Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008716.1 Hibiscus syriacus cultivar Beakdansim tig00111769_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5677467
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 20 of 24
Found at i:4787387 original size:66 final size:66
Alignment explanation
Indices: 4787281--4787519 Score: 345
Period size: 66 Copynumber: 3.6 Consensus size: 66
4787271 CTTGAGATAA
* *
4787281 TTTCTCTTGAAACAAATTTTGTCTCGCTTGAGACAGTTTCTCCTGAAACATAAACCTTTGATATT
1 TTTCTCTTGAAACAAATTTTGTCTCGCTTGAAACAGTTTCTCTTGAAACATAAACCTTTGATATT
4787346 G
66 G
* *
4787347 TTTCTCTTGAAACAAATTTTGTCTCGCTTGAAACAGTTTCTCTTGAAACATAAACCATTGAGATT
1 TTTCTCTTGAAACAAATTTTGTCTCGCTTGAAACAGTTTCTCTTGAAACATAAACCTTTGATATT
4787412 G
66 G
* * * * *
4787413 ATTCTCTTGAAACAAATTTCGTCTCACTTGAGACAGCTTCTCTTGAAACATAAACCTTTGATATT
1 TTTCTCTTGAAACAAATTTTGTCTCGCTTGAAACAGTTTCTCTTGAAACATAAACCTTTGATATT
4787478 G
66 G
* * *
4787479 TTTCTCTCGAAACAAAGTTTAGTCTTGCTTGAGAA-AGTTTC
1 TTTCTCTTGAAACAAA-TTTTGTCTCGCTTGA-AACAGTTTC
4787520 CATTGAAGCC
Statistics
Matches: 153, Mismatches: 18, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
66 135 0.88
67 17 0.11
68 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (66 bp):
TTTCTCTTGAAACAAATTTTGTCTCGCTTGAAACAGTTTCTCTTGAAACATAAACCTTTGATATT
G
Found at i:4787454 original size:36 final size:35
Alignment explanation
Indices: 4787348--4787462 Score: 98
Period size: 36 Copynumber: 3.4 Consensus size: 35
4787338 TTGATATTGT
* * *
4787348 TTCTCTTGAAACAAATTTTGTCTCGCTTGAAACAGT
1 TTCTCTTGAAACAAA-TTTGTCTCACTTGAGACAGA
* **
4787384 TTCTCTTGAAACATAA----AC-CA-TTGAGATTGA
1 TTCTCTTGAAACA-AATTTGTCTCACTTGAGACAGA
*
4787414 TTCTCTTGAAACAAATTTCGTCTCACTTGAGACAGC
1 TTCTCTTGAAACAAATTT-GTCTCACTTGAGACAGA
4787450 TTCTCTTGAAACA
1 TTCTCTTGAAACA
4787463 TAAACCTTTG
Statistics
Matches: 61, Mismatches: 10, Indels: 16
0.70 0.11 0.18
Matches are distributed among these distances:
29 2 0.03
30 19 0.31
31 1 0.02
32 1 0.02
34 1 0.02
35 2 0.03
36 33 0.54
37 2 0.03
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (35 bp):
TTCTCTTGAAACAAATTTGTCTCACTTGAGACAGA
Found at i:4787554 original size:132 final size:130
Alignment explanation
Indices: 4787272--4787576 Score: 368
Period size: 132 Copynumber: 2.3 Consensus size: 130
4787262 GTTGTCTCCC
** * *
4787272 TTGAGATAATTTCTCTTGAAACAAATTTTGTCTCGCTTGAGACAGTTTCTCCTGAAACATAAACC
1 TTGAGATTGTTTCTCTTGAAACAAA-TTTGTCTCACTTGAGACAGCTTCTCCTGAAACATAAACC
* * *
4787337 TTTGATATTGTTTCTCTTGAAACAAATTTTGTCTCGCTTGAAACAGTTTCTCTTGAAACATAAAC
65 TTTGATATTGTTTCTCTCGAAACAAATTTAGTCTCGCTTGAAACAGTTTCTCTTGAAACACAAA-
4787402 CA
129 CA
* *
4787404 TTGAGATTGATTCTCTTGAAACAAATTTCGTCTCACTTGAGACAGCTTCTCTTGAAACATAAACC
1 TTGAGATTGTTTCTCTTGAAACAAATTT-GTCTCACTTGAGACAGCTTCTCCTGAAACATAAACC
* * *
4787469 TTTGATATTGTTTCTCTCGAAACAAAGTTTAGTCTTGCTTGAGAA-AGTTTC-CATTGAAGCCCA
65 TTTGATATTGTTTCTCTCGAAACAAA-TTTAGTCTCGCTTGA-AACAGTTTCTC-TTGAAACACA
*
4787532 AA-T
127 AACA
*
4787535 TTCGA-AGTTGTTTCACTTGAAACAAA-TTGATCTCACTTGAGA
1 TT-GAGA-TTGTTTCTCTTGAAACAAATTTG-TCTCACTTGAGA
4787577 TTGTTTTCCT
Statistics
Matches: 151, Mismatches: 15, Indels: 15
0.83 0.08 0.08
Matches are distributed among these distances:
130 1 0.01
131 20 0.13
132 100 0.66
133 28 0.19
134 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (130 bp):
TTGAGATTGTTTCTCTTGAAACAAATTTGTCTCACTTGAGACAGCTTCTCCTGAAACATAAACCT
TTGATATTGTTTCTCTCGAAACAAATTTAGTCTCGCTTGAAACAGTTTCTCTTGAAACACAAACA
Found at i:4787802 original size:102 final size:101
Alignment explanation
Indices: 4787488--4787781 Score: 338
Period size: 102 Copynumber: 2.9 Consensus size: 101
4787478 GTTTCTCTCG
* * * * * * *
4787488 AAACAAAGTTTAGTCTTGCTTGAGAAAGTTTCCATTGAAGCCCAAATTTCGAAGTTGTTTCACTT
1 AAACAAA-TTTCGTCTTGCTTGAGAAAATTTCCCTTGAAACACAAATTTTGAAATTGTTTCACTT
* *
4787553 G-AAACAAATTGATCTCACTTGAGATTGTTTTCCTAA
65 GAAAAAAAATTGATCTCACTTGAGATTGTTCTCCTAA
* * ** ** *
4787589 AAATAAATTTCATCTTGCTTGAGACAGTTTTCCCTCAAAACACAATTTTTGAAATTGTTTCACTT
1 AAACAAATTTCGTCTTGCTTGAGA-AAATTTCCCTTGAAACACAAATTTTGAAATTGTTTCACTT
* * * *
4787654 GAAACAAAATTGATATCACTTGATATTGTTTTCCTAA
65 GAAAAAAAATTGATCTCACTTGAGATTGTTCTCCTAA
* *
4787691 AAACAAATTTCGTCTCGCTTGAGATAAATTTCCCTTGAAACACAAATTTTGAAATTGTTTCACTC
1 AAACAAATTTCGTCTTGCTTGAGA-AAATTTCCCTTGAAACACAAATTTTGAAATTGTTTCACTT
* *
4787756 GAAAAAAAATTTATCTCACCTGAGAT
65 GAAAAAAAATTGATCTCACTTGAGAT
4787782 AACTTCTCTT
Statistics
Matches: 159, Mismatches: 32, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
100 15 0.09
101 37 0.23
102 107 0.67
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.36
Consensus pattern (101 bp):
AAACAAATTTCGTCTTGCTTGAGAAAATTTCCCTTGAAACACAAATTTTGAAATTGTTTCACTTG
AAAAAAAATTGATCTCACTTGAGATTGTTCTCCTAA
Found at i:4789345 original size:28 final size:27
Alignment explanation
Indices: 4789314--4789380 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 27
4789304 TTAGTTATGC
4789314 TTTTATTTATTT-CAAATTAACCACTGA
1 TTTTATTTATTTGCAAATTAACCACT-A
* **
4789341 TTTTTATTTTTTTGCACTTTAACCACTA
1 -TTTTATTTATTTGCAAATTAACCACTA
*
4789369 TTATATTTATTT
1 TTTTATTTATTT
4789381 ATCGCTACTA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
27 10 0.30
28 12 0.36
29 11 0.33
ACGTcount: A:0.27, C:0.13, G:0.03, T:0.57
Consensus pattern (27 bp):
TTTTATTTATTTGCAAATTAACCACTA
Found at i:4790437 original size:22 final size:22
Alignment explanation
Indices: 4790402--4790443 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
4790392 TTTTATTTTA
*
4790402 TTTATTTAAATTGAGAATTAGG
1 TTTATTTAAATTGACAATTAGG
* *
4790424 TTTATTTTATTTGACAATTA
1 TTTATTTAAATTGACAATTA
4790444 CGATGTTTGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.33, C:0.02, G:0.12, T:0.52
Consensus pattern (22 bp):
TTTATTTAAATTGACAATTAGG
Found at i:4790827 original size:18 final size:18
Alignment explanation
Indices: 4790806--4790855 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
4790796 AAACGTTAAG
4790806 GTCAAAGTCAACGGTTCA
1 GTCAAAGTCAACGGTTCA
** *
4790824 GTCAAAGTCAATAGTTTA
1 GTCAAAGTCAACGGTTCA
*
4790842 GTCAAGGTCAACGG
1 GTCAAAGTCAACGG
4790856 GTCAAACCGA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (18 bp):
GTCAAAGTCAACGGTTCA
Found at i:4799537 original size:28 final size:29
Alignment explanation
Indices: 4799505--4799572 Score: 111
Period size: 28 Copynumber: 2.3 Consensus size: 29
4799495 GTATGGATTA
4799505 GAAAAAATGGAAGACAAGGGGCA-ATGAG
1 GAAAAAATGGAAGACAAGGGGCACATGAG
4799533 GAAAAAATGGAAGACAAGGGGCATGCATGAG
1 GAAAAAATGGAAGACAAGGGGCA--CATGAG
4799564 GAAAAAATG
1 GAAAAAATG
4799573 AGATATGATA
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
28 23 0.62
31 14 0.38
ACGTcount: A:0.50, C:0.07, G:0.34, T:0.09
Consensus pattern (29 bp):
GAAAAAATGGAAGACAAGGGGCACATGAG
Found at i:4804520 original size:18 final size:18
Alignment explanation
Indices: 4804493--4804540 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
4804483 TTCGGGTCGG
* *
4804493 CTGCAGTTGGGTCGGATC
1 CTGCAATTGGGTCAGATC
4804511 CTGCAATTGGGTCAGATC
1 CTGCAATTGGGTCAGATC
*
4804529 CTACAATTGGGT
1 CTGCAATTGGGT
4804541 ATGCTGAGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.19, C:0.21, G:0.31, T:0.29
Consensus pattern (18 bp):
CTGCAATTGGGTCAGATC
Found at i:4805126 original size:137 final size:134
Alignment explanation
Indices: 4804887--4805279 Score: 464
Period size: 137 Copynumber: 2.9 Consensus size: 134
4804877 GGTTCATACG
4804887 TGATGAGGACGGTTGGTTATCTAAGGTTGACGCGGCTCCTACGTGATGAGGAGATCTGGTCGGTG
1 TGATGAGGAC-GTTGGTTATCTAAGGTTGACGCGGCTCCTACGTGATGAGGAGA-CTGGTCGGTG
* * * * * *
4804952 GATGAAACGGTTCCTACACGATGAGGATGACTAGCCATATTTAGGGATAATGGTGACAACAC-AG
64 GATGACAC-ATTCCTACGCGATGAGGATGGCTGGCCATCTTTAGGGATAATGGTGACAACACTA-
4805016 TTCCTATA
127 TTCCTATA
* *
4805024 TGATGAGGACAGTTGGTTATCTAAGGTTGATGCGGCTCCTACGTGATGAGGAGACCTGGTCAGTG
1 TGATGAGGAC-GTTGGTTATCTAAGGTTGACGCGGCTCCTACGTGATGAGGAGA-CTGGTCGGTG
* *
4805089 GATGACACATTTCCTACGCGATGAGGAAGGCTGGCCATCTTTAGGGATAATGGTGATAACACTAT
64 GATGACACA-TTCCTACGCGATGAGGATGGCTGGCCATCTTTAGGGATAATGGTGACAACACTAT
** *
4805154 TTTTATG
128 TCCTATA
* * * ** * *
4805161 TGATGAGGACGACTGATTATCTAAGGTTGACACAACTCATACGTGATGAGGATGACTGGTTGGTG
1 TGATGAGGACG-TTGGTTATCTAAGGTTGACGCGGCTCCTACGTGATGAGGA-GACTGGTCGGTG
* * * * *
4805226 GATGACACGATTCATACGTGATAAGGATGGCTGACCATCTTTAGAGATAATGGT
64 GATGACAC-ATTCCTACGCGATGAGGATGGCTGGCCATCTTTAGGGATAATGGT
4805280 TTCAAGAGAA
Statistics
Matches: 221, Mismatches: 30, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
136 1 0.00
137 216 0.98
138 4 0.02
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.28
Consensus pattern (134 bp):
TGATGAGGACGTTGGTTATCTAAGGTTGACGCGGCTCCTACGTGATGAGGAGACTGGTCGGTGGA
TGACACATTCCTACGCGATGAGGATGGCTGGCCATCTTTAGGGATAATGGTGACAACACTATTCC
TATA
Found at i:4805318 original size:36 final size:36
Alignment explanation
Indices: 4805278--4805396 Score: 193
Period size: 36 Copynumber: 3.3 Consensus size: 36
4805268 AGAGATAATG
* * *
4805278 GTTTCAAGAGAAACCATCTCAAGAGAGACAAAACTT
1 GTTTCAAGGGAAACTATCTCAAGGGAGACAAAACTT
*
4805314 GTTTCAAGGGAAACTGTCTCAAGGGAGACAAAACTT
1 GTTTCAAGGGAAACTATCTCAAGGGAGACAAAACTT
4805350 GTTTCAAGGGAAACTATCTCAAGGGAGACAAAACTT
1 GTTTCAAGGGAAACTATCTCAAGGGAGACAAAACTT
*
4805386 GGTTCAAGGGA
1 GTTTCAAGGGA
4805397 GACAAAACTT
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 77 1.00
ACGTcount: A:0.39, C:0.17, G:0.24, T:0.21
Consensus pattern (36 bp):
GTTTCAAGGGAAACTATCTCAAGGGAGACAAAACTT
Found at i:4805320 original size:21 final size:21
Alignment explanation
Indices: 4805296--4805417 Score: 115
Period size: 21 Copynumber: 6.4 Consensus size: 21
4805286 AGAAACCATC
*
4805296 TCAAGAGAGACAAAACTTGTT
1 TCAAGGGAGACAAAACTTGTT
*
4805317 TCAA-GG-G---AAAC-TGTC
1 TCAAGGGAGACAAAACTTGTT
4805332 TCAAGGGAGACAAAACTTGTT
1 TCAAGGGAGACAAAACTTGTT
* *
4805353 TCAA-GG-G---AAAC-TATC
1 TCAAGGGAGACAAAACTTGTT
*
4805368 TCAAGGGAGACAAAACTTGGT
1 TCAAGGGAGACAAAACTTGTT
4805389 TCAAGGGAGACAAAACTTGTT
1 TCAAGGGAGACAAAACTTGTT
4805410 TCAAGGGA
1 TCAAGGGA
4805418 AACCATCTCA
Statistics
Matches: 80, Mismatches: 9, Indels: 24
0.71 0.08 0.21
Matches are distributed among these distances:
15 13 0.16
16 12 0.15
17 2 0.03
19 2 0.03
20 11 0.14
21 40 0.50
ACGTcount: A:0.39, C:0.16, G:0.25, T:0.21
Consensus pattern (21 bp):
TCAAGGGAGACAAAACTTGTT
Found at i:4805393 original size:57 final size:57
Alignment explanation
Indices: 4805332--4805453 Score: 217
Period size: 57 Copynumber: 2.1 Consensus size: 57
4805322 GGAAACTGTC
*
4805332 TCAAGGGAGACAAAACTTGTTTCAAGGGAAACTATCTCAAGGGAGACAAAACTTGGT
1 TCAAGGGAGACAAAACTTGTTTCAAGGGAAACCATCTCAAGGGAGACAAAACTTGGT
* *
4805389 TCAAGGGAGACAAAACTTGTTTCAAGGGAAACCATCTCAAGGGAGATAAAACTTGTT
1 TCAAGGGAGACAAAACTTGTTTCAAGGGAAACCATCTCAAGGGAGACAAAACTTGGT
4805446 TCAAGGGA
1 TCAAGGGA
4805454 AACAGACTCA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 62 1.00
ACGTcount: A:0.39, C:0.16, G:0.25, T:0.21
Consensus pattern (57 bp):
TCAAGGGAGACAAAACTTGTTTCAAGGGAAACCATCTCAAGGGAGACAAAACTTGGT
Found at i:4805464 original size:36 final size:36
Alignment explanation
Indices: 4805389--4805464 Score: 118
Period size: 36 Copynumber: 2.1 Consensus size: 36
4805379 AAAACTTGGT
*
4805389 TCAAGGGAGACAAAACTTGTTTCAAGGGAAACCATC
1 TCAAGGGAGACAAAACTTGTTTCAAGGGAAACCAAC
*
4805425 TCAAGGGAGATAAAACTTGTTTCAAGGGAAA-CAGAC
1 TCAAGGGAGACAAAACTTGTTTCAAGGGAAACCA-AC
4805461 TCAA
1 TCAA
4805465 ATATTTTTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
35 2 0.05
36 35 0.95
ACGTcount: A:0.41, C:0.17, G:0.22, T:0.20
Consensus pattern (36 bp):
TCAAGGGAGACAAAACTTGTTTCAAGGGAAACCAAC
Found at i:4805464 original size:93 final size:93
Alignment explanation
Indices: 4805296--4805464 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
4805286 AGAAACCATC
**
4805296 TCAAGAGAGACAAAACTTGTTTCAAGGGAAACTGTCTCAAGGGAGACAAAACTTGTTTCAAGGGA
1 TCAAGAGAGACAAAACTTGTTTCAAGGGAAACCATCTCAAGGGAGACAAAACTTGTTTCAAGGGA
*
4805361 AACTATCTCAAGGGAGACAAAACTTGGT
66 AACTAACTCAAGGGAGACAAAACTTGGT
* *
4805389 TCAAGGGAGACAAAACTTGTTTCAAGGGAAACCATCTCAAGGGAGATAAAACTTGTTTCAAGGGA
1 TCAAGAGAGACAAAACTTGTTTCAAGGGAAACCATCTCAAGGGAGACAAAACTTGTTTCAAGGGA
4805454 AAC-AGACTCAA
66 AACTA-ACTCAA
4805465 ATATTTTTTT
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 69 0.99
ACGTcount: A:0.40, C:0.17, G:0.23, T:0.21
Consensus pattern (93 bp):
TCAAGAGAGACAAAACTTGTTTCAAGGGAAACCATCTCAAGGGAGACAAAACTTGTTTCAAGGGA
AACTAACTCAAGGGAGACAAAACTTGGT
Found at i:4805506 original size:54 final size:53
Alignment explanation
Indices: 4805425--4805526 Score: 159
Period size: 54 Copynumber: 1.9 Consensus size: 53
4805415 GGAAACCATC
* * *
4805425 TCAAGGGAGATAAAACTTGTTTCAAGGGAAACAGACTCAAATATTTTTTTGTT
1 TCAAGAGAGAAAAAACTTGTTTCAAGGGAAACAGACTCAAAGATTTTTTTGTT
*
4805478 TCAAGAGAGAAAAAACTTTGTTTCAAGGGAAATAGACTCAAAGATTTTT
1 TCAAGAGAGAAAAAAC-TTGTTTCAAGGGAAACAGACTCAAAGATTTTT
4805527 GTTTTAATAG
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
53 14 0.32
54 30 0.68
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.31
Consensus pattern (53 bp):
TCAAGAGAGAAAAAACTTGTTTCAAGGGAAACAGACTCAAAGATTTTTTTGTT
Found at i:4805577 original size:37 final size:36
Alignment explanation
Indices: 4805536--4805778 Score: 123
Period size: 37 Copynumber: 7.1 Consensus size: 36
4805526 TGTTTTAATA
4805536 GAAACTGTCTCAAGAGAGACAAAACTTTTTTTCAAGG
1 GAAACTGTCTCAAGA-AGACAAAACTTTTTTTCAAGG
* * *
4805573 GAAACAGACTC-A-AAG-----ACTTTTGTTTCAAGA
1 GAAACTGTCTCAAGAAGACAAAACTTTT-TTTCAAGG
* * *
4805603 GAAACTGTCTCAAGAGATACAAAACTTTGTTTAAAGG
1 GAAACTGTCTCAAGA-AGACAAAACTTTTTTTCAAGG
* * * *
4805640 GAAACAGACTCAA-AA-AC----TTTTTTTTCAAGA
1 GAAACTGTCTCAAGAAGACAAAACTTTTTTTCAAGG
*
4805670 GAAAGTGTCTCAAGAGAGACAAAACTTTGTTTT-AAGG
1 GAAACTGTCTCAAGA-AGACAAAACTTT-TTTTCAAGG
* * **
4805707 GAAACAGACTC-A-AAG-----ACTTTTGTTTCAATA
1 GAAACTGTCTCAAGAAGACAAAACTTTT-TTTCAAGG
* *
4805737 GAAACTATCTCAAGAAAGACAAAACTTTGTTTCAAGG
1 GAAACTGTCTCAAG-AAGACAAAACTTTTTTTCAAGG
4805774 GAAAC
1 GAAAC
4805779 AGACTCAAAG
Statistics
Matches: 148, Mismatches: 31, Indels: 54
0.64 0.13 0.23
Matches are distributed among these distances:
28 1 0.01
29 14 0.09
30 45 0.30
31 3 0.02
32 2 0.01
33 6 0.04
34 6 0.04
35 3 0.02
36 3 0.02
37 51 0.34
38 14 0.09
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (36 bp):
GAAACTGTCTCAAGAAGACAAAACTTTTTTTCAAGG
Found at i:4805586 original size:67 final size:67
Alignment explanation
Indices: 4805478--4805791 Score: 477
Period size: 67 Copynumber: 4.7 Consensus size: 67
4805468 TTTTTTTGTT
* * * *
4805478 TCAAGAGAGAAAAAACTTTGTTTCAAGGGAAATAGACTCAAAGATTTTTGTTTTAATAGAAACTG
1 TCAAGAGAGACAAAACTTTGTTTCAAGGGAAACAGACTCAAAGATTTTTGTTTCAAGAGAAACTG
4805543 TC
66 TC
* *
4805545 TCAAGAGAGACAAAACTTTTTTTCAAGGGAAACAGACTCAAAGACTTTTGTTTCAAGAGAAACTG
1 TCAAGAGAGACAAAACTTTGTTTCAAGGGAAACAGACTCAAAGATTTTTGTTTCAAGAGAAACTG
4805610 TC
66 TC
* * * *
4805612 TCAAGAGATACAAAACTTTGTTTAAAGGGAAACAGACTCAAAAACTTTTT-TTTCAAGAGAAAGT
1 TCAAGAGAGACAAAACTTTGTTTCAAGGGAAACAGACTCAAAGA-TTTTTGTTTCAAGAGAAACT
4805676 GTC
65 GTC
* * * *
4805679 TCAAGAGAGACAAAACTTTGTTTTAAGGGAAACAGACTCAAAGACTTTTGTTTCAATAGAAACTA
1 TCAAGAGAGACAAAACTTTGTTTCAAGGGAAACAGACTCAAAGATTTTTGTTTCAAGAGAAACTG
4805744 TC
66 TC
*
4805746 TCAAGAAAGACAAAACTTTGTTTCAAGGGAAACAGACTCAAAGATT
1 TCAAGAGAGACAAAACTTTGTTTCAAGGGAAACAGACTCAAAGATT
4805792 ATGTCTTAAG
Statistics
Matches: 223, Mismatches: 22, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
66 4 0.02
67 215 0.96
68 4 0.02
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (67 bp):
TCAAGAGAGACAAAACTTTGTTTCAAGGGAAACAGACTCAAAGATTTTTGTTTCAAGAGAAACTG
TC
Found at i:4805601 original size:30 final size:30
Alignment explanation
Indices: 4805555--4805734 Score: 103
Period size: 30 Copynumber: 5.6 Consensus size: 30
4805545 TCAAGAGAGA
4805555 CAAA-ACTTTT-TTTCAAGGGAAACAGACT
1 CAAAGACTTTTGTTTCAAGGGAAACAGACT
* * *
4805583 CAAAGACTTTTGTTTCAAGAGAAACTGTCT
1 CAAAGACTTTTGTTTCAAGGGAAACAGACT
* *
4805613 CAAGAGATACAAAACTTTGTTTAAAGGGAAACAGACT
1 CAA-AG--AC----TTTTGTTTCAAGGGAAACAGACT
* * * ** *
4805650 CAAAAACTTTTTTTTCAAGAGAAAGTGTCT
1 CAAAGACTTTTGTTTCAAGGGAAACAGACT
* *
4805680 CAAGAGAGACAAAACTTTGTTTTAAGGGAAACAGACT
1 C-A-A-AGAC----TTTTGTTTCAAGGGAAACAGACT
4805717 CAAAGACTTTTGTTTCAA
1 CAAAGACTTTTGTTTCAA
4805735 TAGAAACTAT
Statistics
Matches: 110, Mismatches: 26, Indels: 30
0.66 0.16 0.18
Matches are distributed among these distances:
28 4 0.04
29 6 0.05
30 44 0.40
31 3 0.03
32 1 0.01
33 5 0.05
34 6 0.05
35 1 0.01
36 2 0.02
37 38 0.35
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (30 bp):
CAAAGACTTTTGTTTCAAGGGAAACAGACT
Found at i:4805947 original size:35 final size:34
Alignment explanation
Indices: 4805907--4806005 Score: 99
Period size: 36 Copynumber: 2.8 Consensus size: 34
4805897 CATATCCAAG
* *
4805907 GAAAAATGTCTCAGGTGAGACGAAATTTATTTCGA
1 GAAAAATGTCTCA-GCGAGACAAAATTTATTTCGA
* *
4805942 GAAAAATTGTCTCCAGCGAGACAAAATTTTTTTTGA
1 GAAAAA-TGTCT-CAGCGAGACAAAATTTATTTCGA
* * *
4805978 GAAAATTGTCTCAAACGAGAAAAAATTT
1 GAAAAATGTCTC-AGCGAGACAAAATTT
4806006 GTTTTTAAGA
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
34 1 0.02
35 24 0.44
36 27 0.50
37 2 0.04
ACGTcount: A:0.40, C:0.12, G:0.18, T:0.29
Consensus pattern (34 bp):
GAAAAATGTCTCAGCGAGACAAAATTTATTTCGA
Found at i:4805963 original size:36 final size:37
Alignment explanation
Indices: 4805907--4805989 Score: 102
Period size: 36 Copynumber: 2.4 Consensus size: 37
4805897 CATATCCAAG
* *
4805907 GAAAAA-TGTCT-CAGGTGAGACGAAATTTATTTCGA
1 GAAAAATTGTCTCCAGGCGAGACAAAATTTATTTCGA
* *
4805942 GAAAAATTGTCTCCA-GCGAGACAAAATTTTTTTTGA
1 GAAAAATTGTCTCCAGGCGAGACAAAATTTATTTCGA
4805978 G-AAAATTGTCTC
1 GAAAAATTGTCTC
4805990 AAACGAGAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
35 17 0.40
36 23 0.55
37 2 0.05
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.31
Consensus pattern (37 bp):
GAAAAATTGTCTCCAGGCGAGACAAAATTTATTTCGA
Found at i:4806034 original size:37 final size:35
Alignment explanation
Indices: 4805944--4806034 Score: 119
Period size: 35 Copynumber: 2.5 Consensus size: 35
4805934 TATTTCGAGA
* * *
4805944 AAAATTGTCTCCAGCGAGACAAAATTTTTTTTGAG
1 AAAATTGTCTCAAGCGAGAAAAAATTTTTTTTAAG
*
4805979 AAAATTGTCTCAAACGAGAAAAAATTTGTTTTTAAG
1 AAAATTGTCTCAAGCGAGAAAAAATTT-TTTTTAAG
*
4806015 AAAATCTGTCTCTAGCGAGA
1 AAAAT-TGTCTCAAGCGAGA
4806035 TGTCACTTTG
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
35 24 0.50
36 12 0.25
37 12 0.25
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.32
Consensus pattern (35 bp):
AAAATTGTCTCAAGCGAGAAAAAATTTTTTTTAAG
Found at i:4807516 original size:8 final size:8
Alignment explanation
Indices: 4807503--4807527 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
4807493 CTTTATTGTG
4807503 TGTGTGTA
1 TGTGTGTA
4807511 TGTGTGTA
1 TGTGTGTA
4807519 TGTGTGTA
1 TGTGTGTA
4807527 T
1 T
4807528 ATATATATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.36, T:0.52
Consensus pattern (8 bp):
TGTGTGTA
Found at i:4810914 original size:21 final size:21
Alignment explanation
Indices: 4810888--4810935 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
4810878 ATGAATAAAG
4810888 AAAATATTACTTAAATGATTC
1 AAAATATTACTTAAATGATTC
4810909 AAAATATTACTTAAATGATTC
1 AAAATATTACTTAAATGATTC
*
4810930 ATAATA
1 AAAATA
4810936 ATAATAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (21 bp):
AAAATATTACTTAAATGATTC
Found at i:4812275 original size:3 final size:3
Alignment explanation
Indices: 4812267--4812311 Score: 83
Period size: 3 Copynumber: 15.3 Consensus size: 3
4812257 TAAATTTGTA
4812267 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA- AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
4812312 TGACCACAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:4813845 original size:298 final size:295
Alignment explanation
Indices: 4813299--4813852 Score: 855
Period size: 298 Copynumber: 1.9 Consensus size: 295
4813289 TTGTTGTTGA
*
4813299 AAACCCTAAACCCTAACCATTCTCTCTCTAATCAATTTCTTCTTATAAAAATAAATTTGTAACCA
1 AAACCCTAAACCCTAACCATTCTCTCTCCAATCAATTTCTTCTTATAAAAATAAATTTGTAACCA
*
4813364 CCATCATGGTAGATACACCATCCTCTACCCCTTTCATTGCCCTCAACATACCATGAATTTATAAA
66 CCATCATGGTAGATACACCATCCTCTACCCCTTTCATTGCACTCAACATACCATGAATTTATAAA
4813429 GGTTTTTAGCAACAACTAAAATATTTTAGGGTTTAGGGTTCACAAAATCAATATACAACAAATAA
131 GGTTTTTAGCAACAACTAAAATATTTTAGGGTTTAGGGTTCACAAAATCAATATA-AACAAATAA
4813494 TATAAGTAACTATTGATTTTGTGAACCCTAAACCCTAAAATATTTTAGTTGTTGCTAAAAAACCC
195 TATAAGTAACTATTGATTTTGTGAACCCTAAACCCTAAAATATTTTAGTTGTTGCTAAAAAACCC
4813559 TAAACCCTAAATCATAATCACTAATCCATAATCACT
260 TAAACCCTAAATCATAATCACTAATCCATAATCACT
*
4813595 AAACTCTAAACCCTAACCATTCTGCT-TCCAATCAATTTCTTCTTATAAAAAATAAATTTGTAAC
1 AAACCCTAAACCCTAACCATTCT-CTCTCCAATCAATTTCTTCTTAT-AAAAATAAATTTGTAAC
* * **
4813659 CACCATTATGGTATATATCACCATGTTCTACCCCTTTCATTGCACTCAACATACCATGAATTTAT
64 CACCATCATGGTAGATA-CACCATCCTCTACCCCTTTCATTGCACTCAACATACCATGAATTTAT
* * **
4813724 AAAGGTTTTTAGCAACAA-TCAAAATATTTTAGGGTTTAGGTTTCACAAAATCAATAGT-TACTT
128 AAAGGTTTTTAGCAACAACT-AAAATATTTTAGGGTTTAGGGTTCACAAAATCAATA-TAAACAA
* ** * * *
4813787 ATATTATTTGTTGTA-TATTGATTTTGTGAACCCTAAACCCTAAAATATTTTGGTTGTTGCTCAA
191 ATAATATAAG-T-AACTATTGATTTTGTGAACCCTAAACCCTAAAATATTTTAGTTGTTGCTAAA
4813851 AA
254 AA
4813853 CCTTTATAAA
Statistics
Matches: 234, Mismatches: 17, Indels: 12
0.89 0.06 0.05
Matches are distributed among these distances:
296 41 0.18
297 44 0.19
298 147 0.63
299 2 0.01
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.34
Consensus pattern (295 bp):
AAACCCTAAACCCTAACCATTCTCTCTCCAATCAATTTCTTCTTATAAAAATAAATTTGTAACCA
CCATCATGGTAGATACACCATCCTCTACCCCTTTCATTGCACTCAACATACCATGAATTTATAAA
GGTTTTTAGCAACAACTAAAATATTTTAGGGTTTAGGGTTCACAAAATCAATATAAACAAATAAT
ATAAGTAACTATTGATTTTGTGAACCCTAAACCCTAAAATATTTTAGTTGTTGCTAAAAAACCCT
AAACCCTAAATCATAATCACTAATCCATAATCACT
Found at i:4821221 original size:64 final size:64
Alignment explanation
Indices: 4821082--4821225 Score: 164
Period size: 64 Copynumber: 2.2 Consensus size: 64
4821072 GAATAAATTG
*** * * * * *
4821082 AATATCAAATGCATTTCATGCATCGATGCACTCTCTATGAATCGATGCACTTGGGTTTTATTAA
1 AATATCAAATGCATTTCATGCATCGATGCACAAGCAATGAACCGATGCACTAGGCTATTATTAA
* * *
4821146 AACATCAAATGCATTTCATGCATCGATGCACAAGCAATGCACCGATGCACTCAGGCTATT-TTCA
1 AATATCAAATGCATTTCATGCATCGATGCACAAGCAATGAACCGATGCACT-AGGCTATTATTAA
*
4821210 AATATCGAATGCATTT
1 AATATCAAATGCATTT
4821226 TACACTGATG
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
64 61 0.92
65 5 0.08
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (64 bp):
AATATCAAATGCATTTCATGCATCGATGCACAAGCAATGAACCGATGCACTAGGCTATTATTAA
Found at i:4826906 original size:64 final size:64
Alignment explanation
Indices: 4826792--4826915 Score: 151
Period size: 64 Copynumber: 1.9 Consensus size: 64
4826782 GTGCACCAAG
* * * *
4826792 TGTGTATCGATGCATAAAATGCATTCGATGTTTGAAAATAGCCGTAGTGCATCGGTGCATTGCT
1 TGTGCATCGATGCATAAAATGCATTCGATGTTTCAAAATAGCCATAGTGCATCGATGCATTGCT
* ** * *
4826856 TGTGCATCGATGCATGAAATGCATTCGATG-TTCAATTTATTCCATGGTGCATCGATGCAT
1 TGTGCATCGATGCATAAAATGCATTCGATGTTTCAAAATA-GCCATAGTGCATCGATGCAT
4826916 GGATTGATGC
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
63 6 0.12
64 44 0.88
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (64 bp):
TGTGCATCGATGCATAAAATGCATTCGATGTTTCAAAATAGCCATAGTGCATCGATGCATTGCT
Found at i:4827682 original size:23 final size:23
Alignment explanation
Indices: 4827654--4827739 Score: 91
Period size: 23 Copynumber: 3.7 Consensus size: 23
4827644 GCTCGTATCA
*
4827654 AATGCACTGAAGTGCCACGTAGT
1 AATGCACCGAAGTGCCACGTAGT
***
4827677 AATGCACCGAAGTGCTGTGTAGT
1 AATGCACCGAAGTGCCACGTAGT
* *** *
4827700 AATGCACCGAATTGTTGCGTAGG
1 AATGCACCGAAGTGCCACGTAGT
4827723 AATGCACCGAAGTGCCA
1 AATGCACCGAAGTGCCA
4827740 TATAAAATGT
Statistics
Matches: 51, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (23 bp):
AATGCACCGAAGTGCCACGTAGT
Found at i:4827801 original size:21 final size:21
Alignment explanation
Indices: 4827777--4827856 Score: 67
Period size: 21 Copynumber: 3.8 Consensus size: 21
4827767 AAATCTCCTT
4827777 AAGAATCATATATATATTCCA
1 AAGAATCATATATATATTCCA
*
4827798 AAGAACCA-A-ATATATGTCTCA
1 AAGAATCATATATATAT-TC-CA
* * *
4827819 AAGACTCACATATATGTTCCA
1 AAGAATCATATATATATTCCA
*
4827840 AATG-ATTATATATATAT
1 AA-GAATCATATATATAT
4827857 CCCGAAGGAC
Statistics
Matches: 46, Mismatches: 8, Indels: 10
0.72 0.12 0.16
Matches are distributed among these distances:
19 6 0.13
20 3 0.07
21 28 0.61
22 4 0.09
23 5 0.11
ACGTcount: A:0.45, C:0.15, G:0.07, T:0.33
Consensus pattern (21 bp):
AAGAATCATATATATATTCCA
Found at i:4833671 original size:23 final size:23
Alignment explanation
Indices: 4833611--4833674 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
4833601 AACTCGTATC
*
4833611 AAATGCACCAAAGTACCACGTAG
1 AAATGCACCAAAGTGCCACGTAG
*
4833634 AAATGTACCAAAGTGCCACGTAG
1 AAATGCACCAAAGTGCCACGTAG
* *
4833657 GAATGCACCGAAGTGCCA
1 AAATGCACCAAAGTGCCA
4833675 TATAAAATGT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.39, C:0.25, G:0.22, T:0.14
Consensus pattern (23 bp):
AAATGCACCAAAGTGCCACGTAG
Found at i:4840614 original size:23 final size:23
Alignment explanation
Indices: 4840588--4840646 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 23
4840578 GTATCAAATG
* *
4840588 CACCGAAGTGCCACGTAGTAATA
1 CACCGAAGTGCCACATAGGAATA
* * * *
4840611 CACCAAAGTACCGCATAGGAATG
1 CACCGAAGTGCCACATAGGAATA
4840634 CACCGAAGTGCCA
1 CACCGAAGTGCCA
4840647 TATAAAATGT
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.36, C:0.29, G:0.22, T:0.14
Consensus pattern (23 bp):
CACCGAAGTGCCACATAGGAATA
Found at i:4844551 original size:2 final size:2
Alignment explanation
Indices: 4844544--4844625 Score: 139
Period size: 2 Copynumber: 41.5 Consensus size: 2
4844534 ATTTATAATT
* *
4844544 TA TA TA TA TA TT TA TA TA AA TA T- TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4844585 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4844626 CATTTTTAAT
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
1 1 0.01
2 74 0.99
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:4850806 original size:39 final size:39
Alignment explanation
Indices: 4850748--4851004 Score: 286
Period size: 39 Copynumber: 6.6 Consensus size: 39
4850738 AATAAAATGT
* * * *
4850748 CCAACTATTTATTTTCTTTTACAAAACAGGAAATTAAAC
1 CCAACGATTTATTTCCTTTTACAAAATAGGAAAATAAAC
*
4850787 CCAACGATTTATTTCCTTTTACAAATTA-GAAAATTAAAC
1 CCAACGATTTATTTCCTTTTACAAAATAGGAAAA-TAAAC
** *
4850826 CCAACGATTTATTTATTTTTACAAAATAAGAAAATAAAC
1 CCAACGATTTATTTCCTTTTACAAAATAGGAAAATAAAC
* * *
4850865 CCAACGATTTATTTTCTTCTACAAAATAGG-AAA-AAAT
1 CCAACGATTTATTTCCTTTTACAAAATAGGAAAATAAAC
* ** * *
4850902 CAAATAATTTATTTCCTTTTACAAAATAGAAAAATAAAT
1 CCAACGATTTATTTCCTTTTACAAAATAGGAAAATAAAC
* * * * *
4850941 CAAACGATTTATTTCCTTTTACATAACATGAAAATAAAT
1 CCAACGATTTATTTCCTTTTACAAAATAGGAAAATAAAC
*
4850980 ACAACGATTTATTTCCTTTTACAAA
1 CCAACGATTTATTTCCTTTTACAAA
4851005 CCAGAATCAT
Statistics
Matches: 186, Mismatches: 28, Indels: 8
0.84 0.13 0.04
Matches are distributed among these distances:
37 27 0.15
38 10 0.05
39 144 0.77
40 5 0.03
ACGTcount: A:0.44, C:0.16, G:0.05, T:0.35
Consensus pattern (39 bp):
CCAACGATTTATTTCCTTTTACAAAATAGGAAAATAAAC
Found at i:4850947 original size:115 final size:116
Alignment explanation
Indices: 4850748--4851004 Score: 327
Period size: 115 Copynumber: 2.2 Consensus size: 116
4850738 AATAAAATGT
* * * *
4850748 CCAACTATTTATTTTCTTTTACAAAACAGGAAATTAAACCCAACGATTTATTTCCTTTTACAAAT
1 CCAACGATTTATTTTCTTTTACAAAACAGGAAA-TAAACCAAACAATTTATTTCCTTTTACAAAA
* * * *
4850813 TAGAAAATTAAACCCAACGATTTATTTATTTTTACAAAATAAGAAAATAAAC
65 TAGAAAAATAAACCAAACGATTTATTTACTTTTACAAAACAAGAAAATAAAC
* * * *
4850865 CCAACGATTTATTTTCTTCTACAAAATAGGAAA-AAATCAAATAATTTATTTCCTTTTACAAAAT
1 CCAACGATTTATTTTCTTTTACAAAACAGGAAATAAACCAAACAATTTATTTCCTTTTACAAAAT
* * * * *
4850929 AGAAAAATAAATCAAACGATTTATTTCCTTTTACATAACATGAAAATAAAT
66 AGAAAAATAAACCAAACGATTTATTTACTTTTACAAAACAAGAAAATAAAC
* *
4850980 ACAACGATTTATTTCCTTTTACAAA
1 CCAACGATTTATTTTCTTTTACAAA
4851005 CCAGAATCAT
Statistics
Matches: 120, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
115 90 0.75
117 30 0.25
ACGTcount: A:0.44, C:0.16, G:0.05, T:0.35
Consensus pattern (116 bp):
CCAACGATTTATTTTCTTTTACAAAACAGGAAATAAACCAAACAATTTATTTCCTTTTACAAAAT
AGAAAAATAAACCAAACGATTTATTTACTTTTACAAAACAAGAAAATAAAC
Found at i:4851143 original size:60 final size:57
Alignment explanation
Indices: 4851067--4851432 Score: 224
Period size: 58 Copynumber: 6.4 Consensus size: 57
4851057 TACAAGACAG
* * **
4851067 GAAAATAAATCTAACAATTTATTTCCTTTTTTTCTTAATAGAATTC-TTCAAGATTCAT-AA
1 GAAAATAAAT-TAACAATTTATTTAC--TTTTACAAAATAGAA-TCATTCAAGATTC-TCAA
*
4851127 GAAAATAAATTGAACAATTTGATTTACTTTTACAAAATATAATCATTCAAGATTCTCAA
1 GAAAATAAATT-AACAATTT-ATTTACTTTTACAAAATAGAATCATTCAAGATTCTCAA
* * * * * *
4851186 GGAAATAAATTCAACAATTTATTTTC-CTAACAAAGTTAGAATCATTTAAGATTCTCAA
1 GAAAATAAATT-AACAATTTATTTACTTTTACAAA-ATAGAATCATTCAAGATTCTCAA
* * * * * * *
4851244 G-----GAA--AACACTTTCTTT-CTCTTACAAAGTTAGAGTCATTTAAG-TTCCTCAA
1 GAAAATAAATTAACAATTTATTTACTTTTACAAA-ATAGAATCATTCAAGATT-CTCAA
* *
4851294 -AGAAATAAATTTAACAATTTATTTTC-CTTA-AAAAGTTAGAATCATTCAAGATTCTCAA
1 GA-AAATAAA-TTAACAATTTATTTACTTTTACAAAA--TAGAATCATTCAAGATTCTCAA
* * * *
4851352 GAAAATAAATTCAACGATTTATTTTC-CTTACAAAGCTAGAATCATTCAAGATTCTCAA
1 GAAAATAAATT-AACAATTTATTTACTTTTACAAA-ATAGAATCATTCAAGATTCTCAA
* *
4851410 GGAAATAAATTCAACGATTTATT
1 GAAAATAAATT-AACAATTTATT
4851433 ATCCTTACCA
Statistics
Matches: 255, Mismatches: 27, Indels: 50
0.77 0.08 0.15
Matches are distributed among these distances:
49 3 0.01
50 37 0.15
53 2 0.01
55 2 0.01
57 11 0.04
58 128 0.50
59 49 0.19
60 18 0.07
61 5 0.02
ACGTcount: A:0.41, C:0.14, G:0.08, T:0.36
Consensus pattern (57 bp):
GAAAATAAATTAACAATTTATTTACTTTTACAAAATAGAATCATTCAAGATTCTCAA
Found at i:4851242 original size:58 final size:58
Alignment explanation
Indices: 4851105--4851453 Score: 373
Period size: 58 Copynumber: 6.1 Consensus size: 58
4851095 TTTTTCTTAA
* * * * *
4851105 TAGAATTC-TTCAAGATTCAT-AAGAAAATAAATTGAACAATTTGATTTACTTTTACAAA-A
1 TAGAA-TCATTCAAGATTC-TCAAGGAAATAAATTCAACAATTT-ATTTTC-CTTACAAAGT
* *
4851164 TATAATCATTCAAGATTCTCAAGGAAATAAATTCAACAATTTATTTTCCTAACAAAGT
1 TAGAATCATTCAAGATTCTCAAGGAAATAAATTCAACAATTTATTTTCCTTACAAAGT
* *
4851222 TAGAATCATTTAAGATTCTCAAGG--A-AAA--C-AC--TTT-CTTTCTCTTACAAAGT
1 TAGAATCATTCAAGATTCTCAAGGAAATAAATTCAACAATTTATTTTC-CTTACAAAGT
* * * * *
4851272 TAGAGTCATTTAAG-TTCCTCAAAGAAATAAATTTAACAATTTATTTTCCTTAAAAAGT
1 TAGAATCATTCAAGATT-CTCAAGGAAATAAATTCAACAATTTATTTTCCTTACAAAGT
* * *
4851330 TAGAATCATTCAAGATTCTCAAGAAAATAAATTCAACGATTTATTTTCCTTACAAAGC
1 TAGAATCATTCAAGATTCTCAAGGAAATAAATTCAACAATTTATTTTCCTTACAAAGT
* * *
4851388 TAGAATCATTCAAGATTCTCAAGGAAATAAATTCAACGATTTATTATCCTTACCAAGT
1 TAGAATCATTCAAGATTCTCAAGGAAATAAATTCAACAATTTATTTTCCTTACAAAGT
4851446 TAGAATCA
1 TAGAATCA
4851454 CCACAAGATT
Statistics
Matches: 247, Mismatches: 28, Indels: 31
0.81 0.09 0.10
Matches are distributed among these distances:
49 6 0.02
50 31 0.13
52 3 0.01
53 4 0.02
55 3 0.01
56 3 0.01
57 6 0.02
58 151 0.61
59 40 0.16
ACGTcount: A:0.42, C:0.15, G:0.09, T:0.35
Consensus pattern (58 bp):
TAGAATCATTCAAGATTCTCAAGGAAATAAATTCAACAATTTATTTTCCTTACAAAGT
Found at i:4851681 original size:45 final size:45
Alignment explanation
Indices: 4851617--4851915 Score: 321
Period size: 45 Copynumber: 6.6 Consensus size: 45
4851607 AGGTTAATCC
* * * * *
4851617 TTTAATTCTAGCAATCCAATAATCAAAAGGAACTGATCTTTTGAT
1 TTTAATTTTCGCAACCCAATAATCAAAAGGAACTAATCCTTTGAT
* * *
4851662 TTTAATTTTCACAACCCAATAATCAGAAGGAACTAATCATTTGAT
1 TTTAATTTTCGCAACCCAATAATCAAAAGGAACTAATCCTTTGAT
* * *
4851707 TTTAATTTTTGCAACCTAATAATCAAAAGGAGCTAATCCTTTGAT
1 TTTAATTTTCGCAACCCAATAATCAAAAGGAACTAATCCTTTGAT
* * * *
4851752 TTTAATTTTCGCAACTCAATAATAAAAAGGAACTTATCCCTTGAT
1 TTTAATTTTCGCAACCCAATAATCAAAAGGAACTAATCCTTTGAT
* ** * * * *
4851797 TTTAATTTCCGCAACTTAGTTATCGAAGGGAACTAATCCTTTGAT
1 TTTAATTTTCGCAACCCAATAATCAAAAGGAACTAATCCTTTGAT
* * *
4851842 TTTAA-TTTCGGAAACCCAATAATAAAAAAGAACTAATCCTTTGAT
1 TTTAATTTTC-GCAACCCAATAATCAAAAGGAACTAATCCTTTGAT
* * * *
4851887 TTTACTTTTGGCAACACAATAGTCAAAAG
1 TTTAATTTTCGCAACCCAATAATCAAAAG
4851916 CATTGGATTA
Statistics
Matches: 206, Mismatches: 46, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
44 3 0.01
45 200 0.97
46 3 0.01
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (45 bp):
TTTAATTTTCGCAACCCAATAATCAAAAGGAACTAATCCTTTGAT
Found at i:4855238 original size:13 final size:13
Alignment explanation
Indices: 4855220--4855247 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
4855210 TTAACCCCGT
4855220 ATATGAATCCCAC
1 ATATGAATCCCAC
4855233 ATATGAATCCCAC
1 ATATGAATCCCAC
4855246 AT
1 AT
4855248 TTGAGTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.29, G:0.07, T:0.25
Consensus pattern (13 bp):
ATATGAATCCCAC
Found at i:4855294 original size:21 final size:22
Alignment explanation
Indices: 4855252--4855295 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
4855242 CCACATTTGA
*
4855252 GTTTTGATTTTTAGGGAATTAGG
1 GTTTTGA-TTTTAGAGAATTAGG
*
4855275 GTTTTGA-TTTAGAGATTTAGG
1 GTTTTGATTTTAGAGAATTAGG
4855296 TATTAAGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 12 0.63
23 7 0.37
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.48
Consensus pattern (22 bp):
GTTTTGATTTTAGAGAATTAGG
Found at i:4856309 original size:16 final size:16
Alignment explanation
Indices: 4856288--4856321 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
4856278 TAGGACTATA
* *
4856288 TTTATTTTGATTTTCC
1 TTTATTTTAACTTTCC
4856304 TTTATTTTAACTTTCC
1 TTTATTTTAACTTTCC
4856320 TT
1 TT
4856322 ACTTGATTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.15, G:0.03, T:0.68
Consensus pattern (16 bp):
TTTATTTTAACTTTCC
Found at i:4857043 original size:7 final size:6
Alignment explanation
Indices: 4857015--4857047 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
4857005 ATAAAAATTG
*
4857015 ATTTTT -TTTTT ATTTTT ATTTTT AGTTTT ATTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTT
4857048 CTCGATTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
5 5 0.21
6 19 0.79
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (6 bp):
ATTTTT
Found at i:4858649 original size:88 final size:88
Alignment explanation
Indices: 4858500--4858663 Score: 285
Period size: 88 Copynumber: 1.9 Consensus size: 88
4858490 TATGTTATAT
*
4858500 CATTTAACCAGAAATATTATAAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
1 CATTTAACCAGAAATATTATAAAGTACAATAAAATATTAGGTAGCGCTTATATAATGTAATAGGT
*
4858565 AGTGCTTATATAATAAAAATAAG
66 AGCGCTTATATAATAAAAATAAG
*
4858588 CATTTAACC-GTAAATATTATCAAGTACAATAAAATATTAGGTAGCGCTTATATAATGTAATAGG
1 CATTTAACCAG-AAATATTATAAAGTACAATAAAATATTAGGTAGCGCTTATATAATGTAATAGG
4858652 TAGCGCTTATAT
65 TAGCGCTTATAT
4858664 TGACCTATTT
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
87 1 0.01
88 71 0.99
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (88 bp):
CATTTAACCAGAAATATTATAAAGTACAATAAAATATTAGGTAGCGCTTATATAATGTAATAGGT
AGCGCTTATATAATAAAAATAAG
Found at i:4859364 original size:200 final size:200
Alignment explanation
Indices: 4858658--4859382 Score: 773
Period size: 199 Copynumber: 3.6 Consensus size: 200
4858648 TAGGTAGCGC
* * * * * *
4858658 TTATATTGACCTATTTTATCAGT-AAACTGGTAAATTTATACCGGTAACATTGCAAATTTACCTA
1 TTATGTTGACCTATTTTCTCA-TAAAACCGGTATATTTATACCGGTTACATTGTAAATTTACCTA
* * * *
4858722 TTACATTATAATTATCGGTTTCAATGTTTTTT-GGATCGATACAATTT--GAAATGTATCGACAC
65 TTACATTATAATTATTGGTTTCGATGTTTTTTGGGATCGATAC-TTTTAATAAATGTATCGACAC
* * *
4858784 TTTATGTGTGCAGCTCGTTAGGCATTCATTCTGGAAAAAAGTATCGACACAAACTTAA-AAAGTG
129 TTTATGCGTGCAGCTCGTTTGGCATTCATTCTGGACAAAAGTATCGACACAAACTTAACAAA-TG
4858848 TCGATACA
193 TCGATACA
* * * *
4858856 TTAT-TCAGACCTATTTTCTCATAAAACCGGTATATTTCTATCGGGTACATTGTAAATTTACCTA
1 TTATGT-TGACCTATTTTCTCATAAAACCGGTATATTTATACCGGTTACATTGTAAATTTACCTA
* * * * * ** *
4858920 TCACATTGTAATAATCT-ATTTTGATG-TTTTTGGGATCGATACTTTTAATAAATGTGCCGACAA
65 TTACATTATAATTAT-TGGTTTCGATGTTTTTTGGGATCGATACTTTTAATAAATGTATCGACAC
* * * * *
4858983 TTTATGCGTGCA-CCCGTTTGGCATTCATTATGGACAAAATGTATCTACACAAATTTAACAAGTG
129 TTTATGCGTGCAGCTCGTTTGGCATTCATTCTGGACAAAA-GTATCGACACAAACTTAACAAATG
*
4859047 TCGATACT
193 TCGATACA
* ** *
4859055 TTATGCTGACCTATTTTCTCATAAAATTGGTATATTTATACCGGTTACATTGTAAATTTACATAT
1 TTATGTTGACCTATTTTCTCATAAAACCGGTATATTTATACCGGTTACATTGTAAATTTACCTAT
* * * *
4859120 TATA-TACAATT-TTAAAAGTATT-GAT-TTTATTGGGATCGATACTTTTAATAAATGTATCGAC
66 TACATTATAATTATT---GGT-TTCGATGTTTTTTGGGATCGATACTTTTAATAAATGTATCGAC
*
4859181 ACTTTATGCGTGCAGTTCGTTTGGGCATTCATTCTGGACAATAAGTATCGACACAAA-TTACACA
127 ACTTTATGCGTGCAGCTCGTTT-GGCATTCATTCTGGACAA-AAGTATCGACACAAACTTA-ACA
4859245 AATGTCGATACA
189 AATGTCGATACA
* * * * * *
4859257 TTATGTTGACATGTTTTCTAAT-TAACCAGTATATTTATACCGGTTACATTGTTAATTTACCTAT
1 TTATGTTGACCTATTTTCTCATAAAACCGGTATATTTATACCGGTTACATTGTAAATTTACCTAT
* *
4859321 TACATTATAATTATTGGTTTCGATGTTTTTTGGG-TCTATACTTTTAGA-AAATGCATCGACAC
66 TACATTATAATTATTGGTTTCGATGTTTTTTGGGATCGATACTTTTA-ATAAATGTATCGACAC
4859383 ATATTTAGGT
Statistics
Matches: 433, Mismatches: 70, Indels: 46
0.79 0.13 0.08
Matches are distributed among these distances:
196 1 0.00
197 11 0.03
198 106 0.24
199 107 0.25
200 80 0.18
201 58 0.13
202 66 0.15
203 4 0.01
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.39
Consensus pattern (200 bp):
TTATGTTGACCTATTTTCTCATAAAACCGGTATATTTATACCGGTTACATTGTAAATTTACCTAT
TACATTATAATTATTGGTTTCGATGTTTTTTGGGATCGATACTTTTAATAAATGTATCGACACTT
TATGCGTGCAGCTCGTTTGGCATTCATTCTGGACAAAAGTATCGACACAAACTTAACAAATGTCG
ATACA
Found at i:4861883 original size:19 final size:19
Alignment explanation
Indices: 4861859--4861895 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
4861849 CATTCACATA
4861859 TAAAATTATAAATCGTATG
1 TAAAATTATAAATCGTATG
4861878 TAAAATTATAAATCGTAT
1 TAAAATTATAAATCGTAT
4861896 ACAAAATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.49, C:0.05, G:0.08, T:0.38
Consensus pattern (19 bp):
TAAAATTATAAATCGTATG
Found at i:4861901 original size:19 final size:19
Alignment explanation
Indices: 4861860--4861904 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
4861850 ATTCACATAT
**
4861860 AAAATTATAAATCGTATGT
1 AAAATTATAAATCGTATAC
4861879 AAAATTATAAATCGTATAC
1 AAAATTATAAATCGTATAC
4861898 AAAATTA
1 AAAATTA
4861905 ACCCTACATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.33
Consensus pattern (19 bp):
AAAATTATAAATCGTATAC
Found at i:4863755 original size:20 final size:22
Alignment explanation
Indices: 4863715--4863756 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
4863705 CATAAAACCG
*
4863715 GTAAATTTATACTGGTTACATT
1 GTAAATTTATACTGATTACATT
4863737 GTAAATTTA-ACT-ATTACATT
1 GTAAATTTATACTGATTACATT
4863757 ATAATTATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 7 0.37
21 3 0.16
22 9 0.47
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.45
Consensus pattern (22 bp):
GTAAATTTATACTGATTACATT
Found at i:4863927 original size:200 final size:199
Alignment explanation
Indices: 4863453--4864421 Score: 1202
Period size: 200 Copynumber: 4.9 Consensus size: 199
4863443 CGCGTTATTT
* * * *
4863453 AAAAAGTATCGACACAAATT-TAAAAGTGTTGATACATTATGTTGACCTATTCTCTTATAAAACA
1 AAAAAGTATCGACACAAATTCCAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAAC-
* *
4863517 T-GTATATTTATACCGGTTACATTGTAAATTTACCTATTACGTTATAATTATCGGTTTCGATGTT
65 TGGTATATTTATACTGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTT
** * * * *
4863581 TTTGGGATCGATACAATTT-CAAATGTATCGACACTTT-TTCCTGCACCCCTTTGGCATTCATTC
130 TTTGGGATCGATACTTTTTAAAAATGTATCGACACTTTATGCGTGCACCCTTTTGGCATTCATTC
4863644 TGGAC
195 TGGAC
* * *
4863649 AAAATGTATCGACACAAA-TCTAAAACGTGTCGATACATTATGTTA-ACCTATTTTCTCATAAAA
1 AAAAAGTATCGACACAAATTCCAAAA-GTGTCGATACATTATG-TAGACCTATTCTCTCATAAAA
* * * *
4863712 CCGGTAAATTTATACTGGTTACATTGTAAATTTAACTATTACATTATAATTATCAGTTTCGATGT
64 CTGGTATATTTATACTGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGT
* *
4863777 TTTTGGGATCGATACTTTTTAAAAATGTATTGACACTTTATGCGTACAACCCTTTTGGCATTCAT
129 TTTTGGGATCGATACTTTTTAAAAATGTATCGACACTTTATGCGTGC-ACCCTTTTGGCATTCAT
* *
4863842 TTTAGAC
193 TCTGGAC
* * *
4863849 AAAACGCATCGACACAAATTCCACAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACT
1 AAAAAGTATCGACACAAATTCCAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACT
* *
4863914 GGTATAGTTATACTGGTTACATTGTAAATTTACCTATTACATTATAATTATGGGTTTCGATGTTT
66 GGTATATTTATACTGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTT
* * * ** *
4863979 CTGGGATCGATACTTTTTTATAAATGTATCGACACTTTATGCGTTCACTATTTTGGGCATTCAGT
131 TTGGGATCGATAC-TTTTTAAAAATGTATCGACACTTTATGCGTGCACCCTTTT-GGCATTCATT
4864044 CTGGAC
194 CTGGAC
* * * * *
4864050 AAAAAGTATCGACAAAAAATT-CAAAAGTGTTGACACATTATGTAGATCTATTCTCACATAAAAC
1 AAAAAGTATCGAC-ACAAATTCCAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAAC
* * ** * *
4864114 TGATATATTTATACCT-GTTATATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGT
65 TGGTATATTTATA-CTGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGT
* * *
4864178 TTTTTGGATCGATACTTTTTTAAAATGTATCGACACTGTATGCGTGCA-CCTAGTTTGGCATTCA
129 TTTTGGGATCGATACTTTTTAAAAATGTATCGACACTTTATGCGTGCACCCT--TTTGGCATTCA
*
4864242 TTTTGGAC
192 TTCTGGAC
* * * * * * *
4864250 AAAAAGTATCGATACAAATTCCACAAGTGTCGATACATTTTGTATATCTATTTTCTCAAACAAAA
1 AAAAAGTATCGACACAAATTCCAAAAGTGTCGATACATTATGTAGACCTATTCTCTC--ATAAAA
** *
4864315 CCT-GTATATTTATACCAGTTACATTGTAAATTTACCTATTACATTATAATTTTCGGTTTCGATG
64 -CTGGTATATTTATACTGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATG
**
4864379 TTTTTGGGATCGATACTTTTTAAACGTGTATCGACACTTTATG
128 TTTTTGGGATCGATACTTTTTAAAAATGTATCGACACTTTATG
4864422 GGAAACTTTA
Statistics
Matches: 665, Mismatches: 88, Indels: 34
0.84 0.11 0.04
Matches are distributed among these distances:
195 1 0.00
196 22 0.03
197 107 0.16
198 17 0.03
199 13 0.02
200 233 0.35
201 168 0.25
202 102 0.15
203 2 0.00
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.39
Consensus pattern (199 bp):
AAAAAGTATCGACACAAATTCCAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACT
GGTATATTTATACTGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTT
TTGGGATCGATACTTTTTAAAAATGTATCGACACTTTATGCGTGCACCCTTTTGGCATTCATTCT
GGAC
Found at i:4864222 original size:401 final size:396
Alignment explanation
Indices: 4863453--4864421 Score: 1250
Period size: 401 Copynumber: 2.4 Consensus size: 396
4863443 CGCGTTATTT
* * * * * *
4863453 AAAAAGTATCGACACAAATT-TAAAAGTGTTGATACATTATGTTGACCTATTCTCTTATAAAACA
1 AAAAAGCATCGACACAAATTCCACAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAAC-
*
4863517 TGTATATTTATACCGGTTACATTGTAAATTTACCTATTACGTTATAATTATCGGTTTCGATGTTT
65 TGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTT
** * * * *
4863582 TTGGGATCGATACAATTTCAAATGTATCGACACTTT-TTCCTGCACCCCTTTGGCATTCATTCTG
130 TTGGGATCGATACTTTTTAAAATGTATCGACACTTTATGCCTGCACCACTTTGGCATTCAGTCTG
* * * * *
4863646 GACAAAATGTATCGACACAAATCTAAAACGTGTCGATACATTATGTTAACCTATTTTCTCATAAA
195 GACAAAAAGTATCGACAAAAATCTAAAACGTGTCGACACATTATGTTAACCTATTCTCACATAAA
* ** *
4863711 ACCGGTAAATTTATACTGGTTACATTGTAAATTTAACTATTACATTATAATTATCAGTTTCGATG
260 ACCGATAAATTTATACTGGTTACATTACAAAATTAACTATTACATTATAATTATCAGTTTCGATG
* *
4863776 TTTTTGGGATCGATACTTTTTAAAAATGTATTGACACTTTATGCGTACAACCCT-TTTGGCATTC
325 TTTTTGGGATCGATACTTTTTAAAAATGTATCGACACTGTATGCGTAC-A-CCTATTTGGCATTC
4863840 ATTTTAGAC
388 ATTTTAGAC
*
4863849 AAAACGCATCGACACAAATTCCACAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACT
1 AAAAAGCATCGACACAAATTCCACAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACT
* * *
4863914 GGTATAGTTATACTGGTTACATTGTAAATTTACCTATTACATTATAATTATGGGTTTCGATGTTT
66 -GTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTT
* * * * *
4863979 CTGGGATCGATACTTTTTTATAAATGTATCGACACTTTATGCGTTCACTATTTTGGGCATTCAGT
130 TTGGGATCGATAC-TTTTTA-AAATGTATCGACACTTTATGCCTGCACCACTTT-GGCATTCAGT
* *
4864044 CTGGACAAAAAGTATCGACAAAAAAT-TCAAAA-GTGTTGACACATTATG-TAGATCTATTCTCA
192 CTGGACAAAAAGTATCGAC-AAAAATCT-AAAACGTGTCGACACATTATGTTA-ACCTATTCTCA
* * * * **
4864106 CATAAAACTGATATATTTATACCT-GTTATATTACAAAATTACCTATTACATTATAATTATGGGT
254 CATAAAACCGATAAATTTATA-CTGGTTACATTACAAAATTAACTATTACATTATAATTATCAGT
* * *
4864170 TTCGATGTTTTTTGGATCGATACTTTTTTAAAATGTATCGACACTGTATGCGTGCACCTAGTTTG
318 TTCGATGTTTTTGGGATCGATACTTTTTAAAAATGTATCGACACTGTATGCGTACACCTA-TTTG
*
4864235 GCATTCATTTTGGAC
382 GCATTCATTTTAGAC
* * * * * * *
4864250 AAAAAGTATCGATACAAATTCCACAAGTGTCGATACATTTTGTATATCTATTTTCTCAAACAAAA
1 AAAAAGCATCGACACAAATTCCACAAGTGTCGATACATTATGTAGACCTATTCTCTC--ATAAAA
* *
4864315 CCTGTATATTTATACCAGTTACATTGTAAATTTACCTATTACATTATAATTTTCGGTTTCGATGT
64 -CTGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGT
*
4864380 TTTTGGGATCGATACTTTTTAAACGTGTATCGACACTTTATG
128 TTTTGGGATCGATACTTTTTAAA-ATGTATCGACACTTTATG
4864422 GGAAACTTTA
Statistics
Matches: 497, Mismatches: 60, Indels: 26
0.85 0.10 0.04
Matches are distributed among these distances:
396 19 0.04
397 110 0.22
398 3 0.01
399 20 0.04
400 12 0.02
401 221 0.44
402 34 0.07
403 76 0.15
404 2 0.00
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.39
Consensus pattern (396 bp):
AAAAAGCATCGACACAAATTCCACAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACT
GTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTT
TGGGATCGATACTTTTTAAAATGTATCGACACTTTATGCCTGCACCACTTTGGCATTCAGTCTGG
ACAAAAAGTATCGACAAAAATCTAAAACGTGTCGACACATTATGTTAACCTATTCTCACATAAAA
CCGATAAATTTATACTGGTTACATTACAAAATTAACTATTACATTATAATTATCAGTTTCGATGT
TTTTGGGATCGATACTTTTTAAAAATGTATCGACACTGTATGCGTACACCTATTTGGCATTCATT
TTAGAC
Found at i:4868870 original size:199 final size:200
Alignment explanation
Indices: 4868547--4869671 Score: 1374
Period size: 199 Copynumber: 5.7 Consensus size: 200
4868537 AACAATCGTT
* * * * ** *
4868547 GATACTTTATGCT-GACCTATTTTCTCATAAAA-CGGTATATTTATACCT-ATTACATTGGAAAT
1 GATACATTATG-TAGACCTATTCTCACATAAAACCGGTATATTTATA-CTGGTTACATTACAAAA
** * * *
4868609 TTACCTATTACATTATAATTAACGGTTTCAATGTTTTTGGGATCGACACTTTTTAAAAATGTATC
64 TTACCTATTACATTATAATTATGGGTTTCGATGTTTCTGGGATCGACACTTTTTATAAATGTATC
* * * *
4868674 GACACTTAATGAGTGCACCCTTTT-GGCATTCATTCTGGACAAAAAGTATCGAAACAAATTCCAG
129 GACACTTTATGAGTGCACCATTTTGGGCATTCATTCTGGACAAAAAGTATCGACACAAATTCCAA
*
4868738 AAGTGTA
194 AAGTGTC
* * **
4868745 GATACATTTTCTAGACCTATTCTCGTATAAAACCGGTATATTTATACTGGTTACATTGA-AAAAT
1 GATACATTATGTAGACCTATTCTCACATAAAACCGGTATATTTATACTGGTTACATT-ACAAAAT
* *
4868809 TACCTATTACATTATAATCATGGGTTTCGATGTTTCTGGGATCGATACTTTTTATAAATGTATCG
65 TACCTATTACATTATAATTATGGGTTTCGATGTTTCTGGGATCGACACTTTTTATAAATGTATCG
* *
4868874 ACACTTTATGCA-TGCACCATTTTTTGGGCATTTATTCTGGACAAAATGTATCGACACATAATT-
130 ACACTTTATG-AGTGCACCA--TTTTGGGCATTCATTCTGGACAAAAAGTATCGACACA-AATTC
*
4868937 AAAAAGTGTC
191 CAAAAGTGTC
* *
4868947 GATACATTATGTAGACCTATTCTAACATAAAACCGATATATTTATA-TCGGTTACATTACAAAAT
1 GATACATTATGTAGACCTATTCTCACATAAAACCGGTATATTTATACT-GGTTACATTACAAAAT
* * * *
4869011 TACATATTACATTATAATTATGGG-TTCAATGTCTCTTGGATCGACACTTTTTA-AGAATGTATC
65 TACCTATTACATTATAATTATGGGTTTCGATGTTTCTGGGATCGACACTTTTTATA-AATGTATC
* * * * * * *
4869074 AACACATTATGCGTTCACCATTTTGGGCATTCATTCTGGACAAAAGGTATCGACACCAATTTCAA
129 GACACTTTATGAGTGCACCATTTTGGGCATTCATTCTGGACAAAAAGTATCGACACAAATTCCAA
*
4869139 ATGTGTC
194 AAGTGTC
* *
4869146 GATACATTATGTAGACCTATTATCACATAAAACCGGTATATTTATACAGGTTACATTACAAAATT
1 GATACATTATGTAGACCTATTCTCACATAAAACCGGTATATTTATACTGGTTACATTACAAAATT
* * * *
4869211 ACCTATTACATTTTAATTATGGGTTTCGATGTCTCTGGGATCGACACTTTTAAAAAATGTATCGA
66 ACCTATTACATTATAATTATGGGTTTCGATGTTTCTGGGATCGACACTTTTTATAAATGTATCGA
** * * * *
4869276 CACTTTATTTGTGCACCCTTTTGGGCATTCTTTCTGGACAAACAGTATGGACACAAATT-CAATA
131 CACTTTATGAGTGCACCATTTTGGGCATTCATTCTGGACAAAAAGTATCGACACAAATTCCAA-A
4869340 AGTGTC
195 AGTGTC
4869346 GATACATTATGTAGACCTA-T-T--C-T-AAACCGGTATAGTTT-TA-TCGGTTACATTGA-AAA
1 GATACATTATGTAGACCTATTCTCACATAAAACCGGTATA-TTTATACT-GGTTACATT-ACAAA
* * * *
4869402 GTTACCTATTAAATTATAATTATGGGTTTCGATGTTTCTGGGATCAATACTTTTTATAAATGTAT
63 ATTACCTATTACATTATAATTATGGGTTTCGATGTTTCTGGGATCGACACTTTTTATAAATGTAT
* * * * *
4869467 CAACACTTTATGCGTTCACCATTTTGGG-ATTCATTCTAGACAAAAAGTATCGACACCAATTCCA
128 CGACACTTTATGAGTGCACCATTTTGGGCATTCATTCTGGACAAAAAGTATCGACACAAATTCCA
4869531 AAAGTGTC
193 AAAGTGTC
* * * * *
4869539 AATACATTAAGTAGACCTATTCTCACATAAAACCGGTATATTTATACCGGTTATATTATAAAATT
1 GATACATTATGTAGACCTATTCTCACATAAAACCGGTATATTTATACTGGTTACATTACAAAATT
* *
4869604 ACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGATACTTTTTATAAATGTATCGA
66 ACCTATTACATTATAATTATGGGTTTCGATGTTTCTGGGATCGACACTTTTTATAAATGTATCGA
4869669 CAC
131 CAC
4869672 ATCTGCTTAC
Statistics
Matches: 802, Mismatches: 94, Indels: 61
0.84 0.10 0.06
Matches are distributed among these distances:
193 52 0.06
194 109 0.14
195 6 0.01
196 1 0.00
197 2 0.00
198 36 0.04
199 314 0.39
200 111 0.14
201 55 0.07
202 112 0.14
203 4 0.00
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (200 bp):
GATACATTATGTAGACCTATTCTCACATAAAACCGGTATATTTATACTGGTTACATTACAAAATT
ACCTATTACATTATAATTATGGGTTTCGATGTTTCTGGGATCGACACTTTTTATAAATGTATCGA
CACTTTATGAGTGCACCATTTTGGGCATTCATTCTGGACAAAAAGTATCGACACAAATTCCAAAA
GTGTC
Found at i:4869573 original size:393 final size:397
Alignment explanation
Indices: 4868568--4869671 Score: 1473
Period size: 401 Copynumber: 2.8 Consensus size: 397
4868558 CTGACCTATT
* * ** * * *
4868568 TTCT-CATAAAA-CGGTATATTTATACCTATTACATTGGAAATTTACCTATTACATTATAATTAA
1 TTCTACATAAAACCGATATATTTATATCGGTTACATTGAAAAATTACCTATTACATTATAATTAT
* * * * * * *
4868631 CGGTTTCAATGTTTTTGGGATCGACACTTTTTAAAAATGTATCGACACTTAATGAGTGCACCCTT
66 GGGTTTCAATGTTTCTGGGATCGACACTTTTT-AAAATGTATCAACACTTTATGCGTTCACCATT
* * * * * *
4868696 TTGGCATTCATTCTGGACAAAAAGTATCGAAACAAATTCCAGAAGTGT-AGATACATTTTCTAGA
130 TTGGGATTCATTCTGGACAAAAAGTATCGACACCAATTCCAAAAGTGTCA-ATACATTATGTAGA
** *
4868760 CCTATTCTCGTATAAAACCGGTATATTTATACTGGTTACATTGAAAAATTACCTATTACATTATA
194 CCTATTCTCACATAAAACCGGTATATTTATACAGGTTACATT-AAAAATTACCTATTACATTATA
*
4868825 ATCATGGGTTTCGATGTTTCTGGGATCGATACTTTTTATAAATGTATCGACACTTTATGCATGCA
258 ATTATGGGTTTCGATGTTTCTGGGATCGATACTTTTTATAAATGTATCGACACTTTATGCATGCA
*
4868890 CCATTTTTTGGGCATTTATTCTGGACAAAATGTATCGACACATAATTAAAAAGTGTCGATACATT
323 CCA-CTTTTGGGCATTTATTCTGGACAAAATGTATCGACACATAATTAAAAAGTGTCGATACATT
4868955 ATGTAGACCTA
387 ATGTAGACCTA
*
4868966 TTCTAACATAAAACCGATATATTTATATCGGTTACATT-ACAAAATTACATATTACATTATAATT
1 TTCT-ACATAAAACCGATATATTTATATCGGTTACATTGA-AAAATTACCTATTACATTATAATT
* * *
4869030 ATGGG-TTCAATGTCTCTTGGATCGACACTTTTTAAGAATGTATCAACACATTATGCGTTCACCA
64 ATGGGTTTCAATGTTTCTGGGATCGACACTTTTTAA-AATGTATCAACACTTTATGCGTTCACCA
* * * *
4869094 TTTTGGGCATTCATTCTGGACAAAAGGTATCGACACCAATTTCAAATGTGTCGATACATTATGTA
128 TTTTGGG-ATTCATTCTGGACAAAAAGTATCGACACCAATTCCAAAAGTGTCAATACATTATGTA
* *
4869159 GACCTATTATCACATAAAACCGGTATATTTATACAGGTTACATTACAAAATTACCTATTACATTT
192 GACCTATTCTCACATAAAACCGGTATATTTATACAGGTTACATTA-AAAATTACCTATTACATTA
* * * * ***
4869224 TAATTATGGGTTTCGATGTCTCTGGGATCGACACTTTTAAAAAATGTATCGACACTTTATTTGTG
256 TAATTATGGGTTTCGATGTTTCTGGGATCGATACTTTTTATAAATGTATCGACACTTTATGCATG
* *
4869289 CACC-CTTTTGGGCATTCT-TTCTGGACAAACA-GTATGGACACA-AATTCAATAAGTGTCGATA
321 CACCACTTTTGGGCATT-TATTCTGGACAAA-ATGTATCGACACATAATT-AAAAAGTGTCGATA
4869350 CATTATGTAGACCTA
383 CATTATGTAGACCTA
* * *
4869365 -T-T-C-T-AAACCGGTATAGTTT-TATCGGTTACATTGAAAAGTTACCTATTAAATTATAATTA
1 TTCTACATAAAACCGATATA-TTTATATCGGTTACATTGAAAAATTACCTATTACATTATAATTA
* * *
4869424 TGGGTTTCGATGTTTCTGGGATCAATACTTTTTATAAATGTATCAACACTTTATGCGTTCACCAT
65 TGGGTTTCAATGTTTCTGGGATCGACACTTTTTA-AAATGTATCAACACTTTATGCGTTCACCAT
* *
4869489 TTTGGGATTCATTCTAGACAAAAAGTATCGACACCAATTCCAAAAGTGTCAATACATTAAGTAGA
129 TTTGGGATTCATTCTGGACAAAAAGTATCGACACCAATTCCAAAAGTGTCAATACATTATGTAGA
* *
4869554 CCTATTCTCACATAAAACCGGTATATTTATACCGGTTATATTATAAAATTACCTATTACATTATA
194 CCTATTCTCACATAAAACCGGTATATTTATACAGGTTACATTA-AAAATTACCTATTACATTATA
*
4869619 ATTATGGGTTTCGATGTTTTTGGGATCGATACTTTTTATAAATGTATCGACAC
258 ATTATGGGTTTCGATGTTTCTGGGATCGATACTTTTTATAAATGTATCGACAC
4869672 ATCTGCTTAC
Statistics
Matches: 621, Mismatches: 70, Indels: 35
0.86 0.10 0.05
Matches are distributed among these distances:
393 210 0.34
394 63 0.10
395 2 0.00
397 1 0.00
398 9 0.01
399 62 0.10
400 63 0.10
401 211 0.34
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (397 bp):
TTCTACATAAAACCGATATATTTATATCGGTTACATTGAAAAATTACCTATTACATTATAATTAT
GGGTTTCAATGTTTCTGGGATCGACACTTTTTAAAATGTATCAACACTTTATGCGTTCACCATTT
TGGGATTCATTCTGGACAAAAAGTATCGACACCAATTCCAAAAGTGTCAATACATTATGTAGACC
TATTCTCACATAAAACCGGTATATTTATACAGGTTACATTAAAAATTACCTATTACATTATAATT
ATGGGTTTCGATGTTTCTGGGATCGATACTTTTTATAAATGTATCGACACTTTATGCATGCACCA
CTTTTGGGCATTTATTCTGGACAAAATGTATCGACACATAATTAAAAAGTGTCGATACATTATGT
AGACCTA
Found at i:4870047 original size:19 final size:19
Alignment explanation
Indices: 4870023--4870071 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
4870013 TTACATTCAC
4870023 ATACAAAATTATAAATCGT
1 ATACAAAATTATAAATCGT
*
4870042 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
4870061 ATACAAAATTA
1 ATACAAAATTA
4870072 ACCCTACATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.55, C:0.10, G:0.02, T:0.33
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:4871653 original size:18 final size:18
Alignment explanation
Indices: 4871630--4871665 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
4871620 TCCTCATTTT
4871630 CTCCATCTTTTCTTCTTC
1 CTCCATCTTTTCTTCTTC
4871648 CTCCATCTTTTCTTCTTC
1 CTCCATCTTTTCTTCTTC
4871666 ATATTTTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.06, C:0.39, G:0.00, T:0.56
Consensus pattern (18 bp):
CTCCATCTTTTCTTCTTC
Found at i:4871891 original size:33 final size:33
Alignment explanation
Indices: 4871849--4871948 Score: 155
Period size: 33 Copynumber: 3.0 Consensus size: 33
4871839 CCAACTTAAG
*
4871849 TTCACCCCTCAACACCTCAACTTCTATCACCAC
1 TTCACCCCTCAACACCTCAACTTCTTTCACCAC
** *
4871882 TTCACCCCTCAACACCTCAACTTCTTTTTCCAA
1 TTCACCCCTCAACACCTCAACTTCTTTCACCAC
*
4871915 TTCACCCCTCAACACCTTAACTTCTTTCACCAC
1 TTCACCCCTCAACACCTCAACTTCTTTCACCAC
4871948 T
1 T
4871949 CCATCTATTT
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 59 1.00
ACGTcount: A:0.25, C:0.45, G:0.00, T:0.30
Consensus pattern (33 bp):
TTCACCCCTCAACACCTCAACTTCTTTCACCAC
Found at i:4872107 original size:15 final size:15
Alignment explanation
Indices: 4872087--4872119 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
4872077 ACTCTGTTTT
4872087 CCCTCACAGTCATCC
1 CCCTCACAGTCATCC
*
4872102 CCCTCACCGTCATCC
1 CCCTCACAGTCATCC
4872117 CCC
1 CCC
4872120 AATACAACCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.15, C:0.61, G:0.06, T:0.18
Consensus pattern (15 bp):
CCCTCACAGTCATCC
Found at i:4872426 original size:22 final size:23
Alignment explanation
Indices: 4872398--4872453 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
4872388 AACCTGCATT
*
4872398 TATAATAAAAT-TTATAATTTTA
1 TATAATAAAATACTATAATTTTA
*
4872420 TATAATAACTATACTATAATTTTA
1 TATAATAA-AATACTATAATTTTA
*
4872444 TATAAAAAAA
1 TATAATAAAA
4872454 CAAAAACGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
22 8 0.29
23 3 0.11
24 17 0.61
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.43
Consensus pattern (23 bp):
TATAATAAAATACTATAATTTTA
Found at i:4874703 original size:182 final size:181
Alignment explanation
Indices: 4874396--4875251 Score: 1146
Period size: 182 Copynumber: 4.7 Consensus size: 181
4874386 TACGCGTACT
* * * *
4874396 TATTAAAGTATCGACACTTTAAATATATCTAGTAGT--AT-TTTACCGGTTTTGTCATTTCGAGA
1 TATTAAAGTATCGACACTTTAAATATATCT-G-A-TCCCTCTATACCGGTTTTGTCCTTTAGAGA
* * * * *
4874458 CTGATTTTGTCATATTTTTAGCTTTTATATCATTGTGGACCGATACATTGTTATAAAGTATCGAC
63 CCGGTTTTGTCATATTTTTA-CTGTTATATCGTTGTGGATCGATACATTGTTATAAAGTATCGAC
* *
4874523 ACTTTATAGGCGCTAAAACTACTTCTTTTTTAAATTCACAAAGTGTCGATACTTA
127 ACTTTATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACTTA
* * *
4874578 TATTAAAGTATCGACACTTTAAATATATCTGCTCCCTCTATACCGGTTTTTTCCTTTAGAAACCG
1 TATTAAAGTATCGACACTTTAAATATATCTGATCCCTCTATACCGGTTTTGTCCTTTAGAGACCG
* *
4874643 GTTTTGT-ACTATTTTTACATGTTATATCGTTTTGGATCGATACATTGATATAAAGTATCGACAC
66 GTTTTGTCA-TATTTTTAC-TGTTATATCGTTGTGGATCGATACATTGTTATAAAGTATCGACAC
* *
4874707 TTTATGGGCGCTAAGACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACTTA
129 TTTATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACTTA
* * * **
4874760 TATTAAAGTATCGACACTTTCAATATATCCGATCGCTCTATACCTATTTTGTCCTTTAGAGACCG
1 TATTAAAGTATCGACACTTTAAATATATCTGATCCCTCTATACCGGTTTTGTCCTTTAGAGACCG
* *
4874825 GTTTTGTCATATTTTTATCTGTTATATCGTTGTGGATCGATATATTATTATAAAGTATCGACACT
66 GTTTTGTCATATTTTTA-CTGTTATATCGTTGTGGATCGATACATTGTTATAAAGTATCGACACT
* * * *
4874890 TTATAGGCACTAAAATTGTTTCTCTTTTAAATTCACAAAGTGTCGATACTAA
130 TTATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACTTA
* * *
4874942 TATTAAAGTATCGACACTTTCAATATATCTGGTCGCTCTATACCGGTTTTGTCCTTTAGAGACCG
1 TATTAAAGTATCGACACTTTAAATATATCTGATCCCTCTATACCGGTTTTGTCCTTTAGAGACCG
* *
4875007 GTTTTGTCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTGTTATAAATTATTGACACT
66 GTTTTGTCATATTTTTA-CTGTTATATCGTTGTGGATCGATACATTGTTATAAAGTATCGACACT
** * *
4875072 TTATAGGCTTTGAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACTTG
130 TTATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACTTA
* * * * * * * *
4875124 TATTAAAGTATCGACACTTTTAATATATCCGATACCGCTTTACCGGTTTTATCTTTTCGAGACCG
1 TATTAAAGTATCGACACTTTAAATATATCTGATCCCTCTATACCGGTTTTGTCCTTTAGAGACCG
* * *
4875189 ATTTTGTCATATTTTTAACTGTTATATTGATGTGGATCGATACAGTT-TTATAAAGTATCGACA
66 GTTTTGTCATATTTTT-ACTGTTATATCGTTGTGGATCGATACA-TTGTTATAAAGTATCGACA
4875252 TAAACCGCCA
Statistics
Matches: 598, Mismatches: 67, Indels: 18
0.88 0.10 0.03
Matches are distributed among these distances:
179 1 0.00
181 4 0.01
182 588 0.98
183 5 0.01
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.41
Consensus pattern (181 bp):
TATTAAAGTATCGACACTTTAAATATATCTGATCCCTCTATACCGGTTTTGTCCTTTAGAGACCG
GTTTTGTCATATTTTTACTGTTATATCGTTGTGGATCGATACATTGTTATAAAGTATCGACACTT
TATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACTTA
Found at i:4877579 original size:3 final size:3
Alignment explanation
Indices: 4877573--4877630 Score: 80
Period size: 3 Copynumber: 19.0 Consensus size: 3
4877563 CATCATCATC
* * *
4877573 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AAT CTT ATT TTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
4877621 ATT AATT ATT
1 ATT -ATT ATT
4877631 GCATGCCTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
3 45 0.94
4 3 0.06
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:4879657 original size:130 final size:131
Alignment explanation
Indices: 4879287--4879781 Score: 688
Period size: 131 Copynumber: 3.8 Consensus size: 131
4879277 TCAATTTTGA
* * * *
4879287 AAATAGTAATATCTCTTCGTTTCGGTTGGAGTAATAAATGACTGCTTTAAGGCATGAAAGGTCAT
1 AAATAGTGATATCTCTTCATTTCGATTGGAGTAATAAATGATTGCTTTAAGGCATGAAAGGTCAT
* * * *
4879352 TTATTATCGATTGGAAATAATTAGTTATTACCGTTTTCTCTCGAATCAATATTGATTTTTAAGAC
66 TTATTATCGATTGGAAATAATTAGATATTATCGTTTTCACTCGAATCAATATTGAATTTTAAGAC
4879417 G
131 G
* * *
4879418 GAATAGTGATATCTCTTCATTTCTATTGGAGTAATAAATG-TCTTCTTTAAGGCATGAAAGGTCA
1 AAATAGTGATATCTCTTCATTTCGATTGGAGTAATAAATGAT-TGCTTTAAGGCATGAAAGGTCA
* * *
4879482 TTTATTCTCGATTGGAAATCATTAGATATCATCGTTTTCACTCGAATCAATATTGAATTTTAAGA
65 TTTATTATCGATTGGAAATAATTAGATATTATCGTTTTCACTCGAATCAATATTGAATTTTAAGA
*
4879547 TG
130 CG
* * **
4879549 AAATAGTGATATCTCTTCATTTCGACTGGAGTAATAAA-GATTACTTTAAGGCATGAAATATCAT
1 AAATAGTGATATCTCTTCATTTCGATTGGAGTAATAAATGATTGCTTTAAGGCATGAAAGGTCAT
* * * * * *
4879613 TTATTCTCGATTGTAAATCATTAGATATTATCATTTTCACTCGAATCAATATTGAATTTAAAGGC
66 TTATTATCGATTGGAAATAATTAGATATTATCGTTTTCACTCGAATCAATATTGAATTTTAAGAC
4879678 G
131 G
* * * * *
4879679 AAATAGTGATATCTCTTCATTTCAATTGGAGTAATAAATGATTGCTTTAAGGTATGAGAGGTTAG
1 AAATAGTGATATCTCTTCATTTCGATTGGAGTAATAAATGATTGCTTTAAGGCATGAAAGGTCAT
*
4879744 TTATTATCGATCGGAAATAATTAGATATTATCGTTTTC
66 TTATTATCGATTGGAAATAATTAGATATTATCGTTTTC
4879782 TCTCTTAGAA
Statistics
Matches: 320, Mismatches: 41, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
130 117 0.37
131 203 0.63
ACGTcount: A:0.33, C:0.12, G:0.16, T:0.39
Consensus pattern (131 bp):
AAATAGTGATATCTCTTCATTTCGATTGGAGTAATAAATGATTGCTTTAAGGCATGAAAGGTCAT
TTATTATCGATTGGAAATAATTAGATATTATCGTTTTCACTCGAATCAATATTGAATTTTAAGAC
G
Found at i:4879769 original size:261 final size:262
Alignment explanation
Indices: 4879287--4879781 Score: 706
Period size: 261 Copynumber: 1.9 Consensus size: 262
4879277 TCAATTTTGA
* ** * *
4879287 AAATAGTAATATCTCTTCGTTTCGGTTGGAGTAATAAATGACTGCTTTAAGGCATGAAAGGTCAT
1 AAATAGTAATATCTCTTCATTTCGACTGGAGTAATAAATGACTACTTTAAGGCATGAAAGATCAT
* * * * *
4879352 TTATTATCGATTGGAAATAATTAGTTATTACCGTTTTCTCTCGAATCAATATTGATTTTTAAGAC
66 TTATTATCGATTGGAAATAATTAGATATTACCATTTTCACTCGAATCAATATTGAATTTAAAGAC
* * *
4879417 GGAATAGTGATATCTCTTCATTTCTATTGGAGTAATAAATGTCTTCTTTAAGGCATGAAAGGTCA
131 GAAATAGTGATATCTCTTCATTTCAATTGGAGTAATAAATGTCTGCTTTAAGGCATGAAAGGTCA
* * * *
4879482 TTTATTCTCGATTGGAAATCATTAGATATCATCGTTTTCACTCGAATCAATATTGAATTTTAAGA
196 GTTATTATCGATCGGAAATAATTAGATATCATCGTTTTCACTCGAATCAATATTGAATTTTAAGA
4879547 TG
261 TG
* * *
4879549 AAATAGTGATATCTCTTCATTTCGACTGGAGTAATAAA-GATTACTTTAAGGCATGAAATATCAT
1 AAATAGTAATATCTCTTCATTTCGACTGGAGTAATAAATGACTACTTTAAGGCATGAAAGATCAT
* * * * *
4879613 TTATTCTCGATTGTAAATCATTAGATATTATCATTTTCACTCGAATCAATATTGAATTTAAAGGC
66 TTATTATCGATTGGAAATAATTAGATATTACCATTTTCACTCGAATCAATATTGAATTTAAAGAC
* * *
4879678 GAAATAGTGATATCTCTTCATTTCAATTGGAGTAATAAATGAT-TGCTTTAAGGTATGAGAGGTT
131 GAAATAGTGATATCTCTTCATTTCAATTGGAGTAATAAATG-TCTGCTTTAAGGCATGAAAGGTC
*
4879742 AGTTATTATCGATCGGAAATAATTAGATATTATCGTTTTC
195 AGTTATTATCGATCGGAAATAATTAGATATCATCGTTTTC
4879782 TCTCTTAGAA
Statistics
Matches: 203, Mismatches: 29, Indels: 3
0.86 0.12 0.01
Matches are distributed among these distances:
261 168 0.83
262 35 0.17
ACGTcount: A:0.33, C:0.12, G:0.16, T:0.39
Consensus pattern (262 bp):
AAATAGTAATATCTCTTCATTTCGACTGGAGTAATAAATGACTACTTTAAGGCATGAAAGATCAT
TTATTATCGATTGGAAATAATTAGATATTACCATTTTCACTCGAATCAATATTGAATTTAAAGAC
GAAATAGTGATATCTCTTCATTTCAATTGGAGTAATAAATGTCTGCTTTAAGGCATGAAAGGTCA
GTTATTATCGATCGGAAATAATTAGATATCATCGTTTTCACTCGAATCAATATTGAATTTTAAGA
TG
Found at i:4883302 original size:19 final size:19
Alignment explanation
Indices: 4883280--4883321 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
4883270 AAACATATGC
*
4883280 ATGAGTT-ATATATGTTTAT
1 ATGAGTTGATACATG-TTAT
*
4883299 ATGATTTGATACATGTTAT
1 ATGAGTTGATACATGTTAT
4883318 ATGA
1 ATGA
4883322 TTCATGTGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48
Consensus pattern (19 bp):
ATGAGTTGATACATGTTAT
Found at i:4883582 original size:22 final size:22
Alignment explanation
Indices: 4883557--4883599 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
4883547 AGGGTTATAT
* *
4883557 AAGTCCTTCGGGATATATACAC
1 AAGTCATTCGGGACATATACAC
4883579 AAGTCATTCGGGACATATACA
1 AAGTCATTCGGGACATATACA
4883600 TTGTTCATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.26
Consensus pattern (22 bp):
AAGTCATTCGGGACATATACAC
Found at i:4897514 original size:135 final size:135
Alignment explanation
Indices: 4897346--4900995 Score: 3696
Period size: 135 Copynumber: 27.2 Consensus size: 135
4897336 GTGAATCAAA
* * * *
4897346 CTCGATTCAATATTCCCTAAAGAACAGTTGAATGAATCAACATTTCCAGATCTGATTTTCCTTCA
1 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCA
** * *
4897411 AGAAATAGTGGAACAAAACCCTCTTTTTTCCAGATTTGATCTTCCCCGAGGAACAGTGGAACAAG
66 AGAAGCAGTGGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAAG
*
4897476 TCCGC
131 TCTGC
* * *
4897481 CTCGATTCAATCTTCTCTGAAGAACAGTGGAATGAATCAACATTTCTAGATATGATTTTCCCTCA
1 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCA
* * * * * ** *
4897546 AGAAGTAGTGGAACATATCCTTTTTTTTTCTTCCAAATTTGATCTTTTCTGTGGAACAGTGGAAC
66 AGAAGCAGTGGAACAAATCC--CTCTTTT-TTCCAGATTTGATCTTCCCTGAGGAACAGTGGAAC
4897611 AAGTCTGC
128 AAGTCTGC
* * * * *
4897619 CTCGATTCAATCTTCCCTAAAAGATA-A-TGGAATGAATCAATATATCCAAATCTTATTTTCCCT
1 CTCGATTCAATCTTCCCT-GAAGA-ACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCT
** * * * *
4897682 CAAGAA-CTAGCAGAGCATAT--CTCTTTTTCCCCCCATATTTGATCTTCCCTGAGGAACAGTGG
64 CAAGAAGC-AGTGGAACAAATCCCTCTTTTT---TCCAGATTTGATCTTCCCTGAGGAACAGTGG
* *
4897744 AACTAGTATGC
125 AACAAGTCTGC
* * * * * * *
4897755 TTAGATTCAATCTTCCATGAAGAACAGTGGAATGAATCAACATTTCCAAATCTTAATTTCCCTTA
1 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCA
* *
4897820 AGAAGCAGT-GAAGCATATCCCT-TTTTTT-CAGATTTGATCTTCCCTGAGGAACAATGGAACAA
66 AGAAGCAGTGGAA-CAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAA
*
4897882 GTCTAC
130 GTCTGC
* *
4897888 CTCGATTCAATCTTCCATGAAGAACAGTGGAATGAATCAACATTTCCATATCTGATTTTCCCTCA
1 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCA
* * *
4897953 AGAAGCAACT-GAACAGATCCATCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAA
66 AGAAGC-AGTGGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAA
* *
4898017 GCCCGC
130 GTCTGC
* * *
4898023 CTCGATTCAATCTTCCATGAAGAACAGTGGAATGAATCAATATTTCTAGATCTGATTTTCCCTCA
1 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCA
* *
4898088 AGAAGCAACT-GAACAGATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAA
66 AGAAGC-AGTGGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAA
* *
4898152 GCCCGC
130 GTCTGC
* * * * * * *
4898158 ATCGATTAAATCTTACCTAAAGAACAATGAAATG-ATTAACATTTCCAGATCTGATTTTCCCTCA
1 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCA
* * * *
4898222 ATAAGCAGCGGAATAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTAAGGAACAGTGGAACAAG
66 AGAAGCAGTGGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAAG
*
4898287 TCAGC
131 TCTGC
4898292 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCA
1 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCA
** *** * * *
4898357 AGAAATAGCAAAAGAGAT-CC-CTTTTTTCCAGATTTGATCTTCCCTGAGGAATAGTGGAACAAG
66 AGAAGCAGTGGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAAG
*
4898420 TCCGC
131 TCTGC
* * * * *
4898425 CTCGATTAAATCTTCCCTGAAGAATAGTGGAATGAATCAACATTTCTAGATTTGATTTTCCCTTA
1 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCA
* ** * *
4898490 AGAAACAACGGAACAAATCCCAT-TTTTTT-CATATTTGATCTTCCCT--------GTGGAATAA
66 AGAAGCAGTGGAACAAATCCC-TCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAA
*
4898545 GTATGC
130 GTCTGC
* ** * * * * * * *
4898551 CTAGATTCAAT-TTTTCTTAGAGAACAATGGAATGAACCAATATTT-CATGATATGATTTTTCGT
1 CTCGATTCAATCTTCCCTGA-AGAACAGTGGAATGAATCAACATTTCCA-GATCTGATTTTCCCT
** * *
4898614 CAAGAAGCTCTAGAATAAATCCCTCTTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAAC
64 CAAGAAGCAGTGGAACAAATCCCTC-TTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAAC
*
4898679 AAGTCTCC
128 AAGTCTGC
* * *
4898687 CTCGATTCAATCTTCCCAGAAGAACAATAGAATGAATCAACATTTCCAGATCTGATTTTCCCTCA
1 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCA
* * * * *
4898752 AGAAGTAGTGGAA-AATAT-CC-CTTTTTTCCATATTTGATCTT-CTTCGAGGAACAGTAGAAGA
66 AGAAGCAGTGGAACAA-ATCCCTCTTTTTTCCAGATTTGATCTTCCCT-GAGGAACAGTGGAACA
4898813 AGTCTGC
129 AGTCTGC
* * * ** * *
4898820 CTCGATTCAATCTTCCCTAAAGAACAGTCGAATGAATCAAAATTTTTAGATTTGATTTTCCCTTA
1 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCA
* * * * ** * *
4898885 AGAAGCAGCGGAACAGATCCCTCTTTTTTCCAGATTTGATCTTCCTTGATGATTAGTTGAACAAT
66 AGAAGCAGTGGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAAG
*
4898950 TCTAC
131 TCTGC
* * * * * * *
4898955 CTCAATTGAATCTTTCAC-GAAGAACTGTGGAATGAATCAACATATCCAAATCTTATTTTCCCTC
1 CTCGATTCAATC-TTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTC
* ** * * *
4899019 AAGAAACAGCAGAGCATAT--CTCTTTTTTCCCATATATTTGATCTTCCCTGAGGAACAGTGGAA
65 AAGAAGCAGTGGAACAAATCCCTCTTTTTT-CC--AGATTTGATCTTCCCTGAGGAACAGTGGAA
*
4899082 CAAGTATGC
127 CAAGTCTGC
* * * * * * *
4899091 CTAGATTCAATCTTCCATGAAGAATAGTGGAATGAATCAACATTTCCAGATATTAATTTCCCTTA
1 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCA
* * * *
4899156 AGAAGCAG-CGAAGCATATCCCT-TTTTTT-CATATTTGATCTTCCCTGAGGAATAGTGGAACAA
66 AGAAGCAGTGGAA-CAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAA
4899218 GTCTGC
130 GTCTGC
* * *
4899224 CTCGATTCAATCTTCCATGAAGAACAGTGGAATGAATCAGCATTTCCAGATCTGAATTTCCCTCA
1 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCA
* * *
4899289 AGAAGCAACT-AAACAAATCCCTC-TTTTTCCAGATTTGATCTTCCATGAGGAACAGTGGAACAA
66 AGAAGC-AGTGGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAA
*
4899352 GCCCT-C
130 G-TCTGC
* * * **
4899358 CTCGATTCAATCTTCCCTGAAGAACAATAGAATGAATTAATGTTTCCAGATCTGATTTTCCCTCA
1 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCA
* * * *
4899423 AGAAGCAGTGAAATAAATCCCTC-TTTTTCCAGATTTGATCTTCCTTGAGGAACAGTGGACCAAG
66 AGAAGCAGTGGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAAG
*
4899487 TCCT-T
131 T-CTGC
* * * * * * * * *
4899492 CTCAAGTCAATATTCCTTGAATAACAGTAGAATGAATCGACATTTCCATATCTAATTTTCCCTCA
1 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCA
* * * *
4899557 AGAAGCAGCGGAATAAATCCCT-TTTTTT-CAGATTTGATCTTCCCTAAGGAATAGTGGAACAAG
66 AGAAGCAGTGGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAAG
**
4899620 TCAAC
131 TCTGC
* * * * *
4899625 CTCGATTCATTCATCCCTGAAGAACTA-TGAAATGAATCAACATTTCTAGATCTGATCTTCCCTC
1 CTCGATTCAATCTTCCCTGAAGAAC-AGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTC
** *** * * * * * * *
4899689 AAGAAATAGCAAAAGAGAT-CC-CGTTTTTGCATATTTGATCTTCCCTGAGGAATAGTGGAATAA
65 AAGAAGCAGTGGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAA
4899752 GTCTGC
130 GTCTGC
* * * *
4899758 CTCGATTAAATCTT-CCTGAAGAACAGTGGAATGAATCAACATTTCTAGATTTGATTTTCCCTTA
1 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCA
* * *
4899822 AGAAGAAGTAGAAACAAATCCCTCTTTTTTCCACATTTGATCTTCCCT--------GTGGAACAA
66 AGAAGCAGT-GGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAA
*
4899879 GTATGC
130 GTCTGC
* * * * * * *
4899885 CTAGATTCATTTTTTCCTGAAGAACAGTGGAATGAACCAACATTTCCAGATCTGATTTATTCGTC
1 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTT-TCCCTC
** * * * * * *
4899950 AAGAAGTTGTGGAATAGATCTCTATTTTTTTCCAGATTTGATATTCCATGAGGAACAGTGGAACA
65 AAGAAGCAGTGGAACAAATCCCT-CTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACA
*
4900015 AGTCTCC
129 AGTCTGC
* * * * ** * *
4900022 CTCGATTAAATCTTCCCTAAAGAATATTATAATTAATCAACATTTCCAGATCTGATTTTCCTTCA
1 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCA
* * * *
4900087 AGAAGTAGTGGAACAAATCCCT-TTTTTCCCACATTTGATCATCTCC-GAGGAATCAGTGGAACA
66 AGAAGCAGTGGAACAAATCCCTCTTTTTTCCAGATTTGATCTTC-CCTGAGGAA-CAGTGGAACA
*
4900150 TGTCTGC
129 AGTCTGC
* * * * * * * *
4900157 CTCGATTCAATCTTCCTTAAATAACAGTTGAATGAATCAAGATTTCCATATTTGATTTTCCCTTA
1 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCA
** * * *
4900222 AGAAGCAGCAGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGAAACAGTGCAATAAG
66 AGAAGCAGTGGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAAG
*
4900287 TCTAC
131 TCTGC
* * * * *
4900292 CTCAATTCAATCTTTCATGAAGAACAGTGGAATGAATCAACATTTCCAGATCTTATTTTCTCTCA
1 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCA
** * * *
4900357 AGAAGCAGTGGAGTAAAT--CTCTTTTTTCCCCATATTTGATCTTCCTTGAGGAGCAGTGGAACA
66 AGAAGCAGTGGAACAAATCCCTCTTTTTT--CCAGATTTGATCTTCCCTGAGGAACAGTGGAACA
4900420 AGTCTGC
129 AGTCTGC
* * * * *
4900427 CTAGATTCAATCTTCCATGAAGAATAGTGGAATGAATCAACATTTCTAGATCTAATTTTCCCTCA
1 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCA
* * * * * * * *
4900492 AGATGTACTGGAACAAATCCCTCTTTTTTCCAGATTTTATTTTCCCCGATGAATAGTGGAACAAG
66 AGAAGCAGTGGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAAG
4900557 TCTGC
131 TCTGC
* * * *
4900562 CTCGAGTCAATCTTCTCTGAAGAACAGTGGAATGAATCAACATTTCTAGATCTGATTTTCTCTCA
1 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCA
* * ** * * *
4900627 AGAAGTTA-TGAAACATGTCCCTC-TTTTTCCAGATTTGATCTTCCCTAAGAAACAGTGGAAGAA
66 AGAAG-CAGTGGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAA
**
4900690 GTCCAC
130 GTCTGC
* * * *
4900696 CTCGATTCAATATTCCCTGAAGAAAAGTTGAATGAATCAACATTTCCAGATCTGATTTTCCTTCA
1 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCA
* * * * *
4900761 AGAAGCAGCGAAACAAATCCCTCTTTTTT-TAGATTTGATCTTTCCTGATGAACAGTGGAACAAG
66 AGAAGCAGTGGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAAG
4900825 TCTGC
131 TCTGC
* * * *
4900830 CTCAATTCAATCTTCCCTGAAGAACAATGGAATGAATCAATATTTCCAGTTCTGATTTTCCCTCA
1 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCA
* * * * * * * * * ** * *
4900895 AGAAACAGCGAAACATATCCTTTTTTTTTCCAGAATTGATATTCCCTAAGGAATTGTGGAATAAC
66 AGAAGCAGTGGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAAG
*
4900960 TTTGC
131 TCTGC
* *
4900965 CTCAATTCAAGCTTCCCTGAAGAACAGTGGA
1 CTCGATTCAATCTTCCCTGAAGAACAGTGGA
4900996 TTAAGTCAAG
Statistics
Matches: 2923, Mismatches: 501, Indels: 182
0.81 0.14 0.05
Matches are distributed among these distances:
125 7 0.00
126 70 0.02
127 29 0.01
128 65 0.02
129 32 0.01
131 1 0.00
132 60 0.02
133 615 0.21
134 638 0.22
135 896 0.31
136 310 0.11
137 91 0.03
138 103 0.04
139 5 0.00
140 1 0.00
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (135 bp):
CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCA
AGAAGCAGTGGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAAG
TCTGC
Found at i:4898276 original size:404 final size:403
Alignment explanation
Indices: 4897346--4900995 Score: 3576
Period size: 404 Copynumber: 9.1 Consensus size: 403
4897336 GTGAATCAAA
* * * *
4897346 CTCGATTCAATATTCCCTAAAGAACAGTTGAATGAATCAACATTTCCAGATCTGATTTTCCTTCA
1 CTCGATTCAATCTT-CCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCA
** * * *
4897411 AGAAATAGTGGAACAAAACCCTCTTTTTTCCAGATTTGATCTTCCCCGAGGAACAGTGGAACAAG
65 AGAAGCAGCGGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAAG
** * *
4897476 TCCGCCTCGATTCAATCTTCTC-TGAAGAACAGTGGAATGAATCAACATTTCTAGATATGATTTT
130 TCTACCTCGATTCAATCTTC-CATGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTT
* * * * * ** *
4897540 CCCTCAAGAAG-TAGTGGAACATATCCTTTTTTTTTCTTCCAAATTTGATCTTTTCTGTGGAACA
194 CCCTCAAGAAGCAACT-GAACAAATCC---TCTTTT-TTCCAGATTTGATCTTCCCTGAGGAACA
* * * *
4897604 GTGGAACAAGTCTGCCTCGATTCAATCTTCCCTAAAAGATA-A-TGGAATGAATCAATATATCCA
254 GTGGAACAAGTCTGCCTCGATTCAATCTTCCCT-GAAGA-ACAGTGGAATGAATCAACATTTCTA
* * * * * * * *
4897667 AATCTTATTTTCCCTCAAGAA-CTAGCAGAGCATAT--CTCTTTTTCCCCCCATATTTGATCTTC
317 GATCTGATTTTCCCTCAAGAAGC-AACTGAACAAATCCCTCTTTTT---TCCAGATTTGATCTTC
* *
4897729 CCTGAGGAACAGTGGAACTAGTATGC
378 CCTGAGGAACAGTGGAACAAGTCTGC
* * * * * *
4897755 TTAGATTCAATCTTCCATGAAGAACAGTGGAATGAATCAACATTTCCAAATCTTAATTTCCCTTA
1 CTCGATTCAATCTTCC-TGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCA
* * *
4897820 AGAAGCAG-TGAAGCATATCCCT-TTTTTT-CAGATTTGATCTTCCCTGAGGAACAATGGAACAA
65 AGAAGCAGCGGAA-CAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAA
*
4897882 GTCTACCTCGATTCAATCTTCCATGAAGAACAGTGGAATGAATCAACATTTCCATATCTGATTTT
129 GTCTACCTCGATTCAATCTTCCATGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTT
*
4897947 CCCTCAAGAAGCAACTGAACAGATCCATCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGG
194 CCCTCAAGAAGCAACTGAACAAATCC-TCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGG
* * * *
4898012 AACAAGCCCGCCTCGATTCAATCTTCCATGAAGAACAGTGGAATGAATCAATATTTCTAGATCTG
258 AACAAGTCTGCCTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCTAGATCTG
*
4898077 ATTTTCCCTCAAGAAGCAACTGAACAGATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAAC
323 ATTTTCCCTCAAGAAGCAACTGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAAC
* *
4898142 AGTGGAACAAGCCCGC
388 AGTGGAACAAGTCTGC
* * * * * *
4898158 ATCGATTAAATCTTACCTAAAGAACAATGAAATG-ATTAACATTTCCAGATCTGATTTTCCCTCA
1 CTCGATTCAATCTT-CCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCA
* * *
4898222 ATAAGCAGCGGAATAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTAAGGAACAGTGGAACAAG
65 AGAAGCAGCGGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAAG
*
4898287 TC-AGCCTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTT
130 TCTA-CCTCGATTCAATCTTCCATGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTT
** * ** * * *
4898351 CCCTCAAGAAATAGCAAAAGAGATCC-CTTTTTTCCAGATTTGATCTTCCCTGAGGAATAGTGGA
194 CCCTCAAGAAGCAACTGAACAAATCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGA
* * * *
4898415 ACAAGTCCGCCTCGATTAAATCTTCCCTGAAGAATAGTGGAATGAATCAACATTTCTAGATTTGA
259 ACAAGTCTGCCTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCTAGATCTGA
* * * *
4898480 TTTTCCCTTAAGAAACAACGGAACAAATCCCAT-TTTTTT-CATATTTGATCTTCCCT-------
324 TTTTCCCTCAAGAAGCAACTGAACAAATCCC-TCTTTTTTCCAGATTTGATCTTCCCTGAGGAAC
* *
4898536 -GTGGAATAAGTATGC
388 AGTGGAACAAGTCTGC
* * * * * * * * * *
4898551 CTAGATTCAATTTTTCTTAGAGAACAATGGAATGAACCAATATTT-CATGATATGATTTTTCGTC
1 CTCGATTCAATCTTCCTGA-AGAACAGTGGAATGAATCAACATTTCCA-GATCTGATTTTCCCTC
* * *
4898615 AAGAAGC-TCTAGAATAAATCCCTCTTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAAC
64 AAGAAGCAGC-GGAACAAATCCCTC-TTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAAC
* * *
4898679 AAGTCTCCCTCGATTCAATCTTCCCA-GAAGAACAATAGAATGAATCAACATTTCCAGATCTGAT
127 AAGTCTACCTCGATTCAATCTT-CCATGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGAT
* * * *
4898743 TTTCCCTCAAGAAG-TAGTGGAA-AATATCC-CTTTTTTCCATATTTGATCTT-CTTCGAGGAAC
191 TTTCCCTCAAGAAGCAACT-GAACAA-ATCCTCTTTTTTCCAGATTTGATCTTCCCT-GAGGAAC
* * * * * *
4898804 AGTAGAAGAAGTCTGCCTCGATTCAATCTTCCCTAAAGAACAGTCGAATGAATCAAAATTTTTAG
253 AGTGGAACAAGTCTGCCTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCTAG
* * * * * *
4898869 ATTTGATTTTCCCTTAAGAAGCAGCGGAACAGATCCCTCTTTTTTCCAGATTTGATCTTCCTTGA
318 ATCTGATTTTCCCTCAAGAAGCAACTGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGA
* ** * * *
4898934 TGATTAGTTGAACAATTCTAC
383 GGAACAGTGGAACAAGTCTGC
* * * * * *
4898955 CTCAATTGAATCTTTCAC-GAAGAACTGTGGAATGAATCAACATATCCAAATCTTATTTTCCCTC
1 CTCGATTCAATC-TTC-CTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTC
* * * * *
4899019 AAGAAACAGCAGAGCATAT--CTCTTTTTTCCCATATATTTGATCTTCCCTGAGGAACAGTGGAA
64 AAGAAGCAGCGGAACAAATCCCTCTTTTTT-CC--AGATTTGATCTTCCCTGAGGAACAGTGGAA
* * * * * * *
4899082 CAAGTATGCCTAGATTCAATCTTCCATGAAGAATAGTGGAATGAATCAACATTTCCAGATATTAA
126 CAAGTCTACCTCGATTCAATCTTCCATGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGAT
* * * * * *
4899147 TTTCCCTTAAGAAGCAGC-GAAGCATATCC-CTTTTTTTCATATTTGATCTTCCCTGAGGAATAG
191 TTTCCCTCAAGAAGCAACTGAA-CAAATCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAG
* * *
4899210 TGGAACAAGTCTGCCTCGATTCAATCTTCCATGAAGAACAGTGGAATGAATCAGCATTTCCAGAT
255 TGGAACAAGTCTGCCTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCTAGAT
* * *
4899275 CTGAATTTCCCTCAAGAAGCAACTAAACAAATCCCTC-TTTTTCCAGATTTGATCTTCCATGAGG
320 CTGATTTTCCCTCAAGAAGCAACTGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGG
*
4899339 AACAGTGGAACAAGCCCT-C
385 AACAGTGGAACAAG-TCTGC
* * * **
4899358 CTCGATTCAATCTTCCCTGAAGAACAATAGAATGAATTAATGTTTCCAGATCTGATTTTCCCTCA
1 CTCGATTCAATCTT-CCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCA
* * * * *
4899423 AGAAGCAGTGAAATAAATCCCTC-TTTTTCCAGATTTGATCTTCCTTGAGGAACAGTGGACCAAG
65 AGAAGCAGCGGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAAG
* * * * * * * * * *
4899487 TCCT-TCTCAAGTCAATATTCCTTGAATAACAGTAGAATGAATCGACATTTCCATATCTAATTTT
130 T-CTACCTCGATTCAATCTTCCATGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTT
* * * * * *
4899551 CCCTCAAGAAGCAGCGGAATAAATCC-CTTTTTTTCAGATTTGATCTTCCCTAAGGAATAGTGGA
194 CCCTCAAGAAGCAACTGAACAAATCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGA
** * * *
4899615 ACAAGTCAACCTCGATTCATTCATCCCTGAAGAACTA-TGAAATGAATCAACATTTCTAGATCTG
259 ACAAGTCTGCCTCGATTCAATCTTCCCTGAAGAAC-AGTGGAATGAATCAACATTTCTAGATCTG
* ** * ** * * * * * *
4899679 ATCTTCCCTCAAGAAATAGCAAAAGAGAT-CC-CGTTTTTGCATATTTGATCTTCCCTGAGGAAT
323 ATTTTCCCTCAAGAAGCAACTGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAAC
*
4899742 AGTGGAATAAGTCTGC
388 AGTGGAACAAGTCTGC
* * * *
4899758 CTCGATTAAATCTTCCTGAAGAACAGTGGAATGAATCAACATTTCTAGATTTGATTTTCCCTTAA
1 CTCGATTCAATCTTCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCAA
* * * *
4899823 GAAGAAGTAGAAACAAATCCCTCTTTTTTCCACATTTGATCTTCCCT--------GTGGAACAAG
66 GAAGCAG-CGGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAAG
* * * * * *
4899880 TATGCCTAGATTCATTTTTTCC-TGAAGAACAGTGGAATGAACCAACATTTCCAGATCTGATTTA
130 TCTACCTCGATTCA-ATCTTCCATGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTT-
* * *** * * * * *
4899944 TTCGTCAAGAAG-TTGTGGAATAGATCTCTATTTTTTTCCAGATTTGATATTCCATGAGGAACAG
193 TCCCTCAAGAAGCAACT-GAACAAATC-CT-CTTTTTTCCAGATTTGATCTTCCCTGAGGAACAG
* * * * * ** * *
4900008 TGGAACAAGTCTCCCTCGATTAAATCTTCCCTAAAGAATATTATAATTAATCAACATTTCCAGAT
255 TGGAACAAGTCTGCCTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCTAGAT
* * * * * *
4900073 CTGATTTTCCTTCAAGAAG-TAGTGGAACAAATCCCT-TTTTTCCCACATTTGATCATCTCC-GA
320 CTGATTTTCCCTCAAGAAGCAACT-GAACAAATCCCTCTTTTTTCCAGATTTGATCTTC-CCTGA
*
4900135 GGAATCAGTGGAACATGTCTGC
383 GGAA-CAGTGGAACAAGTCTGC
* * * * * * *
4900157 CTCGATTCAATCTTCCTTAAATAACAGTTGAATGAATCAAGATTTCCATATTTGATTTTCCCTTA
1 CTCGATTCAATCTTCC-TGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCA
* * * *
4900222 AGAAGCAGCAGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGAAACAGTGCAATAAG
65 AGAAGCAGCGGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAAG
* * *
4900287 TCTACCTCAATTCAATCTTTCATGAAGAACAGTGGAATGAATCAACATTTCCAGATCTTATTTTC
130 TCTACCTCGATTCAATCTTCCATGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTC
* * ** * * *
4900352 TCTCAAGAAGC-AGTGGAGTAAAT-CTCTTTTTTCCCCATATTTGATCTTCCTTGAGGAGCAGTG
195 CCTCAAGAAGCAACT-GAACAAATCCTCTTTTTT--CCAGATTTGATCTTCCCTGAGGAACAGTG
* * *
4900415 GAACAAGTCTGCCTAGATTCAATCTTCCATGAAGAATAGTGGAATGAATCAACATTTCTAGATCT
257 GAACAAGTCTGCCTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCTAGATCT
* * * * * * *
4900480 AATTTTCCCTCAAGATG-TACTGGAACAAATCCCTCTTTTTTCCAGATTTTATTTTCCCCGATGA
322 GATTTTCCCTCAAGAAGCAACT-GAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGA
*
4900544 ATAGTGGAACAAGTCTGC
386 ACAGTGGAACAAGTCTGC
* * *
4900562 CTCGAGTCAATCTTCTCTGAAGAACAGTGGAATGAATCAACATTTCTAGATCTGATTTTCTCTCA
1 CTCGATTCAATCTTC-CTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCA
* * * ** * * *
4900627 AGAAGTTA-TGAAACATGTCCCTC-TTTTTCCAGATTTGATCTTCCCTAAGAAACAGTGGAAGAA
65 AGAAG-CAGCGGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAA
* * * * *
4900690 GTCCACCTCGATTCAATATTCCCTGAAGAAAAGTTGAATGAATCAACATTTCCAGATCTGATTTT
129 GTCTACCTCGATTCAATCTTCCATGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTT
* * * * *
4900755 CCTTCAAGAAGCAGC-GAAACAAATCCCTCTTTTTT-TAGATTTGATCTTTCCTGATGAACAGTG
194 CCCTCAAGAAGCAACTG-AACAAAT-CCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTG
* * * * *
4900818 GAACAAGTCTGCCTCAATTCAATCTTCCCTGAAGAACAATGGAATGAATCAATATTTCCAGTTCT
257 GAACAAGTCTGCCTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCTAGATCT
* * * * * * * *
4900883 GATTTTCCCTCAAGAAACAGC-GAAACATATCCTTTTTTTTTCCAGAATTGATATTCCCTAAGGA
322 GATTTTCCCTCAAGAAGCAACTG-AACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGA
** * * *
4900947 ATTGTGGAATAACTTTGC
386 ACAGTGGAACAAGTCTGC
* *
4900965 CTCAATTCAAGCTTCCCTGAAGAACAGTGGA
1 CTCGATTCAATCTT-CCTGAAGAACAGTGGA
4900996 TTAAGTCAAG
Statistics
Matches: 2686, Mismatches: 459, Indels: 198
0.80 0.14 0.06
Matches are distributed among these distances:
392 4 0.00
393 88 0.03
394 66 0.02
395 236 0.09
396 18 0.01
397 101 0.04
398 24 0.01
399 118 0.04
400 114 0.04
401 251 0.09
402 183 0.07
403 353 0.13
404 608 0.23
405 213 0.08
406 64 0.02
407 167 0.06
408 13 0.00
409 65 0.02
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (403 bp):
CTCGATTCAATCTTCCTGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCCCTCAA
GAAGCAGCGGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAACAAGT
CTACCTCGATTCAATCTTCCATGAAGAACAGTGGAATGAATCAACATTTCCAGATCTGATTTTCC
CTCAAGAAGCAACTGAACAAATCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGTGGAAC
AAGTCTGCCTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATTTCTAGATCTGATT
TTCCCTCAAGAAGCAACTGAACAAATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAACAGT
GGAACAAGTCTGC
Found at i:4902986 original size:31 final size:31
Alignment explanation
Indices: 4902942--4903000 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
4902932 TTATAATTCA
4902942 CATAACTTATATCACATAG-GCATGTAATCT
1 CATAACTTATATCACATAGCGCATGTAATCT
* *
4902972 CATAGCTTATTATCACATAGCTCATGTAA
1 CATAACTTA-TATCACATAGCGCATGTAA
4903001 CATTCTCATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 8 0.32
31 10 0.40
32 7 0.28
ACGTcount: A:0.36, C:0.20, G:0.10, T:0.34
Consensus pattern (31 bp):
CATAACTTATATCACATAGCGCATGTAATCT
Found at i:4911692 original size:28 final size:26
Alignment explanation
Indices: 4911622--4911695 Score: 71
Period size: 29 Copynumber: 2.7 Consensus size: 26
4911612 GAACTATAAT
*
4911622 CTAT-TTTTATTTAATTTAATTTGGC
1 CTATGTTTTATTTATTTTAATTTGGC
4911647 C-ATGCAATTTTATTTTATTTTAATTTGGTCC
1 CTATG---TTTTA-TTTATTTTAATTTGG--C
4911678 CTATGTTTTATTTATTTT
1 CTATGTTTTATTTATTTT
4911696 TATTATTTGT
Statistics
Matches: 40, Mismatches: 1, Indels: 13
0.74 0.02 0.24
Matches are distributed among these distances:
24 2 0.05
25 1 0.03
28 13 0.32
29 19 0.47
31 2 0.05
32 3 0.08
ACGTcount: A:0.22, C:0.09, G:0.08, T:0.61
Consensus pattern (26 bp):
CTATGTTTTATTTATTTTAATTTGGC
Found at i:4912499 original size:131 final size:128
Alignment explanation
Indices: 4912300--4912788 Score: 601
Period size: 131 Copynumber: 3.8 Consensus size: 128
4912290 CGATTTTGAA
* * * * *
4912300 AATAGT-ATTATCTCTTAATTTTGGTTGGAGTAATAAATGACTGCTTTAAGGAATAAGAGGTCAT
1 AATAGTGA-TATCTCTTCATTTCGATTGGAGTAATAAATGACTGCTTTAAGGCATGAGAGGTCAT
* * * *
4912364 TTATTCTCGATTGGAAATAACTAGATATTACCGTTTTCTA-TCGAAACAATATTTATTTTTAAGA
65 TTATTCTCGATTGGAAATAATTAGATATTATCGTTTTC-ACTCGAATCAATATTGA-TTTTAAGA
4912428 CGG
128 --G
* *
4912431 AATAGTGATATCTCTTCATTTCGATCGGAGTAATAAATGACTGCTTTAAGGCATGAGAGGTTATT
1 AATAGTGATATCTCTTCATTTCGATTGGAGTAATAAATGACTGCTTTAAGGCATGAGAGGTCATT
* *
4912496 TATTCTCGATTGGAAATCATTAGATATTAACGTTTTCACTCGAATCAATATTGAATTTTAAGATG
66 TATTCTCGATTGGAAATAATTAGATATTATCGTTTTCACTCGAATCAATATTG-ATTTTAAGA-G
* *
4912561 AAATAGTGATATCTCTTCATTTCGATTGGAGTAATAAATGATTGCTTTAAGGTATGAGAGGTCAT
1 -AATAGTGATATCTCTTCATTTCGATTGGAGTAATAAATGACTGCTTTAAGGCATGAGAGGTCAT
* * * * *
4912626 TTATTCTCAATTGGAAATAATTATATATTATCATTTTCACTCGAATCAATATTGA--ATATGA-
65 TTATTCTCGATTGGAAATAATTAGATATTATCGTTTTCACTCGAATCAATATTGATTTTAAGAG
* ** * * * * *
4912687 AATAGTGATATATCTTCATTTCGATTAAAGTAATAAATGATTACTTTAAGGCAAGAGATGTCAGT
1 AATAGTGATATCTCTTCATTTCGATTGGAGTAATAAATGACTGCTTTAAGGCATGAGAGGTCATT
**
4912752 TATTCTCGATCAGAAATAATTAGATATTATCGTTTTC
66 TATTCTCGATTGGAAATAATTAGATATTATCGTTTTC
4912789 CCTCTTAGAA
Statistics
Matches: 317, Mismatches: 37, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
125 89 0.28
128 4 0.01
130 3 0.01
131 219 0.69
132 2 0.01
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (128 bp):
AATAGTGATATCTCTTCATTTCGATTGGAGTAATAAATGACTGCTTTAAGGCATGAGAGGTCATT
TATTCTCGATTGGAAATAATTAGATATTATCGTTTTCACTCGAATCAATATTGATTTTAAGAG
Found at i:4915197 original size:20 final size:20
Alignment explanation
Indices: 4915159--4915197 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
4915149 CCGCTTTGGC
* *
4915159 CAAAGGAAAAGAGACTGCTG
1 CAAAAGAAAAGAAACTGCTG
*
4915179 CAAAAGAAAAGAAAGTGCT
1 CAAAAGAAAAGAAACTGCT
4915198 AGATGAAAAC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.51, C:0.13, G:0.26, T:0.10
Consensus pattern (20 bp):
CAAAAGAAAAGAAACTGCTG
Found at i:4916124 original size:65 final size:64
Alignment explanation
Indices: 4915964--4916150 Score: 218
Period size: 65 Copynumber: 2.9 Consensus size: 64
4915954 TTGCCCGTTG
* *
4915964 TATCCTTAGTGCATCGGTGCACTAAG-AGTGCATCGATGCATCAAGTGCATTCAATG-TTTCAAA
1 TATCCTCAGTGCATCGGTGCA-T-GGTAGTGCATCGATGCATCAAGTGCATTCAATGTTTTCAAA
4916027 A
64 A
* ** * * *
4916028 TAGCCAGAGTGCATCGATGCATGGCTAGTGCATTGATGCATCAAGTGCATTCGATGTTTTCATAA
1 TATCCTCAGTGCATCGGTGCATGG-TAGTGCATCGATGCATCAAGTGCATTCAATGTTTTCA-AA
4916093 A
64 A
* *
4916094 -ATCCTCAGTGCATCGGTGCATGGTATGTGCATCGATGCATGAAATGCATTCAATGTT
1 TATCCTCAGTGCATCGGTGCATGGTA-GTGCATCGATGCATCAAGTGCATTCAATGTT
4916151 CAATTTAATT
Statistics
Matches: 103, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
62 1 0.01
63 1 0.01
64 47 0.46
65 51 0.50
66 3 0.03
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.30
Consensus pattern (64 bp):
TATCCTCAGTGCATCGGTGCATGGTAGTGCATCGATGCATCAAGTGCATTCAATGTTTTCAAAA
Found at i:4924795 original size:57 final size:56
Alignment explanation
Indices: 4924677--4924785 Score: 148
Period size: 57 Copynumber: 1.9 Consensus size: 56
4924667 AGTGCATCGA
* *
4924677 TGCATCAAGTGCATTCGATGTTTCAAAATAGCCAGAGTGCATCGATGCATGGCTGG
1 TGCATCAAATGCATTCGATGTTTCAAAATAGCCACAGTGCATCGATGCATGGCTGG
* * *
4924733 TGCATCAAATGCATTCGATGTTTTCATAAA-ATCCTCAGTGCATCGGTGCATGG
1 TGCATCAAATGCATTCGATG-TTTCA-AAATAGCCACAGTGCATCGATGCATGG
4924786 TATGTGCATC
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
56 19 0.41
57 24 0.52
58 3 0.07
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (56 bp):
TGCATCAAATGCATTCGATGTTTCAAAATAGCCACAGTGCATCGATGCATGGCTGG
Found at i:4924801 original size:56 final size:55
Alignment explanation
Indices: 4924677--4924802 Score: 139
Period size: 57 Copynumber: 2.2 Consensus size: 55
4924667 AGTGCATCGA
*
4924677 TGCATCAAGTGCATTCGATGTTTCAAAATAGCCAGAGTGCATCGATGCATGGCTGG
1 TGCATCAA-TGCATTCGATGTTTCAAAATAGCCACAGTGCATCGATGCATGGCTGG
* * * *
4924733 TGCATCAAATGCATTCGATGTTTTCATAAA-ATCCTCAGTGCATCGGTGCATGG-TATG
1 TGCATC-AATGCATTCGATG-TTTCA-AAATAGCCACAGTGCATCGATGCATGGCT-GG
*
4924790 TGCATCGATGCAT
1 TGCATCAATGCAT
4924803 GAAATGCATT
Statistics
Matches: 60, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
56 24 0.40
57 33 0.55
58 3 0.05
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (55 bp):
TGCATCAATGCATTCGATGTTTCAAAATAGCCACAGTGCATCGATGCATGGCTGG
Found at i:4926503 original size:3 final size:3
Alignment explanation
Indices: 4926495--4926520 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
4926485 AATTAATCAA
4926495 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
4926521 CGGACCAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:4927875 original size:2 final size:2
Alignment explanation
Indices: 4927868--4927900 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
4927858 CGTCCCAAAC
4927868 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4927901 CACATCTCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4928087 original size:29 final size:29
Alignment explanation
Indices: 4928053--4928147 Score: 77
Period size: 29 Copynumber: 3.2 Consensus size: 29
4928043 AGATGGTTAT
4928053 AGTTTAGGGATGAAATTAGAATGTTCAAA
1 AGTTTAGGGATGAAATTAGAATGTTCAAA
** * * *
4928082 AGTTTAATGACT-AATTTAGAATGAGAGTC-AT
1 AGTTTAGGGA-TGAAATTAGAAT--G-TTCAAA
* *
4928113 AGTTTGGGGATGAAATTAGAATATTCAAA
1 AGTTTAGGGATGAAATTAGAATGTTCAAA
4928142 AGTTTA
1 AGTTTA
4928148 AGGACCAATT
Statistics
Matches: 47, Mismatches: 13, Indels: 12
0.65 0.18 0.17
Matches are distributed among these distances:
28 2 0.04
29 23 0.49
30 2 0.04
31 18 0.38
32 2 0.04
ACGTcount: A:0.40, C:0.04, G:0.22, T:0.34
Consensus pattern (29 bp):
AGTTTAGGGATGAAATTAGAATGTTCAAA
Found at i:4928094 original size:60 final size:59
Alignment explanation
Indices: 4928013--4928182 Score: 216
Period size: 60 Copynumber: 2.8 Consensus size: 59
4928003 TGAAACTCGG
* ** *
4928013 ATATTCAAATGTTTGGGGACTAATTTAGAAAGATGGTTATAGTTTAGGGATGAAATTAGA
1 ATATTCAAAAGTTTAAGGACTAATTTAGAAAGA-GGTTATAGTTTGGGGATGAAATTAGA
* * * *
4928073 ATGTTCAAAAGTTTAATGACTAATTTAGAATGAGAGTCATAGTTTGGGGATGAAATTAGA
1 ATATTCAAAAGTTTAAGGACTAATTTAGAAAGAG-GTTATAGTTTGGGGATGAAATTAGA
*
4928133 ATATTCAAAAGTTTAAGGACCAATTTA-AAATGAGGGTTATAGTTTGGGGA
1 ATATTCAAAAGTTTAAGGACTAATTTAGAAA-GA-GGTTATAGTTTGGGGA
4928183 CATATGATGC
Statistics
Matches: 94, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
59 3 0.03
60 90 0.96
61 1 0.01
ACGTcount: A:0.38, C:0.05, G:0.24, T:0.34
Consensus pattern (59 bp):
ATATTCAAAAGTTTAAGGACTAATTTAGAAAGAGGTTATAGTTTGGGGATGAAATTAGA
Found at i:4944499 original size:42 final size:42
Alignment explanation
Indices: 4944442--4944531 Score: 112
Period size: 42 Copynumber: 2.1 Consensus size: 42
4944432 CGGAACTGAA
*
4944442 TTTTCTTCTTCTCAAA-TCTGTTATGCCCACAGAATTGAACTT
1 TTTTCTTCTTCTCAAATTC-GTTATGCCCACAGAATAGAACTT
* **
4944484 CTTTT-TTCTTGTCAAATTCGTTATGCCCATGGAATAGAACTT
1 -TTTTCTTCTTCTCAAATTCGTTATGCCCACAGAATAGAACTT
4944526 TTTTCT
1 TTTTCT
4944532 ACTCCCGAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
41 4 0.10
42 31 0.76
43 6 0.15
ACGTcount: A:0.22, C:0.21, G:0.11, T:0.46
Consensus pattern (42 bp):
TTTTCTTCTTCTCAAATTCGTTATGCCCACAGAATAGAACTT
Found at i:4957036 original size:19 final size:19
Alignment explanation
Indices: 4957012--4957083 Score: 58
Period size: 19 Copynumber: 3.8 Consensus size: 19
4957002 CTGAAGAAAC
*
4957012 AAAAAAAAGGAAAAAATGA
1 AAAAAAAAGAAAAAAATGA
* *
4957031 AAAAAACATAAAAAAATGA
1 AAAAAAAAGAAAAAAATGA
* **
4957050 AATGAAAAA-AATGAAATG-
1 AA-AAAAAAGAAAAAAATGA
*
4957068 AAAAAAATGAAAAAAA
1 AAAAAAAAGAAAAAAA
4957084 AAATAAAAGG
Statistics
Matches: 40, Mismatches: 11, Indels: 5
0.71 0.20 0.09
Matches are distributed among these distances:
17 4 0.10
18 7 0.17
19 25 0.62
20 4 0.10
ACGTcount: A:0.78, C:0.01, G:0.11, T:0.10
Consensus pattern (19 bp):
AAAAAAAAGAAAAAAATGA
Found at i:4957059 original size:14 final size:14
Alignment explanation
Indices: 4957040--4957087 Score: 82
Period size: 14 Copynumber: 3.6 Consensus size: 14
4957030 AAAAAAACAT
4957040 AAAAAAATGAAATG
1 AAAAAAATGAAATG
4957054 AAAAAAATGAAATG
1 AAAAAAATGAAATG
4957068 AAAAAAATGAAA--
1 AAAAAAATGAAATG
4957080 AAAAAAAT
1 AAAAAAAT
4957088 AAAAGGGGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.24
14 26 0.76
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.12
Consensus pattern (14 bp):
AAAAAAATGAAATG
Found at i:4957061 original size:9 final size:9
Alignment explanation
Indices: 4957012--4957083 Score: 51
Period size: 9 Copynumber: 7.8 Consensus size: 9
4957002 CTGAAGAAAC
*
4957012 AAAAAAAAG
1 AAAAAAATG
*
4957021 GAAAAAATG
1 AAAAAAATG
4957030 AAAAAAACAT-
1 -AAAAAA-ATG
4957040 AAAAAAATG
1 AAAAAAATG
4957049 AAATGAAAA--
1 AAA--AAAATG
*
4957058 AAATGAAATG
1 AAA-AAAATG
4957068 AAAAAAATG
1 AAAAAAATG
4957077 AAAAAAA
1 AAAAAAA
4957084 AAATAAAAGG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
8 5 0.10
9 31 0.62
10 8 0.16
11 6 0.12
ACGTcount: A:0.78, C:0.01, G:0.11, T:0.10
Consensus pattern (9 bp):
AAAAAAATG
Found at i:4958380 original size:133 final size:131
Alignment explanation
Indices: 4958168--4958605 Score: 398
Period size: 133 Copynumber: 3.3 Consensus size: 131
4958158 ATCTACCTCG
* * * ** *
4958168 ATTCAATCTTCCTTGAAGAATAGTTGAATGAGCCAATGTCTCCAGATCTTATTTTCCTTGAAGAA
1 ATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAATGTCT-CAGAT-TTATTTTCCCTGAAGAA
* * * ** *
4958233 ACAGCGAAACAGATCCCCTCTTTCCATATTTGACCTTCCTTGAGTAGTAGTGGAACAAGTTTG-G
64 ACAGCGAAACAGATCCCCTCTTTCCAGATTTGACCTTCCCTGAGTAGCAGTAAAACAAGTCTGCG
4958297 TTTA
129 -TTA
* * * *
4958301 ATTCAACCTTCCCTGAAGAACAGTGGAATGAATTAACGTCTCAAGATTTATTTTTCCCTGAATAA
1 ATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAATGTCTC-AGATTTA-TTTTCCCTGAAGAA
* * * * *
4958366 GCAGTGAAATAGATCCCCTCTTTCCAGATTTGATCTTCCCTGAGTAGCGGTAAAACAAGTCTGCG
64 ACAGCGAAACAGATCCCCTCTTTCCAGATTTGACCTTCCCTGAGTAGCAGTAAAACAAGTCTGCG
*
4958431 TTG
129 TTA
* *
4958434 ATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAATGTCTTCAGATCTAATTTTCCCTAAAGAA
1 ATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAATGTC-TCAGAT-TTATTTTCCCTGAAGAA
** * * * * * * ** * *
4958499 TTAGCGGAACAAAT---CTTTTTCTAGATTTGATCTTCCTTGAGTAGCAGTGGAACAAGTCTACC
64 ACAGCGAAACAGATCCCCTCTTTCCAGATTTGACCTTCCCTGAGTAGCAGTAAAACAAGTCTGCG
**
4958561 TCG
129 TTA
* ** * *
4958564 ATTCAATTTTTTCTGAAGAACAGCGGAATGAATCAACGTCTC
1 ATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAATGTCTC
4958606 CAAGTCTGAT
Statistics
Matches: 252, Mismatches: 48, Indels: 14
0.80 0.15 0.04
Matches are distributed among these distances:
129 2 0.01
130 77 0.31
132 4 0.02
133 164 0.65
134 5 0.02
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (131 bp):
ATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAATGTCTCAGATTTATTTTCCCTGAAGAAAC
AGCGAAACAGATCCCCTCTTTCCAGATTTGACCTTCCCTGAGTAGCAGTAAAACAAGTCTGCGTT
A
Found at i:4958645 original size:263 final size:264
Alignment explanation
Indices: 4958167--4958662 Score: 579
Period size: 263 Copynumber: 1.9 Consensus size: 264
4958157 AATCTACCTC
* * * * * * *
4958167 GATTCAATCTTCCTTGAAGAATAGTTGAATGAGCCAATGTCTCCAGATCTTATTTTCCTTGAAGA
1 GATTCAATCTTCCCTGAAGAACAGTGGAATGAACCAATGTCTCCAGATCTAATTTTCCCTAAAGA
* * * * **
4958232 AACAGCGAAACAGATCCCCTCTTTCCATATTTGACCTTCCTTGAGTAGTAGTGGAACAAGTTTGG
66 AACAGCGAAACAAAT--CCTCTTTCCAGATTTGACCTTCCTTGAGTAGCAGTGGAACAAGTCTAC
* * * * *
4958297 TTTAATTCAACCTTCCCTGAAGAACAGTGGAATGAATTAACGTCTCAAGATTTATTTTTCCCTGA
129 CTCAATTCAACCTTCCCTGAAGAACAGCGGAATGAATCAACGTCTCAAGATTGATTTTTCCCTGA
*
4958362 ATAAGCAGTGAAATAGATCCCCTCTTTCCAGATTTGATCTTCCCTGAGTAGCGGTAAAACAAGTC
194 ATAAGCAGTGAAACAGATCCCCTCTTTCCAGATTTGATCTTCCCTGAGTAGCGGTAAAACAAGTC
4958427 TGCGTT
259 TGCGTT
* *
4958433 GATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAATGTCTTCAGATCTAATTTTCCCTAAAGA
1 GATTCAATCTTCCCTGAAGAACAGTGGAATGAACCAATGTCTCCAGATCTAATTTTCCCTAAAGA
** * * * *
4958498 ATTAGCGGAACAAAT-CTTTTTCTAGATTTGATCTTCCTTGAGTAGCAGTGGAACAAGTCTACCT
66 AACAGCGAAACAAATCCTCTTTCCAGATTTGACCTTCCTTGAGTAGCAGTGGAACAAGTCTACCT
* ** **
4958562 CGATTCAATTTTTTCTGAAGAACAGCGGAATGAATCAACGTCTCCAAG-TCTGATTTTT-CCTGA
131 CAATTCAACCTTCCCTGAAGAACAGCGGAATGAATCAACGTCT-CAAGAT-TGATTTTTCCCTGA
* * **
4958625 AGT-AGCTGCTG-AACAGATCCCCTTTTTCTTGATTTGAT
194 A-TAAGCAG-TGAAACAGATCCCCTCTTTCCAGATTTGAT
4958663 ATACCCTAAC
Statistics
Matches: 190, Mismatches: 36, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
263 109 0.57
264 14 0.07
266 67 0.35
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.33
Consensus pattern (264 bp):
GATTCAATCTTCCCTGAAGAACAGTGGAATGAACCAATGTCTCCAGATCTAATTTTCCCTAAAGA
AACAGCGAAACAAATCCTCTTTCCAGATTTGACCTTCCTTGAGTAGCAGTGGAACAAGTCTACCT
CAATTCAACCTTCCCTGAAGAACAGCGGAATGAATCAACGTCTCAAGATTGATTTTTCCCTGAAT
AAGCAGTGAAACAGATCCCCTCTTTCCAGATTTGATCTTCCCTGAGTAGCGGTAAAACAAGTCTG
CGTT
Found at i:4958888 original size:3 final size:3
Alignment explanation
Indices: 4958880--4959024 Score: 272
Period size: 3 Copynumber: 48.0 Consensus size: 3
4958870 TTATCCCAAC
4958880 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
4958928 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
4958976 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AATT ATT TTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT
4959022 ATT
1 ATT
4959025 GTATGCCTTT
Statistics
Matches: 139, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
3 136 0.98
4 3 0.02
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:4961358 original size:131 final size:131
Alignment explanation
Indices: 4961123--4961375 Score: 389
Period size: 131 Copynumber: 1.9 Consensus size: 131
4961113 TCAGATATTA
* * * *
4961123 TCGAATCAATATTGAATTTTAAGATGAAATAGTGATATCTCTTCATTTCGATTGGAGTAATAAAC
1 TCGAATCAATATTGAATTTTAAGACGAAATAGTGATATCTCTTCATTTCAATCGGAGTAAGAAAC
* *
4961188 AACTACTTTAAGGCACGAGAGGTCATTTATTCTCGATTGGAAATAATTAGATATTATTGTTTTCT
66 AACTACTTTAAGGCACGAGAGGTCAATTATTCTCAATTGGAAATAATTAGATATTATTGTTTTCT
4961253 C
131 C
* *
4961254 TCGAATTAATATTGAATTTTAAGACGAAATAGTGATATCTCTTCATTTCAATCGGAGTAAGAAAT
1 TCGAATCAATATTGAATTTTAAGACGAAATAGTGATATCTCTTCATTTCAATCGGAGTAAGAAAC
* * * * *
4961319 GACTTCTTTAAGGCATGAGAGGTTAATTATTTTCAATTGGAAATAATTAGATATTAT
66 AACTACTTTAAGGCACGAGAGGTCAATTATTCTCAATTGGAAATAATTAGATATTAT
4961376 CATTTTCATT
Statistics
Matches: 109, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
131 109 1.00
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.38
Consensus pattern (131 bp):
TCGAATCAATATTGAATTTTAAGACGAAATAGTGATATCTCTTCATTTCAATCGGAGTAAGAAAC
AACTACTTTAAGGCACGAGAGGTCAATTATTCTCAATTGGAAATAATTAGATATTATTGTTTTCT
C
Found at i:4962081 original size:48 final size:48
Alignment explanation
Indices: 4962010--4962150 Score: 275
Period size: 48 Copynumber: 3.0 Consensus size: 48
4962000 CCTATAACAT
4962010 ATCACTAAACAATGAGAAATTCTTATATAATTTGGGTTGAATTGAGTC
1 ATCACTAAACAATGAGAAATTCTTATATAATTTGGGTTGAATTGAGTC
4962058 ATCACTAAACAATGAGAAATTCTTATATAATTTGGGTTGAATTGAGTC
1 ATCACTAAACAATGAGAAATTCTTATATAATTTGGGTTGAATTGAGTC
4962106 ATCACTAAACAATGAGAAATTCTTATATAA-TTGGGTTGAATTGAG
1 ATCACTAAACAATGAGAAATTCTTATATAATTTGGGTTGAATTGAG
4962151 ATCGAGACAT
Statistics
Matches: 93, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
47 15 0.16
48 78 0.84
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.35
Consensus pattern (48 bp):
ATCACTAAACAATGAGAAATTCTTATATAATTTGGGTTGAATTGAGTC
Found at i:4965273 original size:19 final size:19
Alignment explanation
Indices: 4965251--4965296 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
4965241 TATTTTCTGA
4965251 AATTTTTAA-ATTTTTATAT
1 AATTTTTAATATTTTTAT-T
*
4965270 AA-TTTAAATATTTTTATT
1 AATTTTTAATATTTTTATT
4965288 ATATTTTTA
1 A-ATTTTTA
4965297 TGTTGATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
18 7 0.32
19 11 0.50
20 4 0.18
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (19 bp):
AATTTTTAATATTTTTATT
Found at i:4966311 original size:24 final size:23
Alignment explanation
Indices: 4966273--4966320 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
4966263 TTTATTCTAA
* *
4966273 AATAAAAAATTAAAAGTCAAAAT
1 AATAAAAAAATAAAAATCAAAAT
*
4966296 AATAAAAAAATAAAAATCAAGAT
1 AATAAAAAAATAAAAATCAAAAT
4966319 AA
1 AA
4966321 CTATTTAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.19
Consensus pattern (23 bp):
AATAAAAAAATAAAAATCAAAAT
Found at i:4971414 original size:13 final size:13
Alignment explanation
Indices: 4971396--4971420 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4971386 AGCAATTCAA
4971396 CCATAATTTAAAC
1 CCATAATTTAAAC
4971409 CCATAATTTAAA
1 CCATAATTTAAA
4971421 TCACTGCGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.32
Consensus pattern (13 bp):
CCATAATTTAAAC
Found at i:4972226 original size:24 final size:24
Alignment explanation
Indices: 4972199--4972245 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
4972189 AAACGAACGT
*
4972199 TAAATGAACACATGCGCAAACATA
1 TAAAGGAACACATGCGCAAACATA
* * *
4972223 TAAAGGAATACATTCTCAAACAT
1 TAAAGGAACACATGCGCAAACAT
4972246 TGAACGAACA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.49, C:0.19, G:0.11, T:0.21
Consensus pattern (24 bp):
TAAAGGAACACATGCGCAAACATA
Found at i:4972974 original size:23 final size:23
Alignment explanation
Indices: 4972948--4973012 Score: 121
Period size: 23 Copynumber: 2.8 Consensus size: 23
4972938 ATCAAGCATA
*
4972948 ATAACGTATTAGGTAGCGCTTAT
1 ATAACGTAATAGGTAGCGCTTAT
4972971 ATAACGTAATAGGTAGCGCTTAT
1 ATAACGTAATAGGTAGCGCTTAT
4972994 ATAACGTAATAGGTAGCGC
1 ATAACGTAATAGGTAGCGC
4973013 CTTTTTTAAG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (23 bp):
ATAACGTAATAGGTAGCGCTTAT
Found at i:4978348 original size:24 final size:24
Alignment explanation
Indices: 4978329--4978384 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
4978319 CAAAATTTAT
4978329 ATTGAAATTCAAACTCAAATTGAA
1 ATTGAAATTCAAACTCAAATTGAA
* * *
4978353 ATTTAAATTCAAACTCCAATTAAA
1 ATTGAAATTCAAACTCAAATTGAA
*
4978377 AATGAAAT
1 ATTGAAAT
4978385 GAACATGAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.52, C:0.12, G:0.05, T:0.30
Consensus pattern (24 bp):
ATTGAAATTCAAACTCAAATTGAA
Found at i:4978352 original size:18 final size:18
Alignment explanation
Indices: 4978329--4978365 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
4978319 CAAAATTTAT
4978329 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
4978347 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
4978365 A
1 A
4978366 CTCCAATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:4978778 original size:30 final size:30
Alignment explanation
Indices: 4978742--4978813 Score: 126
Period size: 30 Copynumber: 2.4 Consensus size: 30
4978732 GAATGAAAAT
*
4978742 ATACACACAATATAAGTAAACCAAACATAC
1 ATACACACAATATAAGTAAACAAAACATAC
4978772 ATACACACAATATAAGTAAACAAAACATAC
1 ATACACACAATATAAGTAAACAAAACATAC
4978802 ATACACAACAAT
1 ATACAC-ACAAT
4978814 TTTATACATA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
30 35 0.88
31 5 0.12
ACGTcount: A:0.58, C:0.22, G:0.03, T:0.17
Consensus pattern (30 bp):
ATACACACAATATAAGTAAACAAAACATAC
Found at i:4980724 original size:14 final size:15
Alignment explanation
Indices: 4980700--4980728 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
4980690 ATGACATGCG
4980700 TATTAATTCTTATTA
1 TATTAATTCTTATTA
4980715 TATT-ATTCTTATTA
1 TATTAATTCTTATTA
4980729 GGCTCATGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (15 bp):
TATTAATTCTTATTA
Found at i:4981007 original size:18 final size:19
Alignment explanation
Indices: 4980984--4981079 Score: 82
Period size: 18 Copynumber: 5.3 Consensus size: 19
4980974 TGATTTGGTC
4980984 AGAAGAAGAGCTTG-GTTG
1 AGAAGAAGAGCTTGCGTTG
*
4981002 AGAAGAA-TG-TTGTCGTTG
1 AGAAGAAGAGCTTG-CGTTG
* *
4981020 AGAAGAAG-GC-TGACATTT
1 AGAAGAAGAGCTTG-CGTTG
4981038 AGAAGAAGAGCTTG-GTTG
1 AGAAGAAGAGCTTGCGTTG
4981056 AGAAGAAG-G-TTGTCGTTG
1 AGAAGAAGAGCTTG-CGTTG
4981074 AGAAGA
1 AGAAGA
4981080 CCCGTGCCTC
Statistics
Matches: 64, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
16 6 0.09
17 2 0.03
18 52 0.81
19 2 0.03
20 2 0.03
ACGTcount: A:0.34, C:0.06, G:0.35, T:0.24
Consensus pattern (19 bp):
AGAAGAAGAGCTTGCGTTG
Found at i:4981494 original size:19 final size:20
Alignment explanation
Indices: 4981458--4981496 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
4981448 TACCGGTTAT
*
4981458 ATTGTAAATTTACGTATTAC
1 ATTGTAAATTTACCTATTAC
4981478 ATTGTAAA-TTACCTATTAC
1 ATTGTAAATTTACCTATTAC
4981497 TTTATAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.36, C:0.13, G:0.08, T:0.44
Consensus pattern (20 bp):
ATTGTAAATTTACCTATTAC
Found at i:4981830 original size:200 final size:200
Alignment explanation
Indices: 4981473--4982550 Score: 1716
Period size: 200 Copynumber: 5.4 Consensus size: 200
4981463 AAATTTACGT
4981473 ATTACATTGTAAA-TTACCTATTACTTTATAATAATC-GTTTCGATGTTCTGAGGATCGATACTT
1 ATTACATTGTAAATTTACCTATTACTTTATAATAATCGGTTTCGATGTTCTGAGGATCGATACTT
* *
4981536 ATAATAAATGTATCGACACTTTATGCATGCATCTCGTTTGGCATTCATTCTGGACAAAAAACATC
66 ATAATAAATGTATCGACACTTTATGCTTGCATCTCGTTTGGCATTCATTCTGGACAAAAAATATC
**
4981601 GATACAATTTAAAAAAGTATCGCTACATTATGTTTACCTATTCTCTCATTAAACTGGTATATTTT
131 GATACAATTTAAAAAAGTATCGCTACATTATGTTTACCTATTCTCTCATTAAACCAGTATATTTT
4981666 TACCG
196 TACCG
*
4981671 ATTACATTGTAAGTTTACCTATTACTTTATAATAATCGGTTTCGATGTTCTGAGGATCGATACTT
1 ATTACATTGTAAATTTACCTATTACTTTATAATAATCGGTTTCGATGTTCTGAGGATCGATACTT
*
4981736 ATAATAAATGTATCGACACTTTATGCTTGCATCTCGTTTGACATTCATTCTGGACAAAAAATATC
66 ATAATAAATGTATCGACACTTTATGCTTGCATCTCGTTTGGCATTCATTCTGGACAAAAAATATC
* * *
4981801 GATACAATTTAAAAAAGTATCGATACATTATGTTTACCTATTCTCTCATTAGACCGGTATATTTT
131 GATACAATTTAAAAAAGTATCGCTACATTATGTTTACCTATTCTCTCATTAAACCAGTATATTTT
*
4981866 TATCG
196 TACCG
*
4981871 ATTACATTGTAAATTTACCTATTACTTTATAATAATCGGTTTCGATGTTCTGGGGATCGATACTT
1 ATTACATTGTAAATTTACCTATTACTTTATAATAATCGGTTTCGATGTTCTGAGGATCGATACTT
*
4981936 ATAATAAATGTATCGACACTTTATG-TGTGCATCTCGTTTGGCATTCATTCTGGACAAAAAATAG
66 ATAATAAATGTATCGACACTTTATGCT-TGCATCTCGTTTGGCATTCATTCTGGACAAAAAATAT
4982000 CGATACAATTTAAAAAAGTATCGCTACATTATGTTTACCTATTCTCTCATTAAACCAGTATATTT
130 CGATACAATTTAAAAAAGTATCGCTACATTATGTTTACCTATTCTCTCATTAAACCAGTATATTT
4982065 TTACCG
195 TTACCG
* *
4982071 GTTACATTGTAAATTTACCTATTACTTTATAATAATCGATTTCGATGTTCTGAGGATCGATACTT
1 ATTACATTGTAAATTTACCTATTACTTTATAATAATCGGTTTCGATGTTCTGAGGATCGATACTT
* * ** * ** **
4982136 ATAATAAATGTATTGACACTTTATGCGTGCATCTAATTTGGCATTCATTATGGACAAAATGTAGA
66 ATAATAAATGTATCGACACTTTATGCTTGCATCTCGTTTGGCATTCATTCTGGACAAAAAATATC
*
4982201 GATACAATTTAAAAAAGTATCGCTACATTATGTTTACCTATTCTCTCATTAAACCAATATATTTT
131 GATACAATTTAAAAAAGTATCGCTACATTATGTTTACCTATTCTCTCATTAAACCAGTATATTTT
4982266 TACCG
196 TACCG
* *
4982271 GTTACTTTGTAAATTTACCTATTACTTTATAATAATCGGTTTCGATGTTCTGAGGATCGATACTT
1 ATTACATTGTAAATTTACCTATTACTTTATAATAATCGGTTTCGATGTTCTGAGGATCGATACTT
* * *
4982336 ACAATAAATGTATCGACACTTTATG-TGTGCATCTCGTTTGACATTCATTCTGGACAAAAAGTAT
66 ATAATAAATGTATCGACACTTTATGCT-TGCATCTCGTTTGGCATTCATTCTGGACAAAAAATAT
*
4982400 CGATACAATTTAAAAAAAGTATCGATACATTATGTTTACCTATTCTCTCATTAAACCAGTATATT
130 CGATACAATTT-AAAAAAGTATCGCTACATTATGTTTACCTATTCTCTCATTAAACCAGTATATT
**
4982465 TTTATGG
194 TTTACCG
* * * * * * * *
4982472 GTTACACTGCAAATTTACCTATTACTTTATAATTATCGATTTTGATGTTTTTG-GGATCAATACT
1 ATTACATTGTAAATTTACCTATTACTTTATAATAATCGGTTTCGATG-TTCTGAGGATCGATACT
*
4982536 TATAATACATGTATC
65 TATAATAAATGTATC
4982551 AATACCTCTG
Statistics
Matches: 819, Mismatches: 54, Indels: 11
0.93 0.06 0.01
Matches are distributed among these distances:
198 12 0.01
199 24 0.03
200 659 0.80
201 120 0.15
202 4 0.00
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (200 bp):
ATTACATTGTAAATTTACCTATTACTTTATAATAATCGGTTTCGATGTTCTGAGGATCGATACTT
ATAATAAATGTATCGACACTTTATGCTTGCATCTCGTTTGGCATTCATTCTGGACAAAAAATATC
GATACAATTTAAAAAAGTATCGCTACATTATGTTTACCTATTCTCTCATTAAACCAGTATATTTT
TACCG
Found at i:4988183 original size:2 final size:2
Alignment explanation
Indices: 4988176--4988204 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
4988166 AATTGATTAA
4988176 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4988205 GCTTAAGCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4990855 original size:90 final size:90
Alignment explanation
Indices: 4990702--4990868 Score: 289
Period size: 90 Copynumber: 1.9 Consensus size: 90
4990692 CCTAACACAC
* * * *
4990702 CCTTTTATAGCCAAGTTACCCTAGTCATATTAGGGTTTTTATTATTTCAAATTAATTAAATCTAT
1 CCTTTTATAGCCAAGTTACCCTAATCATATCAGGGATTTTATTATTTAAAATTAATTAAATCTAT
4990767 ATTTAATTAATTGGAATTTAATAAT
66 ATTTAATTAATTGGAATTTAATAAT
*
4990792 CCTTTTATATCCAAGTTACCCTAATCATATCAGGGATTTTATTATTTAAAATTAATTAAATCTAT
1 CCTTTTATAGCCAAGTTACCCTAATCATATCAGGGATTTTATTATTTAAAATTAATTAAATCTAT
4990857 ATTTAATTAATT
66 ATTTAATTAATT
4990869 AAAATTAAAT
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
90 72 1.00
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.46
Consensus pattern (90 bp):
CCTTTTATAGCCAAGTTACCCTAATCATATCAGGGATTTTATTATTTAAAATTAATTAAATCTAT
ATTTAATTAATTGGAATTTAATAAT
Found at i:4995760 original size:22 final size:21
Alignment explanation
Indices: 4995718--4995757 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
4995708 GAGTTTATTT
*
4995718 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
4995739 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
4995758 ACAATTTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:4998979 original size:13 final size:13
Alignment explanation
Indices: 4998961--4998991 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
4998951 CTATGCCTTT
*
4998961 GATATTTTAACCG
1 GATATTTTAACCA
4998974 GATATTTTAACCA
1 GATATTTTAACCA
4998987 GATAT
1 GATAT
4998992 GTTATTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (13 bp):
GATATTTTAACCA
Found at i:4999353 original size:183 final size:181
Alignment explanation
Indices: 4999100--4999588 Score: 631
Period size: 184 Copynumber: 2.7 Consensus size: 181
4999090 ATTTATTAAA
* * * * * *
4999100 GTATCGATACATTCAACATATCTGGTAGCGCTTTACCGGTTTTGTCATAATGAAACCGGTTTTAT
1 GTATCGATACCTTCAACATATC-AGTAGCTCTTTACCGGTTTTGTCATATTGAACCCGGTTTTGT
* * *
4999165 CATATTTTTACCTGTTATATTGTTATGTATAGATACATGTTTATAAAGTATCGATAC-TTTATAG
65 CATATTTTTACCTGATATATTGTTATGTATCGATACATATTT-TAAAGTATCGATACTTTTATAG
*
4999229 GCGCTATTACTGCTTTTCTTTTAATTTCCAAAAGTATCGATACTTATTTGAAT
129 GCGCTATTACTGCTTTTCTTTTAAATTCCAAAAGTATCGATACTTATTTGAAT
* * * *
4999282 GGTATCGATACCTTAAACATATTCAGTAGCTCTTCACCGGTTTTGTAATATTGAACCCGATTTTG
1 -GTATCGATACCTTCAACATA-TCAGTAGCTCTTTACCGGTTTTGTCATATTGAACCCGGTTTTG
* * ***
4999347 TCATATTTTTACATGATAAATTGTTATGTATCGATACATATTTTTAAAGTAAAAATACTTTTATA
64 TCATATTTTTACCTGATATATTGTTATGTATCGATACATA-TTTTAAAGTATCGATACTTTTATA
* *
4999412 GGCGCTATTATTTCTTTTCTTTTAAATTCCAAAAGTATCGATACTTATTTGAAT
128 GGCGCTATTACTGCTTTTCTTTTAAATTCCAAAAGTATCGATACTTATTTGAAT
* * * ** *
4999466 GAAACTGATACCTTCAACATATCCGATAG-TGCTTTACTTGTTTTTTCATATTGAACCCGGTTTT
1 GTATC-GATACCTTCAACATATCAG-TAGCT-CTTTACCGGTTTTGTCATATTGAACCCGGTTTT
*
4999530 GTCATATTTTCACCTGATATATTGTTATGTATCGATACATATTTTAATAGTATCGATAC
63 GTCATATTTTTACCTGATATATTGTTATGTATCGATACATATTTTAA-AGTATCGATAC
4999589 GTACCGACAA
Statistics
Matches: 262, Mismatches: 37, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
183 110 0.42
184 152 0.58
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.43
Consensus pattern (181 bp):
GTATCGATACCTTCAACATATCAGTAGCTCTTTACCGGTTTTGTCATATTGAACCCGGTTTTGTC
ATATTTTTACCTGATATATTGTTATGTATCGATACATATTTTAAAGTATCGATACTTTTATAGGC
GCTATTACTGCTTTTCTTTTAAATTCCAAAAGTATCGATACTTATTTGAAT
Found at i:5000224 original size:27 final size:28
Alignment explanation
Indices: 5000174--5000231 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 28
5000164 AGGGGTGCAC
5000174 AAAAAATCCGAATATCCGATTTTGCGAA
1 AAAAAATCCGAATATCCGATTTTGCGAA
* *
5000202 AAAAATATCCGAA-ATCGGA-TTTGGGAA
1 AAAAA-ATCCGAATATCCGATTTTGCGAA
5000229 AAA
1 AAA
5000232 CCGGTTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 10 0.37
28 10 0.37
29 7 0.26
ACGTcount: A:0.47, C:0.14, G:0.17, T:0.22
Consensus pattern (28 bp):
AAAAAATCCGAATATCCGATTTTGCGAA
Found at i:5000279 original size:13 final size:13
Alignment explanation
Indices: 5000261--5000285 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5000251 ATCGGATTTT
5000261 TTTTAACCGGTTA
1 TTTTAACCGGTTA
5000274 TTTTAACCGGTT
1 TTTTAACCGGTT
5000286 TGGAGAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.16, G:0.16, T:0.48
Consensus pattern (13 bp):
TTTTAACCGGTTA
Found at i:5002699 original size:21 final size:21
Alignment explanation
Indices: 5002675--5002716 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
5002665 AGTTTATTTT
5002675 TAAACTTTATTTCAATTATCG
1 TAAACTTTATTTCAATTATCG
*
5002696 TAAACTTTGTTTCAATTATCG
1 TAAACTTTATTTCAATTATCG
5002717 AACTTGAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.14, G:0.07, T:0.48
Consensus pattern (21 bp):
TAAACTTTATTTCAATTATCG
Found at i:5002752 original size:32 final size:33
Alignment explanation
Indices: 5002711--5002809 Score: 155
Period size: 33 Copynumber: 3.0 Consensus size: 33
5002701 TTTGTTTCAA
5002711 TTATCGAACTT-GAAGTTTTTAAGTATTTGAAT
1 TTATCGAACTTAGAAGTTTTTAAGTATTTGAAT
*
5002743 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
1 TTATCGAACTTAGAAGTTTTTAAGTATTTGAAT
* * *
5002776 TTATCAAACTTAGAAGTATTTAAGTATTTCAAT
1 TTATCGAACTTAGAAGTTTTTAAGTATTTGAAT
5002809 T
1 T
5002810 ATGTTGAGTT
Statistics
Matches: 62, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
32 11 0.18
33 51 0.82
ACGTcount: A:0.33, C:0.07, G:0.14, T:0.45
Consensus pattern (33 bp):
TTATCGAACTTAGAAGTTTTTAAGTATTTGAAT
Found at i:5002838 original size:13 final size:13
Alignment explanation
Indices: 5002795--5002849 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
5002785 TTAGAAGTAT
5002795 TTAAGTATTTCAA
1 TTAAGTATTTCAA
* *
5002808 TTATGTTGAGTT-AA
1 TTAAG-T-ATTTCAA
5002822 TTAAGTATTTCAA
1 TTAAGTATTTCAA
*
5002835 TTAAGTATTTGAA
1 TTAAGTATTTCAA
5002848 TT
1 TT
5002850 TATCGAACTT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
12 3 0.09
13 21 0.62
14 7 0.21
15 3 0.09
ACGTcount: A:0.35, C:0.04, G:0.13, T:0.49
Consensus pattern (13 bp):
TTAAGTATTTCAA
Found at i:5003542 original size:15 final size:15
Alignment explanation
Indices: 5003515--5003569 Score: 74
Period size: 15 Copynumber: 3.6 Consensus size: 15
5003505 TTTAATAATA
*
5003515 TTAAAATCGGTTTTT
1 TTAAAACCGGTTTTT
*
5003530 TTATAACCGGTTTTT
1 TTAAAACCGGTTTTT
*
5003545 TAAAAAACCGGTTTTT
1 T-TAAAACCGGTTTTT
5003561 TTAAAACCG
1 TTAAAACCG
5003570 AAACCGGTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
15 21 0.62
16 13 0.38
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.44
Consensus pattern (15 bp):
TTAAAACCGGTTTTT
Found at i:5003553 original size:16 final size:17
Alignment explanation
Indices: 5003517--5003566 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
5003507 TAATAATATT
*
5003517 AAAATCGGTTTTTTT--
1 AAAACCGGTTTTTTTAA
*
5003532 ATAACCGG-TTTTTTAA
1 AAAACCGGTTTTTTTAA
5003548 AAAACCGGTTTTTTTAA
1 AAAACCGGTTTTTTTAA
5003565 AA
1 AA
5003567 CCGAAACCGG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
14 6 0.21
15 6 0.21
16 7 0.24
17 10 0.34
ACGTcount: A:0.34, C:0.10, G:0.12, T:0.44
Consensus pattern (17 bp):
AAAACCGGTTTTTTTAA
Found at i:5013216 original size:11 final size:12
Alignment explanation
Indices: 5013190--5013222 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
5013180 ATATTACGAT
5013190 AAAAATTTTCCA
1 AAAAATTTTCCA
5013202 AAAAATTTTCCA
1 AAAAATTTTCCA
*
5013214 AAATATTTT
1 AAAAATTTT
5013223 TTGATAACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (12 bp):
AAAAATTTTCCA
Found at i:5013841 original size:24 final size:22
Alignment explanation
Indices: 5013814--5013871 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
5013804 CCATATACGA
*
5013814 TATCGATACTACTTTGTGTAGTAG
1 TATCGATACTACTTAGT-TA-TAG
*
5013838 TATCGATACT-CTTAGTTATGG
1 TATCGATACTACTTAGTTATAG
*
5013859 TACCGATACTACT
1 TATCGATACTACT
5013872 CCTTTGGTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 11 0.37
22 4 0.13
23 5 0.17
24 10 0.33
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (22 bp):
TATCGATACTACTTAGTTATAG
Found at i:5019734 original size:20 final size:20
Alignment explanation
Indices: 5019711--5019780 Score: 79
Period size: 20 Copynumber: 3.4 Consensus size: 20
5019701 TTAGTACAGG
5019711 TATTGTTCATCCAGTA-CTGA
1 TATTGTTCATCCAGTATC-GA
*
5019731 TATTGTTCTTGCTCAGTATCGA
1 TATTGTTCAT-C-CAGTATCGA
*
5019753 TATTGTTCATCCAGCATCGA
1 TATTGTTCATCCAGTATCGA
*
5019773 TAATGTTC
1 TATTGTTC
5019781 TTGCAGCCTT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
20 24 0.56
21 2 0.05
22 16 0.37
23 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.16, T:0.41
Consensus pattern (20 bp):
TATTGTTCATCCAGTATCGA
Found at i:5019787 original size:20 final size:20
Alignment explanation
Indices: 5019729--5019787 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
5019719 ATCCAGTACT
*
5019729 GATATTGTTCTTGCTCAGTATC
1 GATATTGTTCTTG--CAGCATC
* *
5019751 GATATTGTTCATCCAGCATC
1 GATATTGTTCTTGCAGCATC
*
5019771 GATAATGTTCTTGCAGC
1 GATATTGTTCTTGCAGC
5019788 CTTGATAGGG
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
20 20 0.65
22 11 0.35
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (20 bp):
GATATTGTTCTTGCAGCATC
Found at i:5020083 original size:2 final size:2
Alignment explanation
Indices: 5020078--5020139 Score: 124
Period size: 2 Copynumber: 31.0 Consensus size: 2
5020068 TCTATATGTT
5020078 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
5020120 TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA
5020140 CTTTTGTTTT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 60 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:5022354 original size:24 final size:22
Alignment explanation
Indices: 5022327--5022380 Score: 74
Period size: 21 Copynumber: 2.4 Consensus size: 22
5022317 ATACAGTATC
5022327 GATACTACTTAGTGTAGTAGTACT
1 GATACTACTTAGT-TA-TAGTACT
*
5022351 GATACT-CTTAGTTATGGTACT
1 GATACTACTTAGTTATAGTACT
5022372 GATACTACT
1 GATACTACT
5022381 CCTTTGGTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 12 0.43
22 4 0.14
23 6 0.21
24 6 0.21
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.39
Consensus pattern (22 bp):
GATACTACTTAGTTATAGTACT
Found at i:5029739 original size:18 final size:18
Alignment explanation
Indices: 5029718--5029759 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
5029708 AGATCAACAA
5029718 CTACAATCATATCAAACC
1 CTACAATCATATCAAACC
5029736 CTACAATCATATCAAACC
1 CTACAATCATATCAAACC
5029754 CTACAA
1 CTACAA
5029760 ACGTATTAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.45, C:0.33, G:0.00, T:0.21
Consensus pattern (18 bp):
CTACAATCATATCAAACC
Found at i:5030540 original size:17 final size:17
Alignment explanation
Indices: 5030515--5030554 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
5030505 GTATGTTGTT
*
5030515 CATTAAAGCATGCATTG
1 CATTTAAGCATGCATTG
* *
5030532 CATTTAAGCATGTATTT
1 CATTTAAGCATGCATTG
5030549 CATTTA
1 CATTTA
5030555 GGGAAGTAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (17 bp):
CATTTAAGCATGCATTG
Found at i:5030581 original size:17 final size:17
Alignment explanation
Indices: 5030561--5030619 Score: 50
Period size: 17 Copynumber: 3.5 Consensus size: 17
5030551 TTTAGGGAAG
5030561 TAGTTCATTTATGCATC
1 TAGTTCATTTATGCATC
* *
5030578 TAGTT-ATTTAAT-AAAC
1 TAGTTCATTT-ATGCATC
* * *
5030594 TACTTCATTCATGCATT
1 TAGTTCATTTATGCATC
5030611 TAGTTCATT
1 TAGTTCATT
5030620 GAATAAAGTT
Statistics
Matches: 31, Mismatches: 8, Indels: 6
0.69 0.18 0.13
Matches are distributed among these distances:
16 12 0.39
17 19 0.61
ACGTcount: A:0.29, C:0.15, G:0.08, T:0.47
Consensus pattern (17 bp):
TAGTTCATTTATGCATC
Found at i:5030633 original size:18 final size:18
Alignment explanation
Indices: 5030610--5030655 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
5030600 ATTCATGCAT
5030610 TTAGTTCATTGAATAAAG
1 TTAGTTCATTGAATAAAG
*
5030628 TTAGTTCATTGAATAATG
1 TTAGTTCATTGAATAAAG
*
5030646 TTATTTCATT
1 TTAGTTCATT
5030656 AATCAAACTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.48
Consensus pattern (18 bp):
TTAGTTCATTGAATAAAG
Found at i:5031946 original size:30 final size:30
Alignment explanation
Indices: 5031905--5031992 Score: 149
Period size: 30 Copynumber: 2.9 Consensus size: 30
5031895 TATCACCACT
5031905 ACACTTCTTTCATTTACAATCCACTTCACC
1 ACACTTCTTTCATTTACAATCCACTTCACC
* *
5031935 ACACTTGTTTCATTTACAATCCTCTTCACC
1 ACACTTCTTTCATTTACAATCCACTTCACC
*
5031965 ACACTTCTTTCATTTACAACCCACTTCA
1 ACACTTCTTTCATTTACAATCCACTTCA
5031993 ACTTTACTCT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 53 1.00
ACGTcount: A:0.26, C:0.35, G:0.01, T:0.38
Consensus pattern (30 bp):
ACACTTCTTTCATTTACAATCCACTTCACC
Found at i:5034818 original size:18 final size:18
Alignment explanation
Indices: 5034773--5034820 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
5034763 TCATTCATGC
5034773 ATTTAGTTCATTGAATAA
1 ATTTAGTTCATTGAATAA
*
5034791 AGTTAGTTCATTGAATAA
1 ATTTAGTTCATTGAATAA
* *
5034809 TTTTATTTCATT
1 ATTTAGTTCATT
5034821 AATCAAACTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.33, C:0.06, G:0.10, T:0.50
Consensus pattern (18 bp):
ATTTAGTTCATTGAATAA
Done.