCCTA
2834 AACCCT-
1 AACCCTA
2840 AACCCTA
1 AACCCTA
2847 AACCCTA
1 AACCCTA
2854 AA-CCT-
1 AACCCTA
2859 AACCCTA
1 AACCCTA
2866 AACCCTA
1 AACCCTA
2873 AACCCTA
1 AACCCTA
2880 AACCCTA
1 AACCCTA
2887 AACCC-A
1 AACCCTA
2893 AACCCTA
1 AACCCTA
2900 AACCCTA
1 AACCCTA
2907 AACCCTA
1 AACCCTA
2914 AACCCTA
1 AACCCTA
2921 AACCCTA
1 AACCCTA
2928 AACCCTA
1 AACCCTA
2935 AACCCTA
1 AACCCTA
2942 AACCCTA
1 AACCCTA
2949 AACCCTA
1 AACCCTA
2956 AACCCTA
1 AACCCTA
2963 AACCCTA
1 AACCCTA
2970 AACCCTA
1 AACCCTA
2977 AACCCTA
1 AACCCTA
2984 AACCCTA
1 AACCCTA
2991 AACCCTA
1 AACCCTA
2998 AACCCTA
1 AACCCTA
3005 AACCCTA
1 AACCCTA
3012 AA-CCTA
1 AACCCTA
3018 AACCCTA
1 AACCCTA
3025 AACCCTA
1 AACCCTA
3032 AACCCTA
1 AACCCTA
3039 AACCCTA
1 AACCCTA
3046 AACCCTA
1 AACCCTA
3053 AACCCTA
1 AACCCTA
3060 AACCCTA
1 AACCCTA
3067 AACCCTA
1 AACCCTA
3074 AACCCTA
1 AACCCTA
3081 AACCCT-
1 AACCCTA
3087 AACCCTA
1 AACCCTA
3094 AACCCTA
1 AACCCTA
3101 AACCCTA
1 AACCCTA
3108 AACCCTA
1 AACCCTA
3115 AACCC--
1 AACCCTA
3120 AACCCTA
1 AACCCTA
3127 AA-CCTA
1 AACCCTA
3133 AACCCTA
1 AACCCTA
3140 AACCCTA
1 AACCCTA
3147 AACCCTA
1 AACCCTA
3154 AACCCTA
1 AACCCTA
3161 AACCCTA
1 AACCCTA
3168 AACCCTA
1 AACCCTA
3175 AACCCTA
1 AACCCTA
*
3182 AACCCGA
1 AACCCTA
3189 AACCCTA
1 AACCCTA
3196 AACCCTA
1 AACCCTA
3203 AACCCT-
1 AACCCTA
3209 AACCCTA
1 AACCCTA
3216 AACCCTA
1 AACCCTA
3223 AACCCTA
1 AACCCTA
3230 AACCCTA
1 AACCCTA
3237 AACCCTA
1 AACCCTA
3244 AACCCTA
1 AACCCTA
3251 AACCCTA
1 AACCCTA
3258 AACCCTA
1 AACCCTA
3265 AACCCTA
1 AACCCTA
3272 AACCCTA
1 AACCCTA
3279 AACCCTA
1 AACCCTA
3286 AACCCTA
1 AACCCTA
3293 AACCCT-
1 AACCCTA
3299 AACCCTA
1 AACCCTA
3306 AACCCTA
1 AACCCTA
3313 AACCCTA
1 AACCCTA
3320 AACCCTA
1 AACCCTA
3327 AACCCTA
1 AACCCTA
3334 AACCCTA
1 AACCCTA
3341 AACCCTA
1 AACCCTA
3348 AACCCTA
1 AACCCTA
3355 AACCCTA
1 AACCCTA
3362 AACCCTA
1 AACCCTA
3369 AACCCTA
1 AACCCTA
3376 AACCCTA
1 AACCCTA
3383 AACCCTA
1 AACCCTA
3390 AACCCTA
1 AACCCTA
3397 AACCCTA
1 AACCCTA
3404 AACCCTA
1 AACCCTA
3411 AACCCT-
1 AACCCTA
3417 AACCCTA
1 AACCCTA
3424 AACCCTA
1 AACCCTA
3431 AACCCTA
1 AACCCTA
3438 AACCCTA
1 AACCCTA
3445 AACCCTA
1 AACCCTA
3452 AACCCTA
1 AACCCTA
3459 AACCCTA
1 AACCCTA
3466 AACCCTA
1 AACCCTA
3473 AACCCTA
1 AACCCTA
3480 AACCCTA
1 AACCCTA
3487 AACCCTA
1 AACCCTA
3494 AACCCTA
1 AACCCTA
3501 AACCCTA
1 AACCCTA
3508 AACCCTA
1 AACCCTA
3515 AACCCTA
1 AACCCTA
3522 AACCCTA
1 AACCCTA
3529 AACCCTA
1 AACCCTA
3536 AACCCTA
1 AACCCTA
3543 AACCCTA
1 AACCCTA
3550 AACCCTA
1 AACCCTA
3557 AA-CCTA
1 AACCCTA
3563 AACCCTA
1 AACCCTA
3570 AACCCTA
1 AACCCTA
3577 AACCCTA
1 AACCCTA
3584 AACCCTA
1 AACCCTA
3591 AACCC-A
1 AACCCTA
3597 AACCCTA
1 AACCCTA
3604 AACCCTA
1 AACCCTA
3611 AACCCTA
1 AACCCTA
3618 AACCCTA
1 AACCCTA
3625 AACCCTA
1 AACCCTA
3632 AACCCTA
1 AACCCTA
3639 AACCCTA
1 AACCCTA
3646 AACCCTA
1 AACCCTA
3653 AACCCT-
1 AACCCTA
3659 AACCC--
1 AACCCTA
3664 AACCCTA
1 AACCCTA
3671 AACCCT-
1 AACCCTA
3677 AACCCTA
1 AACCCTA
3684 AACCCTA
1 AACCCTA
3691 AACCCTA
1 AACCCTA
3698 AACCCT-
1 AACCCTA
3704 AA-CCTA
1 AACCCTA
3710 AACCCTA
1 AACCCTA
3717 AACCCTA
1 AACCCTA
3724 AACCC-A
1 AACCCTA
3730 AACCCTA
1 AACCCTA
3737 AACCCTA
1 AACCCTA
3744 AACCCT-
1 AACCCTA
3750 AACCCTA
1 AACCCTA
3757 AACCCTA
1 AACCCTA
3764 AACCCT-
1 AACCCTA
3770 AACCCTA
1 AACCCTA
3777 AACCCTA
1 AACCCTA
3784 AACCCTA
1 AACCCTA
3791 AACCCT-
1 AACCCTA
3797 AACCCTA
1 AACCCTA
3804 AACCCT-
1 AACCCTA
3810 AACCCT-
1 AACCCTA
3816 AACCCT-
1 AACCCTA
3822 AACCCTA
1 AACCCTA
3829 AACCCTA
1 AACCCTA
3836 AACCCT-
1 AACCCTA
3842 AACCCTA
1 AACCCTA
3849 AA-CCT-
1 AACCCTA
3854 AACCCTA
1 AACCCTA
3861 AACCCTA
1 AACCCTA
3868 AACCCTA
1 AACCCTA
3875 AACCCTA
1 AACCCTA
3882 AACCCTA
1 AACCCTA
3889 AACCCTA
1 AACCCTA
3896 AACCCTA
1 AACCCTA
3903 AACCCTA
1 AACCCTA
3910 AACCCTA
1 AACCCTA
3917 AACCCTA
1 AACCCTA
3924 AACCCT-
1 AACCCTA
3930 AACCCT-
1 AACCCTA
3936 AACCCTA
1 AACCCTA
3943 AACCCTA
1 AACCCTA
3950 AACCCT-
1 AACCCTA
3956 AACCCT-
1 AACCCTA
3962 AACCCTA
1 AACCCTA
3969 AACCCTA
1 AACCCTA
3976 AACCC-A
1 AACCCTA
3982 AACCCTA
1 AACCCTA
3989 AACCCTA
1 AACCCTA
3996 AACCCT-
1 AACCCTA
4002 AACCCTA
1 AACCCTA
4009 AACCCTA
1 AACCCTA
4016 AACCCTA
1 AACCCTA
4023 AACCCTA
1 AACCCTA
4030 AACCCTA
1 AACCCTA
4037 AACCCTA
1 AACCCTA
4044 AACCCTA
1 AACCCTA
4051 AACCCTA
1 AACCCTA
4058 AACCCTA
1 AACCCTA
4065 AACCCTA
1 AACCCTA
4072 AACCCTA
1 AACCCTA
4079 AACCCTA
1 AACCCTA
4086 AACCCTA
1 AACCCTA
4093 AACCCTA
1 AACCCTA
4100 AACCCTA
1 AACCCTA
*
4107 AACCC-C
1 AACCCTA
4113 AACCCTA
1 AACCCTA
4120 AACCCTA
1 AACCCTA
4127 AACCCT-
1 AACCCTA
4133 AA-CCTA
1 AACCCTA
4139 AACCCTA
1 AACCCTA
4146 AACCCT-
1 AACCCTA
4152 AACCCTA
1 AACCCTA
4159 AACCCTA
1 AACCCTA
4166 AACCCTA
1 AACCCTA
4173 AACCCTA
1 AACCCTA
4180 AACCCTA
1 AACCCTA
4187 AACCCTA
1 AACCCTA
4194 AACCCTA
1 AACCCTA
4201 AACCCTA
1 AACCCTA
4208 AACCCTA
1 AACCCTA
4215 AACCCTA
1 AACCCTA
4222 AA-CC--
1 AACCCTA
4226 AACCCTA
1 AACCCTA
4233 AACCCTA
1 AACCCTA
4240 AACCCTA
1 AACCCTA
4247 AACCCTA
1 AACCCTA
4254 AACCCTA
1 AACCCTA
4261 AACCCTA
1 AACCCTA
4268 AACCCTA
1 AACCCTA
4275 AACCC-A
1 AACCCTA
4281 AACCCTA
1 AACCCTA
4288 AACCCTA
1 AACCCTA
4295 AACCCTA
1 AACCCTA
4302 AACCCTA
1 AACCCTA
4309 AACCCTA
1 AACCCTA
4316 AACCCTA
1 AACCCTA
4323 AACCCTA
1 AACCCTA
4330 AACCCTA
1 AACCCTA
4337 AACCCT-
1 AACCCTA
4343 AACCCTA
1 AACCCTA
4350 AACCCTA
1 AACCCTA
4357 AACCCTA
1 AACCCTA
4364 AACCCTA
1 AACCCTA
4371 AACCCCTA
1 AA-CCCTA
4379 AACCCTA
1 AACCCTA
4386 AACCCTA
1 AACCCTA
4393 AACCCT-
1 AACCCTA
4399 AACCCTA
1 AACCCTA
4406 AACCCT-
1 AACCCTA
4412 AACCCTA
1 AACCCTA
4419 AACCCTA
1 AACCCTA
4426 AACCCTA
1 AACCCTA
4433 AACCCTA
1 AACCCTA
4440 AACCCT-
1 AACCCTA
4446 AACCCTA
1 AACCCTA
4453 AACCCTA
1 AACCCTA
4460 AACCCTA
1 AACCCTA
4467 AACCCTA
1 AACCCTA
4474 AACCCTA
1 AACCCTA
4481 AACCCTA
1 AACCCTA
4488 AACCCTA
1 AACCCTA
4495 AACCCTA
1 AACCCTA
4502 AACCCTA
1 AACCCTA
4509 AACCCTA
1 AACCCTA
4516 AACCCTA
1 AACCCTA
4523 AACCCTA
1 AACCCTA
4530 AACCCTA
1 AACCCTA
4537 AACCCT-
1 AACCCTA
4543 AACCCTA
1 AACCCTA
4550 AACCCT-
1 AACCCTA
4556 AACCCTA
1 AACCCTA
4563 AACCCTA
1 AACCCTA
4570 AACCCTA
1 AACCCTA
4577 AACCCTA
1 AACCCTA
4584 AA-CCTA
1 AACCCTA
4590 AACCC-A
1 AACCCTA
4596 AACCCTA
1 AACCCTA
4603 AACCCTA
1 AACCCTA
4610 AACCCTA
1 AACCCTA
4617 AACCCTA
1 AACCCTA
4624 AACCCTA
1 AACCCTA
4631 AACCCTA
1 AACCCTA
4638 AACCCTA
1 AACCCTA
4645 AACCCT-
1 AACCCTA
4651 AACCCTA
1 AACCCTA
4658 AACCCTA
1 AACCCTA
4665 AACCCTA
1 AACCCTA
4672 AACCCTA
1 AACCCTA
4679 AA-CCTA
1 AACCCTA
4685 AA-CCTA
1 AACCCTA
4691 AACCCTA
1 AACCCTA
4698 AACCCTA
1 AACCCTA
4705 AACCCTA
1 AACCCTA
4712 AACCCT-
1 AACCCTA
4718 AACCCTA
1 AACCCTA
4725 AACCCTA
1 AACCCTA
4732 AACCCT-
1 AACCCTA
4738 AACCCT-
1 AACCCTA
4744 AACCCT-
1 AACCCTA
4750 AACCCTA
1 AACCCTA
4757 AACCCTA
1 AACCCTA
4764 AACCCTA
1 AACCCTA
4771 AACCCTA
1 AACCCTA
4778 AACCCTA
1 AACCCTA
4785 AACCCTA
1 AACCCTA
4792 AACCCTA
1 AACCCTA
4799 AACCCTA
1 AACCCTA
4806 AACCCTA
1 AACCCTA
4813 AA-CCTA
1 AACCCTA
4819 AACCCTA
1 AACCCTA
4826 AACCCTA
1 AACCCTA
4833 AACCCTA
1 AACCCTA
4840 AACCCT-
1 AACCCTA
4846 AACCCTA
1 AACCCTA
4853 AA-CC--
1 AACCCTA
4857 AACCCTA
1 AACCCTA
4864 AACCCTA
1 AACCCTA
4871 AACCCTA
1 AACCCTA
4878 AACCCTA
1 AACCCTA
4885 AACCCTA
1 AACCCTA
4892 AACCCTA
1 AACCCTA
4899 AACCCTA
1 AACCCTA
4906 AACCCTA
1 AACCCTA
4913 AACCCTA
1 AACCCTA
4920 AACCCTA
1 AACCCTA
4927 AACCCTA
1 AACCCTA
4934 AACCCTA
1 AACCCTA
4941 AACCCTA
1 AACCCTA
4948 AACCCTA
1 AACCCTA
4955 AACCCTA
1 AACCCTA
4962 AACCCTA
1 AACCCTA
4969 AACCCTA
1 AACCCTA
4976 AACCCTA
1 AACCCTA
4983 AACCCTA
1 AACCCTA
4990 AACCCTA
1 AACCCTA
4997 AACCCTA
1 AACCCTA
5004 AACCCT-
1 AACCCTA
5010 AACCCTA
1 AACCCTA
5017 AACCCTA
1 AACCCTA
5024 AACCCTA
1 AACCCTA
5031 AACCCTA
1 AACCCTA
5038 AA-CCTA
1 AACCCTA
5044 AACCCTA
1 AACCCTA
5051 AACCCTA
1 AACCCTA
5058 AACCCTA
1 AACCCTA
5065 AACCCTA
1 AACCCTA
5072 AACCC-A
1 AACCCTA
5078 AACCCTA
1 AACCCTA
5085 AACCCTA
1 AACCCTA
5092 AACCCTA
1 AACCCTA
5099 AACCC--
1 AACCCTA
5104 AACCCTA
1 AACCCTA
5111 AACCCTA
1 AACCCTA
5118 AACCCTA
1 AACCCTA
5125 AACCCTA
1 AACCCTA
5132 AACCCTA
1 AACCCTA
5139 AACCCTA
1 AACCCTA
5146 AACCCTA
1 AACCCTA
5153 AACCCTA
1 AACCCTA
5160 AACCCTA
1 AACCCTA
5167 AACCCTA
1 AACCCTA
5174 AACCCTA
1 AACCCTA
5181 AACCCTA
1 AACCCTA
5188 AACCCTA
1 AACCCTA
5195 AACCCTA
1 AACCCTA
5202 AACCCTA
1 AACCCTA
5209 AACCCTA
1 AACCCTA
5216 AACCCTA
1 AACCCTA
5223 AACCCTA
1 AACCCTA
5230 AACCCTA
1 AACCCTA
5237 AACCCT-
1 AACCCTA
5243 AACCCTA
1 AACCCTA
5250 AA-CCTA
1 AACCCTA
5256 AACCCTA
1 AACCCTA
5263 AACCCTA
1 AACCCTA
5270 AACCCTA
1 AACCCTA
5277 AACCCTA
1 AACCCTA
5284 AACCCTA
1 AACCCTA
5291 AACCCTA
1 AACCCTA
5298 AACCCTA
1 AACCCTA
5305 AACCCTA
1 AACCCTA
5312 AA-CCTA
1 AACCCTA
5318 AACCCTA
1 AACCCTA
5325 AACCCTA
1 AACCCTA
5332 AACCCTA
1 AACCCTA
5339 AACCCTA
1 AACCCTA
5346 AACCCT-
1 AACCCTA
5352 AACCCTA
1 AACCCTA
5359 AACCCTA
1 AACCCTA
5366 AA-CCTA
1 AACCCTA
5372 AACCCTA
1 AACCCTA
5379 AACCCTA
1 AACCCTA
5386 AACCCTA
1 AACCCTA
5393 AA-CCTA
1 AACCCTA
5399 AACCCTA
1 AACCCTA
5406 AACCCT-
1 AACCCTA
5412 AACCCTA
1 AACCCTA
5419 AACCCTA
1 AACCCTA
5426 AACCCTA
1 AACCCTA
5433 AACCCTA
1 AACCCTA
5440 AACCCTA
1 AACCCTA
5447 AACCCTA
1 AACCCTA
5454 AACCCTA
1 AACCCTA
5461 AACCCTA
1 AACCCTA
5468 AACCCT-
1 AACCCTA
5474 AACCCTA
1 AACCCTA
5481 AACCC-A
1 AACCCTA
5487 AACCCTA
1 AACCCTA
5494 AACCCTA
1 AACCCTA
5501 AACCCTA
1 AACCCTA
5508 AACCCTA
1 AACCCTA
5515 AA-CCTA
1 AACCCTA
5521 AACCCTA
1 AACCCTA
5528 AACCCT-
1 AACCCTA
5534 AACCCTA
1 AACCCTA
5541 AACCC-A
1 AACCCTA
5547 AACCCTA
1 AACCCTA
5554 AA-CCTA
1 AACCCTA
5560 AACCCTA
1 AACCCTA
5567 AACCCTA
1 AACCCTA
5574 AACCCTA
1 AACCCTA
5581 AA-CCTA
1 AACCCTA
5587 AACCCTA
1 AACCCTA
5594 AACCCTA
1 AACCCTA
5601 AACCCTA
1 AACCCTA
5608 AACCCTA
1 AACCCTA
5615 AACCCTA
1 AACCCTA
5622 AACCCTA
1 AACCCTA
5629 AACCCTA
1 AACCCTA
5636 AACCCTAAA
1 AACCCT--A
5645 AACCCTA
1 AACCCTA
5652 AACCCTA
1 AACCCTA
5659 AACCCTA
1 AACCCTA
5666 AACCCTA
1 AACCCTA
5673 AACCCTA
1 AACCCTA
5680 AACCCTA
1 AACCCTA
5687 AACCCTA
1 AACCCTA
5694 AACCCTA
1 AACCCTA
5701 AACCCTA
1 AACCCTA
5708 AACCCTA
1 AACCCTA
*
5715 AACCCAA
1 AACCCTA
5722 AACCCTA
1 AACCCTA
5729 AACCCTA
1 AACCCTA
5736 AACCCTA
1 AACCCTA
5743 AACCCTA
1 AACCCTA
5750 AACCCTA
1 AACCCTA
5757 AACCCTA
1 AACCCTA
5764 AACCCTA
1 AACCCTA
5771 AACCCTA
1 AACCCTA
5778 AACCCTA
1 AACCCTA
5785 AACCCT-
1 AACCCTA
5791 AACCCTA
1 AACCCTA
5798 AACCCTA
1 AACCCTA
5805 AACCCTA
1 AACCCTA
5812 AACCCTA
1 AACCCTA
5819 AACCCTA
1 AACCCTA
5826 AACCCTAA
1 AACCCT-A
5834 AACCCTA
1 AACCCTA
5841 AACCCTA
1 AACCCTA
5848 AACCCTA
1 AACCCTA
5855 AACCCTA
1 AACCCTA
5862 AACCCTA
1 AACCCTA
5869 AACCCT-
1 AACCCTA
5875 AACCCTAA
1 AACCCT-A
5883 AACCCTA
1 AACCCTA
5890 AA-CCT-
1 AACCCTA
5895 AACCCTA
1 AACCCTA
5902 AACCCTA
1 AACCCTA
5909 AACCCTA
1 AACCCTA
5916 AACCCTA
1 AACCCTA
5923 AACCCTA
1 AACCCTA
5930 AACCCTA
1 AACCCTA
5937 AACCCT-
1 AACCCTA
5943 AACCCTA
1 AACCCTA
5950 AACCCTA
1 AACCCTA
5957 AACCCTA
1 AACCCTA
5964 AACCCTA
1 AACCCTA
5971 AACCCTA
1 AACCCTA
5978 AACCCTA
1 AACCCTA
5985 AACCCTA
1 AACCCTA
5992 AACCCTA
1 AACCCTA
5999 AACCCTA
1 AACCCTA
6006 AACCCTA
1 AACCCTA
6013 AACCCTA
1 AACCCTA
6020 AACCCTA
1 AACCCTA
6027 AACCCTA
1 AACCCTA
6034 AACCCTA
1 AACCCTA
6041 AACCCTA
1 AACCCTA
6048 AACCCTA
1 AACCCTA
6055 AACCCTA
1 AACCCTA
6062 AACCCTA
1 AACCCTA
6069 AACCCTA
1 AACCCTA
6076 AACCCTA
1 AACCCTA
6083 AACCCTA
1 AACCCTA
6090 AACCCTA
1 AACCCTA
6097 AACCCTA
1 AACCCTA
6104 AACCCTA
1 AACCCTA
6111 AACCCTA
1 AACCCTA
6118 AACCCTA
1 AACCCTA
6125 AACCCTA
1 AACCCTA
6132 AACCCTA
1 AACCCTA
6139 AACCCTA
1 AACCCTA
6146 AACCCTA
1 AACCCTA
6153 AACCCTA
1 AACCCTA
6160 AACCCTA
1 AACCCTA
6167 AACCCTA
1 AACCCTA
6174 AACCCTA
1 AACCCTA
6181 AACCCTA
1 AACCCTA
6188 AACCCTAA
1 AACCCT-A
6196 AACCCT-
1 AACCCTA
6202 AACCCTA
1 AACCCTA
6209 AACCCTA
1 AACCCTA
6216 AACCCTA
1 AACCCTA
6223 AACCCTA
1 AACCCTA
6230 AACCCTA
1 AACCCTA
6237 AACCCTA
1 AACCCTA
6244 AACCCT-
1 AACCCTA
6250 AACCCTA
1 AACCCTA
6257 AACCCTA
1 AACCCTA
6264 AACCCTA
1 AACCCTA
6271 AACCCT-
1 AACCCTA
6277 AACCCTA
1 AACCCTA
6284 AACCCTA
1 AACCCTA
6291 AACCCTA
1 AACCCTA
6298 AACCCTA
1 AACCCTA
6305 AACCCTA
1 AACCCTA
6312 AACCCTA
1 AACCCTA
6319 AA-CCT-
1 AACCCTA
6324 AACCCTA
1 AACCCTA
6331 AACCCTA
1 AACCCTA
6338 AACCCT-
1 AACCCTA
6344 AA-CCTA
1 AACCCTA
6350 AACCCTA
1 AACCCTA
6357 AACCCTA
1 AACCCTA
6364 AACCCTA
1 AACCCTA
6371 AACCCTA
1 AACCCTA
6378 AACCCTA
1 AACCCTA
6385 AACCCTA
1 AACCCTA
6392 AACCCTA
1 AACCCTA
6399 AACCCTA
1 AACCCTA
6406 AACCCTA
1 AACCCTA
6413 AACCCT-
1 AACCCTA
6419 AACCCTA
1 AACCCTA
6426 AA-CCTA
1 AACCCTA
6432 AACCCCCTA
1 AA--CCCTA
6441 AACCCTA
1 AACCCTA
6448 AACCCTA
1 AACCCTA
6455 AACCCTA
1 AACCCTA
6462 AACCCTA
1 AACCCTA
6469 AACCCTA
1 AACCCTA
6476 AACCCTA
1 AACCCTA
6483 AACCCTA
1 AACCCTA
6490 AACCCTA
1 AACCCTA
6497 AACCCTA
1 AACCCTA
6504 AACCCTA
1 AACCCTA
6511 AACCCTA
1 AACCCTA
*
6518 AACCCGA
1 AACCCTA
6525 AACCCTA
1 AACCCTA
6532 AACCCTA
1 AACCCTA
6539 AACCCTA
1 AACCCTA
6546 AACCCTA
1 AACCCTA
6553 AACCCTA
1 AACCCTA
6560 AACCCTA
1 AACCCTA
6567 AACCCTA
1 AACCCTA
6574 AACCC--
1 AACCCTA
6579 AACCCTA
1 AACCCTA
6586 AACCCTA
1 AACCCTA
6593 AACCCTA
1 AACCCTA
6600 AACCCTA
1 AACCCTA
6607 AACCCTA
1 AACCCTA
6614 AACCCTA
1 AACCCTA
6621 AACCCTA
1 AACCCTA
6628 AACCCTA
1 AACCCTA
6635 AACCCTA
1 AACCCTA
6642 AACCCTA
1 AACCCTA
6649 AACCCTA
1 AACCCTA
6656 AACCCTA
1 AACCCTA
6663 AACCCT-
1 AACCCTA
6669 AACCCTA
1 AACCCTA
6676 AACCCTA
1 AACCCTA
6683 AACCCTA
1 AACCCTA
6690 AACCCTA
1 AACCCTA
6697 AACCCTA
1 AACCCTA
6704 AACCCTA
1 AACCCTA
6711 AACCCCCTA
1 AA--CCCTA
6720 AA-CCTA
1 AACCCTA
6726 AACCCTA
1 AACCCTA
6733 AACCCTA
1 AACCCTA
6740 AACCCTA
1 AACCCTA
6747 AACCCTA
1 AACCCTA
6754 AACCCTA
1 AACCCTA
6761 AACCCTA
1 AACCCTA
6768 AACCCTA
1 AACCCTA
6775 AACCCTA
1 AACCCTA
6782 AACCC-A
1 AACCCTA
6788 AACCCT-
1 AACCCTA
6794 AACCCTA
1 AACCCTA
6801 AACCCTA
1 AACCCTA
6808 AA-CCTA
1 AACCCTA
6814 AACCCTA
1 AACCCTA
6821 AACCCTA
1 AACCCTA
6828 AACCCTA
1 AACCCTA
6835 AACCCTA
1 AACCCTA
6842 AACCCTA
1 AACCCTA
6849 AACCCTA
1 AACCCTA
6856 AACCCTA
1 AACCCTA
6863 AACCCTA
1 AACCCTA
6870 AACCCTA
1 AACCCTA
6877 AACCCTA
1 AACCCTA
6884 AACCCTA
1 AACCCTA
6891 AACCCTA
1 AACCCTA
6898 AACCCT-
1 AACCCTA
6904 AACCCTA
1 AACCCTA
6911 AACCCTA
1 AACCCTA
6918 AACCCTA
1 AACCCTA
*
6925 AACCC-G
1 AACCCTA
6931 AACCCTA
1 AACCCTA
6938 AACCCTA
1 AACCCTA
6945 AACCCTA
1 AACCCTA
6952 AACCCTA
1 AACCCTA
6959 AACCC-A
1 AACCCTA
6965 AACCCT-
1 AACCCTA
6971 AACCCTA
1 AACCCTA
6978 AACCCTA
1 AACCCTA
6985 AACCCTA
1 AACCCTA
6992 AACCCTA
1 AACCCTA
6999 AACCCTA
1 AACCCTA
7006 AACCCTA
1 AACCCTA
7013 AACCCTA
1 AACCCTA
7020 AACCCTAA
1 AACCCT-A
7028 AACCCTA
1 AACCCTA
7035 AACCCT-
1 AACCCTA
7041 AACCCTA
1 AACCCTA
7048 AACCCTA
1 AACCCTA
7055 AACCCTA
1 AACCCTA
7062 AACCCTA
1 AACCCTA
7069 AACCCTA
1 AACCCTA
7076 AACCCTA
1 AACCCTA
7083 AACCCTA
1 AACCCTA
7090 AACCCTA
1 AACCCTA
7097 AACCCTA
1 AACCCTA
7104 AACCCTA
1 AACCCTA
7111 AACCCTA
1 AACCCTA
7118 AACCCTA
1 AACCCTA
7125 AACCCT-
1 AACCCTA
7131 AACCCTA
1 AACCCTA
7138 AACCCCTA
1 AA-CCCTA
7146 AACCCTCTA
1 AA-CC-CTA
7155 AACCCT-
1 AACCCTA
7161 AACCCTA
1 AACCCTA
7168 AACCCTA
1 AACCCTA
7175 AACCCTA
1 AACCCTA
7182 AACCCTA
1 AACCCTA
7189 AACCCTA
1 AACCCTA
7196 AA-CCTA
1 AACCCTA
7202 AA-CCTA
1 AACCCTA
7208 AACCCTA
1 AACCCTA
7215 AACCCTA
1 AACCCTA
7222 AACCCT-
1 AACCCTA
7228 AACCCTA
1 AACCCTA
7235 AACCCTA
1 AACCCTA
7242 AACCCTA
1 AACCCTA
7249 AACCCT-
1 AACCCTA
7255 AACCCTA
1 AACCCTA
7262 AA-CCTA
1 AACCCTA
7268 AACCCTA
1 AACCCTA
7275 AACCCTA
1 AACCCTA
7282 AACCCTA
1 AACCCTA
7289 AACCCTA
1 AACCCTA
7296 AACCCTA
1 AACCCTA
7303 AACCCTA
1 AACCCTA
7310 AACCCTA
1 AACCCTA
7317 AACCCTA
1 AACCCTA
7324 AACCCTA
1 AACCCTA
7331 AACCCTA
1 AACCCTA
7338 AACCCTA
1 AACCCTA
7345 AACCCTA
1 AACCCTA
7352 AACCCTA
1 AACCCTA
7359 AACCCTA
1 AACCCTA
7366 AACCCTA
1 AACCCTA
7373 AACCCTA
1 AACCCTA
7380 AACCCT-
1 AACCCTA
7386 AACCCT-
1 AACCCTA
7392 AACCCTA
1 AACCCTA
7399 AACCCTA
1 AACCCTA
7406 AACCCTA
1 AACCCTA
7413 AACCCT-
1 AACCCTA
7419 AACCCTA
1 AACCCTA
7426 AACCCTA
1 AACCCTA
7433 AACCCTA
1 AACCCTA
7440 AA-CCT-
1 AACCCTA
7445 AACCCTA
1 AACCCTA
7452 AACCCTA
1 AACCCTA
7459 AACCCTA
1 AACCCTA
7466 AACCCTA
1 AACCCTA
7473 AACCCTA
1 AACCCTA
7480 AACCCTA
1 AACCCTA
7487 AACCCTA
1 AACCCTA
7494 AACCCTA
1 AACCCTA
7501 AACCCTA
1 AACCCTA
7508 AACCCTA
1 AACCCTA
7515 AACCCTA
1 AACCCTA
7522 AACCCTA
1 AACCCTA
7529 AACCCTA
1 AACCCTA
7536 AACCCTA
1 AACCCTA
7543 AACCCTA
1 AACCCTA
7550 AACCCTA
1 AACCCTA
7557 AACCCTA
1 AACCCTA
7564 AACCCTA
1 AACCCTA
7571 AACCCTA
1 AACCCTA
7578 AACCCTA
1 AACCCTA
7585 AACCCTA
1 AACCCTA
7592 AACCCTA
1 AACCCTA
7599 AACCCTA
1 AACCCTA
7606 AACCCTA
1 AACCCTA
7613 AACCCTA
1 AACCCTA
7620 AACCCTA
1 AACCCTA
7627 AACCCTA
1 AACCCTA
7634 AACCCTA
1 AACCCTA
7641 AACCCTA
1 AACCCTA
7648 AACCCTA
1 AACCCTA
7655 AACCCTA
1 AACCCTA
7662 AA-CCTA
1 AACCCTA
7668 AACCCTA
1 AACCCTA
7675 AACCCTA
1 AACCCTA
7682 AACCCTA
1 AACCCTA
7689 AACCCTA
1 AACCCTA
7696 AACCCTA
1 AACCCTA
7703 AACCCTA
1 AACCCTA
7710 AACCCTA
1 AACCCTA
*
7717 AACCCGA
1 AACCCTA
7724 AACCCTA
1 AACCCTA
7731 AACCCTA
1 AACCCTA
7738 AACCCTA
1 AACCCTA
7745 AACCCTA
1 AACCCTA
7752 AACCCTA
1 AACCCTA
7759 AACCCTA
1 AACCCTA
7766 AACCCTA
1 AACCCTA
7773 AACCCTA
1 AACCCTA
7780 AACCCTA
1 AACCCTA
7787 AACCCTA
1 AACCCTA
7794 AACCCT-
1 AACCCTA
7800 -ACCCTA
1 AACCCTA
7806 AACCCTA
1 AACCCTA
7813 AACCCTA
1 AACCCTA
7820 AACCCTA
1 AACCCTA
7827 AACCCTA
1 AACCCTA
7834 AACCCTA
1 AACCCTA
7841 AACCCTA
1 AACCCTA
7848 AACCCTA
1 AACCCTA
7855 AACCCTA
1 AACCCTA
7862 AACCCTA
1 AACCCTA
7869 AACCCT-
1 AACCCTA
7875 AACCCTA
1 AACCCTA
7882 AA-CCTA
1 AACCCTA
7888 AACCCTA
1 AACCCTA
7895 AACCCTA
1 AACCCTA
7902 AACCCTA
1 AACCCTA
7909 AACCCTA
1 AACCCTA
7916 AACCCTA
1 AACCCTA
7923 AACCCTA
1 AACCCTA
7930 AACCCTA
1 AACCCTA
7937 AACCCTA
1 AACCCTA
7944 AACCCTA
1 AACCCTA
7951 AACCCTA
1 AACCCTA
7958 AA-CC-A
1 AACCCTA
7963 AACCCTA
1 AACCCTA
7970 AACCCTA
1 AACCCTA
7977 AACCCTA
1 AACCCTA
7984 AACCCTA
1 AACCCTA
7991 AACCCTA
1 AACCCTA
7998 AACCC-A
1 AACCCTA
8004 AACCC
1 AACCC
8009 CGGACCCCGA
Statistics
Matches: 7763, Mismatches: 38, Indels: 402
0.95 0.00 0.05
Matches are distributed among these distances:
4 4 0.00
5 78 0.01
6 933 0.12
7 6635 0.85
8 75 0.01
9 38 0.00
ACGTcount: A:0.43, C:0.43, G:0.00, T:0.14
Consensus pattern (7 bp):
AACCCTA
Found at i:8030 original size:7 final size:7
Alignment explanation
Indices: 8013--8117 Score: 189
Period size: 7 Copynumber: 15.4 Consensus size: 7
8003 AAACCCCGGA
8013 CCCCGAG
1 CCCCGAG
8020 -CCCGAG
1 CCCCGAG
8026 CCCCGAG
1 CCCCGAG
8033 -CCCGAG
1 CCCCGAG
8039 CCCCGAG
1 CCCCGAG
8046 CCCCGAG
1 CCCCGAG
8053 CCCCGAG
1 CCCCGAG
8060 CCCCGAG
1 CCCCGAG
8067 CCCCGAG
1 CCCCGAG
8074 CCCCGAG
1 CCCCGAG
8081 -CCCGAG
1 CCCCGAG
8087 CCCCGAG
1 CCCCGAG
8094 CCCCGAG
1 CCCCGAG
8101 CCCCGAG
1 CCCCGAG
8108 CCCCGAG
1 CCCCGAG
8115 CCC
1 CCC
8118 GGACCCCGGA
Statistics
Matches: 95, Mismatches: 0, Indels: 6
0.94 0.00 0.06
Matches are distributed among these distances:
6 18 0.19
7 77 0.81
ACGTcount: A:0.14, C:0.57, G:0.29, T:0.00
Consensus pattern (7 bp):
CCCCGAG
Found at i:8063 original size:34 final size:35
Alignment explanation
Indices: 8013--8125 Score: 189
Period size: 34 Copynumber: 3.3 Consensus size: 35
8003 AAACCCCGGA
8013 CCCCGAG-CCCGAGCCCCGAG-CCCGAGCCCCGAG
1 CCCCGAGCCCCGAGCCCCGAGCCCCGAGCCCCGAG
8046 CCCCGAGCCCCGAGCCCCGAGCCCCGAGCCCCGAG
1 CCCCGAGCCCCGAGCCCCGAGCCCCGAGCCCCGAG
8081 -CCCGAGCCCCGAGCCCCGAGCCCCGAGCCCCGAG
1 CCCCGAGCCCCGAGCCCCGAGCCCCGAGCCCCGAG
*
8115 CCCGGA-CCCCG
1 CCCCGAGCCCCG
8126 GACCCTAAAC
Statistics
Matches: 76, Mismatches: 1, Indels: 5
0.93 0.01 0.06
Matches are distributed among these distances:
33 7 0.09
34 52 0.68
35 17 0.22
ACGTcount: A:0.14, C:0.57, G:0.29, T:0.00
Consensus pattern (35 bp):
CCCCGAGCCCCGAGCCCCGAGCCCCGAGCCCCGAG
Found at i:8144 original size:14 final size:14
Alignment explanation
Indices: 8127--8176 Score: 55
Period size: 14 Copynumber: 3.6 Consensus size: 14
8117 CGGACCCCGG
*
8127 ACCCTAAACCCTAA
1 ACCCTAAGCCCTAA
* *
8141 ACCCTAGGCCCTAG
1 ACCCTAAGCCCTAA
* *
8155 GCCCTAGGCCCTAA
1 ACCCTAAGCCCTAA
8169 ACCCTAAG
1 ACCCTAAG
8177 AATATAGAAT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.30, C:0.42, G:0.14, T:0.14
Consensus pattern (14 bp):
ACCCTAAGCCCTAA
Found at i:8479 original size:32 final size:34
Alignment explanation
Indices: 8434--8511 Score: 115
Period size: 34 Copynumber: 2.3 Consensus size: 34
8424 CTACATGGCA
*
8434 CATGCACCTCCCCAACATCCC-A-ACACAGGTCGC
1 CATGCA-CTCCCCAACACCCCAACACACAGGTCGC
*
8467 CATGCATTCCCCAACACCCCAACACACAGGTCGC
1 CATGCACTCCCCAACACCCCAACACACAGGTCGC
8501 CATGCACTCCC
1 CATGCACTCCC
8512 AGCGACCTAC
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
32 12 0.30
33 7 0.17
34 21 0.52
ACGTcount: A:0.27, C:0.49, G:0.12, T:0.13
Consensus pattern (34 bp):
CATGCACTCCCCAACACCCCAACACACAGGTCGC
Found at i:8536 original size:29 final size:29
Alignment explanation
Indices: 8494--8605 Score: 161
Period size: 29 Copynumber: 3.9 Consensus size: 29
8484 CCCAACACAC
8494 AGGTCGCCATGCACTCCCAGCGACCTACA
1 AGGTCGCCATGCACTCCCAGCGACCTACA
*
8523 AGGTCGCTATGCACTCCCAGCGACCTACA
1 AGGTCGCCATGCACTCCCAGCGACCTACA
***
8552 AGGTCGCCATGCACTCCCAGCGACCTTGT
1 AGGTCGCCATGCACTCCCAGCGACCTACA
* * *
8581 AGGTCGCCAAGCAGTCCCGGCGACC
1 AGGTCGCCATGCACTCCCAGCGACC
8606 AAGCTTTCCT
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 75 1.00
ACGTcount: A:0.21, C:0.39, G:0.24, T:0.15
Consensus pattern (29 bp):
AGGTCGCCATGCACTCCCAGCGACCTACA
Found at i:8914 original size:29 final size:28
Alignment explanation
Indices: 8851--8916 Score: 100
Period size: 26 Copynumber: 2.4 Consensus size: 28
8841 GAGAACATAA
*
8851 GAGAAAGAAAGGGAGAAGAGATTGCAGC
1 GAGAAAGAAAGGGAGAAGAAATTGCAGC
8879 -AG-AAGAAAGGGAGAAGAAATTGCAGCC
1 GAGAAAGAAAGGGAGAAGAAATTGCAG-C
8906 GAGAAAGAAAG
1 GAGAAAGAAAG
8917 AAAGGGAGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
26 22 0.65
27 3 0.09
28 2 0.06
29 7 0.21
ACGTcount: A:0.50, C:0.08, G:0.36, T:0.06
Consensus pattern (28 bp):
GAGAAAGAAAGGGAGAAGAAATTGCAGC
Found at i:9087 original size:22 final size:21
Alignment explanation
Indices: 9062--9102 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
9052 GTTAATTAGT
*
9062 TTGTTAATTTAGGGTTATATGA
1 TTGTTAATTTA-AGTTATATGA
*
9084 TTGTTAGTTTAAGTTATAT
1 TTGTTAATTTAAGTTATAT
9103 TATACATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.27, C:0.00, G:0.20, T:0.54
Consensus pattern (21 bp):
TTGTTAATTTAAGTTATATGA
Found at i:9321 original size:32 final size:30
Alignment explanation
Indices: 9285--9358 Score: 87
Period size: 30 Copynumber: 2.4 Consensus size: 30
9275 TTAGTTAGTA
*
9285 AGTTTATTAGTAGTATA-TTATAATGAAAAAAT
1 AGTTTATTAGT--TATAGTTAT-ATAAAAAAAT
*
9317 AGTTTATTAGTTTTAGTTATATAAAAAAAT
1 AGTTTATTAGTTATAGTTATATAAAAAAAT
*
9347 ATTTTATTAGTT
1 AGTTTATTAGTT
9359 GTTTAAGGGT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
30 23 0.61
31 4 0.11
32 11 0.29
ACGTcount: A:0.42, C:0.00, G:0.11, T:0.47
Consensus pattern (30 bp):
AGTTTATTAGTTATAGTTATATAAAAAAAT
Found at i:9435 original size:16 final size:16
Alignment explanation
Indices: 9403--9449 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
9393 TTTAAAAAGT
*
9403 TTAGTTTGTTAGT-TTA
1 TTAGTTTATTA-TATTA
9419 TTAGTTTATTATATTA
1 TTAGTTTATTATATTA
*
9435 TAAG-TTATTATATTA
1 TTAGTTTATTATATTA
9450 AAGTTTAGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 12 0.43
16 16 0.57
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.60
Consensus pattern (16 bp):
TTAGTTTATTATATTA
Found at i:9444 original size:15 final size:14
Alignment explanation
Indices: 9424--9454 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
9414 GTTTATTAGT
9424 TTATTATATTATAAG
1 TTATTATATTA-AAG
9439 TTATTATATTAAAG
1 TTATTATATTAAAG
9453 TT
1 TT
9455 TAGTGTTGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (14 bp):
TTATTATATTAAAG
Found at i:11686 original size:14 final size:14
Alignment explanation
Indices: 11667--11714 Score: 66
Period size: 14 Copynumber: 3.6 Consensus size: 14
11657 TTCAAGTCGT
11667 AAATCATTACTATC
1 AAATCATTACTATC
11681 AAATCATTAC--T-
1 AAATCATTACTATC
*
11692 AAATCATTAATATC
1 AAATCATTACTATC
11706 AAATCATTA
1 AAATCATTA
11715 AATATTAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
11 9 0.30
12 1 0.03
13 1 0.03
14 19 0.63
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.35
Consensus pattern (14 bp):
AAATCATTACTATC
Found at i:11694 original size:25 final size:25
Alignment explanation
Indices: 11666--11714 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
11656 GTTCAAGTCG
*
11666 TAAATCATTACTATCAAATCATTAC
1 TAAATCATTAATATCAAATCATTAC
11691 TAAATCATTAATATCAAATCATTA
1 TAAATCATTAATATCAAATCATTA
11715 AATATTAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.37
Consensus pattern (25 bp):
TAAATCATTAATATCAAATCATTAC
Found at i:11820 original size:120 final size:120
Alignment explanation
Indices: 11682--12392 Score: 832
Period size: 120 Copynumber: 6.2 Consensus size: 120
11672 ATTACTATCA
11682 AATCATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCA
1 AATCATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCA
* *
11747 TTACTAAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACT
66 TTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACT
11802 AATCATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCA
1 AATCATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCA
* *
11867 TTACTAAATCATTACTATCAAATCATTAAATATTAATAACAATTTCATTATTACT
66 TTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACT
11922 AATCATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCA
1 AATCATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCA
* * * * * * *
11987 TTACTAAATCATTATTAT-AATTTCATTACTAGTTATGTAACGAA-AA-TACGGTTAATTGAACC
66 TTACTAAATCATTAATATCAA-ATCATTA--A-ATAT-TAA-TAATAATTTC-ATT-ATT--ACT
* * * * * * *
12049 AAACATT-GT---TCATT-GT-TCAAGTC-GT-AA-A-TCAT--T-A---C--TA-T-CAAATCA
1 AATCATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCA
*
12094 TTACT-AATCATTAATATC-AATCATTAAATATTAATAATAAATT-ATTATTACT
66 TTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACT
* * *
12146 AATCATTAGT-AATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCA
1 AATCATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCA
12210 TTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACT
66 TTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACT
* *
12265 AATCA-T--T--A-C-----TATCAAATCATTAAATATTAATAACAATTTCATTATTACTAATTA
1 AATCATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCA
* *
12319 TTACTAAATCATTATTATTAAATCATTAAATATTAATAATAATTTCATTATTACT
66 TTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACT
12374 AATCATTACTAAATCATTA
1 AATCATTACTAAATCATTA
12393 TTATAATTTC
Statistics
Matches: 511, Mismatches: 35, Indels: 91
0.80 0.05 0.14
Matches are distributed among these distances:
97 8 0.02
98 2 0.00
99 3 0.01
100 9 0.02
101 6 0.01
102 10 0.02
103 2 0.00
104 2 0.00
105 7 0.01
106 15 0.03
107 11 0.02
108 2 0.00
109 103 0.20
110 1 0.00
111 1 0.00
112 2 0.00
114 5 0.01
115 4 0.01
116 12 0.02
117 16 0.03
118 26 0.05
119 18 0.04
120 207 0.41
121 6 0.01
122 2 0.00
123 10 0.02
124 7 0.01
125 5 0.01
126 1 0.00
127 8 0.02
ACGTcount: A:0.45, C:0.13, G:0.02, T:0.41
Consensus pattern (120 bp):
AATCATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCA
TTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACT
Found at i:12014 original size:60 final size:60
Alignment explanation
Indices: 11682--12000 Score: 602
Period size: 60 Copynumber: 5.3 Consensus size: 60
11672 ATTACTATCA
11682 AATCATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACT
1 AATCATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACT
* *
11742 AATCATTACTAAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACT
1 AATCATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACT
11802 AATCATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACT
1 AATCATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACT
* *
11862 AATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAACAATTTCATTATTACT
1 AATCATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACT
11922 AATCATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACT
1 AATCATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACT
11982 AATCATTACTAAATCATTA
1 AATCATTACTAAATCATTA
12001 TTATAATTTC
Statistics
Matches: 251, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 251 1.00
ACGTcount: A:0.46, C:0.13, G:0.00, T:0.41
Consensus pattern (60 bp):
AATCATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACT
Found at i:12102 original size:24 final size:23
Alignment explanation
Indices: 12075--12119 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
12065 TCAAGTCGTA
*
12075 AATCATTACTATCAAATCATTACT
1 AATCATTAATATC-AATCATTACT
12099 AATCATTAATATCAATCATTA
1 AATCATTAATATCAATCATTA
12120 AATATTAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.44, C:0.18, G:0.00, T:0.38
Consensus pattern (23 bp):
AATCATTAATATCAATCATTACT
Found at i:12237 original size:60 final size:59
Alignment explanation
Indices: 12089--12720 Score: 546
Period size: 60 Copynumber: 11.2 Consensus size: 59
12079 ATTACTATCA
*
12089 AATCATTACTAATCATTAATATC-AATCATTAAATATTAATAATAAATT-ATTATTACT
1 AATCATTACTAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACT
* * *
12146 AATCATTAGTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACT
1 AATCATTACTAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACT
12205 AATCATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACT
1 AATCATTACT-AATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACT
*
12265 AATCA-T--T-A-C-----TATCAAATCATTAAATATTAATAACAATTTCATTATTACT
1 AATCATTACTAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACT
* * *
12314 AATTATTACTAAATCATTATTATTAAATCATTAAATATTAATAATAATTTCATTATTACT
1 AATCATTACT-AATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACT
* * * * * **
12374 AATCATTACTAAATCATTATTAT-AATTTCATTACTAGTTATGTAACGAA-AATATGGTTAATTG
1 AATCATTACT-AATCATTAATATCAA-ATCATTA--A-ATAT-TAA-TAATAATTTCATT-ATT-
*
12437 AACC
57 -ACT
* * * * * * *
12441 AAACATT-GT--TCATT-GT-TCAAGT--TGTAAATCATTACT-ATCAA-ATCATTACTA--
1 AATCATTACTAATCATTAATATCAAATCAT-TAAAT-ATTAATAAT-AATTTCATTATTACT
*
12492 AATCA-T---------TAATATCAAATCATTAAATATTAATAATAAATT-ATTATTACT
1 AATCATTACTAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACT
*
12540 AATCA-T--T-A-C-----TATCAAATCATTAAAAATTAATAATAATTTCATTATTACT
1 AATCATTACTAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACT
12589 AATCATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACT
1 AATCATTACT-AATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACT
* *
12649 AATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATCATTACT
1 AATCATTACT-AATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACT
12709 AATCATTACTAA
1 AATCATTACTAA
12721 ATCTTATAAA
Statistics
Matches: 484, Mismatches: 40, Indels: 100
0.78 0.06 0.16
Matches are distributed among these distances:
44 1 0.00
45 1 0.00
46 18 0.04
47 8 0.02
48 35 0.07
49 57 0.12
50 3 0.01
51 4 0.01
52 2 0.00
53 1 0.00
54 3 0.01
55 6 0.01
56 4 0.01
57 27 0.06
58 26 0.05
59 24 0.05
60 227 0.47
61 2 0.00
62 4 0.01
63 8 0.02
64 9 0.02
65 5 0.01
66 1 0.00
67 8 0.02
ACGTcount: A:0.45, C:0.12, G:0.02, T:0.41
Consensus pattern (59 bp):
AATCATTACTAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACT
Found at i:12246 original size:21 final size:22
Alignment explanation
Indices: 12214--12296 Score: 64
Period size: 21 Copynumber: 3.6 Consensus size: 22
12204 TAATCATTAC
12214 TAAATCATTAATATCAAATCAT
1 TAAATCATTAATATCAAATCAT
*
12236 TAAAT-ATTAATAAT-AATTTCATTAT
1 TAAATCATTAAT-ATCAA----ATCAT
*
12261 TACTAATCATTACTATCAAATCAT
1 TA--AATCATTAATATCAAATCAT
12285 TAAAT-ATTAATA
1 TAAATCATTAATA
12297 ACAATTTCAT
Statistics
Matches: 48, Mismatches: 4, Indels: 19
0.68 0.06 0.27
Matches are distributed among these distances:
21 14 0.29
22 10 0.21
24 6 0.12
25 6 0.12
27 5 0.10
28 7 0.15
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (22 bp):
TAAATCATTAATATCAAATCAT
Found at i:12322 original size:49 final size:49
Alignment explanation
Indices: 12209--12324 Score: 196
Period size: 49 Copynumber: 2.3 Consensus size: 49
12199 ATTACTAATC
* *
12209 ATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATT
1 ATTACT-AATCATTACTATCAAATCATTAAATATTAATAACAATTTCATT
12259 ATTACTAATCATTACTATCAAATCATTAAATATTAATAACAATTTCATT
1 ATTACTAATCATTACTATCAAATCATTAAATATTAATAACAATTTCATT
*
12308 ATTACTAATTATTACTA
1 ATTACTAATCATTACTA
12325 AATCATTATT
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
49 57 0.90
50 6 0.10
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.42
Consensus pattern (49 bp):
ATTACTAATCATTACTATCAAATCATTAAATATTAATAACAATTTCATT
Found at i:12334 original size:14 final size:14
Alignment explanation
Indices: 12315--12346 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
12305 ATTATTACTA
12315 ATTATTACTAAATC
1 ATTATTACTAAATC
*
12329 ATTATTATTAAATC
1 ATTATTACTAAATC
12343 ATTA
1 ATTA
12347 AATATTAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (14 bp):
ATTATTACTAAATC
Found at i:12405 original size:392 final size:398
Alignment explanation
Indices: 11585--12727 Score: 1951
Period size: 392 Copynumber: 2.9 Consensus size: 398
11575 TTTTAGTATC
11585 AAATCATTATTATAATTTCATTACTAGTTATGTAACGAAAATATGGTTAATTGAACCAAACATTG
1 AAATCATTATTATAATTTCATTACTAGTTATGTAACGAAAATATGGTTAATTGAACCAAACATTG
11650 TTCATTGTTCAAGTCGTAAATCATTACTATCAAATCATTACTAAATCATTAATATCAAATCATTA
66 TTCATTGTTCAAGTCGTAAATCATTACTATCAAATCATTACTAAATCATTAATATCAAATCATTA
*
11715 AATATTAATAATAATTTCATTATTACTAATCATTACTAAATCATTACTATCAAATCATTAAAAAT
131 AATATTAATAATAAATT-ATTATTACTAATCATTA-T-AATCATTACTATCAAATCATTAAAAAT
11780 TAATAATAATTTCATTATTACTAATCATTACTAAATCATTAATATCAAATCATTAAATATTAATA
193 TAATAATAATTTCATTATTACTAATCATTACTAAATCATTAATATCAAATCATTAAATATTAATA
11845 ATAATTTCATTATTACTAATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAACAAT
258 ATAATTTC-----TACT-ATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAACAAT
*
11910 TTCATTATTACTAATCATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCAT
317 TTCATTATTACTAATCATTACTAAATCATTATTATCAAATCATTAAATATTAATAATAATTTCAT
11975 TATTACTAATCATTACT
382 TATTACTAATCATTACT
*
11992 AAATCATTATTATAATTTCATTACTAGTTATGTAACGAAAATACGGTTAATTGAACCAAACATTG
1 AAATCATTATTATAATTTCATTACTAGTTATGTAACGAAAATATGGTTAATTGAACCAAACATTG
12057 TTCATTGTTCAAGTCGTAAATCATTACTATCAAATCATTACT-AATCATTAATATC-AATCATTA
66 TTCATTGTTCAAGTCGTAAATCATTACTATCAAATCATTACTAAATCATTAATATCAAATCATTA
12120 AATATTAATAATAAATTATTATTACTAATCATTAGTAATCATTACTATCAAATCATTAAAAATTA
131 AATATTAATAATAAATTATTATTACTAATCATTA-TAATCATTACTATCAAATCATTAAAAATTA
12185 ATAATAATTTCATTATTACTAATCATTACTAAATCATTAATATCAAATCATTAAATATTAATAAT
195 ATAATAATTTCATTATTACTAATCATTACTAAATCATTAATATCAAATCATTAAATATTAATAAT
12250 AATTTC-A-T-T-ATTACT-AATCATTACTATCAAATCATTAAATATTAATAACAATTTCATTAT
260 AATTTCTACTATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAACAATTTCATTAT
* *
12310 TACTAATTATTACTAAATCATTATTATTAAATCATTAAATATTAATAATAATTTCATTATTACTA
325 TACTAATCATTACTAAATCATTATTATCAAATCATTAAATATTAATAATAATTTCATTATTACTA
12375 ATCATTACT
390 ATCATTACT
12384 AAATCATTATTATAATTTCATTACTAGTTATGTAACGAAAATATGGTTAATTGAACCAAACATTG
1 AAATCATTATTATAATTTCATTACTAGTTATGTAACGAAAATATGGTTAATTGAACCAAACATTG
*
12449 TTCATTGTTCAAGTTGTAAATCATTACTATCAAATCATTACTAAATCATTAATATCAAATCATTA
66 TTCATTGTTCAAGTCGTAAATCATTACTATCAAATCATTACTAAATCATTAATATCAAATCATTA
12514 AATATTAATAATAAATTATTA-T--T-A-C----TAATCATTACTATCAAATCATTAAAAATTAA
131 AATATTAATAATAAATTATTATTACTAATCATTATAATCATTACTATCAAATCATTAAAAATTAA
12570 TAATAATTTCATTATTACTAATCATTACTAAATCATTAATATCAAATCATTAAATATTAATAATA
196 TAATAATTTCATTATTACTAATCATTACTAAATCATTAATATCAAATCATTAAATATTAATAATA
*
12635 ATTTCATTATTACTAATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAATAATTTC
261 ATTTC-----TACT-ATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAACAATTTC
*
12700 ATCATTACTAATCATTACTAAATC-TTAT
320 ATTATTACTAATCATTACTAAATCATTAT
12728 AAATACATAG
Statistics
Matches: 712, Mismatches: 11, Indels: 39
0.93 0.01 0.05
Matches are distributed among these distances:
384 101 0.14
389 1 0.00
390 2 0.00
391 2 0.00
392 221 0.31
393 21 0.03
394 40 0.06
395 61 0.09
396 1 0.00
397 1 0.00
403 100 0.14
404 18 0.03
405 24 0.03
406 13 0.02
407 106 0.15
ACGTcount: A:0.44, C:0.13, G:0.03, T:0.41
Consensus pattern (398 bp):
AAATCATTATTATAATTTCATTACTAGTTATGTAACGAAAATATGGTTAATTGAACCAAACATTG
TTCATTGTTCAAGTCGTAAATCATTACTATCAAATCATTACTAAATCATTAATATCAAATCATTA
AATATTAATAATAAATTATTATTACTAATCATTATAATCATTACTATCAAATCATTAAAAATTAA
TAATAATTTCATTATTACTAATCATTACTAAATCATTAATATCAAATCATTAAATATTAATAATA
ATTTCTACTATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAACAATTTCATTATT
ACTAATCATTACTAAATCATTATTATCAAATCATTAAATATTAATAATAATTTCATTATTACTAA
TCATTACT
Found at i:12485 original size:14 final size:14
Alignment explanation
Indices: 12466--12513 Score: 66
Period size: 14 Copynumber: 3.6 Consensus size: 14
12456 TTCAAGTTGT
12466 AAATCATTACTATC
1 AAATCATTACTATC
12480 AAATCATTAC--T-
1 AAATCATTACTATC
*
12491 AAATCATTAATATC
1 AAATCATTACTATC
12505 AAATCATTA
1 AAATCATTA
12514 AATATTAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
11 9 0.30
12 1 0.03
13 1 0.03
14 19 0.63
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.35
Consensus pattern (14 bp):
AAATCATTACTATC
Found at i:12547 original size:48 final size:49
Alignment explanation
Indices: 12485--12596 Score: 181
Period size: 48 Copynumber: 2.3 Consensus size: 49
12475 CTATCAAATC
*
12485 ATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAAATT-ATT
1 ATTACT-AATCATTAATATCAAATCATTAAAAATTAATAATAAATTCATT
* *
12534 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
1 ATTACTAATCATTAATATCAAATCATTAAAAATTAATAATAAATTCATT
12583 ATTACTAATCATTA
1 ATTACTAATCATTA
12597 CTAAATCATT
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 36 0.61
49 23 0.39
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (49 bp):
ATTACTAATCATTAATATCAAATCATTAAAAATTAATAATAAATTCATT
Found at i:12667 original size:21 final size:21
Alignment explanation
Indices: 12583--12723 Score: 68
Period size: 21 Copynumber: 7.0 Consensus size: 21
12573 TAATTTCATT
12583 ATTACTAATCATTACTAAATC
1 ATTACTAATCATTACTAAATC
* * *
12604 ATTAAT-ATCAAATCATTAAAT-
1 ATTACTAATC--ATTACTAAATC
* * * *
12625 ATTAATAATAATT--T-CATT
1 ATTACTAATCATTACTAAATC
12643 ATTACTAATCATTACTAAATC
1 ATTACTAATCATTACTAAATC
* *
12664 ATTACT-ATCAAATCATTAAAT-
1 ATTACTAATC--ATTACTAAATC
* * *
12685 ATTAATAATAATT--T-CATC
1 ATTACTAATCATTACTAAATC
12703 ATTACTAATCATTACTAAATC
1 ATTACTAATCATTACTAAATC
12724 TTATAAATAC
Statistics
Matches: 87, Mismatches: 19, Indels: 28
0.65 0.14 0.21
Matches are distributed among these distances:
17 4 0.05
18 24 0.28
20 12 0.14
21 27 0.31
22 20 0.23
ACGTcount: A:0.45, C:0.14, G:0.00, T:0.40
Consensus pattern (21 bp):
ATTACTAATCATTACTAAATC
Found at i:16268 original size:28 final size:30
Alignment explanation
Indices: 16228--16289 Score: 110
Period size: 28 Copynumber: 2.1 Consensus size: 30
16218 ATTTTTTATA
16228 TAATATAATATATAACTTAAACTAACAAAC
1 TAATATAATATATAACTTAAACTAACAAAC
16258 TAATAT-A-ATATAACTTAAACTAACAAAC
1 TAATATAATATATAACTTAAACTAACAAAC
16286 TAAT
1 TAAT
16290 TAACTAAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 25 0.78
29 1 0.03
30 6 0.19
ACGTcount: A:0.56, C:0.13, G:0.00, T:0.31
Consensus pattern (30 bp):
TAATATAATATATAACTTAAACTAACAAAC
Found at i:16742 original size:23 final size:23
Alignment explanation
Indices: 16712--16755 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
16702 GCTTGGCTAC
16712 AATCTCCCAGCTATGGATGCAGG
1 AATCTCCCAGCTATGGATGCAGG
16735 AATCTCCCAGCTATGGATGCA
1 AATCTCCCAGCTATGGATGCA
16756 ACCCATGCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (23 bp):
AATCTCCCAGCTATGGATGCAGG
Found at i:17753 original size:16 final size:16
Alignment explanation
Indices: 17710--17755 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
17700 TTTTAGTCCG
*
17710 TTTTAATATTTAAATA
1 TTTTAATATTTAATTA
* * *
17726 TTTAAATTTTTAATTT
1 TTTTAATATTTAATTA
17742 TTTTAATATTTAAT
1 TTTTAATATTTAAT
17756 GATAAATATT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
TTTTAATATTTAATTA
Found at i:25411 original size:24 final size:24
Alignment explanation
Indices: 25338--25425 Score: 79
Period size: 24 Copynumber: 3.7 Consensus size: 24
25328 ATTTCCGACT
* **
25338 TGAATTCTGTTCTGATACATGACC
1 TGAATTCTGTTCTGATATATGTTC
* * *
25362 TGAATTTTGTTCTGATTTCT-TATC
1 TGAATTCTGTTCTGATATATGT-TC
*
25386 TGGATTCTGTTCTGATATATGTTC
1 TGAATTCTGTTCTGATATATGTTC
* *
25410 TGAAGTCTGTTTTGAT
1 TGAATTCTGTTCTGAT
25426 TTCTGATATC
Statistics
Matches: 49, Mismatches: 13, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
24 48 0.98
25 1 0.02
ACGTcount: A:0.19, C:0.14, G:0.18, T:0.49
Consensus pattern (24 bp):
TGAATTCTGTTCTGATATATGTTC
Found at i:29369 original size:2 final size:2
Alignment explanation
Indices: 29362--29392 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
29352 GTTAATCTTA
*
29362 AT AT AT AT AT AT AT AT AT AT AT AG AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
29393 GACAAGTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (2 bp):
AT
Found at i:39773 original size:11 final size:11
Alignment explanation
Indices: 39759--39794 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
39749 AAATATATAA
*
39759 TATATATAGTT
1 TATATGTAGTT
39770 TATATGTAGTT
1 TATATGTAGTT
*
39781 TACATGTAGTT
1 TATATGTAGTT
39792 TAT
1 TAT
39795 TAATAAACTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.31, C:0.03, G:0.14, T:0.53
Consensus pattern (11 bp):
TATATGTAGTT
Found at i:39816 original size:2 final size:2
Alignment explanation
Indices: 39809--39885 Score: 52
Period size: 2 Copynumber: 39.0 Consensus size: 2
39799 AAACTATGTA
* * * *
39809 AT AT AT AT AT AA AT AT AT A- AT AT AT A- AG AT TT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * *
39849 AGT TT AT AT AT AT AGT AT AT -T AA AT AC AT AT AT AT AT
1 A-T AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT
39886 TACTATAGAA
Statistics
Matches: 57, Mismatches: 13, Indels: 10
0.71 0.16 0.12
Matches are distributed among these distances:
1 3 0.05
2 51 0.89
3 3 0.05
ACGTcount: A:0.48, C:0.01, G:0.05, T:0.45
Consensus pattern (2 bp):
AT
Found at i:39847 original size:15 final size:14
Alignment explanation
Indices: 39810--39862 Score: 54
Period size: 15 Copynumber: 3.7 Consensus size: 14
39800 AACTATGTAA
* *
39810 TATATATATAAATA
1 TATATATATAAGTT
39824 TATAATATATAAGATT
1 TAT-ATATATAAG-TT
*
39840 TATGTATAT-AGTT
1 TATATATATAAGTT
39853 TATATATATA
1 TATATATATA
39863 GTATATTAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
13 10 0.31
14 5 0.16
15 13 0.41
16 4 0.12
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (14 bp):
TATATATATAAGTT
Found at i:39897 original size:24 final size:24
Alignment explanation
Indices: 39853--39898 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
39843 GTATATAGTT
* *
39853 TATATATATAGTATATTAAATACA
1 TATATATATACTATATGAAATACA
39877 TATATATATTACTATA-GAAATA
1 TATATATA-TACTATATGAAATA
39899 GTTTACATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 13 0.68
25 6 0.32
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.41
Consensus pattern (24 bp):
TATATATATACTATATGAAATACA
Found at i:40323 original size:16 final size:16
Alignment explanation
Indices: 40304--40363 Score: 50
Period size: 16 Copynumber: 3.5 Consensus size: 16
40294 CAATAGTTAA
40304 TATATGTAACTTATAG
1 TATATGTAACTTATAG
40320 TATATGTATACATTTAACTA-
1 TATATGTA-AC--TT-A-TAG
*
40340 TATATGTTACTTATAG
1 TATATGTAACTTATAG
*
40356 TACATGTA
1 TATATGTA
40364 TATATAAACT
Statistics
Matches: 35, Mismatches: 3, Indels: 12
0.70 0.06 0.24
Matches are distributed among these distances:
15 2 0.06
16 15 0.43
17 4 0.11
19 4 0.11
20 8 0.23
21 2 0.06
ACGTcount: A:0.37, C:0.08, G:0.10, T:0.45
Consensus pattern (16 bp):
TATATGTAACTTATAG
Found at i:40387 original size:20 final size:20
Alignment explanation
Indices: 40362--40409 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
40352 ATAGTACATG
* *
40362 TATATATAAACTGTGTATAT
1 TATATATAAACTATATATAT
40382 TATATATAAACTATATATAT
1 TATATATAAACTATATATAT
*
40402 AATATATA
1 TATATATA
40410 TCTATATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (20 bp):
TATATATAAACTATATATAT
Found at i:40398 original size:13 final size:13
Alignment explanation
Indices: 40382--40426 Score: 56
Period size: 13 Copynumber: 3.3 Consensus size: 13
40372 CTGTGTATAT
40382 TATATATAAACTA
1 TATATATAAACTA
40395 TATATATAATA-TA
1 TATATATAA-ACTA
40408 TATCTATATAAACTA
1 TA--TATATAAACTA
40423 TATA
1 TATA
40427 AAGTAAATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
13 15 0.54
14 2 0.07
15 11 0.39
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (13 bp):
TATATATAAACTA
Found at i:40476 original size:365 final size:366
Alignment explanation
Indices: 40074--40776 Score: 1042
Period size: 363 Copynumber: 1.9 Consensus size: 366
40064 AGTATATATA
* * *
40074 TATATAGGTTATAGAAATACTATGCATAAATTATATAAAATAATAAAATATATAGTTTATAGAAA
1 TATATAGGTTATAGAAACACTATCCATAAACTATATAAAATAATAAAATATATAGTTTATAGAAA
* * * **
40139 CCCTAAACCCTAA-ATATTGAA-TCCT-AA-ATTGTAAACCCTAAACCCTAAACTTTATAAATTA
66 CCCTAAACCCTAAGAT-CT-AAGCCCTAAATATTGT--ACCCTAAACCCTAAAC--CATAAACGA
40200 TATATGTATAGACAAAGTTGATAATTCATATATAGTTTATATAAACAATAGTTCATATAAATTAT
125 TATATGTATAGACAAAGTTGATAATTCATATATAGTTTATATAAACAATAGTTCATATAAATTAT
* * * *
40265 ATATGTAACATTAATTTATAGTCTATAAACAATAGTTAATATATGTAACTTATAGTATATGTATA
190 ATATGTAACATTAATCTATAGTCTATAAACAATAGTTAATAAATGTAACCTATAGTACATGTATA
* * *
40330 CAT-TTAACTATATATGTTACTTATAGTACATGTATATATAAACTGTGTATATTATATATAAACT
255 CATGTAAACTATATATGTAACTTATAGTACATGTATATATAAACTGTGTATAATATATATAAACT
40394 ATA-TATAT-AATATATATCTATATAAACTATATAAAGTAAATTACT
320 ATAGTATATGAATATATATCTATATAAACTATATAAAGTAAATTACT
* * * *
40439 TATATAGTTTATAGAAACACTATCCATAAACTATATAAAGTAATAAAGTTTATAGTTTATAGAAA
1 TATATAGGTTATAGAAACACTATCCATAAACTATATAAAATAATAAAATATATAGTTTATAGAAA
* ** *
40504 CCCTAAACCCTAAGCTCTAAGCCCTAAATATTGTATTCTAAACCCTAAACCCTAAACGATATATG
66 CCCTAAACCCTAAGATCTAAGCCCTAAATATTGTACCCTAAACCCTAAACCATAAACGATATATG
* * *
40569 TATAGACACATTTGATAATTCATATATAGTTTATATAAACAATAGTTTATATAAATTATATATGT
131 TATAGACAAAGTTGATAATTCATATATAGTTTATATAAACAATAGTTCATATAAATTATATATGT
40634 AACATTAATCTATAGTCTATAAACAATAGTTAATAAATGTAACCTATAGTACATGTATACATGTA
196 AACATTAATCTATAGTCTATAAACAATAGTTAATAAATGTAACCTATAGTACATGTATACATGTA
* *
40699 AACTATATATGTAACTTATAGTACATGTATGTATAAACTGTGTATAATATATATAACCTATAGTA
261 AACTATATATGTAACTTATAGTACATGTATATATAAACTGTGTATAATATATATAAACTATAGTA
*
40764 TATGTATATATAT
326 TATGAATATATAT
40777 AATCTATTTA
Statistics
Matches: 302, Mismatches: 29, Indels: 13
0.88 0.08 0.04
Matches are distributed among these distances:
363 131 0.43
364 61 0.20
365 94 0.31
366 11 0.04
367 5 0.02
ACGTcount: A:0.44, C:0.11, G:0.08, T:0.37
Consensus pattern (366 bp):
TATATAGGTTATAGAAACACTATCCATAAACTATATAAAATAATAAAATATATAGTTTATAGAAA
CCCTAAACCCTAAGATCTAAGCCCTAAATATTGTACCCTAAACCCTAAACCATAAACGATATATG
TATAGACAAAGTTGATAATTCATATATAGTTTATATAAACAATAGTTCATATAAATTATATATGT
AACATTAATCTATAGTCTATAAACAATAGTTAATAAATGTAACCTATAGTACATGTATACATGTA
AACTATATATGTAACTTATAGTACATGTATATATAAACTGTGTATAATATATATAAACTATAGTA
TATGAATATATATCTATATAAACTATATAAAGTAAATTACT
Found at i:40777 original size:24 final size:23
Alignment explanation
Indices: 40702--40804 Score: 78
Period size: 24 Copynumber: 4.7 Consensus size: 23
40692 ACATGTAAAC
* *
40702 TATATATGTAACTTATAGTACATG
1 TATATATATAAC-TATAGTATATG
* *
40726 TATGTATA-AACTGT-GTATA--
1 TATATATATAACTATAGTATATG
40745 -ATATATATAACCTATAGTATATG
1 TATATATATAA-CTATAGTATATG
*
40768 TATATATATAATCTAT-TTATATG
1 TATATATATAA-CTATAGTATATG
40791 T-TATATA-AACTATA
1 TATATATATAACTATA
40805 TATGTAACCT
Statistics
Matches: 64, Mismatches: 8, Indels: 17
0.72 0.09 0.19
Matches are distributed among these distances:
18 6 0.09
19 2 0.03
20 7 0.11
21 11 0.17
22 8 0.12
23 10 0.16
24 20 0.31
ACGTcount: A:0.41, C:0.07, G:0.09, T:0.44
Consensus pattern (23 bp):
TATATATATAACTATAGTATATG
Found at i:40864 original size:50 final size:51
Alignment explanation
Indices: 40809--40917 Score: 130
Period size: 57 Copynumber: 2.0 Consensus size: 51
40799 ACTATATATG
*
40809 TAACCTATAG-TTTATAAACAATAGTTTATATTGATGTACTATATAATTTA
1 TAACCTATAGATTTATAAACAATAGTTTATATTAATGTACTATATAATTTA
* *
40859 TAACCTATAGTATATAATTTATAAACTATAGTTTATATTAATGTACTATATAGTTTA
1 TAACCTATAG------ATTTATAAACAATAGTTTATATTAATGTACTATATAATTTA
40916 TA
1 TA
40918 TTAATGTTAA
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
50 10 0.20
57 39 0.80
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.45
Consensus pattern (51 bp):
TAACCTATAGATTTATAAACAATAGTTTATATTAATGTACTATATAATTTA
Found at i:40874 original size:21 final size:21
Alignment explanation
Indices: 40848--40895 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
40838 ATTGATGTAC
*
40848 TATATAATTTATAACCTATAG
1 TATATAATTTATAAACTATAG
40869 TATATAATTTATAAACTATAG
1 TATATAATTTATAAACTATAG
*
40890 TTTATA
1 TATATA
40896 TTAATGTACT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.44, C:0.06, G:0.04, T:0.46
Consensus pattern (21 bp):
TATATAATTTATAAACTATAG
Found at i:41082 original size:18 final size:17
Alignment explanation
Indices: 41032--41084 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 17
41022 AATATTAACA
41032 TATTAACTATAATT-TA-
1 TATTAA-TATAATTATAG
*
41048 TATTAATATAGTATATAG
1 TATTAATATAAT-TATAG
41066 TATTAATATTAATTATAG
1 TATTAATA-TAATTATAG
41084 T
1 T
41085 CTATAAACCA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
15 5 0.16
16 7 0.23
17 2 0.06
18 14 0.45
19 3 0.10
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (17 bp):
TATTAATATAATTATAG
Found at i:41125 original size:24 final size:23
Alignment explanation
Indices: 41006--41141 Score: 77
Period size: 24 Copynumber: 5.9 Consensus size: 23
40996 ATAGTTTATA
*
41006 AACTATAGT-T-TACATTAATATT
1 AACTATAGTATATAAATT-ATATT
* *
41028 AAC-ATATTAACTATAATTTATATT
1 AACTATAGT-A-TATAAATTATATT
*
41052 AA-TATAGTATATAGTATTAATATT
1 AACTATAGTATATA-AATT-ATATT
* * **
41076 AATTATAGTCTATAAACCATA-T
1 AACTATAGTATATAAATTATATT
*
41098 -ACTATATTAATATAAATTATATT
1 AACTATAGT-ATATAAATTATATT
* *
41121 AACTATAGTTTATAAACTATA
1 AACTATAGTATATAAATTATA
41142 CTATATAATT
Statistics
Matches: 85, Mismatches: 18, Indels: 21
0.69 0.15 0.17
Matches are distributed among these distances:
21 10 0.12
22 17 0.20
23 17 0.20
24 27 0.32
25 14 0.16
ACGTcount: A:0.46, C:0.07, G:0.04, T:0.43
Consensus pattern (23 bp):
AACTATAGTATATAAATTATATT
Found at i:41169 original size:21 final size:21
Alignment explanation
Indices: 41094--41162 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
41084 TCTATAAACC
41094 ATATACTATATTAA--TATAAA
1 ATATACTATA-TAATTTATAAA
* * *
41114 TTATATTAACTATAGTTTATAAA
1 ATATACT-A-TATAATTTATAAA
*
41137 CTATACTATATAATTTATAAA
1 ATATACTATATAATTTATAAA
41158 ATATA
1 ATATA
41163 GTTTATATTA
Statistics
Matches: 38, Mismatches: 7, Indels: 7
0.73 0.13 0.13
Matches are distributed among these distances:
20 5 0.13
21 19 0.50
22 3 0.08
23 11 0.29
ACGTcount: A:0.49, C:0.06, G:0.01, T:0.43
Consensus pattern (21 bp):
ATATACTATATAATTTATAAA
Found at i:41178 original size:6 final size:6
Alignment explanation
Indices: 41167--41305 Score: 71
Period size: 6 Copynumber: 23.3 Consensus size: 6
41157 AATATAGTTT
* * * **
41167 ATATTA ATATTA ATTTTA TAGATT- ATATTTT ATATTA ATATTA ATTACAA
1 ATATTA ATATTA ATATTA -ATATTA ATA-TTA ATATTA ATATTA A-TATTA
* * *
41217 ATTATAA ACTATATT ATATTA ATA-TA A-GTTA ATATTA ATATT- A-ATT-
1 A-TATTA A-TAT-TA ATATTA ATATTA ATATTA ATATTA ATATTA ATATTA
41263 ATATTA ATATTA AT-TATA ATATATA AT-TT- ATATTA ATATTA AT
1 ATATTA ATATTA ATAT-TA ATAT-TA ATATTA ATATTA ATATTA AT
41306 TACAAATAGT
Statistics
Matches: 106, Mismatches: 14, Indels: 26
0.73 0.10 0.18
Matches are distributed among these distances:
4 6 0.06
5 16 0.15
6 55 0.52
7 28 0.26
8 1 0.01
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (6 bp):
ATATTA
Found at i:41186 original size:24 final size:25
Alignment explanation
Indices: 41159--41205 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
41149 ATTTATAAAA
*
41159 TATAGTTTATA-TTAATATTAATTT
1 TATAGATTATATTTAATATTAATTT
*
41183 TATAGATTATATTTTATATTAAT
1 TATAGATTATATTTAATATTAAT
41206 ATTAATTACA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 10 0.50
25 10 0.50
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.57
Consensus pattern (25 bp):
TATAGATTATATTTAATATTAATTT
Found at i:41199 original size:31 final size:30
Alignment explanation
Indices: 41147--41306 Score: 132
Period size: 31 Copynumber: 5.2 Consensus size: 30
41137 CTATACTATA
* *
41147 TAATTTATAAAATATAGTTTATATTAATAT
1 TAATTTATAAATTATATTTTATATTAATAT
*
41177 TAATTTTATAGATTATATTTTATATTAATAT
1 TAA-TTTATAAATTATATTTTATATTAATAT
*
41208 TAA-TTACAAATTATAAACTATATTATATTAATA-
1 TAATTTATAAATTAT--A-T-T-TTATATTAATAT
* *
41241 TAAGTTA-ATATTAATATTAATTATATTAATAT
1 TAATTTATAAATT-ATATT--TTATATTAATAT
*
41273 TAA-TTAT-AATATATAATTTATATTAATAT
1 TAATTTATAAAT-TATATTTTATATTAATAT
41302 TAATT
1 TAATT
41307 ACAAATAGTT
Statistics
Matches: 109, Mismatches: 8, Indels: 26
0.76 0.06 0.18
Matches are distributed among these distances:
29 24 0.22
30 5 0.05
31 50 0.46
32 6 0.06
33 8 0.07
34 16 0.15
ACGTcount: A:0.46, C:0.01, G:0.02, T:0.51
Consensus pattern (30 bp):
TAATTTATAAATTATATTTTATATTAATAT
Found at i:41255 original size:50 final size:46
Alignment explanation
Indices: 41198--41312 Score: 135
Period size: 44 Copynumber: 2.5 Consensus size: 46
41188 ATTATATTTT
*
41198 ATATTAATATTAATTACAAATTATAAACTATATTATATTAATATAAGTTA
1 ATATTAATATTAATTACAAATTA-AAACTA-ATTATAAT-ATATAA-TTA
* * * *
41248 ATATTAATATTAATT--ATATTAATATTAATTATAATATATAATTT
1 ATATTAATATTAATTACAAATTAAAACTAATTATAATATATAATTA
41292 ATATTAATATTAATTACAAAT
1 ATATTAATATTAATTACAAAT
41313 AGTTTATTAA
Statistics
Matches: 57, Mismatches: 6, Indels: 8
0.80 0.08 0.11
Matches are distributed among these distances:
44 17 0.30
45 6 0.11
46 10 0.18
47 4 0.07
48 5 0.09
50 15 0.26
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.47
Consensus pattern (46 bp):
ATATTAATATTAATTACAAATTAAAACTAATTATAATATATAATTA
Found at i:42078 original size:6 final size:6
Alignment explanation
Indices: 42062--42119 Score: 53
Period size: 6 Copynumber: 9.7 Consensus size: 6
42052 ACCCAAACAG
* * *** *
42062 AACCCA CACCCA TACCCA AACCCA AACCCA AACTTG AACCCA AACTCA
1 AACCCA AACCCA AACCCA AACCCA AACCCA AACCCA AACCCA AACCCA
*
42110 AACCTA AACC
1 AACCCA AACC
42120 TTAAAAAACC
Statistics
Matches: 40, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.45, C:0.45, G:0.02, T:0.09
Consensus pattern (6 bp):
AACCCA
Found at i:42119 original size:18 final size:18
Alignment explanation
Indices: 42062--42119 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
42052 ACCCAAACAG
* * *
42062 AACCCACACCCATACCCA
1 AACCCAAACCCAAACCTA
* *
42080 AACCCAAACCCAAACTTG
1 AACCCAAACCCAAACCTA
*
42098 AACCCAAACTCAAACCTA
1 AACCCAAACCCAAACCTA
42116 AACC
1 AACC
42120 TTAAAAAACC
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.45, C:0.45, G:0.02, T:0.09
Consensus pattern (18 bp):
AACCCAAACCCAAACCTA
Found at i:60347 original size:60 final size:60
Alignment explanation
Indices: 60181--60351 Score: 186
Period size: 60 Copynumber: 2.9 Consensus size: 60
60171 CGGGTGACCG
* * * * **
60181 TTTTGTACCTTTTGATAGTTGGAGGACTCAACAAAGTAATAGCCTATAGTAGATTGACTA
1 TTTTGTAACTTTTGATAGTCGGAGGACTCAACAAAGCAATAGCCTATAGTCGATAAACTA
* * *
60241 TATTTGTAACTTTTGATAGCCGGA-GACTCAACAAAACACTAGCCTATAGTCGATAAA-TCA
1 T-TTTGTAACTTTTGATAGTCGGAGGACTCAACAAAGCAATAGCCTATAGTCGATAAACT-A
* * *
60301 TTTTGTAACTTTTAATAGTCGGAGGACTAAACAAAGCAGT-GTCCTATAGTC
1 TTTTGTAACTTTTGATAGTCGGAGGACTCAACAAAGCAATAG-CCTATAGTC
60352 AGGGGACCAT
Statistics
Matches: 93, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
59 22 0.24
60 52 0.56
61 19 0.20
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.32
Consensus pattern (60 bp):
TTTTGTAACTTTTGATAGTCGGAGGACTCAACAAAGCAATAGCCTATAGTCGATAAACTA
Found at i:60496 original size:16 final size:19
Alignment explanation
Indices: 60475--60511 Score: 53
Period size: 16 Copynumber: 2.1 Consensus size: 19
60465 CTTTAAAACT
60475 ATTAAAA-A-TTC-AAAAA
1 ATTAAAATATTTCTAAAAA
60491 ATTAAAATATTTCTAAAAA
1 ATTAAAATATTTCTAAAAA
60510 AT
1 AT
60512 CCTTAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 7 0.39
17 1 0.06
18 3 0.17
19 7 0.39
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.32
Consensus pattern (19 bp):
ATTAAAATATTTCTAAAAA
Found at i:61331 original size:21 final size:20
Alignment explanation
Indices: 61292--61331 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
61282 CCAAATCCAT
*
61292 AAACTCAAATTTCTAAATTC
1 AAACTCAAATCTCTAAATTC
*
61312 AAACTCTAAATCTCTTAATT
1 AAACTC-AAATCTCTAAATT
61332 GTAACACACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.42, C:0.20, G:0.00, T:0.38
Consensus pattern (20 bp):
AAACTCAAATCTCTAAATTC
Found at i:65830 original size:25 final size:26
Alignment explanation
Indices: 65802--65850 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
65792 CTTATTTTAC
65802 TTTCTACGTTTTCTTATT-TTTTTGT
1 TTTCTACGTTTTCTTATTATTTTTGT
** *
65827 TTTCTATTTTTTGTTATTATTTTT
1 TTTCTACGTTTTCTTATTATTTTT
65851 TATTTTTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 15 0.75
26 5 0.25
ACGTcount: A:0.10, C:0.08, G:0.06, T:0.76
Consensus pattern (26 bp):
TTTCTACGTTTTCTTATTATTTTTGT
Found at i:65838 original size:14 final size:14
Alignment explanation
Indices: 65809--65865 Score: 62
Period size: 14 Copynumber: 4.0 Consensus size: 14
65799 TACTTTCTAC
65809 GTTTTCTTATTTTTTT
1 GTTTTC-TA-TTTTTT
65825 GTTTTCTATTTTTT
1 GTTTTCTATTTTTT
*
65839 GTTAT-TATTTTTT
1 GTTTTCTATTTTTT
* *
65852 ATTTTTTATTTTTT
1 GTTTTCTATTTTTT
65866 TGTATTTTCC
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
13 11 0.30
14 18 0.49
15 2 0.05
16 6 0.16
ACGTcount: A:0.11, C:0.04, G:0.05, T:0.81
Consensus pattern (14 bp):
GTTTTCTATTTTTT
Found at i:65873 original size:7 final size:7
Alignment explanation
Indices: 65810--65865 Score: 53
Period size: 7 Copynumber: 7.9 Consensus size: 7
65800 ACTTTCTACG
65810 TTTTCTTA
1 TTTT-TTA
65818 TTTTTT-
1 TTTTTTA
65824 TGTTTTCTA
1 T-TTTT-TA
65833 TTTTTT-
1 TTTTTTA
* *
65839 GTTATTA
1 TTTTTTA
65846 TTTTTTA
1 TTTTTTA
65853 TTTTTTA
1 TTTTTTA
65860 TTTTTT
1 TTTTTT
65866 TGTATTTTCC
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
6 5 0.12
7 25 0.62
8 9 0.22
9 1 0.03
ACGTcount: A:0.11, C:0.04, G:0.04, T:0.82
Consensus pattern (7 bp):
TTTTTTA
Found at i:65907 original size:2 final size:2
Alignment explanation
Indices: 65900--65946 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
65890 GTTGTTTTGT
65900 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
65942 TA TA T
1 TA TA T
65947 TTCAAATATT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:66042 original size:2 final size:2
Alignment explanation
Indices: 66037--66073 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
66027 TATATATATA
66037 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
66074 ATACTATTAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:73624 original size:23 final size:23
Alignment explanation
Indices: 73590--73672 Score: 121
Period size: 23 Copynumber: 3.6 Consensus size: 23
73580 ATTATTATAT
*
73590 GGCACTATGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTCTACGC
* *
73613 AGCACTACGGTGCAATTCTACGT
1 GGCACTACGGTGCAATTCTACGC
*
73636 GGCACTACGGTGCAATTCTACAC
1 GGCACTACGGTGCAATTCTACGC
*
73659 GGCACTTCGGTGCA
1 GGCACTACGGTGCA
73673 TTTATACGAG
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 53 1.00
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACGC
Found at i:77011 original size:23 final size:23
Alignment explanation
Indices: 76921--77003 Score: 121
Period size: 23 Copynumber: 3.6 Consensus size: 23
76911 ATTATTATAT
*
76921 GGCACTATGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTCTACGC
* * *
76944 AGCAGTACGGTGCAATTCTACGT
1 GGCACTACGGTGCAATTCTACGC
76967 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTCTACGC
*
76990 GGCACTTCGGTGCA
1 GGCACTACGGTGCA
77004 TTTATACGAG
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 52 1.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACGC
Found at i:81986 original size:15 final size:15
Alignment explanation
Indices: 81968--82004 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
81958 TTGAAAAAAC
81968 AAAAAGAA-AAAAGA
1 AAAAAGAACAAAAGA
81982 GAAAAAGAACAAAAGA
1 -AAAAAGAACAAAAGA
81998 AAAAAGA
1 AAAAAGA
82005 GAAGAAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 15 0.71
16 6 0.29
ACGTcount: A:0.81, C:0.03, G:0.16, T:0.00
Consensus pattern (15 bp):
AAAAAGAACAAAAGA
Found at i:81995 original size:23 final size:23
Alignment explanation
Indices: 81961--82013 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
81951 CCCTAAGTTG
81961 AAAAAACAAAAAGAAAAAAGAGA
1 AAAAAACAAAAAGAAAAAAGAGA
81984 AAAAGAAC-AAAAGAAAAAAGAGA
1 AAAA-AACAAAAAGAAAAAAGAGA
82007 AGAAAAA
1 A-AAAAA
82014 TAAGGTAGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
23 22 0.79
24 6 0.21
ACGTcount: A:0.81, C:0.04, G:0.15, T:0.00
Consensus pattern (23 bp):
AAAAAACAAAAAGAAAAAAGAGA
Found at i:83287 original size:110 final size:107
Alignment explanation
Indices: 83073--83351 Score: 293
Period size: 110 Copynumber: 2.6 Consensus size: 107
83063 AACGAAGGGG
* * *
83073 TTTCCCAG-T-TTCAGAGCCAATTTCAACTTCACATCGAAGGATATTGGACTCAATG-CAACACA
1 TTTCCCAGTTCTTCAGAGTCAATTTCAACTTCA-AGCGAAGGATATTGGACTCGA-GACAACACA
* * *
83135 AGCTCAACTTCACGATGAAGGGGAGACTGATTGTCAACAAACAA
64 AGCTCAACTTCACGACGAAGGGGAGACTGACTATCAACAAACAA
* * *
83179 TTTCTCAGTTTCATTCAGAGTCAATTTCAACTTCATAGAGAAGGATATTAGACTCGAGACAACAC
1 TTTCCCAG-TTC-TTCAGAGTCAATTTCAACTTCA-AGCGAAGGATATTGGACTCGAGACAACAC
* * **
83244 AAGCTCAACTTCAC-AGCGAAGGGGCGACTGGCTATCAGTAAACAA
63 AAGCTCAACTTCACGA-CGAAGGGGAGACTGACTATCAACAAACAA
* * *
83289 TTTCCCAGTTC--CAGAGAT-AATTTCAACTTCAAGGCGGAGGATATTGGACTCGAAACAATACA
1 TTTCCCAGTTCTTCAGAG-TCAATTTCAACTTCAA-GCGAAGGATATTGGACTCGAGACAACACA
83351 A
64 A
83352 CTTACTTGGA
Statistics
Matches: 145, Mismatches: 20, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
105 1 0.01
106 50 0.34
107 1 0.01
108 1 0.01
109 5 0.03
110 87 0.60
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (107 bp):
TTTCCCAGTTCTTCAGAGTCAATTTCAACTTCAAGCGAAGGATATTGGACTCGAGACAACACAAG
CTCAACTTCACGACGAAGGGGAGACTGACTATCAACAAACAA
Found at i:87179 original size:3 final size:3
Alignment explanation
Indices: 87165--87205 Score: 57
Period size: 3 Copynumber: 13.7 Consensus size: 3
87155 AAATATGTAA
*
87165 AAT AAT ATT AAT AAT AAT AAT AAT ACAT -AT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AA
87206 GAACGAGATG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 30 0.88
4 2 0.06
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:87509 original size:48 final size:48
Alignment explanation
Indices: 87441--88147 Score: 817
Period size: 48 Copynumber: 15.3 Consensus size: 48
87431 CCGCTGTCAC
* * * * ** *
87441 AGGGAATACCAAACCTTGGAAAAAAGAGATATGTTCCGCTT-CTTCTGA
1 AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTAC-TCTGA
* *
87489 AGGGAATATCAAATCATGGA-AAAAGAGACCTGTTCCACTTACTCTGA
1 AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
* * * *
87536 AGGGAATGTCAGATC-T---G--G-TAGACTTGTTCCACTTACTCTGA
1 AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
*
87577 AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCGCTTACTCTGA
1 AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
* * * **
87625 AGGAAATATCAGATCTTGGAGAAGATAGATTTGTTCCACTTACTCTGA
1 AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
* *
87673 AGGGAATATCAAATCTTTGAGAAGAGAGACCTGTTCCGCTTACTCTGA
1 AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
* * * *
87721 AGGGAATATCAGATC-T---G--G-CAGACTTGTTCCACTTACTCTAA
1 AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
87762 AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
1 AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
* *
87810 AGGGAATATCAGATC-T-G-G--G-G-GACTTGTTCCACTTACTCTGA
1 AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
*
87851 AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCGCTTACTCTGA
1 AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
* * * **
87899 AGGAAATATCAGATCTTGGAGAAGATAGATTTGTTCCACTTACTCTGA
1 AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
* *
87947 AGGGAATATCAAATCTTTGAGAAGAGAGACCTGTTCCGCTTACTCTGA
1 AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
* *
87995 AGGGAATATCAAATCTTTGAGAAGAGAGACCTGTTCCGCTTACTCTGA
1 AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
* * * *
88043 AGGGAATATCAGATC-T---G--G-CAGACTTGTTCCACTTACTCTAA
1 AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
88084 AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
1 AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
*
88132 AGGGAATATCAGATCT
1 AGGGAATATCAAATCT
88148 GGGGGAGTTG
Statistics
Matches: 563, Mismatches: 66, Indels: 60
0.82 0.10 0.09
Matches are distributed among these distances:
41 134 0.24
42 7 0.01
43 2 0.00
44 3 0.01
45 4 0.01
46 3 0.01
47 42 0.07
48 368 0.65
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (48 bp):
AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
Found at i:87717 original size:185 final size:184
Alignment explanation
Indices: 87484--88058 Score: 858
Period size: 185 Copynumber: 3.1 Consensus size: 184
87474 TTCCGCTTCT
* * * *
87484 TCTGAAGGGAATATCAAATCATGGA-AAAAGAGACCTGTTCCACTTACTCTGAAGGGAATGTCAG
1 TCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCGCTTACTCTGAAGGGAATATCAG
87548 ATCTGGTAGACTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTC
66 ATCTGGTAGACTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTC
* *
87613 CGCTTACTCTGAAGGAAATATCAGATCTTGGAGAAGATAGATTTGTTCCACTTAC
131 CGCTTACTCTGAAGGGAATATCAGATCTTGGAGAAGA-AGACTTGTTCCACTTAC
*
87668 TCTGAAGGGAATATCAAATCTTTGAGAAGAGAGACCTGTTCCGCTTACTCTGAAGGGAATATCAG
1 TCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCGCTTACTCTGAAGGGAATATCAG
* *
87733 ATCTGGCAGACTTGTTCCACTTACTCTAAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTC
66 ATCTGGTAGACTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTC
*
87798 CACTTACTCTGAAGGGAATATCAGATC-TGG-G--G--GACTTGTTCCACTTAC
131 CGCTTACTCTGAAGGGAATATCAGATCTTGGAGAAGAAGACTTGTTCCACTTAC
*
87846 TCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCGCTTACTCTGAAGGAAATATCAG
1 TCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCGCTTACTCTGAAGGGAATATCAG
* *
87911 ATCTTGGAGAAGATAGATTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTTGAGAAGAGAGA
66 ATC-T---G--G-TAGACTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAGAGA
* * * *
87976 CCTGTTCCGCTTACTCTGAAGGGAATATCAAATCTTTGAGAAGAGAGACCTGTTCCGCTTAC
124 CCTGTTCCGCTTACTCTGAAGGGAATATCAGATCTTGGAGAAGA-AGACTTGTTCCACTTAC
*
88038 TCTGAAGGGAATATCAGATCT
1 TCTGAAGGGAATATCAAATCT
88059 GGCAGACTTG
Statistics
Matches: 354, Mismatches: 22, Indels: 22
0.89 0.06 0.06
Matches are distributed among these distances:
178 81 0.23
179 1 0.00
181 1 0.00
182 1 0.00
183 1 0.00
184 27 0.08
185 204 0.58
186 2 0.01
187 1 0.00
189 1 0.00
192 34 0.10
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (184 bp):
TCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCGCTTACTCTGAAGGGAATATCAG
ATCTGGTAGACTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTC
CGCTTACTCTGAAGGGAATATCAGATCTTGGAGAAGAAGACTTGTTCCACTTAC
Found at i:88080 original size:185 final size:182
Alignment explanation
Indices: 87484--88147 Score: 819
Period size: 185 Copynumber: 3.6 Consensus size: 182
87474 TTCCGCTTCT
* * *
87484 TCTGAAGGGAATATCAAATCATGGAAAAAGAGACCTGTTCCACTTACTCTGAAGGGAATGTCAGA
1 TCTGAAGGGAATATCAAATCTTGG--AGAGAGACCTGTTCCACTTACTCTGAAGGGAATATCAGA
87549 TCTGGTAGACTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCC
64 TCTGGTAGACTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCC
* * * *
87614 GCTTACTCTGAAGGAAATATCAGATCTTGGAGAAGATAGATTTGTTCCACTTAC
129 GCTTACTCTGAAGGGAATATCAGATCTTTGAGAAGAGAGACTTGTTCCACTTAC
*
87668 TCTGAAGGGAATATCAAATCTTTGAGAAGAGAGACCTGTTCCGCTTACTCTGAAGGGAATATCAG
1 TCTGAAGGGAATATCAAATC-TTG-G-AGAGAGACCTGTTCCACTTACTCTGAAGGGAATATCAG
* *
87733 ATCTGGCAGACTTGTTCCACTTACTCTAAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTC
63 ATCTGGTAGACTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTC
*
87798 CACTTACTCTGAAGGGAATATCAGATC--TG-G--G-G-GACTTGTTCCACTTAC
128 CGCTTACTCTGAAGGGAATATCAGATCTTTGAGAAGAGAGACTTGTTCCACTTAC
* *
87846 TCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCGCTTACTCTGAAGGAAATATCAG
1 TCTGAAGGGAATATCAAATCTT-G-G-AGAGAGACCTGTTCCACTTACTCTGAAGGGAATATCAG
* *
87911 ATCTTGGAGAAGATAGATTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTTGAGAAGAGAGA
63 ATC-T---G--G-TAGACTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAGAGA
* * *
87976 CCTGTTCCGCTTACTCTGAAGGGAATATCAAATCTTTGAGAAGAGAGACCTGTTCCGCTTAC
121 CCTGTTCCGCTTACTCTGAAGGGAATATCAGATCTTTGAGAAGAGAGACTTGTTCCACTTAC
* * * * *
88038 TCTGAAGGGAATATCAGATC-T-G-G-CAGACTTGTTCCACTTACTCTAAAGGGAATATCAAATC
1 TCTGAAGGGAATATCAAATCTTGGAGAGAGACCTGTTCCACTTACTCTGAAGGGAATATCAGATC
* * *
88099 TTGGAGAAGAGAGACCTGTTCCACTTACTCTGAAGGGAATATCAGATCT
66 -T---G--G-TAGACTTGTTCCACTTACTCTGAAGGGAATATCAAATCT
88148 GGGGGAGTTG
Statistics
Matches: 432, Mismatches: 31, Indels: 33
0.87 0.06 0.07
Matches are distributed among these distances:
177 2 0.00
178 79 0.18
179 1 0.00
180 1 0.00
182 2 0.00
183 1 0.00
184 21 0.05
185 283 0.66
186 2 0.00
187 2 0.00
188 2 0.00
190 1 0.00
191 2 0.00
192 33 0.08
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.28
Consensus pattern (182 bp):
TCTGAAGGGAATATCAAATCTTGGAGAGAGACCTGTTCCACTTACTCTGAAGGGAATATCAGATC
TGGTAGACTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCGC
TTACTCTGAAGGGAATATCAGATCTTTGAGAAGAGAGACTTGTTCCACTTAC
Found at i:88129 original size:89 final size:89
Alignment explanation
Indices: 87973--88149 Score: 309
Period size: 89 Copynumber: 2.0 Consensus size: 89
87963 TTGAGAAGAG
* * * *
87973 AGACCTGTTCCGCTTACTCTGAAGGGAATATCAAATCTTTGAGAAGAGAGACCTGTTCCGCTTAC
1 AGACCTGTTCCACTTACTCTAAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTAC
88038 TCTGAAGGGAATATCAGATCTGGC
66 TCTGAAGGGAATATCAGATCTGGC
*
88062 AGACTTGTTCCACTTACTCTAAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTAC
1 AGACCTGTTCCACTTACTCTAAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTAC
88127 TCTGAAGGGAATATCAGATCTGG
66 TCTGAAGGGAATATCAGATCTGG
88150 GGGAGTTGAT
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
89 83 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (89 bp):
AGACCTGTTCCACTTACTCTAAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTAC
TCTGAAGGGAATATCAGATCTGGC
Found at i:88152 original size:322 final size:322
Alignment explanation
Indices: 87555--88162 Score: 1063
Period size: 322 Copynumber: 1.9 Consensus size: 322
87545 CAGATCTGGT
* * *
87555 AGACTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCGCTTAC
1 AGACCTGTTCCACTTACTCTGAAGGAAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTAC
* * **
87620 TCTGAAGGAAATATCAGATCTTGGAGAAGATAGATTTGTTCCACTTACTCTGAAGGGAATATCAA
66 TCTGAAGGAAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGAAGGGAATATCAA
87685 ATCTTTGAGAAGAGAGACCTGTTCCGCTTACTCTGAAGGGAATATCAGATCTGGCAGACTTGTTC
131 ATCTTTGAGAAGAGAGACCTGTTCCGCTTACTCTGAAGGGAATATCAGATCTGGCAGACTTGTTC
87750 CACTTACTCTAAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGAAGGGA
196 CACTTACTCTAAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGAAGGGA
*
87815 ATATCAGATCTGGGGGACTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAG
261 ATATCAGATCTGGGGGACTTGATCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAG
* * * **
87877 AGACCTGTTCCGCTTACTCTGAAGGAAATATCAGATCTTGGAGAAGATAGATTTGTTCCACTTAC
1 AGACCTGTTCCACTTACTCTGAAGGAAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTAC
* * *
87942 TCTGAAGGGAATATCAAATCTTTGAGAAGAGAGACCTGTTCCGCTTACTCTGAAGGGAATATCAA
66 TCTGAAGGAAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGAAGGGAATATCAA
88007 ATCTTTGAGAAGAGAGACCTGTTCCGCTTACTCTGAAGGGAATATCAGATCTGGCAGACTTGTTC
131 ATCTTTGAGAAGAGAGACCTGTTCCGCTTACTCTGAAGGGAATATCAGATCTGGCAGACTTGTTC
88072 CACTTACTCTAAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGAAGGGA
196 CACTTACTCTAAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGAAGGGA
*
88137 ATATCAGATCTGGGGGAGTTGATCCA
261 ATATCAGATCTGGGGGACTTGATCCA
88163 TTAAATCGGG
Statistics
Matches: 269, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
322 269 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.28
Consensus pattern (322 bp):
AGACCTGTTCCACTTACTCTGAAGGAAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTAC
TCTGAAGGAAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGAAGGGAATATCAA
ATCTTTGAGAAGAGAGACCTGTTCCGCTTACTCTGAAGGGAATATCAGATCTGGCAGACTTGTTC
CACTTACTCTAAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGAAGGGA
ATATCAGATCTGGGGGACTTGATCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAG
Found at i:89336 original size:27 final size:27
Alignment explanation
Indices: 89287--89348 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 27
89277 CCTCCTTTTA
89287 TTTTTTTC-TTTTCTTTCTCTTTC-TT
1 TTTTTTTCATTTTCTTTCTCTTTCATT
*
89312 TTATTTTTCATTTT-TTGTCTTTTTCATT
1 TT-TTTTTCATTTTCTT-TCTCTTTCATT
89340 TTTTTTTCA
1 TTTTTTTCA
89349 AGCGAAATAC
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
25 2 0.06
26 8 0.25
27 18 0.56
28 4 0.12
ACGTcount: A:0.06, C:0.15, G:0.02, T:0.77
Consensus pattern (27 bp):
TTTTTTTCATTTTCTTTCTCTTTCATT
Found at i:102175 original size:3 final size:3
Alignment explanation
Indices: 102161--102201 Score: 57
Period size: 3 Copynumber: 13.7 Consensus size: 3
102151 AAATATGTAA
*
102161 AAT AAT ATT AAT AAT AAT AAT AAT ACAT -AT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AA
102202 GAACGAGATG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 30 0.88
4 2 0.06
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:102845 original size:2 final size:2
Alignment explanation
Indices: 102838--102862 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
102828 CTAATATTCT
102838 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
102863 TTTTCTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:102963 original size:20 final size:21
Alignment explanation
Indices: 102936--102993 Score: 68
Period size: 20 Copynumber: 2.8 Consensus size: 21
102926 CCTCTTATTT
102936 TATTTTCTACGTT-TTTTTTTG
1 TATTTTCTA-GTTATTTTTTTG
*
102957 T-TTTTCTATTTATTTTTTTG
1 TATTTTCTAGTTATTTTTTTG
102977 TATTTTCCTA-TTATTTT
1 TATTTT-CTAGTTATTTT
102994 GCTTAGTTGT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
19 2 0.06
20 16 0.48
21 12 0.36
22 3 0.09
ACGTcount: A:0.12, C:0.09, G:0.05, T:0.74
Consensus pattern (21 bp):
TATTTTCTAGTTATTTTTTTG
Found at i:102975 original size:22 final size:21
Alignment explanation
Indices: 102949--102993 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
102939 TTTCTACGTT
102949 TTTTTTTGT-TTTT-CTATTTA
1 TTTTTTTGTATTTTCCTA-TTA
102969 TTTTTTTGTATTTTCCTATTA
1 TTTTTTTGTATTTTCCTATTA
102990 TTTT
1 TTTT
102994 GCTTAGTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 9 0.39
21 11 0.48
22 3 0.13
ACGTcount: A:0.11, C:0.07, G:0.04, T:0.78
Consensus pattern (21 bp):
TTTTTTTGTATTTTCCTATTA
Found at i:109619 original size:18 final size:19
Alignment explanation
Indices: 109580--109620 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
109570 TAAAATATTC
*
109580 GTTTATTTATTTCATTAAT
1 GTTTATTTATTTCATAAAT
*
109599 GTTTATTTATTTTA-AAAT
1 GTTTATTTATTTCATAAAT
109617 GTTT
1 GTTT
109621 GATGAAAGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.63
Consensus pattern (19 bp):
GTTTATTTATTTCATAAAT
Found at i:110648 original size:6 final size:6
Alignment explanation
Indices: 110599--110641 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
110589 TGGTGAAGCT
* * * *
110599 TATGCA TATGCA TATGTA TATGTA TATATA TATATA TATGTA T
1 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA T
110642 GTATATGCAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.37, C:0.05, G:0.12, T:0.47
Consensus pattern (6 bp):
TATGTA
Found at i:116248 original size:15 final size:15
Alignment explanation
Indices: 116224--116285 Score: 56
Period size: 15 Copynumber: 4.1 Consensus size: 15
116214 CCTGGAAAAC
116224 AAATAATAA-AATAA
1 AAATAATAATAATAA
*
116238 AAATAAATAAATAAGAA
1 AAAT-AAT-AATAATAA
*
116255 TAA-AATAAGTAATAA
1 AAATAATAA-TAATAA
*
116270 AGATAATAATAATAA
1 AAATAATAATAATAA
116285 A
1 A
116286 TAAAAGTATT
Statistics
Matches: 38, Mismatches: 5, Indels: 9
0.73 0.10 0.17
Matches are distributed among these distances:
14 6 0.16
15 19 0.50
16 7 0.18
17 6 0.16
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.23
Consensus pattern (15 bp):
AAATAATAATAATAA
Found at i:116259 original size:19 final size:17
Alignment explanation
Indices: 116219--116290 Score: 65
Period size: 19 Copynumber: 3.9 Consensus size: 17
116209 TTGGACCTGG
*
116219 AAAACAAATAATAAAAT
1 AAAATAAATAATAAAAT
116236 AAAAATAAATAAATAAGAAT
1 -AAAATAAAT-AATAA-AAT
*
116256 AAAATAAGTAATAAAGAT
1 AAAATAAATAATAAA-AT
116274 AATAAT-AATAAATAAAA
1 AA-AATAAAT-AATAAAA
116291 GTATTTTTTT
Statistics
Matches: 46, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
17 1 0.02
18 20 0.43
19 22 0.48
20 3 0.07
ACGTcount: A:0.74, C:0.01, G:0.04, T:0.21
Consensus pattern (17 bp):
AAAATAAATAATAAAAT
Found at i:116377 original size:43 final size:40
Alignment explanation
Indices: 116311--116389 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 40
116301 TAACTATATA
* *
116311 ATATAATTTTTAAAAAGTTTTTTTTTTAAAAACTATATATTAT
1 ATATAATTTTCAAAAAG--TGTTTTTT-AAAACTATATATTAT
116354 ATATAACTTTTCAAAAA-TGTTTTTTAAAACTATATA
1 ATATAA-TTTTCAAAAAGTGTTTTTTAAAACTATATA
116390 ATTTTCAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
40 11 0.33
41 7 0.21
43 6 0.18
44 9 0.27
ACGTcount: A:0.43, C:0.05, G:0.03, T:0.49
Consensus pattern (40 bp):
ATATAATTTTCAAAAAGTGTTTTTTAAAACTATATATTAT
Found at i:116423 original size:14 final size:14
Alignment explanation
Indices: 116381--116425 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
116371 TGTTTTTTAA
116381 AACTATATAATTTT
1 AACTATATAATTTT
* **
116395 CAAATATATTTTTTT
1 -AACTATATAATTTT
116410 AACTATATAATTTT
1 AACTATATAATTTT
116424 AA
1 AA
116426 AAAATGTTTT
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
14 13 0.54
15 11 0.46
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.51
Consensus pattern (14 bp):
AACTATATAATTTT
Found at i:116478 original size:30 final size:30
Alignment explanation
Indices: 116353--116471 Score: 159
Period size: 30 Copynumber: 4.0 Consensus size: 30
116343 CTATATATTA
*
116353 TATATAACTTTTCAAAAATGTTTTTTAAAAC
1 TATATAA-TTTTCAAAAATGTTTTTAAAAAC
* * **
116384 TATATAATTTTCAAATATATTTTT-TTAAC
1 TATATAATTTTCAAAAATGTTTTTAAAAAC
*
116413 TATATAATTTTAAAAAATGTTTTTAAAAAC
1 TATATAATTTTCAAAAATGTTTTTAAAAAC
*
116443 TATATAATTTTCAAAAATGTCTTTAAAAA
1 TATATAATTTTCAAAAATGTTTTTAAAAA
116472 TCATATATTA
Statistics
Matches: 76, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
29 24 0.32
30 45 0.59
31 7 0.09
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.46
Consensus pattern (30 bp):
TATATAATTTTCAAAAATGTTTTTAAAAAC
Found at i:116678 original size:37 final size:36
Alignment explanation
Indices: 116443--116709 Score: 272
Period size: 37 Copynumber: 7.2 Consensus size: 36
116433 TTTTAAAAAC
116443 TATATAATTTTCAAAAATGTCTTTAAAAA-TCATATAT
1 TATATAATTTTCAAAAATGT-TTTAAAAACT-ATATAT
116480 TATATAAGTTTTCAAAAATGTTTTCAAAAACTATATAT
1 TATATAA-TTTTCAAAAATGTTTT-AAAAACTATATAT
* *
116518 TATATAAGTTTTAAAAAAAATGTTTTCAAAAACTATATTT
1 TATATAA-TTTT--CAAAAATGTTTT-AAAAACTATATAT
* *
116558 TATGTAAGTTTTC-AAAATGATTTTAAAAATTATATAT
1 TATATAA-TTTTCAAAAATG-TTTTAAAAACTATATAT
*
116595 TATA-AATTTTCCTAAAATGTTTTAAAAACTATATAT
1 TATATAATTTT-CAAAAATGTTTTAAAAACTATATAT
* * * *
116631 TATACAATTTTCAAAAGTATTTTAAAAACCATATAT
1 TATATAATTTTCAAAAATGTTTTAAAAACTATATAT
* * * *
116667 TATATTCATTTTC-AAAAGGTTTTTAGATACTATATAT
1 TATA-TAATTTTCAAAAATG-TTTTAAAAACTATATAT
116704 TATATA
1 TATATA
116710 TGTATTTTCA
Statistics
Matches: 198, Mismatches: 21, Indels: 23
0.82 0.09 0.10
Matches are distributed among these distances:
35 4 0.02
36 52 0.26
37 66 0.33
38 40 0.20
39 1 0.01
40 35 0.18
ACGTcount: A:0.44, C:0.07, G:0.05, T:0.44
Consensus pattern (36 bp):
TATATAATTTTCAAAAATGTTTTAAAAACTATATAT
Found at i:119447 original size:21 final size:22
Alignment explanation
Indices: 119423--119474 Score: 54
Period size: 21 Copynumber: 2.4 Consensus size: 22
119413 TATTGCCGTG
*
119423 TAATTTCATATTTAA-TATTTT
1 TAATTTCATAATTAATTATTTT
*
119444 TAATAGT-ATAATTAATTATTTT
1 TAAT-TTCATAATTAATTATTTT
*
119466 AAATTTCAT
1 TAATTTCAT
119475 GTAATTTAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
21 12 0.50
22 12 0.50
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (22 bp):
TAATTTCATAATTAATTATTTT
Found at i:128085 original size:31 final size:31
Alignment explanation
Indices: 128049--128107 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
128039 AACTTAAAAG
* *
128049 AGTTTTGCAATACTGAGATTTAAATAATTTT
1 AGTTTTACAATACTGAAATTTAAATAATTTT
128080 AGTTTTACAATACTGAAATTTAAATAAT
1 AGTTTTACAATACTGAAATTTAAATAAT
128108 CGATACAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (31 bp):
AGTTTTACAATACTGAAATTTAAATAATTTT
Found at i:128147 original size:22 final size:22
Alignment explanation
Indices: 128114--128165 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
128104 TAATCGATAC
128114 AAATACAA-TAATAAAT-TATTTA
1 AAATA-AATTAATAAATAT-TTTA
**
128136 AAATAAATTAATCCATATTTTA
1 AAATAAATTAATAAATATTTTA
128158 AAATAAAT
1 AAATAAAT
128166 CAATCCATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 2 0.08
22 23 0.88
23 1 0.04
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.37
Consensus pattern (22 bp):
AAATAAATTAATAAATATTTTA
Found at i:128170 original size:22 final size:22
Alignment explanation
Indices: 128132--128176 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
128122 TAATAAATTA
*
128132 TTTAAAATAAATTAATCCATAT
1 TTTAAAATAAATCAATCCATAT
128154 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
128176 T
1 T
128177 AATAAATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.49, C:0.11, G:0.00, T:0.40
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:128183 original size:22 final size:22
Alignment explanation
Indices: 128130--128182 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
128120 AATAATAAAT
*
128130 TATT-TAAAATAAATTAATCCA
1 TATTATAAAATAAATCAATCCA
*
128151 TATTTTAAAATAAATCAATCCA
1 TATTATAAAATAAATCAATCCA
128173 TATTAATAAA
1 TATT-ATAAA
128183 TTATTTAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 4 0.14
22 20 0.71
23 4 0.14
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (22 bp):
TATTATAAAATAAATCAATCCA
Found at i:128186 original size:54 final size:54
Alignment explanation
Indices: 128122--129021 Score: 446
Period size: 54 Copynumber: 16.8 Consensus size: 54
128112 ACAAATACAA
* *
128122 TAATAAATTATTTAAAATAAATTAATCCATATTTTAAAATAAATCAATCCATAT
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* *** * * *
128176 TAATAAATTATTTAAAATAAATCAATTCATACAACTACAAT-AATAAAT-CAAAC
1 TAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAAATCAATCCATAC
* * *
128229 T-AT--A-T-TTAAAAATAAATCAATCTATGCTAAAAAATTATTTAAAATAAATCAATCGATAC
1 TAATAAATTATTTAAAATAAATCAATC----C----ATA-T-TTTAAAATAAATCAATCCATAC
* *
128288 -AACTACA--A--T--AATAAATCAATCCATATTTTAAAATAAATCAATCTATAC
1 TAA-TAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
*
128336 AAATAAATTATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAAT-C---C--AT--A-T-TTTAAAATAAATCAATCCATAC
** * ** * *
128400 TAATAAATTATTTAAAATAAATCAATTTATACAACTACAATAATAATTCAATCCATATTT
1 TAATAAATTATTTAAAATAAATCAATCCAT---ATTTTAA-AATAAATCAATCCATA--C
* * * * * *
128460 TAAAATAAATCAATTCATACT-AATAAAT---TA-TTTAAAATAAATCAATCTATAC
1 T--AATAAAT-TATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* *
128512 -AACCACA--A--T--AATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
1 TAA-TAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* ** * ** * **
128560 AAATAAATTATTTAAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAAT-C
1 TAATAAATTATTT-AAAATAAATCAATCCATA-TTTTAAAATAAAT-CAATCCATAC
** *
128616 -AATCCA-TATTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATT
1 TAATAAATTA-TTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATA-C
* * * *** ** * *
128670 TAA-AAATAAATCAATCCAAA-CTAATAAAT-TATTTAAAATAAATCAATCTATATTT
1 TAATAAATTATTTAAAATAAATC-AATCCATAT-TTTAAAATAAATCAATCCATA--C
* * * * *
128725 TAAAATAAATCAATCTATACT-AATAAAT---TA-TTTAAAATAAATCAATCCATAC
1 T--AATAAAT-TATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* *
128777 -AACTACA--A--T--AATAAATCAATCCATATTTTAAAATAAATCAATACATAC
1 TAA-TAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
128825 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
128879 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* * *
128933 TAATAAATTATTTAAAATAAATCAATCCATA--CT--AATAAAT-TAT--TTA-
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* *
128979 AAATAAATTATTTTAAAATAAATCAATCCATATTTTATAATAA
1 TAATAAATTA-TTTAAAATAAATCAATCCATATTTTAAAATAA
129022 TTTATTTTAA
Statistics
Matches: 655, Mismatches: 102, Indels: 181
0.70 0.11 0.19
Matches are distributed among these distances:
43 4 0.01
44 12 0.02
45 1 0.00
46 9 0.01
47 29 0.04
48 86 0.13
49 15 0.02
50 18 0.03
51 5 0.01
52 12 0.02
53 14 0.02
54 256 0.39
55 39 0.06
56 12 0.02
57 15 0.02
58 45 0.07
59 11 0.02
60 4 0.01
62 15 0.02
63 7 0.01
64 46 0.07
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34
Consensus pattern (54 bp):
TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
Found at i:128234 original size:80 final size:79
Alignment explanation
Indices: 128137--128855 Score: 467
Period size: 80 Copynumber: 8.9 Consensus size: 79
128127 AATTATTTAA
* *
128137 AATAAATTAATCCATATTTTAAAATAAATCAATCCATATTAATAAATTATTTAAAATAAATCAAT
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
*
128202 TCATACAACTACAAT
66 CCATA-AACTACAAT
* * * * * *
128217 AATAAATCAAACTATATTTAAAAATAAATCAATCTATGCTAAAAAATTATTTAAAATAAATCAAT
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
*
128282 CGATACAACTACAAT
66 CCATA-AACTACAAT
* *
128297 AATAAATCAATCCATATTTTAAAATAAATCAATCTATACAAATAAATTATTTAAAATAAATCAAT
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
*
128362 CCATACTAA-TAAATTATTT
66 CCATA--AACTACA--A--T
** * * * * *
128381 AAAATAAATCAATCCATACTAATAAATTATTTAAAATAAAT-CA-ATTTATACAACTA--CAATA
1 --AATAAATCAATCCATA-TTTTAAA--A--T-AAATCAATCCATACTAATA-AATTATTTAA-A
* *** *
128442 ATAATTCAATCCATATTTTAAAAT
56 ATAAATCAATCCATAAACTACAAT
* * * * *
128466 AAATCAATTC-ATACTAATAAATTATTTAAAATAAATCAATCTATAC-AACCACA--A--T--AA
1 -AAT-AAATCAAT-C-CAT--A-T-TTTAAAATAAATCAATCCATACTAA-TAAATTATTTAAAA
*** *
128523 TAAATCAATCCATATTTTAAAAT
57 TAAATCAATCCATAAACTACAAT
** *
128546 AAATCAATCCATACAAATAAATTATTTAAAAATAAATCAATCCATACTAATAAATTATTTAAAAT
1 -AAT-AA---AT-C-AATCCA-TATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAAT
* **
128611 AAATCAATCCAT--ATTTTAA-
58 AAATCAATCCATAAACTACAAT
* * *
128630 AATAAATCAATCCATATTTTAAAATAAATCAATCCATA-T-TTAAA--A-AT-AAATCAATCCAA
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAAT-CAA
* * * *
128689 ACTAATAAATTATTTAA-
65 TC-CATAAACTA--CAAT
* *
128706 AATAAATCAATCTATATTTTAAAATAAATCAATCTATACTAATAAATTATTTAAAATAAATCAAT
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
128771 CCATACAACTACAAT
66 CCATA-AACTACAAT
*
128786 AATAAATCAATCCATATTTTAAAATAAATCAATACATACTAATAAATTATTTAAAATAAATCAAT
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
128851 CCATA
66 CCATA
128856 TTTTAAAATA
Statistics
Matches: 512, Mismatches: 74, Indels: 106
0.74 0.11 0.15
Matches are distributed among these distances:
70 7 0.01
71 5 0.01
72 3 0.01
74 7 0.01
75 1 0.00
76 62 0.12
77 5 0.01
78 5 0.01
79 4 0.01
80 238 0.46
81 33 0.06
82 13 0.03
83 7 0.01
84 17 0.03
85 16 0.03
86 22 0.04
87 22 0.04
88 2 0.00
89 11 0.02
90 19 0.04
91 6 0.01
92 7 0.01
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.33
Consensus pattern (79 bp):
AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
CCATAAACTACAAT
Found at i:128261 original size:22 final size:22
Alignment explanation
Indices: 128217--128263 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
128207 CAACTACAAT
* *
128217 AATAAATCAAACTATATTTAAA
1 AATAAATCAAACTATACTAAAA
* *
128239 AATAAATCAATCTATGCTAAAA
1 AATAAATCAAACTATACTAAAA
128261 AAT
1 AAT
128264 TATTTAAAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.57, C:0.11, G:0.02, T:0.30
Consensus pattern (22 bp):
AATAAATCAAACTATACTAAAA
Found at i:128353 original size:32 final size:32
Alignment explanation
Indices: 128314--128986 Score: 347
Period size: 32 Copynumber: 24.4 Consensus size: 32
128304 CAATCCATAT
*
128314 TTTAAAATAAATCAATCTATACAAATAAATTA
1 TTTAAAATAAATCAATCCATACAAATAAATTA
*
128346 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACAAATAAATTA
*
128378 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACAAATAAATTA
** * *
128410 TTTAAAATAAATCAATTTATACAACTACA--A
1 TTTAAAATAAATCAATCCATACAAATAAATTA
*
128440 --T--AATAATTCAATCCAT----AT------
1 TTTAAAATAAATCAATCCATACAAATAAATTA
* *
128458 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACAAATAAATTA
* ** *
128490 TTTAAAATAAATCAATCTATACAACCACA--A
1 TTTAAAATAAATCAATCCATACAAATAAATTA
128520 --T--AATAAATCAATCCAT----AT------
1 TTTAAAATAAATCAATCCATACAAATAAATTA
128538 TTTAAAATAAATCAATCCATACAAATAAATTA
1 TTTAAAATAAATCAATCCATACAAATAAATTA
*
128570 TTTAAAAATAAATCAATCCATACTAATAAATTA
1 TTT-AAAATAAATCAATCCATACAAATAAATTA
128603 TTTAAAATAAATCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACAAATAAATTA
128625 TTTAAAATAAATCAATCCATA---------T-
1 TTTAAAATAAATCAATCCATACAAATAAATTA
128647 TTTAAAATAAATCAATCCATA----T---TTA
1 TTTAAAATAAATCAATCCATACAAATAAATTA
* *
128672 ---AAAATAAATCAATCCAAACTAATAAATTA
1 TTTAAAATAAATCAATCCATACAAATAAATTA
128701 TTTAAAATAAATCAAT-C-T----AT--A-T-
1 TTTAAAATAAATCAATCCATACAAATAAATTA
* *
128723 TTTAAAATAAATCAATCTATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACAAATAAATTA
* *
128755 TTTAAAATAAATCAATCCATACAACTACA--A
1 TTTAAAATAAATCAATCCATACAAATAAATTA
128785 --T--AATAAATCAATCCAT----AT------
1 TTTAAAATAAATCAATCCATACAAATAAATTA
* *
128803 TTTAAAATAAATCAATACATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACAAATAAATTA
128835 TTTAAAATAAATCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACAAATAAATTA
*
128857 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACAAATAAATTA
128889 TTTAAAATAAATCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACAAATAAATTA
*
128911 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACAAATAAATTA
*
128943 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACAAATAAATTA
128975 TTTAAAATAAAT
1 TTTAAAATAAAT
128987 TATTTTAAAA
Statistics
Matches: 519, Mismatches: 32, Indels: 180
0.71 0.04 0.25
Matches are distributed among these distances:
20 3 0.01
22 147 0.28
23 7 0.01
24 6 0.01
26 58 0.11
28 12 0.02
29 3 0.01
30 6 0.01
31 7 0.01
32 239 0.46
33 31 0.06
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.34
Consensus pattern (32 bp):
TTTAAAATAAATCAATCCATACAAATAAATTA
Found at i:128413 original size:144 final size:145
Alignment explanation
Indices: 128231--128511 Score: 467
Period size: 144 Copynumber: 1.9 Consensus size: 145
128221 AATCAAACTA
* *
128231 TATTTAAAAATAAATCAATCTATGCTAAAAAATTATTTAAAATAAATCAATCGATACAACTACAA
1 TATTTAAAAATAAATCAATCCATACTAAAAAATTATTTAAAATAAATCAATCGATACAACTACAA
128296 TAATAAATCAATCCATATTTTAAAATAAATCAA-TCTATACAAATAAATTATTTAAAATAAATCA
66 TAATAAATCAATCCATATTTTAAAATAAATCAATTC-ATACAAATAAATTATTTAAAATAAATCA
128360 ATCCATACTAATAAAT
130 ATCCATACTAATAAAT
* **
128376 TATTT-AAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATTTATACAACTACAA
1 TATTTAAAAATAAATCAATCCATACTAAAAAATTATTTAAAATAAATCAATCGATACAACTACAA
* *
128440 TAATAATTCAATCCATATTTTAAAATAAATCAATTCATACTAATAAATTATTTAAAATAAATCAA
66 TAATAAATCAATCCATATTTTAAAATAAATCAATTCATACAAATAAATTATTTAAAATAAATCAA
*
128505 TCTATAC
131 TCCATAC
128512 AACCACAATA
Statistics
Matches: 127, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
144 120 0.94
145 7 0.06
ACGTcount: A:0.53, C:0.12, G:0.01, T:0.34
Consensus pattern (145 bp):
TATTTAAAAATAAATCAATCCATACTAAAAAATTATTTAAAATAAATCAATCGATACAACTACAA
TAATAAATCAATCCATATTTTAAAATAAATCAATTCATACAAATAAATTATTTAAAATAAATCAA
TCCATACTAATAAAT
Found at i:128503 original size:224 final size:225
Alignment explanation
Indices: 128154--128623 Score: 818
Period size: 224 Copynumber: 2.1 Consensus size: 225
128144 TAATCCATAT
*
128154 TTTAAAATAAATCAATCCATATTAATAAATTATTTAAAATAAATCAATTCATACAACTACAATAA
1 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATTCATACAACTACAATAA
* *
128219 TAAATCAAACTATATTTAAAAATAAATCAATCTATGCTAAAAAATTATTTAAAATAAATCAATCG
66 TAAATCAAACCATATTTAAAAATAAATCAATCTATACTAAAAAATTATTTAAAATAAATCAATCG
* *
128284 ATACAACTACAATAATAAATCAATCCATATTTTAAAATAAATCAATCTATACAAATAAATTATTT
131 ATACAACCACAATAATAAATCAATCCATATTTTAAAATAAATCAATCCATACAAATAAATTATTT
128349 -AAAATAAATCAATCCATACTAATAAATTA
196 AAAAATAAATCAATCCATACTAATAAATTA
*
128378 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATTTATACAACTACAATAA
1 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATTCATACAACTACAATAA
* * * *
128443 TAATTCAATCCATATTTTAAAATAAATCAAT-TCATACTAATAAATTATTTAAAATAAATCAATC
66 TAAATCAAACCATATTTAAAAATAAATCAATCT-ATACTAAAAAATTATTTAAAATAAATCAATC
*
128507 TATACAACCACAATAATAAATCAATCCATATTTTAAAATAAATCAATCCATACAAATAAATTATT
130 GATACAACCACAATAATAAATCAATCCATATTTTAAAATAAATCAATCCATACAAATAAATTATT
128572 TAAAAATAAATCAATCCATACTAATAAATTA
195 TAAAAATAAATCAATCCATACTAATAAATTA
128603 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
128624 TTTTAAAATA
Statistics
Matches: 233, Mismatches: 11, Indels: 3
0.94 0.04 0.01
Matches are distributed among these distances:
223 1 0.00
224 182 0.78
225 50 0.21
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.33
Consensus pattern (225 bp):
TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATTCATACAACTACAATAA
TAAATCAAACCATATTTAAAAATAAATCAATCTATACTAAAAAATTATTTAAAATAAATCAATCG
ATACAACCACAATAATAAATCAATCCATATTTTAAAATAAATCAATCCATACAAATAAATTATTT
AAAAATAAATCAATCCATACTAATAAATTA
Found at i:128563 original size:18 final size:18
Alignment explanation
Indices: 128542--128600 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
128532 CCATATTTTA
128542 AAATAAATCAATCCATAC
1 AAATAAATCAATCCATAC
* * *
128560 AAATAAAT-TAT--TTAA
1 AAATAAATCAATCCATAC
128575 AAATAAATCAATCCATAC
1 AAATAAATCAATCCATAC
*
128593 TAATAAAT
1 AAATAAAT
128601 TATTTAAAAT
Statistics
Matches: 31, Mismatches: 7, Indels: 6
0.70 0.16 0.14
Matches are distributed among these distances:
15 10 0.32
16 2 0.06
17 2 0.06
18 17 0.55
ACGTcount: A:0.58, C:0.14, G:0.00, T:0.29
Consensus pattern (18 bp):
AAATAAATCAATCCATAC
Found at i:128654 original size:76 final size:76
Alignment explanation
Indices: 128568--128877 Score: 392
Period size: 76 Copynumber: 4.0 Consensus size: 76
128558 ACAAATAAAT
*
128568 TATTTAAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAAT
1 TATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAAT
128633 AAATCAATCCA
66 AAATCAATCCA
* * * * *** **
128644 TATTTTAAAATAAATCAATCCATATTTAA-AAATAAATCAATCCAAA-CTAATAAAT-TATTTAA
1 TATTTTAAAATAAATCAATCCATA-CTAATAAATTATTTAAAATAAATC-AATCCATAT-TTTAA
*
128706 AATAAATCAATCTA
63 AATAAATCAATCCA
* * **
128720 TATTTTAAAATAAATCAATCTATACTAATAAATTATTTAAAATAAATCAATCCATACAACTACAA
1 TATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCAT---ATTTTAA
128785 TAATAAATCAATCCA
63 -AATAAATCAATCCA
*
128800 TATTTTAAAATAAATCAATACATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAAT
1 TATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAAT
128865 AAATCAATCCA
66 AAATCAATCCA
128876 TA
1 TA
128878 CTAATAAATT
Statistics
Matches: 194, Mismatches: 30, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
75 5 0.03
76 112 0.58
77 8 0.04
79 3 0.02
80 66 0.34
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.34
Consensus pattern (76 bp):
TATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAAT
AAATCAATCCA
Found at i:128698 original size:22 final size:22
Alignment explanation
Indices: 128605--128697 Score: 89
Period size: 22 Copynumber: 4.2 Consensus size: 22
128595 ATAAATTATT
* **
128605 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCAAATAA
* **
128627 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCAAATAA
* *
128649 TAAAATAAATCAATCCATAT-T
1 TAAAATAAATCAATCCAAATAA
128670 TAAAAATAAATCAATCCAAACTAA
1 T-AAAATAAATCAATCCAAA-TAA
128694 TAAA
1 TAAA
128698 TTATTTAAAA
Statistics
Matches: 66, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
21 2 0.03
22 59 0.89
23 4 0.06
24 1 0.02
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCAAATAA
Found at i:128743 original size:22 final size:22
Alignment explanation
Indices: 128603--128687 Score: 161
Period size: 22 Copynumber: 3.9 Consensus size: 22
128593 TAATAAATTA
128603 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
128625 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
128647 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
*
128669 TTAAAAATAAATCAATCCA
1 TTTAAAATAAATCAATCCA
128688 AACTAATAAA
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 62 1.00
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:128752 original size:22 final size:22
Alignment explanation
Indices: 128703--128751 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
128693 ATAAATTATT
**
128703 TAAAATAAATCAATCTATATTT
1 TAAAATAAATCAATCTATATAA
128725 TAAAATAAATCAATCTATACTAA
1 TAAAATAAATCAATCTATA-TAA
128748 TAAA
1 TAAA
128752 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.35
Consensus pattern (22 bp):
TAAAATAAATCAATCTATATAA
Found at i:128832 original size:22 final size:22
Alignment explanation
Indices: 128760--128832 Score: 53
Period size: 22 Copynumber: 3.3 Consensus size: 22
128750 AATTATTTAA
* *
128760 AATAAATCAATCCATACA-ACT
1 AATAAATAAATCAATACATACT
*
128781 ACA-ATAATAAATCAATCCATA-T
1 A-ATA-AATAAATCAATACATACT
**
128803 TTTAAAATAAATCAATACATACT
1 AAT-AAATAAATCAATACATACT
128826 AATAAAT
1 AATAAAT
128833 TATTTAAAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 11
0.67 0.14 0.19
Matches are distributed among these distances:
21 2 0.05
22 32 0.84
23 4 0.11
ACGTcount: A:0.55, C:0.16, G:0.00, T:0.29
Consensus pattern (22 bp):
AATAAATAAATCAATACATACT
Found at i:128861 original size:22 final size:22
Alignment explanation
Indices: 128835--128877 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
128825 TAATAAATTA
128835 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
128857 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
128878 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:128886 original size:22 final size:22
Alignment explanation
Indices: 128837--128885 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
128827 ATAAATTATT
**
128837 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
128859 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
128882 TAAA
1 TAAA
128886 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:128915 original size:22 final size:22
Alignment explanation
Indices: 128889--128931 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
128879 TAATAAATTA
128889 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
128911 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
128932 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:128940 original size:22 final size:22
Alignment explanation
Indices: 128891--128939 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
128881 ATAAATTATT
**
128891 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
128913 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
128936 TAAA
1 TAAA
128940 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:128995 original size:15 final size:15
Alignment explanation
Indices: 128966--129113 Score: 181
Period size: 15 Copynumber: 9.5 Consensus size: 15
128956 AATCCATACT
128966 AATAAATTA-TTTAA
1 AATAAATTATTTTAA
128980 AATAAATTATTTTAA
1 AATAAATTATTTTAA
*
128995 AATAAATCAATCCATATTTTAT
1 AAT--A--AAT---TATTTTAA
*
129017 AATAATTTATTTTAA
1 AATAAATTATTTTAA
*
129032 AATAAATTATTTTAT
1 AATAAATTATTTTAA
*
129047 AATAAATTATTTTAT
1 AATAAATTATTTTAA
*
129062 AATAAATTATTTTAT
1 AATAAATTATTTTAA
129077 AATAAATTATTTTAA
1 AATAAATTATTTTAA
129092 AATAAATTATTTTAA
1 AATAAATTATTTTAA
129107 AATAAAT
1 AATAAAT
129114 AACCTTATTA
Statistics
Matches: 120, Mismatches: 6, Indels: 15
0.85 0.04 0.11
Matches are distributed among these distances:
14 9 0.08
15 94 0.78
17 1 0.01
18 2 0.02
19 3 0.03
20 1 0.01
22 10 0.08
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (15 bp):
AATAAATTATTTTAA
Found at i:129060 original size:45 final size:45
Alignment explanation
Indices: 128934--129113 Score: 193
Period size: 45 Copynumber: 3.8 Consensus size: 45
128924 AATCCATACT
* **
128934 AATAAATTA-TTTAAAATAAATCAATCCATACTAATAAATTA-TTTAA
1 AATAAATTATTTTAAAATAAAT-TAT-TTTA-TAATAAATTATTTTAA
*
128980 AATAAATTATTTTAAAATAAATCAATCCATATTTTATAATAATTTATTTTAA
1 AATAAATTATTTTAAAAT--A--AAT---TATTTTATAATAAATTATTTTAA
* *
129032 AATAAATTATTTTATAATAAATTATTTTATAATAAATTATTTTAT
1 AATAAATTATTTTAAAATAAATTATTTTATAATAAATTATTTTAA
*
129077 AATAAATTATTTTAAAATAAATTATTTTAAAATAAAT
1 AATAAATTATTTTAAAATAAATTATTTTATAATAAAT
129114 AACCTTATTA
Statistics
Matches: 116, Mismatches: 10, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
45 56 0.48
46 9 0.08
47 8 0.07
48 3 0.03
49 1 0.01
50 1 0.01
51 12 0.10
52 24 0.21
53 2 0.02
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (45 bp):
AATAAATTATTTTAAAATAAATTATTTTATAATAAATTATTTTAA
Found at i:129545 original size:74 final size:74
Alignment explanation
Indices: 129421--129570 Score: 282
Period size: 74 Copynumber: 2.0 Consensus size: 74
129411 AAAAGATAGT
*
129421 TTTATATTATTTATATGGGTCCAATTATTTCTAATATATATTATTTAAGGTTTAATTTTCTTTAA
1 TTTATATTATTTATATGGGTCCAATTATTTCTAATATATATTATTAAAGGTTTAATTTTCTTTAA
129486 TATTTATTA
66 TATTTATTA
*
129495 TTTATATTATTTATATGGGTCCAATTATTTCTAATATTTATTATTAAAGGTTTAATTTTCTTTAA
1 TTTATATTATTTATATGGGTCCAATTATTTCTAATATATATTATTAAAGGTTTAATTTTCTTTAA
129560 TATTTATTA
66 TATTTATTA
129569 TT
1 TT
129571 AAAGGTTGAA
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.31, C:0.05, G:0.07, T:0.57
Consensus pattern (74 bp):
TTTATATTATTTATATGGGTCCAATTATTTCTAATATATATTATTAAAGGTTTAATTTTCTTTAA
TATTTATTA
Found at i:129561 original size:31 final size:31
Alignment explanation
Indices: 129526--129586 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
129516 CAATTATTTC
*
129526 TAATATTTATTATTAAAGGTTTAATTTTCTT
1 TAATATTTATTATTAAAGGTTGAATTTTCTT
129557 TAATATTTATTATTAAAGGTTGAATTTTCT
1 TAATATTTATTATTAAAGGTTGAATTTTCT
129587 AAAAGGAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.56
Consensus pattern (31 bp):
TAATATTTATTATTAAAGGTTGAATTTTCTT
Found at i:129564 original size:40 final size:39
Alignment explanation
Indices: 129446--129564 Score: 92
Period size: 36 Copynumber: 3.1 Consensus size: 39
129436 TGGGTCCAAT
*
129446 TATTTCTAATATATATTATTTAAGGTTTAATTTTCTTTAA
1 TATTTCTAATATTTATTA-TTAAGGTTTAATTTTCTTTAA
* ** *
129486 TA-TT-TATTATTTA-TATT-A--TTTATATGGGTC--CAA
1 TATTTCTAATATTTATTATTAAGGTTTA-AT-TTTCTTTAA
129519 TTATTTCTAATATTTATTATTAAAGGTTTAATTTTCTTTAA
1 -TATTTCTAATATTTATTATT-AAGGTTTAATTTTCTTTAA
129560 TATTT
1 TATTT
129565 ATTATTAAAG
Statistics
Matches: 58, Mismatches: 9, Indels: 24
0.64 0.10 0.26
Matches are distributed among these distances:
33 6 0.10
34 4 0.07
35 5 0.09
36 10 0.17
37 6 0.10
38 7 0.12
39 5 0.09
40 9 0.16
41 6 0.10
ACGTcount: A:0.31, C:0.05, G:0.06, T:0.58
Consensus pattern (39 bp):
TATTTCTAATATTTATTATTAAGGTTTAATTTTCTTTAA
Found at i:146032 original size:24 final size:25
Alignment explanation
Indices: 146002--146052 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
145992 AATCATCACC
**
146002 AAAAAGAACATGCAACTTACCA-AT
1 AAAAAGAACACACAACTTACCATAT
*
146026 AAAAAGAATACACAACTTACCATAT
1 AAAAAGAACACACAACTTACCATAT
146051 AA
1 AA
146053 GCTTCAAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.57, C:0.20, G:0.06, T:0.18
Consensus pattern (25 bp):
AAAAAGAACACACAACTTACCATAT
Found at i:154256 original size:31 final size:30
Alignment explanation
Indices: 154218--154276 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
154208 TAATATACGG
* *
154218 CTAAAAAAAACGATACTGGTTTTGTTATTGA
1 CTAAAAAAAA-GATACCGATTTTGTTATTGA
*
154249 CTAAAAAAAAGGTACCGATTTTGTTATT
1 CTAAAAAAAAGATACCGATTTTGTTATT
154277 ATTGTGCATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (30 bp):
CTAAAAAAAAGATACCGATTTTGTTATTGA
Found at i:154852 original size:25 final size:26
Alignment explanation
Indices: 154803--154852 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
154793 TTTATAAATA
* **
154803 AAAAATTATGATTATTATATTTTATT
1 AAAAATTAAGATTATTATAAATTATT
154829 AAAAA-TAAGATTATTATAAATTAT
1 AAAAATTAAGATTATTATAAATTAT
154853 ATTTATTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (26 bp):
AAAAATTAAGATTATTATAAATTATT
Found at i:157951 original size:12 final size:12
Alignment explanation
Indices: 157930--157955 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
157920 TTGAGGAATA
157930 GGAGGAGGATTT
1 GGAGGAGGATTT
157942 GGAGGAGGATTT
1 GGAGGAGGATTT
157954 GG
1 GG
157956 TTGACGACTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.54, T:0.23
Consensus pattern (12 bp):
GGAGGAGGATTT
Found at i:165043 original size:24 final size:23
Alignment explanation
Indices: 164995--165044 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 23
164985 AATGTTTATT
*
164995 TTAAAAATAATATTATTATTTTG
1 TTAAAAATAATATTATTATTGTG
165018 TTAATAAATAATATTATT-TTAGTG
1 TTAA-AAATAATATTATTATT-GTG
165042 TTA
1 TTA
165045 TCCTTGGTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 6 0.25
24 18 0.75
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (23 bp):
TTAAAAATAATATTATTATTGTG
Found at i:165592 original size:23 final size:23
Alignment explanation
Indices: 165566--165616 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
165556 TAAGTAATTA
**
165566 ACCTATTTTATTATATAAGAGCT
1 ACCTATTACATTATATAAGAGCT
* *
165589 ACCTATTACGTTATATAAGCGCT
1 ACCTATTACATTATATAAGAGCT
165612 ACCTA
1 ACCTA
165617 ATATGTTATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (23 bp):
ACCTATTACATTATATAAGAGCT
Found at i:165624 original size:23 final size:23
Alignment explanation
Indices: 165576--165625 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
165566 ACCTATTTTA
*
165576 TTATATAAGAGCTACCTATTACG
1 TTATATAAGAGCTACCTAATACG
* *
165599 TTATATAAGCGCTACCTAATATG
1 TTATATAAGAGCTACCTAATACG
165622 TTAT
1 TTAT
165626 TGTGTTTGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (23 bp):
TTATATAAGAGCTACCTAATACG
Found at i:165704 original size:87 final size:87
Alignment explanation
Indices: 165558--165790 Score: 358
Period size: 87 Copynumber: 2.7 Consensus size: 87
165548 AAACAAATTA
*
165558 AGTAATTAACCTATTTTATTATATAAGAGCTACCTATTACGTTATATAAGCGCTACCTAATATGT
1 AGTAATTAACCTATTTTATTATATAAGAGCTACCTATTACATTATATAAGCGCTACCTAATATGT
*
165623 TATTGTGTTTGATAATGTTTCC
66 TATTGTGCTTGATAATGTTTCC
* * * * *
165645 AGTAATTAACATATTTTATTATATAAGTGTTACCTATTACATTATATAAGTGGTACCTAATATGT
1 AGTAATTAACCTATTTTATTATATAAGAGCTACCTATTACATTATATAAGCGCTACCTAATATGT
*
165710 TATTGTGCTTGATAATGTTTCT
66 TATTGTGCTTGATAATGTTTCC
* ** *
165732 AGTAATTAACCTATTTTATTATATAAGCGCTACCTATTTTATTATATAAGCGTTACCTA
1 AGTAATTAACCTATTTTATTATATAAGAGCTACCTATTACATTATATAAGCGCTACCTA
165791 TTACATTATA
Statistics
Matches: 131, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
87 131 1.00
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (87 bp):
AGTAATTAACCTATTTTATTATATAAGAGCTACCTATTACATTATATAAGCGCTACCTAATATGT
TATTGTGCTTGATAATGTTTCC
Found at i:165712 original size:23 final size:23
Alignment explanation
Indices: 165662--165706 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
165652 AACATATTTT
* *
165662 ATTATATAAGTGTTACCTATTAC
1 ATTATATAAGTGGTACCTAATAC
165685 ATTATATAAGTGGTACCTAATA
1 ATTATATAAGTGGTACCTAATA
165707 TGTTATTGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.40
Consensus pattern (23 bp):
ATTATATAAGTGGTACCTAATAC
Found at i:165770 original size:23 final size:23
Alignment explanation
Indices: 165740--165822 Score: 121
Period size: 23 Copynumber: 3.6 Consensus size: 23
165730 CTAGTAATTA
*
165740 ACCTATTTTATTATATAAGCGCT
1 ACCTATTATATTATATAAGCGCT
* *
165763 ACCTATTTTATTATATAAGCGTT
1 ACCTATTATATTATATAAGCGCT
*
165786 ACCTATTACATTATATAAGCGCT
1 ACCTATTATATTATATAAGCGCT
*
165809 ACCTAATATATTAT
1 ACCTATTATATTAT
165823 TGTGTTTAAT
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 54 1.00
ACGTcount: A:0.34, C:0.17, G:0.07, T:0.42
Consensus pattern (23 bp):
ACCTATTATATTATATAAGCGCT
Found at i:165770 original size:110 final size:110
Alignment explanation
Indices: 165656--165909 Score: 382
Period size: 110 Copynumber: 2.3 Consensus size: 110
165646 GTAATTAACA
* * * * *
165656 TATTTTATTATATAAGTGTTACCTATTACATTATATAAGTGGTACCTAATATGTTATTGTGCTTG
1 TATTTTATTATATAAGCGTTACCTATTACATTATATAAGCGCTACCTAATATATTATTGTGCTTA
* *
165721 ATAATGTTTCTAGTAATTAACCTATTTTATTATATAAGCGCTACC
66 ATAATGTTTCCAGCAATTAACCTATTTTATTATATAAGCGCTACC
*
165766 TATTTTATTATATAAGCGTTACCTATTACATTATATAAGCGCTACCTAATATATTATTGTGTTTA
1 TATTTTATTATATAAGCGTTACCTATTACATTATATAAGCGCTACCTAATATATTATTGTGCTTA
*
165831 ATAATGTTTCCAGCAATTAACCTATTTTATTATATAAGTGCTACC
66 ATAATGTTTCCAGCAATTAACCTATTTTATTATATAAGCGCTACC
** * * *
165876 TATTACATTATATAAGCGGTACCTAATATATTAT
1 TATTTTATTATATAAGCGTTACCTATTACATTAT
165910 TGTGCTTAAT
Statistics
Matches: 130, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
110 130 1.00
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.44
Consensus pattern (110 bp):
TATTTTATTATATAAGCGTTACCTATTACATTATATAAGCGCTACCTAATATATTATTGTGCTTA
ATAATGTTTCCAGCAATTAACCTATTTTATTATATAAGCGCTACC
Found at i:165854 original size:87 final size:87
Alignment explanation
Indices: 165763--166009 Score: 422
Period size: 87 Copynumber: 2.8 Consensus size: 87
165753 TATAAGCGCT
* * *
165763 ACCTATTTTATTATATAAGCGTTACCTATTACATTATATAAGCGCTACCTAATATATTATTGTGT
1 ACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAGCGGTACCTAATATATTATTGTGC
165828 TTAATAATGTTTCCAGCAATTA
66 TTAATAATGTTTCCAGCAATTA
*
165850 ACCTATTTTATTATATAAGTGCTACCTATTACATTATATAAGCGGTACCTAATATATTATTGTGC
1 ACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAGCGGTACCTAATATATTATTGTGC
*
165915 TTAATAATGTTTCCAGTAATTA
66 TTAATAATGTTTCCAGCAATTA
* *
165937 ACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAGCGGTACCTAATATGTTATTGTAC
1 ACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAGCGGTACCTAATATATTATTGTGC
*
166002 TTGATAAT
66 TTAATAAT
166010 ATTTTCGATT
Statistics
Matches: 151, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
87 151 1.00
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.42
Consensus pattern (87 bp):
ACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAGCGGTACCTAATATATTATTGTGC
TTAATAATGTTTCCAGCAATTA
Found at i:165885 original size:23 final size:23
Alignment explanation
Indices: 165850--165909 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 23
165840 CCAGCAATTA
* *
165850 ACCTATTTTATTATATAAGTGCT
1 ACCTATTATATTATATAAGCGCT
* *
165873 ACCTATTACATTATATAAGCGGT
1 ACCTATTATATTATATAAGCGCT
*
165896 ACCTAATATATTAT
1 ACCTATTATATTAT
165910 TGTGCTTAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.35, C:0.15, G:0.08, T:0.42
Consensus pattern (23 bp):
ACCTATTATATTATATAAGCGCT
Done.