Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008717.1 Hibiscus syriacus cultivar Beakdansim tig00111772_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3453450
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 11 of 16
Found at i:2074250 original size:35 final size:35
Alignment explanation
Indices: 2074211--2074332 Score: 127
Period size: 35 Copynumber: 3.3 Consensus size: 35
2074201 TCGATTGAAG
* *
2074211 CTCGATTTTGATCTCGATTCAAGCTCGAACTCAAA
1 CTCGAATTTGAGCTCGATTCAAGCTCGAACTCAAA
2074246 CTCGAATTTGAGCTCGATTCAAGCTCGAACTCGATTCAA
1 CTCGAATTTGAGCTCGATTCAAGCTCGAACTC-A---AA
* ** * *
2074285 GCTCGAACTCAAACTCGAATTCAAACTCGAACTCAAA
1 -CTCGAATTTGAGCTCG-ATTCAAGCTCGAACTCAAA
2074322 CTCGAATTTGA
1 CTCGAATTTGA
2074333 ACCTACAAAA
Statistics
Matches: 71, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
35 30 0.42
36 9 0.13
37 2 0.03
39 2 0.03
40 13 0.18
41 15 0.21
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (35 bp):
CTCGAATTTGAGCTCGATTCAAGCTCGAACTCAAA
Found at i:2074261 original size:24 final size:24
Alignment explanation
Indices: 2074223--2074329 Score: 119
Period size: 24 Copynumber: 4.3 Consensus size: 24
2074213 CGATTTTGAT
2074223 CTCG-ATTCAAGCTCGAACTCAAA
1 CTCGAATTCAAGCTCGAACTCAAA
** *
2074246 CTCGAATTTGAGCTCGATTCAAGCTCGAA
1 CTCGAATTCAAGCTCG----AA-CTCAAA
2074275 CTCG-ATTCAAGCTCGAACTCAAA
1 CTCGAATTCAAGCTCGAACTCAAA
*
2074298 CTCGAATTCAAACTCGAACTCAAA
1 CTCGAATTCAAGCTCGAACTCAAA
2074322 CTCGAATT
1 CTCGAATT
2074330 TGAACCTACA
Statistics
Matches: 70, Mismatches: 7, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
23 13 0.19
24 37 0.53
28 11 0.16
29 9 0.13
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (24 bp):
CTCGAATTCAAGCTCGAACTCAAA
Found at i:2074280 original size:17 final size:17
Alignment explanation
Indices: 2074258--2074294 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
2074248 CGAATTTGAG
2074258 CTCGATTCAAGCTCGAA
1 CTCGATTCAAGCTCGAA
2074275 CTCGATTCAAGCTCGAA
1 CTCGATTCAAGCTCGAA
2074292 CTC
1 CTC
2074295 AAACTCGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.24
Consensus pattern (17 bp):
CTCGATTCAAGCTCGAA
Found at i:2074301 original size:12 final size:12
Alignment explanation
Indices: 2074281--2074327 Score: 76
Period size: 12 Copynumber: 3.9 Consensus size: 12
2074271 CGAACTCGAT
*
2074281 TCAAGCTCGAAC
1 TCAAACTCGAAC
*
2074293 TCAAACTCGAAT
1 TCAAACTCGAAC
2074305 TCAAACTCGAAC
1 TCAAACTCGAAC
2074317 TCAAACTCGAA
1 TCAAACTCGAA
2074328 TTTGAACCTA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.40, C:0.30, G:0.11, T:0.19
Consensus pattern (12 bp):
TCAAACTCGAAC
Found at i:2074317 original size:6 final size:6
Alignment explanation
Indices: 2074234--2074327 Score: 52
Period size: 6 Copynumber: 16.0 Consensus size: 6
2074224 TCGATTCAAG
* * * * *
2074234 CTCGAA CTCAAA CTCGAA TTTGAG CTCG-A TTC-AA GCTCGAA CTCG-A
1 CTCGAA CTCGAA CTCGAA CTCGAA CTCGAA CTCGAA -CTCGAA CTCGAA
* * * * *
2074280 TTC-AA GCTCGAA CTCAAA CTCGAA TTCAAA CTCGAA CTCAAA CTCGAA
1 CTCGAA -CTCGAA CTCGAA CTCGAA CTCGAA CTCGAA CTCGAA CTCGAA
2074328 TTTGAACCTA
Statistics
Matches: 62, Mismatches: 20, Indels: 12
0.66 0.21 0.13
Matches are distributed among these distances:
5 7 0.11
6 51 0.82
7 4 0.06
ACGTcount: A:0.35, C:0.29, G:0.14, T:0.22
Consensus pattern (6 bp):
CTCGAA
Found at i:2076305 original size:7 final size:7
Alignment explanation
Indices: 2076289--2076378 Score: 78
Period size: 7 Copynumber: 12.7 Consensus size: 7
2076279 TGTATAACTA
*
2076289 AAACCCT
1 AAACCAT
2076296 AAACCAT
1 AAACCAT
2076303 AAACCAT
1 AAACCAT
2076310 AAA-CACT
1 AAACCA-T
2076317 AAAACCAT
1 -AAACCAT
2076325 AAA-CACT
1 AAACCA-T
2076332 AAATCC-T
1 AAA-CCAT
*
2076339 AAACCCT
1 AAACCAT
*
2076346 AAAGCAT
1 AAACCAT
*
2076353 AAACCCT
1 AAACCAT
*
2076360 AAAGCAT
1 AAACCAT
2076367 AAACCAT
1 AAACCAT
2076374 AAACC
1 AAACC
2076379 CTATCACATA
Statistics
Matches: 68, Mismatches: 8, Indels: 14
0.76 0.09 0.16
Matches are distributed among these distances:
6 6 0.09
7 55 0.81
8 4 0.06
9 3 0.04
ACGTcount: A:0.53, C:0.30, G:0.02, T:0.14
Consensus pattern (7 bp):
AAACCAT
Found at i:2076313 original size:21 final size:21
Alignment explanation
Indices: 2076289--2076381 Score: 116
Period size: 21 Copynumber: 4.4 Consensus size: 21
2076279 TGTATAACTA
2076289 AAACCCTAAACCATAAACCAT
1 AAACCCTAAACCATAAACCAT
*
2076310 AAACACTAAAACCATAAA-CACT
1 AAACCCT-AAACCATAAACCA-T
* * *
2076332 AAATCCTAAACCCTAAAGCAT
1 AAACCCTAAACCATAAACCAT
*
2076353 AAACCCTAAAGCATAAACCAT
1 AAACCCTAAACCATAAACCAT
2076374 AAACCCTA
1 AAACCCTA
2076382 TCACATAATT
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
21 43 0.70
22 18 0.30
ACGTcount: A:0.53, C:0.30, G:0.02, T:0.15
Consensus pattern (21 bp):
AAACCCTAAACCATAAACCAT
Found at i:2076471 original size:14 final size:14
Alignment explanation
Indices: 2076452--2076481 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
2076442 TATAATTATC
*
2076452 AATAATGTATTTTT
1 AATAATGTAATTTT
2076466 AATAATGTAATTTT
1 AATAATGTAATTTT
2076480 AA
1 AA
2076482 AAAATCTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (14 bp):
AATAATGTAATTTT
Found at i:2084908 original size:77 final size:77
Alignment explanation
Indices: 2084827--2084974 Score: 185
Period size: 77 Copynumber: 1.9 Consensus size: 77
2084817 TAGAGAATAC
* * *
2084827 TATTTA-TCATAAAAATAATTAACTTTATTATTTTTAAATTATT-TAAATAATT-TATTTAATTA
1 TATTTATTAATAAAAATAA-T-ACTTTATTATATTTAAAATATTATAAAT-ATTGTATTTAATTA
* *
2084889 TTGAAAATAATATAA
63 ATAAAAATAATATAA
* *
2084904 TATTTATTAATAAAAATAATATTTTATTATATTTAAAATATTATAAATATTGTATTTTATTAATA
1 TATTTATTAATAAAAATAATACTTTATTATATTTAAAATATTATAAATATTGTATTTAATTAATA
2084969 AAAATA
66 AAAATA
2084975 TCAAATATAA
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
76 22 0.36
77 28 0.46
78 11 0.18
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (77 bp):
TATTTATTAATAAAAATAATACTTTATTATATTTAAAATATTATAAATATTGTATTTAATTAATA
AAAATAATATAA
Found at i:2085421 original size:23 final size:23
Alignment explanation
Indices: 2085394--2085468 Score: 68
Period size: 23 Copynumber: 3.3 Consensus size: 23
2085384 AATCTAGCCT
2085394 TTATAATA-TAATTTAATATATTA
1 TTATAATACTAA-TTAATATATTA
*
2085417 TTATAATACT-ATATAATATAATA
1 TTATAATACTAAT-TAATATATTA
* *
2085440 TTATATTATTAA-TAATATATT-
1 TTATAATACTAATTAATATATTA
2085461 TTAATAAT
1 TT-ATAAT
2085469 TAATATTTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
21 2 0.05
22 13 0.30
23 26 0.60
24 2 0.05
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (23 bp):
TTATAATACTAATTAATATATTA
Found at i:2085438 original size:28 final size:29
Alignment explanation
Indices: 2085399--2085459 Score: 81
Period size: 28 Copynumber: 2.1 Consensus size: 29
2085389 AGCCTTTATA
* *
2085399 ATATAATTTAATA-TATTATTA-TAATACT
1 ATATAATATAATATTA-TATTATTAATAAT
2085427 ATATAATATAATATTATATTATTAATAAT
1 ATATAATATAATATTATATTATTAATAAT
2085456 ATAT
1 ATAT
2085460 TTTAATAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 17 0.59
29 12 0.41
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (29 bp):
ATATAATATAATATTATATTATTAATAAT
Found at i:2092437 original size:44 final size:44
Alignment explanation
Indices: 2092276--2092702 Score: 553
Period size: 44 Copynumber: 9.8 Consensus size: 44
2092266 GCAAAAACGA
* * ** *
2092276 TAAGGTCTTATCCTTGCACATAG-AAAAAGAGCCT-GGGAAACTG
1 TAAGG-CTTACCCTTGCACACAGCAAAGGGAACCTGGGGAAACTG
* *
2092319 TAAGGCTTATCCTTGCACACAGCAAA-GGAACCTGGGAAAACTG
1 TAAGGCTTACCCTTGCACACAGCAAAGGGAACCTGGGGAAACTG
2092362 TAAGGCTTACCCTTGCACACAGCAAA-GGAACCTGGGGAAACTG
1 TAAGGCTTACCCTTGCACACAGCAAAGGGAACCTGGGGAAACTG
* *
2092405 TAAGGCTTACCCTTGCACACAACAAAGGGAACCTGGGGGAACTG
1 TAAGGCTTACCCTTGCACACAGCAAAGGGAACCTGGGGAAACTG
* *
2092449 TAAGGCTTACCCTTGCACACAGCAAAAGGAACCTGGGGGAACTG
1 TAAGGCTTACCCTTGCACACAGCAAAGGGAACCTGGGGAAACTG
* * *
2092493 TAAGGTTTACCCTTGCACACAACAAAGGGAACCTGGGGGAACTG
1 TAAGGCTTACCCTTGCACACAGCAAAGGGAACCTGGGGAAACTG
* *
2092537 TAAGGCTTACCCTTGCACACAACAAAGGGAACCTGGGGGAACTG
1 TAAGGCTTACCCTTGCACACAGCAAAGGGAACCTGGGGAAACTG
* *
2092581 TAAGGCTTACCCTTGCACACAGCAAAGGG-GCCTGGGGGACACTG
1 TAAGGCTTACCCTTGCACACAGCAAAGGGAACCT-GGGGAAACTG
* * * * *
2092625 TAAGGATTACCCTTGCATACAGCAAAGGG-GCTTGGGGGACACTG
1 TAAGGCTTACCCTTGCACACAGCAAAGGGAACCT-GGGGAAACTG
* *
2092669 TAAGGCTTACCTTTGCACACAACAAAGGG-ACCTG
1 TAAGGCTTACCCTTGCACACAGCAAAGGGAACCTG
2092703 CTGTAACGGT
Statistics
Matches: 353, Mismatches: 27, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
42 21 0.06
43 86 0.24
44 246 0.70
ACGTcount: A:0.31, C:0.24, G:0.27, T:0.18
Consensus pattern (44 bp):
TAAGGCTTACCCTTGCACACAGCAAAGGGAACCTGGGGAAACTG
Found at i:2092569 original size:132 final size:131
Alignment explanation
Indices: 2092314--2092702 Score: 613
Period size: 132 Copynumber: 3.0 Consensus size: 131
2092304 GAGCCTGGGA
* ** *
2092314 AACTGTAAGGCTTATCCTTGCACACAGCAAAGGAACCTGGGAAAACTGTAAGGCTTACCCTTGCA
1 AACTGTAAGGCTTACCCTTGCACACAGCAAAGGAACCTGGGGGAACTGTAAGGATTACCCTTGCA
*
2092379 CACAGCAAA-GGAACCTGGGGAAACTGTAAGGCTTACCCTTGCACACAACAAAGGGAACCTGGGG
66 CACAGCAAAGGGAACCTGGGGGAACTGTAAGGCTTACCCTTGCACACAACAAAGGGAACCTGGGG
2092443 G
131 G
*
2092444 AACTGTAAGGCTTACCCTTGCACACAGCAAAAGGAACCTGGGGGAACTGTAAGGTTTACCCTTGC
1 AACTGTAAGGCTTACCCTTGCACACAGC-AAAGGAACCTGGGGGAACTGTAAGGATTACCCTTGC
*
2092509 ACACAACAAAGGGAACCTGGGGGAACTGTAAGGCTTACCCTTGCACACAACAAAGGGAACCTGGG
65 ACACAGCAAAGGGAACCTGGGGGAACTGTAAGGCTTACCCTTGCACACAACAAAGGGAACCTGGG
2092574 GG
130 GG
**
2092576 AACTGTAAGGCTTACCCTTGCACACAGCAAAGGGGCCTGGGGGACACTGTAAGGATTACCCTTGC
1 AACTGTAAGGCTTACCCTTGCACACAGCAAAGGAACCTGGGGGA-ACTGTAAGGATTACCCTTGC
* * * *
2092641 ATACAGCAAAGGG-GCTTGGGGGACACTGTAAGGCTTACCTTTGCACACAACAAAGGG-ACCTG
65 ACACAGCAAAGGGAACCTGGGGGA-ACTGTAAGGCTTACCCTTGCACACAACAAAGGGAACCTG
2092703 CTGTAACGGT
Statistics
Matches: 241, Mismatches: 14, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
130 27 0.11
131 69 0.29
132 145 0.60
ACGTcount: A:0.31, C:0.24, G:0.27, T:0.17
Consensus pattern (131 bp):
AACTGTAAGGCTTACCCTTGCACACAGCAAAGGAACCTGGGGGAACTGTAAGGATTACCCTTGCA
CACAGCAAAGGGAACCTGGGGGAACTGTAAGGCTTACCCTTGCACACAACAAAGGGAACCTGGGG
G
Found at i:2095435 original size:13 final size:13
Alignment explanation
Indices: 2095417--2095458 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
2095407 TTCGAAAAAC
2095417 GGTCAACGGGTCG
1 GGTCAACGGGTCG
*
2095430 GGTCAACGAGTCG
1 GGTCAACGGGTCG
* *
2095443 AGTAAACGGGTCG
1 GGTCAACGGGTCG
2095456 GGT
1 GGT
2095459 TGGGTCGGGT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.21, C:0.19, G:0.43, T:0.17
Consensus pattern (13 bp):
GGTCAACGGGTCG
Found at i:2097517 original size:44 final size:44
Alignment explanation
Indices: 2097465--2097763 Score: 519
Period size: 44 Copynumber: 6.8 Consensus size: 44
2097455 GAGCTTGGGA
2097465 AACTGTAAGGCTTACCCTTGCACACAACAAAGGGAACCTGGGGG
1 AACTGTAAGGCTTACCCTTGCACACAACAAAGGGAACCTGGGGG
2097509 AACTGTAAGGCTTACCCTTGCACACAACAAAGGGAACCTGGGGG
1 AACTGTAAGGCTTACCCTTGCACACAACAAAGGGAACCTGGGGG
* * *
2097553 AACTGTAAGGCTTACTCTTGCACACAGCAAAAGGAACCTGGGGG
1 AACTGTAAGGCTTACCCTTGCACACAACAAAGGGAACCTGGGGG
2097597 AACTGTAAGGCTTACCCTTGCACACAACAAAGGGAACCTGGGGG
1 AACTGTAAGGCTTACCCTTGCACACAACAAAGGGAACCTGGGGG
2097641 AACTGTAAGGCTTACCCTTGCACACAACAAAGGGAACCTGGGGG
1 AACTGTAAGGCTTACCCTTGCACACAACAAAGGGAACCTGGGGG
* * *
2097685 AACTGTAAGGCTTACCCTTGCACACAGCAAAGGG-GCTTGGGGG
1 AACTGTAAGGCTTACCCTTGCACACAACAAAGGGAACCTGGGGG
*
2097728 AAACTGTAAGGCTTACCTTTGCACACAACAAAGGGA
1 -AACTGTAAGGCTTACCCTTGCACACAACAAAGGGA
2097764 CTTGTTGTAA
Statistics
Matches: 242, Mismatches: 11, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
43 7 0.03
44 235 0.97
ACGTcount: A:0.32, C:0.24, G:0.27, T:0.17
Consensus pattern (44 bp):
AACTGTAAGGCTTACCCTTGCACACAACAAAGGGAACCTGGGGG
Found at i:2097625 original size:132 final size:131
Alignment explanation
Indices: 2097427--2097763 Score: 550
Period size: 132 Copynumber: 2.6 Consensus size: 131
2097417 GCAAAAACGA
* * * * *
2097427 TAAGGTCTTATCCTTGCACATAGCAAAA-GAGCTTGGGAAACTGTAAGGCTTACCCTTGCACACA
1 TAAGG-CTTACCCTTGCACACAGCAAAAGGACCTGGGGGAACTGTAAGGCTTACCCTTGCACACA
2097491 ACAAAGGGAACCTGGGGGAACTGTAAGGCTTACCCTTGCACACAACAAAGGGAACCTGGGGGAAC
65 ACAAAGGGAACCTGGGGGAACTGTAAGGCTTACCCTTGCACACAACAAAGGGAACCTGGGGGAAC
2097556 TG
130 TG
*
2097558 TAAGGCTTACTCTTGCACACAGCAAAAGGAACCTGGGGGAACTGTAAGGCTTACCCTTGCACACA
1 TAAGGCTTACCCTTGCACACAGCAAAAGG-ACCTGGGGGAACTGTAAGGCTTACCCTTGCACACA
2097623 ACAAAGGGAACCTGGGGGAACTGTAAGGCTTACCCTTGCACACAACAAAGGGAACCTGGGGGAAC
65 ACAAAGGGAACCTGGGGGAACTGTAAGGCTTACCCTTGCACACAACAAAGGGAACCTGGGGGAAC
2097688 TG
130 TG
* * * *
2097690 TAAGGCTTACCCTTGCACACAGCAAAGGGGCTTGGGGGAAACTGTAAGGCTTACCTTTGCACACA
1 TAAGGCTTACCCTTGCACACAGCAAAAGGACCTGGGGG-AACTGTAAGGCTTACCCTTGCACACA
2097755 ACAAAGGGA
65 ACAAAGGGA
2097764 CTTGTTGTAA
Statistics
Matches: 192, Mismatches: 11, Indels: 5
0.92 0.05 0.02
Matches are distributed among these distances:
130 19 0.10
131 13 0.07
132 160 0.83
ACGTcount: A:0.32, C:0.23, G:0.27, T:0.18
Consensus pattern (131 bp):
TAAGGCTTACCCTTGCACACAGCAAAAGGACCTGGGGGAACTGTAAGGCTTACCCTTGCACACAA
CAAAGGGAACCTGGGGGAACTGTAAGGCTTACCCTTGCACACAACAAAGGGAACCTGGGGGAACT
G
Found at i:2100596 original size:13 final size:13
Alignment explanation
Indices: 2100580--2100608 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
2100570 GTCAACGTCA
2100580 GTCAACGGGTCGG
1 GTCAACGGGTCGG
2100593 GTCAACGGGTCGG
1 GTCAACGGGTCGG
2100606 GTC
1 GTC
2100609 GGGTTATGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.14, C:0.24, G:0.45, T:0.17
Consensus pattern (13 bp):
GTCAACGGGTCGG
Found at i:2101574 original size:22 final size:23
Alignment explanation
Indices: 2101549--2101591 Score: 79
Period size: 22 Copynumber: 1.9 Consensus size: 23
2101539 GAATGGTCAG
2101549 TGGGTGAGTG-AAAATAGATTGT
1 TGGGTGAGTGAAAAATAGATTGT
2101571 TGGGTGAGTGAAAAATAGATT
1 TGGGTGAGTGAAAAATAGATT
2101592 ATTGAAATCG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.30
Consensus pattern (23 bp):
TGGGTGAGTGAAAAATAGATTGT
Found at i:2102248 original size:22 final size:22
Alignment explanation
Indices: 2102223--2102267 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
2102213 AACATATATA
2102223 TTTAACATTCGTTTAGT-GTTCG
1 TTTAACATTCGTTTA-TCGTTCG
*
2102245 TTTAACATTTGTTTATCGTTCG
1 TTTAACATTCGTTTATCGTTCG
2102267 T
1 T
2102268 CTAAAAATTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 1 0.05
22 20 0.95
ACGTcount: A:0.18, C:0.13, G:0.16, T:0.53
Consensus pattern (22 bp):
TTTAACATTCGTTTATCGTTCG
Found at i:2104280 original size:7 final size:8
Alignment explanation
Indices: 2104251--2104279 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
2104241 TCAATATATT
2104251 AAAAAATA
1 AAAAAATA
2104259 AAAAAATA
1 AAAAAATA
2104267 AAAAAATA
1 AAAAAATA
2104275 AAAAA
1 AAAAA
2104280 TTTTTACATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (8 bp):
AAAAAATA
Found at i:2107105 original size:31 final size:31
Alignment explanation
Indices: 2107041--2107106 Score: 75
Period size: 31 Copynumber: 2.1 Consensus size: 31
2107031 TCACATGGCT
*
2107041 TTTTGATAAAAAGGTAATTATATTTATCTTA
1 TTTTGATAAAAAGGTAATTATATTTATCCTA
2107072 TTTTGAT-AAAAGAGT-A-TATATTTATTCACTA
1 TTTTGATAAAAAG-GTAATTATATTTA-TC-CTA
2107103 TTTT
1 TTTT
2107107 ATGATGCTGT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
29 8 0.26
30 8 0.26
31 15 0.48
ACGTcount: A:0.36, C:0.05, G:0.09, T:0.50
Consensus pattern (31 bp):
TTTTGATAAAAAGGTAATTATATTTATCCTA
Found at i:2112810 original size:18 final size:18
Alignment explanation
Indices: 2112789--2112829 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
2112779 GTTGTTTTTA
* *
2112789 AAATAAAATATAAGAATT
1 AAATAAAAGAAAAGAATT
*
2112807 AAATAAAAGAAAATAATT
1 AAATAAAAGAAAAGAATT
2112825 AAATA
1 AAATA
2112830 TATAAGAGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (18 bp):
AAATAAAAGAAAAGAATT
Found at i:2113336 original size:12 final size:12
Alignment explanation
Indices: 2113315--2113344 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
2113305 AGGAGTGTGC
2113315 GAAAAATAGAGA
1 GAAAAATAGAGA
*
2113327 GAAAACTAGAGA
1 GAAAAATAGAGA
2113339 GAAAAA
1 GAAAAA
2113345 GAAGATTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.67, C:0.03, G:0.23, T:0.07
Consensus pattern (12 bp):
GAAAAATAGAGA
Found at i:2114753 original size:47 final size:44
Alignment explanation
Indices: 2114696--2114805 Score: 107
Period size: 47 Copynumber: 2.4 Consensus size: 44
2114686 AAACGATAGA
* * *
2114696 TTTTTCCTTTTTCTTTTTTTTCATTCT-TTGTTCGAAACACTGGACAT
1 TTTTTTCTTTTTCTTTTTTTT--TT-TGATGTTCGAAACACT-GAAAT
*
2114743 TTTTTTCTTTTTTCTTTCTTTTTTTTGATGTTCGAAACAGTGAAAT
1 TTTTTTC-TTTTTCTTT-TTTTTTTTGATGTTCGAAACACTGAAAT
*
2114789 TTGTTTCTTTTT-TTTTT
1 TTTTTTCTTTTTCTTTTT
2114806 CTGCTGTTCG
Statistics
Matches: 55, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
43 2 0.04
44 3 0.05
45 5 0.09
46 11 0.20
47 20 0.36
48 9 0.16
49 5 0.09
ACGTcount: A:0.14, C:0.14, G:0.09, T:0.64
Consensus pattern (44 bp):
TTTTTTCTTTTTCTTTTTTTTTTTGATGTTCGAAACACTGAAAT
Found at i:2115924 original size:14 final size:14
Alignment explanation
Indices: 2115898--2115944 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
2115888 GTTCAGACAA
*
2115898 AAATAAAATTAAAT
1 AAATAAAATAAAAT
2115912 AAATCAAAATAAAAT
1 AAAT-AAAATAAAAT
* *
2115927 AAATATAATGAAAT
1 AAATAAAATAAAAT
2115941 AAAT
1 AAAT
2115945 TTTGCTAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 16 0.55
15 13 0.45
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (14 bp):
AAATAAAATAAAAT
Found at i:2118735 original size:74 final size:76
Alignment explanation
Indices: 2118612--2118775 Score: 233
Period size: 74 Copynumber: 2.2 Consensus size: 76
2118602 TAAATAGGGA
* *
2118612 GGTACCGATACCCCTCATAGGGTGTACCGATACTACTATGCCAATTTTGGCTCCAAGAAAAACAG
1 GGTACCGATACCCCTAATAGGGTGTACCGATACCACTATGCCAATTTTGGCTCCAAGAAAAACAG
2118677 AAAGCCCAATG
66 AAAGCCCAATG
* * * * *
2118688 GGTACCGATACCCTTAATA-GG-GTACCGATACCCCTATGCTAATTTTGGCTCCGATAAAAACAG
1 GGTACCGATACCCCTAATAGGGTGTACCGATACCACTATGCCAATTTTGGCTCCAAGAAAAACAG
*
2118751 AATGCCCAATG
66 AAAGCCCAATG
*
2118762 GGTATCGATACCCC
1 GGTACCGATACCCC
2118776 CTAGAGGTAT
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
74 59 0.76
75 2 0.03
76 17 0.22
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (76 bp):
GGTACCGATACCCCTAATAGGGTGTACCGATACCACTATGCCAATTTTGGCTCCAAGAAAAACAG
AAAGCCCAATG
Found at i:2120556 original size:20 final size:22
Alignment explanation
Indices: 2120531--2120588 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 22
2120521 CAACGTTGAT
2120531 TTTGAAAGTAAAAATAAA-GA-
1 TTTGAAAGTAAAAATAAATGAG
* * *
2120551 TTTGAAAATCAAACTAAATGAG
1 TTTGAAAGTAAAAATAAATGAG
2120573 TTTGAAAAG-AAAAATA
1 TTTG-AAAGTAAAAATA
2120589 CTGATTTGCA
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
20 15 0.52
21 2 0.07
22 9 0.31
23 3 0.10
ACGTcount: A:0.57, C:0.03, G:0.14, T:0.26
Consensus pattern (22 bp):
TTTGAAAGTAAAAATAAATGAG
Found at i:2122993 original size:32 final size:32
Alignment explanation
Indices: 2122911--2122994 Score: 93
Period size: 32 Copynumber: 2.7 Consensus size: 32
2122901 AAGGTGATCA
* *
2122911 TTGGGTAGGCTCT-GAGGCCTCGAGATCTTTC
1 TTGGGTAGGCTCTCGAGGCCCCGAGAACTTTC
* * *
2122942 TTGGGCAGGC-CCCGTGGCCCCGAGTAACTTTC
1 TTGGGTAGGCTCTCGAGGCCCCGAG-AACTTTC
2122974 TTGGGTAGGCTCTCG-GGCCCC
1 TTGGGTAGGCTCTCGAGGCCCC
2122995 AAGGCATTCC
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
30 1 0.02
31 18 0.42
32 21 0.49
33 3 0.07
ACGTcount: A:0.11, C:0.30, G:0.33, T:0.26
Consensus pattern (32 bp):
TTGGGTAGGCTCTCGAGGCCCCGAGAACTTTC
Found at i:2130458 original size:58 final size:58
Alignment explanation
Indices: 2130388--2130502 Score: 221
Period size: 58 Copynumber: 2.0 Consensus size: 58
2130378 AATTTATTCA
*
2130388 TCAATCTTTACTTCACCCGTCATCTTCCTTCCTCATCTCCAAATCCTCCATGTTTTTG
1 TCAATATTTACTTCACCCGTCATCTTCCTTCCTCATCTCCAAATCCTCCATGTTTTTG
2130446 TCAATATTTACTTCACCCGTCATCTTCCTTCCTCATCTCCAAATCCTCCATGTTTTT
1 TCAATATTTACTTCACCCGTCATCTTCCTTCCTCATCTCCAAATCCTCCATGTTTTT
2130503 ATCTTTAAAG
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.18, C:0.36, G:0.04, T:0.42
Consensus pattern (58 bp):
TCAATATTTACTTCACCCGTCATCTTCCTTCCTCATCTCCAAATCCTCCATGTTTTTG
Found at i:2134098 original size:31 final size:30
Alignment explanation
Indices: 2134063--2134148 Score: 95
Period size: 31 Copynumber: 2.9 Consensus size: 30
2134053 CCCAAAATAT
* *
2134063 AACTTTTGAAAATTTACATTTTTAGTCTCTA
1 AACTTTT-AAAATTTACATTTTCAGTCCCTA
* *
2134094 AACTTTTACAAATTTACACTTTGA-TCCCTA
1 AACTTTTA-AAATTTACATTTTCAGTCCCTA
*
2134124 AACTTTCAAAATTTAC-TTTTCAGTC
1 AACTTTTAAAATTTACATTTTCAGTC
2134149 ATCATTCCAA
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
28 4 0.09
29 10 0.21
30 13 0.28
31 20 0.43
ACGTcount: A:0.33, C:0.19, G:0.05, T:0.44
Consensus pattern (30 bp):
AACTTTTAAAATTTACATTTTCAGTCCCTA
Found at i:2134379 original size:32 final size:31
Alignment explanation
Indices: 2134243--2134402 Score: 137
Period size: 32 Copynumber: 4.9 Consensus size: 31
2134233 TACCAAATTT
*
2134243 TTTTTCTCTAATATTTATTATTATGGGCTCAA
1 TTTTT-TCTAATATTTATTATTATGGGCTTAA
*
2134275 TTGTTTTCTAATATTTATTATTA-GGGTCTTACTC
1 TT-TTTTCTAATATTTATTATTATGGG-CTTA--A
* * *
2134309 TTAGAATTTATTTAATACTTATTATTAAGGG-TTCAA
1 TT----TTT-TCTAATATTTATTATTATGGGCTT-AA
2134345 TTTTTCTCTAATATTTATTATTATGGGCTTAA
1 TTTTT-TCTAATATTTATTATTATGGGCTTAA
*
2134377 TTTTTT-TAATATTTATTATTAGGGGC
1 TTTTTTCTAATATTTATTATTATGGGC
2134403 CTACTCTTAT
Statistics
Matches: 106, Mismatches: 11, Indels: 24
0.75 0.08 0.17
Matches are distributed among these distances:
30 19 0.18
31 4 0.04
32 50 0.47
33 5 0.05
34 2 0.02
36 2 0.02
37 5 0.05
38 16 0.15
39 3 0.03
ACGTcount: A:0.26, C:0.09, G:0.11, T:0.54
Consensus pattern (31 bp):
TTTTTTCTAATATTTATTATTATGGGCTTAA
Found at i:2136110 original size:22 final size:23
Alignment explanation
Indices: 2136080--2136126 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
2136070 AAAATATATT
2136080 TATTGATATTTCTAATAATATAA
1 TATTGATATTTCTAATAATATAA
* *
2136103 TATT-ATATTTTTAATATTATAA
1 TATTGATATTTCTAATAATATAA
2136125 TA
1 TA
2136127 AAATAATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (23 bp):
TATTGATATTTCTAATAATATAA
Found at i:2136133 original size:30 final size:32
Alignment explanation
Indices: 2136074--2136133 Score: 79
Period size: 30 Copynumber: 1.9 Consensus size: 32
2136064 ATATTTAAAA
* * *
2136074 TATATTTATTGATATTTCTAATAATATAATAT
1 TATATTTATTAATATTTATAATAAAATAATAT
2136106 TATATTT-TTAATA-TTATAATAAAATAAT
1 TATATTTATTAATATTTATAATAAAATAAT
2136134 CAAATATATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 13 0.52
31 5 0.20
32 7 0.28
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (32 bp):
TATATTTATTAATATTTATAATAAAATAATAT
Found at i:2136289 original size:23 final size:23
Alignment explanation
Indices: 2136263--2136307 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
2136253 AATAATATTT
2136263 TAATAAAGATATTTAAAATATAC
1 TAATAAAGATATTTAAAATATAC
* * *
2136286 TAATTAATATTTTTAAAATATA
1 TAATAAAGATATTTAAAATATA
2136308 ATATAACACA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (23 bp):
TAATAAAGATATTTAAAATATAC
Found at i:2137639 original size:19 final size:19
Alignment explanation
Indices: 2137615--2137651 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
2137605 AGGTATTAGC
2137615 AGTGTAGTTAGCAATGTTG
1 AGTGTAGTTAGCAATGTTG
2137634 AGTGTAGTTAGCAATGTT
1 AGTGTAGTTAGCAATGTT
2137652 ATTAGTGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.27, C:0.05, G:0.30, T:0.38
Consensus pattern (19 bp):
AGTGTAGTTAGCAATGTTG
Found at i:2140988 original size:14 final size:15
Alignment explanation
Indices: 2140964--2140992 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
2140954 TTAGTAATCT
2140964 ATATAAGTCATTTTC
1 ATATAAGTCATTTTC
2140979 ATAT-AGTCATTTTC
1 ATATAAGTCATTTTC
2140993 TGTGTTTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.31, C:0.14, G:0.07, T:0.48
Consensus pattern (15 bp):
ATATAAGTCATTTTC
Found at i:2144568 original size:29 final size:30
Alignment explanation
Indices: 2144499--2144569 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 30
2144489 TTTAACGGTA
2144499 CAGTGGTATAATTGAAACAAAAATCAAAGTT
1 CAGTGGTATAATTG-AACAAAAATCAAAGTT
* * * *
2144530 CAATGTTATAATTG-ACAAAATTGAAAGTT
1 CAGTGGTATAATTGAACAAAAATCAAAGTT
*
2144559 TAGTGGTATAA
1 CAGTGGTATAA
2144570 ACAATACAAT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
29 21 0.64
31 12 0.36
ACGTcount: A:0.45, C:0.07, G:0.17, T:0.31
Consensus pattern (30 bp):
CAGTGGTATAATTGAACAAAAATCAAAGTT
Found at i:2145640 original size:18 final size:17
Alignment explanation
Indices: 2145603--2145653 Score: 66
Period size: 18 Copynumber: 2.9 Consensus size: 17
2145593 TATGGAATTG
* *
2145603 GATTCCAATTCCTGACA
1 GATTTCAATTCCTCACA
2145620 GATTTCAATTCCTTCACA
1 GATTTCAATTCC-TCACA
2145638 GATTTCAATTTCCTCA
1 GATTTCAA-TTCCTCA
2145654 GAAACATTCC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
17 11 0.37
18 15 0.50
19 4 0.13
ACGTcount: A:0.27, C:0.27, G:0.08, T:0.37
Consensus pattern (17 bp):
GATTTCAATTCCTCACA
Found at i:2148527 original size:60 final size:59
Alignment explanation
Indices: 2148439--2148569 Score: 142
Period size: 59 Copynumber: 2.2 Consensus size: 59
2148429 GTATTATATG
** * * * *
2148439 TCCCTAAACTATAACCTTTATTTTAAATTGGTCTTTAAACTTTTTAATATT-TCAATTTCAT
1 TCCCTAAACTATAACCTTTATTCGAAATT-ATCCTTAAACTATTGAATATTAT-AATTTC-T
*
2148500 TCTC-AAACTATAA-CTTTCATTCGAAATTATCCTTAAACTATTGAATATTATAATTTCT
1 TCCCTAAACTATAACCTTT-ATTCGAAATTATCCTTAAACTATTGAATATTATAATTTCT
2148558 TCCCTAAACTAT
1 TCCCTAAACTAT
2148570 GACCCTCTTC
Statistics
Matches: 59, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
58 4 0.07
59 34 0.58
60 18 0.31
61 3 0.05
ACGTcount: A:0.34, C:0.18, G:0.03, T:0.45
Consensus pattern (59 bp):
TCCCTAAACTATAACCTTTATTCGAAATTATCCTTAAACTATTGAATATTATAATTTCT
Found at i:2148860 original size:60 final size:60
Alignment explanation
Indices: 2148748--2148890 Score: 141
Period size: 60 Copynumber: 2.4 Consensus size: 60
2148738 TATATACGTG
* * *
2148748 TAGTTTGA-GATGAAATTGGAATATTCAAAAAGTTCGGGACCAATTCAGAATGA-AGATCA
1 TAGTTTGAGGATGAAATTGAAATACTCAAAAAGTTCGGGACCAATTCAAAATGATAG-TCA
* * ** * *
2148807 TAGTTTGAGGATGAAATTGAAATGCTC-AAAAGTTTGAGGACTGATTTAAAATGATAGTTA
1 TAGTTTGAGGATGAAATTGAAATACTCAAAAAGTTCG-GGACCAATTCAAAATGATAGTCA
*
2148867 TAGTTT-AGGGATGAAATTAAAATA
1 TAGTTTGA-GGATGAAATTGAAATA
2148891 TTTAAAAGTT
Statistics
Matches: 69, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
59 17 0.25
60 50 0.72
61 2 0.03
ACGTcount: A:0.41, C:0.06, G:0.22, T:0.31
Consensus pattern (60 bp):
TAGTTTGAGGATGAAATTGAAATACTCAAAAAGTTCGGGACCAATTCAAAATGATAGTCA
Found at i:2162744 original size:13 final size:13
Alignment explanation
Indices: 2162726--2162752 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2162716 CACTAGATTC
2162726 ATCTTTATTTGCT
1 ATCTTTATTTGCT
2162739 ATCTTTATTTGCT
1 ATCTTTATTTGCT
2162752 A
1 A
2162753 GTTTTGATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.19, C:0.15, G:0.07, T:0.59
Consensus pattern (13 bp):
ATCTTTATTTGCT
Found at i:2163142 original size:21 final size:22
Alignment explanation
Indices: 2163118--2163158 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
2163108 TAATGTTCAT
*
2163118 TTTAGTATTTATTA-TTTAAGC
1 TTTAGTATTTAGTACTTTAAGC
*
2163139 TTTATTATTTAGTACTTTAA
1 TTTAGTATTTAGTACTTTAA
2163159 TTTTTGAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.29, C:0.05, G:0.07, T:0.59
Consensus pattern (22 bp):
TTTAGTATTTAGTACTTTAAGC
Found at i:2169677 original size:35 final size:34
Alignment explanation
Indices: 2169614--2169680 Score: 84
Period size: 34 Copynumber: 1.9 Consensus size: 34
2169604 GTTTCATGGT
2169614 TAAACCCCACACTTTCACGAGAAACAAACATGTG
1 TAAACCCCACACTTTCACGAGAAACAAACATGTG
*
2169648 TAAACCCCTCAGCTTTC-C-AGAAAAGCAAACATG
1 TAAACCCCACA-CTTTCACGAG-AAA-CAAACATG
2169681 GGTACTTGGG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
33 2 0.07
34 14 0.48
35 13 0.45
ACGTcount: A:0.40, C:0.30, G:0.12, T:0.18
Consensus pattern (34 bp):
TAAACCCCACACTTTCACGAGAAACAAACATGTG
Found at i:2170935 original size:2 final size:2
Alignment explanation
Indices: 2170928--2170985 Score: 116
Period size: 2 Copynumber: 29.0 Consensus size: 2
2170918 GGTAAAAACA
2170928 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2170970 AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT
2170986 TAATCTCTTA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 56 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2173301 original size:4 final size:4
Alignment explanation
Indices: 2173294--2173324 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
2173284 AATATTATCG
2173294 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATT
2173325 ATTATTATCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
ATTT
Found at i:2176881 original size:13 final size:13
Alignment explanation
Indices: 2176863--2176914 Score: 77
Period size: 13 Copynumber: 4.0 Consensus size: 13
2176853 GTCATAAATC
2176863 TATGACGCGCATT
1 TATGACGCGCATT
*
2176876 TATGACACGCATT
1 TATGACGCGCATT
*
2176889 TATGACGCACATT
1 TATGACGCGCATT
*
2176902 TATGACGCTCATT
1 TATGACGCGCATT
2176915 GCGCGTCATT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 35 1.00
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (13 bp):
TATGACGCGCATT
Found at i:2177077 original size:2 final size:2
Alignment explanation
Indices: 2177070--2177118 Score: 91
Period size: 2 Copynumber: 25.0 Consensus size: 2
2177060 TGTCGTAAAT
2177070 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2177112 TA T- TA TA
1 TA TA TA TA
2177119 GATTGACAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 45 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:2186669 original size:14 final size:14
Alignment explanation
Indices: 2186629--2186669 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
2186619 TTTTACTTTA
*
2186629 TTATATTTTTAGCAT
1 TTAT-TTTTTAGTAT
*
2186644 TTATGTTTTAGTAT
1 TTATTTTTTAGTAT
2186658 TTATTTTTTAGT
1 TTATTTTTTAGT
2186670 CTTGTCATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
14 19 0.83
15 4 0.17
ACGTcount: A:0.22, C:0.02, G:0.10, T:0.66
Consensus pattern (14 bp):
TTATTTTTTAGTAT
Found at i:2186988 original size:27 final size:27
Alignment explanation
Indices: 2186958--2187081 Score: 77
Period size: 30 Copynumber: 4.4 Consensus size: 27
2186948 GATTTGGCTT
*
2186958 ATTTATATTTCTGGTTCAGTCCTTTAA
1 ATTTATATTTCTAGTTCAGTCCTTTAA
* * * *
2186985 ATTTATGTTTTTATTTTAGTCCTTTAA
1 ATTTATATTTCTAGTTCAGTCCTTTAA
* * * *
2187012 ATTTATGTTTTTTCTATTTTAGTCATTTAA
1 ATTTA---TATTTCTAGTTCAGTCCTTTAA
* * *
2187042 GTTTATATTTTTGCTATTTTAGTCCTTTAA
1 ATTTATA--TTT-CTAGTTCAGTCCTTTAA
*
2187072 ATTTCTATTT
1 ATTTATATTT
2187082 TTACTATTTT
Statistics
Matches: 78, Mismatches: 13, Indels: 11
0.76 0.13 0.11
Matches are distributed among these distances:
27 28 0.36
28 3 0.04
29 3 0.04
30 44 0.56
ACGTcount: A:0.22, C:0.10, G:0.08, T:0.60
Consensus pattern (27 bp):
ATTTATATTTCTAGTTCAGTCCTTTAA
Found at i:2187032 original size:30 final size:30
Alignment explanation
Indices: 2186975--2187130 Score: 194
Period size: 30 Copynumber: 5.3 Consensus size: 30
2186965 TTTCTGGTTC
*
2186975 AGTCCTTTAAA-TT-TATGTTTT-TATTTT
1 AGTCCTTTAAATTTATATTTTTTCTATTTT
*
2187002 AGTCCTTTAAATTTATGTTTTTTCTATTTT
1 AGTCCTTTAAATTTATATTTTTTCTATTTT
* * *
2187032 AGTCATTTAAGTTTATATTTTTGCTATTTT
1 AGTCCTTTAAATTTATATTTTTTCTATTTT
* *
2187062 AGTCCTTTAAATTTCTATTTTTACTATTTT
1 AGTCCTTTAAATTTATATTTTTTCTATTTT
* * *
2187092 AGTCCTTTAAGTTTCTA-TTTTTATATTTT
1 AGTCCTTTAAATTTATATTTTTTCTATTTT
2187121 AGTCCTTTAA
1 AGTCCTTTAA
2187131 GTTTCTATCA
Statistics
Matches: 113, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
27 11 0.10
28 2 0.02
29 26 0.23
30 74 0.65
ACGTcount: A:0.22, C:0.10, G:0.07, T:0.60
Consensus pattern (30 bp):
AGTCCTTTAAATTTATATTTTTTCTATTTT
Found at i:2187149 original size:59 final size:56
Alignment explanation
Indices: 2186975--2187155 Score: 204
Period size: 60 Copynumber: 3.1 Consensus size: 56
2186965 TTTCTGGTTC
* * *
2186975 AGTCCTTTAA-ATTTATGTTTTTATTTTAGTCCTTTAAATTTATGTTTTTTCTATTTT
1 AGTCCTTTAAGTTTTAT-TTTTTATTTTAGTCCTTTAAATTTCT-ATTTTTCTATTTT
*
2187032 AGTCATTTAAGTTTATATTTTTGCTATTTTAGTCCTTTAAATTTCTATTTTTACTATTTT
1 AGTCCTTTAAGTTT-TATTTTT--TATTTTAGTCCTTTAAATTTCTATTTTT-CTATTTT
*
2187092 AGTCCTTTAAGTTTCTATTTTTATATTTTAGTCCTTTAAGTTTCTATCATTTT-TATTTT
1 AGTCCTTTAAGTTT-TATTTTT-TATTTTAGTCCTTTAAATTTCTAT--TTTTCTATTTT
*
2187151 GGTCC
1 AGTCC
2187156 CATAAATCAT
Statistics
Matches: 108, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
57 9 0.08
58 6 0.06
59 41 0.38
60 48 0.44
61 4 0.04
ACGTcount: A:0.21, C:0.11, G:0.08, T:0.60
Consensus pattern (56 bp):
AGTCCTTTAAGTTTTATTTTTTATTTTAGTCCTTTAAATTTCTATTTTTCTATTTT
Found at i:2191462 original size:31 final size:31
Alignment explanation
Indices: 2191427--2191533 Score: 99
Period size: 31 Copynumber: 3.3 Consensus size: 31
2191417 GACAGTTTTT
*
2191427 CTTGAAACACAAAATCTTTGAATTTGTTTCC
1 CTTGAAACACAAAATCTTTGAATCTGTTTCC
** * * *
2191458 CTTGAAACA-AAGTTTGTCTCCCTTGAAACAGTTTCT
1 CTTGAAACACAA---AATCT---TTGAATCTGTTTCC
2191494 CTTGAAACACAAAATCTTTGAATCTGTTTCC
1 CTTGAAACACAAAATCTTTGAATCTGTTTCC
2191525 CTTGAAACA
1 CTTGAAACA
2191534 AAGTTTGTCT
Statistics
Matches: 58, Mismatches: 11, Indels: 14
0.70 0.13 0.17
Matches are distributed among these distances:
30 2 0.03
31 29 0.50
33 3 0.05
34 3 0.05
36 19 0.33
37 2 0.03
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.36
Consensus pattern (31 bp):
CTTGAAACACAAAATCTTTGAATCTGTTTCC
Found at i:2191503 original size:67 final size:67
Alignment explanation
Indices: 2191395--2191590 Score: 313
Period size: 67 Copynumber: 2.9 Consensus size: 67
2191385 ATTTTACTCA
* * * *
2191395 AAACAAAGTTTGCCTCCCTTGAGACAGTTTTTCTTGAAACACAAAATCTTTGAATTTGTTTCCCT
1 AAACAAAGTTTGTCTCCCTTGAAACAGTTTCTCTTGAAACACAAAATCTTTGAATATGTTTCCCT
2191460 TG
66 TG
*
2191462 AAACAAAGTTTGTCTCCCTTGAAACAGTTTCTCTTGAAACACAAAATCTTTGAATCTGTTTCCCT
1 AAACAAAGTTTGTCTCCCTTGAAACAGTTTCTCTTGAAACACAAAATCTTTGAATATGTTTCCCT
2191527 TG
66 TG
* *
2191529 AAACAAAGTTTGTCTCCCTTGAGAA-AATTTCTATTGAAACACAAAATCTTTGAATATGTTTC
1 AAACAAAGTTTGTCTCCCTTGA-AACAGTTTCTCTTGAAACACAAAATCTTTGAATATGTTTC
2191591 TGTTGGGACC
Statistics
Matches: 121, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
67 119 0.98
68 2 0.02
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (67 bp):
AAACAAAGTTTGTCTCCCTTGAAACAGTTTCTCTTGAAACACAAAATCTTTGAATATGTTTCCCT
TG
Found at i:2193269 original size:67 final size:67
Alignment explanation
Indices: 2193094--2193776 Score: 930
Period size: 67 Copynumber: 10.2 Consensus size: 67
2193084 ACTCTAACAA
* * * * * *
2193094 TTTCCATTGAAACAAAGTTTGTCTTCATGGAGACATTTTCTCTTGAAACACAAAATCTTTGAATT
1 TTTCCCTTGAAACAAAGTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACACAAAATCTTTGAATC
2193159 TG
66 TG
* * *
2193161 TTCCCCTTGAAACAAAG-TTGTCTCCCTTGAGATAGTTTCTCTTGAAACACAAAATCTTTGACTC
1 TTTCCCTTGAAACAAAGTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACACAAAATCTTTGAATC
2193225 TG
66 TG
* * *
2193227 TTTCCCTTGAAACAAAGTTTGTCTCCCTTGAGATAGTTTCTCTTGAAAAACAAAATCTTTGAATA
1 TTTCCCTTGAAACAAAGTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACACAAAATCTTTGAATC
*
2193292 TC
66 TG
*
2193294 TTTCCCTTGAAACAAAGTTTGTCGCCCTTGAGACAGATTT-TCTTGAAACACAAAATCTTTGAAT
1 TTTCCCTTGAAACAAAGTTTGTCTCCCTTGAGACAG-TTTCTCTTGAAACACAAAATCTTTGAAT
*
2193358 ATG
65 CTG
* * * * ** * *
2193361 TTTCCCTTGAAACAAAGTTTGTCTCCCCTAAGACAATTTCTCTTGAAAGATTAAATATTTGAACC
1 TTTCCCTTGAAACAAAGTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACACAAAATCTTTGAATC
2193426 TG
66 TG
* *
2193428 TTTCCCTTGAAACAAA-TTATGTCTCCCTTGAGACAGTTTCGT-TTGAAACACAAAATCATAGAA
1 TTTCCCTTGAAACAAAGTT-TGTCTCCCTTGAGACAGTTTC-TCTTGAAACACAAAATCTTTGAA
2193491 TCTG
64 TCTG
2193495 TTTCCCTTGAAACAAAG-TTGTCTCCCTTGAGACAGTTTCTCTTGAAACACAAAATCTTTGAATC
1 TTTCCCTTGAAACAAAGTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACACAAAATCTTTGAATC
*
2193559 TA
66 TG
* * * * * *
2193561 TTTCCCTTGAAACAAAGTTTGTCTCCGTTGATACAGTTTATATTGAAACAAAAAATCTTTGAATA
1 TTTCCCTTGAAACAAAGTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACACAAAATCTTTGAATC
2193626 TG
66 TG
* * *
2193628 GTTCCCTTGAAACAAAGTTTGTCTCCCTTGAGACAATTTCTCTTGAAACACAAAATCTTTGAATT
1 TTTCCCTTGAAACAAAGTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACACAAAATCTTTGAATC
2193693 TG
66 TG
* *
2193695 TTTCCCTTGAAACAAAGTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACA-AAAGTCTTT-AAGT
1 TTTCCCTTGAAACAAAGTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACACAAAATCTTTGAA-T
*
2193758 TTG
65 CTG
*
2193761 TTTCCCTTAAAACAAA
1 TTTCCCTTGAAACAAA
2193777 TGATGCAAGC
Statistics
Matches: 546, Mismatches: 61, Indels: 19
0.87 0.10 0.03
Matches are distributed among these distances:
65 3 0.01
66 150 0.27
67 389 0.71
68 4 0.01
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (67 bp):
TTTCCCTTGAAACAAAGTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACACAAAATCTTTGAATC
TG
Found at i:2193709 original size:334 final size:334
Alignment explanation
Indices: 2193094--2193742 Score: 1009
Period size: 334 Copynumber: 1.9 Consensus size: 334
2193084 ACTCTAACAA
* * * * *
2193094 TTTCCATTGAAACAAAGTTTGTCTTCATGGAGACATTTTCTCTTGAAACACAAAATCTTTGAATT
1 TTTCCATTGAAACAAAGTTTGTCTCCATGGAGACAGTTTCTCTTGAAACACAAAATCATAGAATC
* *
2193159 TGTTCCCCTTGAAACAAAGTTGTCTCCCTTGAGATAGTTTCTCTTGAAACACAAAATCTTTGACT
66 TGTTCCCCTTGAAACAAAGTTGTCTCCCTTGAGACAGTTTCTCTTGAAACACAAAATCTTTGAAT
* * * *
2193224 CTGTTTCCCTTGAAACAAAGTTTGTCTCCCTTGAGATAGTTTCTCTTGAAAAACAAAATCTTTGA
131 CTATTTCCCTTGAAACAAAGTTTGTCTCCCTTGAGACAGTTTATATTGAAAAACAAAATCTTTGA
*
2193289 ATATCTTTCCCTTGAAACAAAGTTTGTCGCCCTTGAGACAGATTTTCTTGAAACACAAAATCTTT
196 ATATCGTTCCCTTGAAACAAAGTTTGTCGCCCTTGAGACAGATTTTCTTGAAACACAAAATCTTT
2193354 GAATATGTTTCCCTTGAAACAAAGTTTGTCTCCCCTAAGACAATTTCTCTTGAAAGATTAAATAT
261 GAATATGTTTCCCTTGAAACAAAGTTTGTCTCCCCTAAGACAATTTCTCTTGAAAGATTAAATAT
2193419 TTGAACCTG
326 TTGAACCTG
* * *
2193428 TTTCCCTTGAAACAAA-TTATGTCTCCCTTGAGACAGTTTCGT-TTGAAACACAAAATCATAGAA
1 TTTCCATTGAAACAAAGTT-TGTCTCCATGGAGACAGTTTC-TCTTGAAACACAAAATCATAGAA
*
2193491 TCTGTTTCCCTTGAAACAAAGTTGTCTCCCTTGAGACAGTTTCTCTTGAAACACAAAATCTTTGA
64 TCTGTTCCCCTTGAAACAAAGTTGTCTCCCTTGAGACAGTTTCTCTTGAAACACAAAATCTTTGA
* *
2193556 ATCTATTTCCCTTGAAACAAAGTTTGTCTCCGTTGATACAGTTTATATTGAAACAA-AAAATCTT
129 ATCTATTTCCCTTGAAACAAAGTTTGTCTCCCTTGAGACAGTTTATATTGAAA-AACAAAATCTT
* *
2193620 TGAATATGGTTCCCTTGAAACAAAGTTTGTCTCCCTTGAGACA-ATTTCTCTTGAAACACAAAAT
193 TGAATATCGTTCCCTTGAAACAAAGTTTGTCGCCCTTGAGACAGATTT-TCTTGAAACACAAAAT
* * * * *
2193684 CTTTGAATTTGTTTCCCTTGAAACAAAGTTTGTCTCTCTTGAGACAGTTTCTCTTGAAA
257 CTTTGAATATGTTTCCCTTGAAACAAAGTTTGTCTCCCCTAAGACAATTTCTCTTGAAA
2193743 CAAAAGTCTT
Statistics
Matches: 286, Mismatches: 25, Indels: 8
0.90 0.08 0.03
Matches are distributed among these distances:
333 6 0.02
334 277 0.97
335 3 0.01
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (334 bp):
TTTCCATTGAAACAAAGTTTGTCTCCATGGAGACAGTTTCTCTTGAAACACAAAATCATAGAATC
TGTTCCCCTTGAAACAAAGTTGTCTCCCTTGAGACAGTTTCTCTTGAAACACAAAATCTTTGAAT
CTATTTCCCTTGAAACAAAGTTTGTCTCCCTTGAGACAGTTTATATTGAAAAACAAAATCTTTGA
ATATCGTTCCCTTGAAACAAAGTTTGTCGCCCTTGAGACAGATTTTCTTGAAACACAAAATCTTT
GAATATGTTTCCCTTGAAACAAAGTTTGTCTCCCCTAAGACAATTTCTCTTGAAAGATTAAATAT
TTGAACCTG
Found at i:2196595 original size:36 final size:35
Alignment explanation
Indices: 2196496--2196678 Score: 120
Period size: 37 Copynumber: 5.3 Consensus size: 35
2196486 CTTTCAGATC
* * *
2196496 GTTTCCCTTGAAACAAAACTTTGTCTCTCTTGAGGCA
1 GTTTCCCTTGAAAC--AATTTTGTCTCACTTGAGACA
**
2196533 GTTTCCCTTGAAACACA---AATCT---TTGAGATCA
1 GTTTCCCTTGAAACA-ATTTTGTCTCACTTGAGA-CA
2196564 -TTTCCCTTGAAACGAATTTTGTCTCACTTGAGACA
1 GTTTCCCTTGAAAC-AATTTTGTCTCACTTGAGACA
*
2196599 GTTTCCCTT-AAA-AA-ATTGTCT-ACTTGAGACA
1 GTTTCCCTTGAAACAATTTTGTCTCACTTGAGACA
* * * *
2196630 TTTTCTCC-TGAAACAAAGTTTTATCTCTCTTGAGATA
1 GTTTC-CCTTGAAAC-AA-TTTTGTCTCACTTGAGACA
2196667 GTTTCCCTTGAA
1 GTTTCCCTTGAA
2196679 GCACCAATAT
Statistics
Matches: 116, Mismatches: 12, Indels: 36
0.71 0.07 0.22
Matches are distributed among these distances:
30 19 0.16
31 18 0.16
32 11 0.09
33 8 0.07
34 2 0.02
35 6 0.05
36 22 0.19
37 30 0.26
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (35 bp):
GTTTCCCTTGAAACAATTTTGTCTCACTTGAGACA
Found at i:2196604 original size:66 final size:66
Alignment explanation
Indices: 2196438--2196941 Score: 420
Period size: 66 Copynumber: 7.6 Consensus size: 66
2196428 GCCTTACATC
* ** * * * * *
2196438 AACAAAGTTTTGTCTCTCTTGAGAGAGAGTTTCTATCGAATCACTAACCTTTCAGATCGTTTCCC
1 AACAAA-TTTTGTCTCTCTT--GAGACAGTTTCCCTTGAAACACAAATCTTTGAGATCGTTTCCC
2196503 TTGA
63 TTGA
* * *
2196507 AACAAAACTTTGTCTCTCTTGAGGCAGTTTCCCTTGAAACACAAATCTTTGAGATCATTTCCCTT
1 AAC-AAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACAAATCTTTGAGATCGTTTCCCTT
2196572 GA
65 GA
* * * *
2196574 AACGAATTTTGTCTCACTTGAGACAGTTTCCCTT-AAA-A-AATTGTCTACTTGAGA-CATTTTC
1 AACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACAA--ATCT--TTGAGATC-GTTTC
2196635 TCC-TGA
61 -CCTTGA
* * * * *
2196641 AACAAAGTTTTATCTCTCTTGAGATAGTTTCCCTTGAAGCACCAATATTTGA-ATCTGTTTCCCT
1 AACAAA-TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACAAATCTTTGAGATC-GTTTCCCT
2196705 TGA
64 TGA
* * *
2196708 AACAAATTTTGTCTC-CTTTGAGACAGTTTCCCTTGAAACACCAATCTTTGA-ATTTGTTTTCCT
1 AACAAATTTTGTCTCTC-TTGAGACAGTTTCCCTTGAAACACAAATCTTTGAGA-TCGTTTCCCT
*
2196771 TAA
64 TGA
* * * * ** *
2196774 AACAATTTTTTTCTCCCTTGAGACAATTTATCTTGAAACATAAATCTTTGAGATCG-TTCCCTTG
1 AACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACAAATCTTTGAGATCGTTTCCCTTG
2196838 A
66 A
* * * * * * *
2196839 AACGAA-TTTG-GTCTCTTGGGATAGTTTCCCTTGAAACACCAACCTTTGAGATTGTTTCCCTTG
1 AACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACAAATCTTTGAGATCGTTTCCCTTG
2196902 A
66 A
** *
2196903 AACATGTTTTGTCTCTCTTGAGA-ATGTTTCTCTTGAAAC
1 AACAAATTTTGTCTCTCTTGAGACA-GTTTCCCTTGAAAC
2196942 GATTAACCCT
Statistics
Matches: 350, Mismatches: 64, Indels: 45
0.76 0.14 0.10
Matches are distributed among these distances:
63 35 0.10
64 16 0.05
65 23 0.07
66 146 0.42
67 79 0.23
68 27 0.08
69 19 0.05
70 4 0.01
71 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (66 bp):
AACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACAAATCTTTGAGATCGTTTCCCTTG
A
Found at i:2196768 original size:134 final size:131
Alignment explanation
Indices: 2196497--2196941 Score: 438
Period size: 134 Copynumber: 3.4 Consensus size: 131
2196487 TTTCAGATCG
** *
2196497 TTTCCCTTGAAACAAAACTTTGTCTCTCTTGAGGCAGTTTCCCTTGAAACACAAATCTTTGAGAT
1 TTTCCC-TGAAAC-AAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACAAATCTTTGAGAT
* * ****
2196562 CATTTCCCTTGAAACGAATTTTGTCTCACTTGAGACAGTTTCCCTT-AAAAAATTGTCTACTTGA
64 CGTTTCCCTTGAAACGAATTTTGTCTC-CTTGAGACAGTTTCCCTTGAAACACCAATCT--TTGA
**
2196626 GA-CAT
126 GATTGT
* * * * *
2196631 TTTCTCCTGAAACAAAGTTTTATCTCTCTTGAGATAGTTTCCCTTGAAGCACCAATATTTGA-AT
1 TTTC-CCTGAAAC-AAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACAAATCTTTGAGAT
*
2196695 CTGTTTCCCTTGAAACAAATTTTGTCTCCTTTGAGACAGTTTCCCTTGAAACACCAATCTTTGA-
64 C-GTTTCCCTTGAAACGAATTTTGTCTCC-TTGAGACAGTTTCCCTTGAAACACCAATCTTTGAG
2196759 ATTTGT
127 A-TTGT
* * * * * * ** *
2196765 TTTCCTTAAAACAATTTTTTTCTCCCTTGAGACAATTTATCTTGAAACATAAATCTTTGAGATCG
1 TTTCCCTGAAACAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACAAATCTTTGAGATCG
* * * *
2196830 -TTCCCTTGAAACGAATTTGGTCT-CTTGGGATAGTTTCCCTTGAAACACCAACCTTTGAGATTG
66 TTTCCCTTGAAACGAATTTTGTCTCCTTGAGACAGTTTCCCTTGAAACACCAATCTTTGAGATTG
2196893 -
131 T
* *
2196893 TTTCCCTTGAAACATGTTTTGTCTCTCTTGAGA-ATGTTTCTCTTGAAAC
1 TTTCCC-TGAAACAAGTTTTGTCTCTCTTGAGACA-GTTTCCCTTGAAAC
2196942 GATTAACCCT
Statistics
Matches: 258, Mismatches: 43, Indels: 25
0.79 0.13 0.08
Matches are distributed among these distances:
128 6 0.02
129 67 0.26
130 2 0.01
131 21 0.08
132 39 0.15
133 17 0.07
134 97 0.38
135 9 0.03
ACGTcount: A:0.27, C:0.21, G:0.13, T:0.39
Consensus pattern (131 bp):
TTTCCCTGAAACAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACAAATCTTTGAGATCG
TTTCCCTTGAAACGAATTTTGTCTCCTTGAGACAGTTTCCCTTGAAACACCAATCTTTGAGATTG
T
Found at i:2197165 original size:3 final size:3
Alignment explanation
Indices: 2197159--2197197 Score: 60
Period size: 3 Copynumber: 12.3 Consensus size: 3
2197149 TTATTTACTA
2197159 TAT TAT TAT TAT TAT TAT TAT TAAT TAT TAT TAAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT T-AT TAT T
2197198 TATTTTACAT
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
3 28 0.82
4 6 0.18
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:2197187 original size:10 final size:9
Alignment explanation
Indices: 2197159--2197197 Score: 60
Period size: 10 Copynumber: 4.1 Consensus size: 9
2197149 TTATTTACTA
2197159 TATTATTAT
1 TATTATTAT
2197168 TATTATTAT
1 TATTATTAT
2197177 TATTAATTAT
1 TATT-ATTAT
2197187 TATTAATTAT
1 TATT-ATTAT
2197197 T
1 T
2197198 TATTTTACAT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
9 13 0.45
10 16 0.55
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (9 bp):
TATTATTAT
Found at i:2198385 original size:14 final size:14
Alignment explanation
Indices: 2198368--2198397 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
2198358 TTTTTAGCAC
*
2198368 TTATGTTTTTGTAT
1 TTATGTTTTAGTAT
2198382 TTATGTTTTAGTAT
1 TTATGTTTTAGTAT
2198396 TT
1 TT
2198398 TCATTATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.13, T:0.70
Consensus pattern (14 bp):
TTATGTTTTAGTAT
Found at i:2198755 original size:30 final size:30
Alignment explanation
Indices: 2198693--2198804 Score: 152
Period size: 30 Copynumber: 3.7 Consensus size: 30
2198683 ATATTTATGG
*
2198693 TTTAGTCCTTTAAATTTATGGTTTTTGTTAT
1 TTTAGTCCTTTAAATTTAT-GTTTTTGCTAT
*
2198724 TTTAGTCCTTTAAATTTATGTTTTAGCTAT
1 TTTAGTCCTTTAAATTTATGTTTTTGCTAT
* * *
2198754 TTTAGTCCTTTAAGTTTATATTTTTTCTAT
1 TTTAGTCCTTTAAATTTATGTTTTTGCTAT
* *
2198784 TTTAGTCATTTAAGTTTATGT
1 TTTAGTCCTTTAAATTTATGT
2198805 CATTTTTATT
Statistics
Matches: 73, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
30 54 0.74
31 19 0.26
ACGTcount: A:0.21, C:0.08, G:0.11, T:0.60
Consensus pattern (30 bp):
TTTAGTCCTTTAAATTTATGTTTTTGCTAT
Found at i:2198815 original size:30 final size:30
Alignment explanation
Indices: 2198693--2198821 Score: 145
Period size: 30 Copynumber: 4.3 Consensus size: 30
2198683 ATATTTATGG
2198693 TTTAGTCCTTTAAATTTATGGTTTTTGTTAT
1 TTTAGTCCTTTAAATTTAT-GTTTTTGTTAT
* *
2198724 TTTAGTCCTTTAAATTTATGTTTTAGCTAT
1 TTTAGTCCTTTAAATTTATGTTTTTGTTAT
* *
2198754 TTTAGTCCTTTAAGTTTATATTTTT-TCTAT
1 TTTAGTCCTTTAAATTTATGTTTTTGT-TAT
* * *
2198784 TTTAGTCATTTAAGTTTATGTCATTT-TTAT
1 TTTAGTCCTTTAAATTTATGT-TTTTGTTAT
*
2198814 TTTGGTCC
1 TTTAGTCC
2198822 CATAAATCAT
Statistics
Matches: 85, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
30 62 0.73
31 23 0.27
ACGTcount: A:0.20, C:0.09, G:0.11, T:0.60
Consensus pattern (30 bp):
TTTAGTCCTTTAAATTTATGTTTTTGTTAT
Found at i:2205612 original size:59 final size:59
Alignment explanation
Indices: 2205528--2205641 Score: 183
Period size: 59 Copynumber: 1.9 Consensus size: 59
2205518 TCTGGAATAC
** * * *
2205528 ACTTAAGGATACCTAGTGTATATGGTGGGCACGACCTTATGTGTCATATTCGGGACTGT
1 ACTTAAGGATACCTAGTACAGATGGTGGACACGACCTTATGTGTCATACTCGGGACTGT
2205587 ACTTAAGGATACCTAGTACAGATGGTGGACACGACCTTATGTGTCATACTCGGGA
1 ACTTAAGGATACCTAGTACAGATGGTGGACACGACCTTATGTGTCATACTCGGGA
2205642 TATCACTACG
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
59 50 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (59 bp):
ACTTAAGGATACCTAGTACAGATGGTGGACACGACCTTATGTGTCATACTCGGGACTGT
Found at i:2209701 original size:10 final size:10
Alignment explanation
Indices: 2209688--2209716 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
2209678 TCATTTTAGA
2209688 TGCATATAGT
1 TGCATATAGT
2209698 TGCATATAGT
1 TGCATATAGT
2209708 TGCAT-TAGT
1 TGCATATAGT
2209717 GGTGGTTGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 4 0.21
10 15 0.79
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.41
Consensus pattern (10 bp):
TGCATATAGT
Found at i:2225032 original size:2 final size:2
Alignment explanation
Indices: 2225020--2225061 Score: 75
Period size: 2 Copynumber: 20.5 Consensus size: 2
2225010 CAAAACATAC
2225020 AT AT CAT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2225062 CACGTTCTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 37 0.95
3 2 0.05
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2225978 original size:90 final size:90
Alignment explanation
Indices: 2225825--2226004 Score: 279
Period size: 90 Copynumber: 2.0 Consensus size: 90
2225815 GACCTGACGC
* **
2225825 ATCTTTTTATATCCGAGTTACCCTAATCACATTAGGGATTTTATTATTTTTAATTAATTAAATCT
1 ATCTTTTTATATCCAAGTTACCCTAATCACATTAGGGATTTTATTATTTCAAATTAATTAAATCT
* *
2225890 ATATTTAATTATTTGGAATTTAATA
66 ATATTTAATTAATTGGAATTAAATA
* * *
2225915 ATCTTTTTATATCTAAGTTGCCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCT
1 ATCTTTTTATATCCAAGTTACCCTAATCACATTAGGGATTTTATTATTTCAAATTAATTAAATCT
*
2225980 ATTTTTAATTAATTGGAATTAAATA
66 ATATTTAATTAATTGGAATTAAATA
2226005 TTTGGGATTA
Statistics
Matches: 81, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
90 81 1.00
ACGTcount: A:0.34, C:0.09, G:0.08, T:0.48
Consensus pattern (90 bp):
ATCTTTTTATATCCAAGTTACCCTAATCACATTAGGGATTTTATTATTTCAAATTAATTAAATCT
ATATTTAATTAATTGGAATTAAATA
Found at i:2232312 original size:18 final size:19
Alignment explanation
Indices: 2232289--2232331 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
2232279 CATATACCCT
2232289 AAATAAAAAAAT-AAACAA
1 AAATAAAAAAATAAAACAA
* *
2232307 AAAT-AAAGAATAAAATAA
1 AAATAAAAAAATAAAACAA
2232325 AAATAAA
1 AAATAAA
2232332 GAACTCTGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 6 0.29
18 13 0.62
19 2 0.10
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.14
Consensus pattern (19 bp):
AAATAAAAAAATAAAACAA
Found at i:2243183 original size:3 final size:3
Alignment explanation
Indices: 2243177--2243214 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
2243167 AAAAATAATA
* *
2243177 ATT ATT ATT ATT AAT ATT ATT ATT AAT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
2243215 AATGGGTCCG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:2243194 original size:12 final size:12
Alignment explanation
Indices: 2243179--2243213 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
2243169 AAATAATAAT
2243179 TATTATTATTAA
1 TATTATTATTAA
2243191 TATTATTATTAA
1 TATTATTATTAA
2243203 TATTATTATTA
1 TATTATTATTA
2243214 TAATGGGTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TATTATTATTAA
Found at i:2243838 original size:81 final size:82
Alignment explanation
Indices: 2243575--2243831 Score: 390
Period size: 82 Copynumber: 3.1 Consensus size: 82
2243565 GGTTTGCTCT
** * *
2243575 ACTCTTCTTTCGGGGGAGATCAAACTTGATATGTTCCTCTTTTTCGGGTAATCAGATCAACATTG
1 ACTCTTCTTTTAGGGGAGATCAAACTTGATATGTTCCTCTTTTTCGGGTAGTCAGATCAACTTTG
* **
2243640 GAAGACGGGTCTGCTCC
66 GAAGACGAGTCCACTCC
* *
2243657 ACTCTTCTTTTAGGGGAGATCAAAATTGATATGTTCCT-TTTTTCGGGTAGTCAGATTAACTTTG
1 ACTCTTCTTTTAGGGGAGATCAAACTTGATATGTTCCTCTTTTTCGGGTAGTCAGATCAACTTTG
*
2243721 GAAGATGAGTCCACTCC
66 GAAGACGAGTCCACTCC
* *
2243738 ACTCTTTTTTTAGGGGAGATCAAACTTGATATGTTCCTCTTTCTCGGGTAGTCAGATCAACTTTG
1 ACTCTTCTTTTAGGGGAGATCAAACTTGATATGTTCCTCTTTTTCGGGTAGTCAGATCAACTTTG
2243803 GAAGACGAGTCCACTCC
66 GAAGACGAGTCCACTCC
*
2243820 ACTATTCTTTTA
1 ACTCTTCTTTTA
2243832 CGGAGATAAG
Statistics
Matches: 157, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
81 72 0.46
82 85 0.54
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.36
Consensus pattern (82 bp):
ACTCTTCTTTTAGGGGAGATCAAACTTGATATGTTCCTCTTTTTCGGGTAGTCAGATCAACTTTG
GAAGACGAGTCCACTCC
Found at i:2243893 original size:137 final size:137
Alignment explanation
Indices: 2243716--2243999 Score: 356
Period size: 137 Copynumber: 2.1 Consensus size: 137
2243706 GTCAGATTAA
* *
2243716 CTTTGGAAGATGAGTCCACTCCACTCTTTTTTTAGGGGAGATCAAACTTGATATGTTCCTCTTTC
1 CTTTGGAAGATGAGTCCACTCCACTCTTTTTTCAGGGGAGATCAAACTTGATATGTTCCCCTTTC
* * * * *
2243781 TCGGGTAGTCAGATCAACT-TTGGAAGACGAGTC-CACTCCACTATTCTTTTACGGAGATAAGAC
66 TCGGGTAGTCACATCAA-TGTTGGAAAACAAGTCTCA-TCCACTATTCTTTCAAGGAGATAAGAC
2243844 TCAAGAAAT
129 TCAAGAAAT
* ** * * * * *
2243853 CTTTGGAAGATGGGTCTGCTTCACTCTTTTTTCAGGGGAGATTAGACTTGATTTGTTCCCCTTTT
1 CTTTGGAAGATGAGTCCACTCCACTCTTTTTTCAGGGGAGATCAAACTTGATATGTTCCCCTTTC
* * *
2243918 TTGGGTAGTCACATCAATGTTGGAAAACAAGTCTTATCCACTCTTCTTTCAAGGAGATAAGACTC
66 TCGGGTAGTCACATCAATGTTGGAAAACAAGTCTCATCCACTATTCTTTCAAGGAGATAAGACTC
*
2243983 GAGAAAT
131 AAGAAAT
*
2243990 CTTTTGAAGA
1 CTTTGGAAGA
2244000 CGTGTAAAAT
Statistics
Matches: 125, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
136 1 0.01
137 123 0.98
138 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.34
Consensus pattern (137 bp):
CTTTGGAAGATGAGTCCACTCCACTCTTTTTTCAGGGGAGATCAAACTTGATATGTTCCCCTTTC
TCGGGTAGTCACATCAATGTTGGAAAACAAGTCTCATCCACTATTCTTTCAAGGAGATAAGACTC
AAGAAAT
Found at i:2244440 original size:45 final size:45
Alignment explanation
Indices: 2244391--2244595 Score: 167
Period size: 45 Copynumber: 4.6 Consensus size: 45
2244381 AGTAAAAAAG
* * *
2244391 GACAATACTAAATGATTGAAC-CCTCTTTAGGAGAAAGTCAATGAA
1 GACAACACTAAAAGATTG-ACTCCTCTTCAGGAGAAAGTCAATGAA
* * * *
2244436 GACAACACTAAAAGATTGTCTCCTCTTCATGAGAAAGTCAAGGAG
1 GACAACACTAAAAGATTGACTCCTCTTCAGGAGAAAGTCAATGAA
* * *
2244481 GATAACAC-AGAAGGATTGACTCCTCTTC-GCGATAAAGTCAA-GAAA
1 GACAACACTA-AAAGATTGACTCCTCTTCAG-GAGAAAGTCAATG-AA
* *
2244526 GATAACACTAAAAGATTGACTCCTCTTC-GTAAGAAAGTCAA-GAA
1 GACAACACTAAAAGATTGACTCCTCTTCAG-GAGAAAGTCAATGAA
* *
2244570 TG---ACATTGAAAGATTGACTCCTCTTC
1 -GACAACACTAAAAGATTGACTCCTCTTC
2244596 GAGAGACAGT
Statistics
Matches: 135, Mismatches: 19, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
42 22 0.16
44 5 0.04
45 107 0.79
46 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24
Consensus pattern (45 bp):
GACAACACTAAAAGATTGACTCCTCTTCAGGAGAAAGTCAATGAA
Found at i:2244470 original size:90 final size:90
Alignment explanation
Indices: 2244376--2244563 Score: 204
Period size: 90 Copynumber: 2.1 Consensus size: 90
2244366 TCCTCTCCGC
* *
2244376 GAGAAAGTAAAAAAGGACAATACTA-AATGATTGAAC-CCTCTTTAG-GAGAAAGTCAATG-AAG
1 GAGAAAGTAAAAAAGGACAACAC-AGAAGGATTG-ACTCCTC-TTAGCGAGAAAGTCAA-GAAAG
*
2244437 ACAACACTAAAAGATTGTCTCCTCTTCAT
62 ACAACACTAAAAGATTGACTCCTCTTCAT
* ** * * * *
2244466 GAGAAAGTCAAGGAGGATAACACAGAAGGATTGACTCCTCTTCGCGATAAAGTCAAGAAAGATAA
1 GAGAAAGTAAAAAAGGACAACACAGAAGGATTGACTCCTCTTAGCGAGAAAGTCAAGAAAGACAA
*
2244531 CACTAAAAGATTGACTCCTCTTCGT
66 CACTAAAAGATTGACTCCTCTTCAT
*
2244556 AAGAAAGT
1 GAGAAAGT
2244564 CAAGAATGAC
Statistics
Matches: 82, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
89 7 0.09
90 75 0.91
ACGTcount: A:0.42, C:0.17, G:0.19, T:0.22
Consensus pattern (90 bp):
GAGAAAGTAAAAAAGGACAACACAGAAGGATTGACTCCTCTTAGCGAGAAAGTCAAGAAAGACAA
CACTAAAAGATTGACTCCTCTTCAT
Found at i:2244564 original size:90 final size:87
Alignment explanation
Indices: 2244424--2244596 Score: 231
Period size: 90 Copynumber: 2.0 Consensus size: 87
2244414 TCTTTAGGAG
* *
2244424 AAAGTCAATGAAGACAACACTAAAAGATTGTCTCCTCTTCATGAGAAAGTCAAGGAGGATAACAC
1 AAAGTCAATGAAGACAACACTAAAAGATTGACTCCTCTTCATAAGAAAGTCAA-GA--ATAACAC
*
2244489 AGAAGGATTGACTCCTCTTCGCGAT
63 AGAAAGATTGACTCCTCTTCGCGAT
* * * **
2244514 AAAGTCAA-GAAAGATAACACTAAAAGATTGACTCCTCTTCGTAAGAAAGTCAAGAATGACATTG
1 AAAGTCAATG-AAGACAACACTAAAAGATTGACTCCTCTTCATAAGAAAGTCAAGAATAACACAG
2244578 AAAGATTGACTCCTCTTCG
65 AAAGATTGACTCCTCTTCG
2244597 AGAGACAGTC
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
87 24 0.32
89 3 0.04
90 47 0.64
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.23
Consensus pattern (87 bp):
AAAGTCAATGAAGACAACACTAAAAGATTGACTCCTCTTCATAAGAAAGTCAAGAATAACACAGA
AAGATTGACTCCTCTTCGCGAT
Found at i:2244595 original size:42 final size:43
Alignment explanation
Indices: 2244421--2244616 Score: 189
Period size: 45 Copynumber: 4.5 Consensus size: 43
2244411 CCCTCTTTAG
* * * *
2244421 GAGAAAGTCAATGAAGACAACACTAAAAGATTGTCTCCTCTTCAT
1 GAGAAAGTCAA-G-AGATAACACTGAAAGATTGACTCCTCTTCGT
* * *
2244466 GAGAAAGTCAAGGAGGATAACACAGAAGGATTGACTCCTCTTCGC
1 GAGAAAGTCAA-GA-GATAACACTGAAAGATTGACTCCTCTTCGT
* *
2244511 GATAAAGTCAAGAAAGATAACACTAAAAGATTGACTCCTCTTCGT
1 GAGAAAGTCAAG--AGATAACACTGAAAGATTGACTCCTCTTCGT
* * * *
2244556 AAGAAAGTCAAGA-ATGACATTGAAAGATTGACTCCTCTTCGA
1 GAGAAAGTCAAGAGATAACACTGAAAGATTGACTCCTCTTCGT
* *
2244598 GAGACAGTCAGGA-ATAACA
1 GAGAAAGTCAAGAGATAACA
2244617 AAGATTAACT
Statistics
Matches: 125, Mismatches: 23, Indels: 9
0.80 0.15 0.06
Matches are distributed among these distances:
42 40 0.32
43 1 0.01
44 2 0.02
45 81 0.65
46 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.20, T:0.21
Consensus pattern (43 bp):
GAGAAAGTCAAGAGATAACACTGAAAGATTGACTCCTCTTCGT
Found at i:2244632 original size:38 final size:37
Alignment explanation
Indices: 2244578--2244875 Score: 271
Period size: 38 Copynumber: 7.8 Consensus size: 37
2244568 AATGACATTG
* *
2244578 AAAGATTGACTCCTCTTCGA-GAGACAGTCAGGAATAAC
1 AAAGATTGACTTCTCTTC-ACGAGA-AGTCAAGAATAAC
*
2244616 AAAGATTAACTTCTCTTCACGAAGAAGTCAAGAATAAC
1 AAAGATTGACTTCTCTTCACG-AGAAGTCAAGAATAAC
* * *
2244654 ATTA-ATTGACTTCTCCTT-ACGAGGAAGTCAAGAATTAG
1 A-AAGATTGACTTCT-CTTCACGA-GAAGTCAAGAATAAC
** * *
2244692 AAAGATCAACTTCTTTTCACGAGGAAGTCAAGAATAAA
1 AAAGATTGACTTCTCTTCACGA-GAAGTCAAGAATAAC
** * *
2244730 AAAGATCAAATTCTCTTCACGAGGAAGTCAAGAATACC
1 AAAGATTGACTTCTCTTCACGA-GAAGTCAAGAATAAC
* *
2244768 AAAGATCGACTTCTCTTCACGAGAAAGTCAAGAGTAAC
1 AAAGATTGACTTCTCTTCACGAG-AAGTCAAGAATAAC
* * * *
2244806 AAAGCTTGACTTCTCCTCACAAGGAAGTCAAGAGA-AAT
1 AAAGATTGACTTCTCTTCACGA-GAAGTCAAGA-ATAAC
*
2244844 AAAGATTGACTTTTCTTCACGAGGAAGTCAAG
1 AAAGATTGACTTCTCTTCACGA-GAAGTCAAG
2244876 TTGAAGCTTC
Statistics
Matches: 219, Mismatches: 31, Indels: 20
0.81 0.11 0.07
Matches are distributed among these distances:
37 6 0.03
38 205 0.94
39 8 0.04
ACGTcount: A:0.40, C:0.19, G:0.18, T:0.24
Consensus pattern (37 bp):
AAAGATTGACTTCTCTTCACGAGAAGTCAAGAATAAC
Found at i:2244818 original size:114 final size:114
Alignment explanation
Indices: 2244603--2244875 Score: 309
Period size: 114 Copynumber: 2.4 Consensus size: 114
2244593 TTCGAGAGAC
* * * * *
2244603 AGTCAGGAATAACAAAGATTAACTTCTCTTCACGAAGAAGTCAAGAATAACATTAATTGACTTCT
1 AGTCAAGAATAAAAAAGATTAACTTCTCTTCACGAGGAAGTCAAGAATAACATAAATCGACTTCT
* * * ** *
2244668 CCTTACGAGGAAGTCAAGAATTAGAAAGATCAACTTCTTTTCACGAGGA
66 CCTTACGAGAAAGTCAAGAATAACAAAGATCAACTTCTCCTCACAAGGA
* * *
2244717 AGTCAAGAATAAAAAAGATCAAATTCTCTTCACGAGGAAGTCAAGAATACCA-AAGATCGACTTC
1 AGTCAAGAATAAAAAAGATTAACTTCTCTTCACGAGGAAGTCAAGAATAACATAA-ATCGACTTC
* * **
2244781 T-CTTCACGAGAAAGTCAAGAGTAACAAAGCTTGACTTCTCCTCACAAGGA
65 TCCTT-ACGAGAAAGTCAAGAATAACAAAGATCAACTTCTCCTCACAAGGA
* * *
2244831 AGTCAAGAGA-AATAAAGATTGACTTTTCTTCACGAGGAAGTCAAG
1 AGTCAAGA-ATAAAAAAGATTAACTTCTCTTCACGAGGAAGTCAAG
2244876 TTGAAGCTTC
Statistics
Matches: 133, Mismatches: 23, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
113 4 0.03
114 128 0.96
115 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.24
Consensus pattern (114 bp):
AGTCAAGAATAAAAAAGATTAACTTCTCTTCACGAGGAAGTCAAGAATAACATAAATCGACTTCT
CCTTACGAGAAAGTCAAGAATAACAAAGATCAACTTCTCCTCACAAGGA
Found at i:2283912 original size:204 final size:204
Alignment explanation
Indices: 2283562--2283972 Score: 822
Period size: 204 Copynumber: 2.0 Consensus size: 204
2283552 CTTCGCGCTG
2283562 AGGACGTCTGGTCGTATTTTACCGGTTTGATTCGACGTGATTCCTTCTTGATGAGGACGACTATT
1 AGGACGTCTGGTCGTATTTTACCGGTTTGATTCGACGTGATTCCTTCTTGATGAGGACGACTATT
2283627 CGTTCTTTAAAAATGTGAATCTAAAGACAACATTGTTCCTTCTTTATGAGGAAGTATTGTAATAC
66 CGTTCTTTAAAAATGTGAATCTAAAGACAACATTGTTCCTTCTTTATGAGGAAGTATTGTAATAC
2283692 CCCAAAATTTTGTTTAGTGACCAAATTATAAGTTTTGAAAGTTTAGTGGCTAAGTAGAAAATTAG
131 CCCAAAATTTTGTTTAGTGACCAAATTATAAGTTTTGAAAGTTTAGTGGCTAAGTAGAAAATTAG
2283757 GAAAAGTTT
196 GAAAAGTTT
2283766 AGGACGTCTGGTCGTATTTTACCGGTTTGATTCGACGTGATTCCTTCTTGATGAGGACGACTATT
1 AGGACGTCTGGTCGTATTTTACCGGTTTGATTCGACGTGATTCCTTCTTGATGAGGACGACTATT
2283831 CGTTCTTTAAAAATGTGAATCTAAAGACAACATTGTTCCTTCTTTATGAGGAAGTATTGTAATAC
66 CGTTCTTTAAAAATGTGAATCTAAAGACAACATTGTTCCTTCTTTATGAGGAAGTATTGTAATAC
2283896 CCCAAAATTTTGTTTAGTGACCAAATTATAAGTTTTGAAAGTTTAGTGGCTAAGTAGAAAATTAG
131 CCCAAAATTTTGTTTAGTGACCAAATTATAAGTTTTGAAAGTTTAGTGGCTAAGTAGAAAATTAG
2283961 GAAAAGTTT
196 GAAAAGTTT
2283970 AGG
1 AGG
2283973 GACCTAAGTA
Statistics
Matches: 207, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
204 207 1.00
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.36
Consensus pattern (204 bp):
AGGACGTCTGGTCGTATTTTACCGGTTTGATTCGACGTGATTCCTTCTTGATGAGGACGACTATT
CGTTCTTTAAAAATGTGAATCTAAAGACAACATTGTTCCTTCTTTATGAGGAAGTATTGTAATAC
CCCAAAATTTTGTTTAGTGACCAAATTATAAGTTTTGAAAGTTTAGTGGCTAAGTAGAAAATTAG
GAAAAGTTT
Found at i:2294178 original size:23 final size:22
Alignment explanation
Indices: 2294152--2294204 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 22
2294142 GGAGGTATCT
2294152 ATACCCCCTTTGAATGGGTACCG
1 ATACCCCC-TTGAATGGGTACCG
2294175 ATACCCTCCTTGAATGGGTACCG
1 ATACCC-CCTTGAATGGGTACCG
2294198 ATACCCC
1 ATACCCC
2294205 TACATGAGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
22 1 0.03
23 26 0.90
24 2 0.07
ACGTcount: A:0.23, C:0.34, G:0.19, T:0.25
Consensus pattern (22 bp):
ATACCCCCTTGAATGGGTACCG
Found at i:2296762 original size:21 final size:22
Alignment explanation
Indices: 2296721--2296765 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
2296711 CAGATTGCCC
*
2296721 AGAGGGTATCGATACCCCCACA
1 AGAGGGTACCGATACCCCCACA
2296743 AGAGGGTACCGATA-CCCCACA
1 AGAGGGTACCGATACCCCCACA
2296764 AG
1 AG
2296766 TAAGATTTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.33, C:0.31, G:0.24, T:0.11
Consensus pattern (22 bp):
AGAGGGTACCGATACCCCCACA
Found at i:2301301 original size:168 final size:168
Alignment explanation
Indices: 2301023--2301358 Score: 672
Period size: 168 Copynumber: 2.0 Consensus size: 168
2301013 AAAATGATAT
2301023 CGAAATGAAAAACGAAGGAAGAAAAACTCCCAAAATTGTTATCATGACATTCTAACCACCACCGT
1 CGAAATGAAAAACGAAGGAAGAAAAACTCCCAAAATTGTTATCATGACATTCTAACCACCACCGT
2301088 GCTTGCTCTAACCACCAGCCTCTCTTGAGGGCCTGGTCGTCGCTCCAATGAATCCCGGCTATGGA
66 GCTTGCTCTAACCACCAGCCTCTCTTGAGGGCCTGGTCGTCGCTCCAATGAATCCCGGCTATGGA
2301153 GGCCACCAAGGATGATCAAGTGGGGGACGATGTAAAAA
131 GGCCACCAAGGATGATCAAGTGGGGGACGATGTAAAAA
2301191 CGAAATGAAAAACGAAGGAAGAAAAACTCCCAAAATTGTTATCATGACATTCTAACCACCACCGT
1 CGAAATGAAAAACGAAGGAAGAAAAACTCCCAAAATTGTTATCATGACATTCTAACCACCACCGT
2301256 GCTTGCTCTAACCACCAGCCTCTCTTGAGGGCCTGGTCGTCGCTCCAATGAATCCCGGCTATGGA
66 GCTTGCTCTAACCACCAGCCTCTCTTGAGGGCCTGGTCGTCGCTCCAATGAATCCCGGCTATGGA
2301321 GGCCACCAAGGATGATCAAGTGGGGGACGATGTAAAAA
131 GGCCACCAAGGATGATCAAGTGGGGGACGATGTAAAAA
2301359 TTAAGTGATG
Statistics
Matches: 168, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
168 168 1.00
ACGTcount: A:0.32, C:0.26, G:0.23, T:0.20
Consensus pattern (168 bp):
CGAAATGAAAAACGAAGGAAGAAAAACTCCCAAAATTGTTATCATGACATTCTAACCACCACCGT
GCTTGCTCTAACCACCAGCCTCTCTTGAGGGCCTGGTCGTCGCTCCAATGAATCCCGGCTATGGA
GGCCACCAAGGATGATCAAGTGGGGGACGATGTAAAAA
Found at i:2312456 original size:34 final size:34
Alignment explanation
Indices: 2312416--2312506 Score: 173
Period size: 34 Copynumber: 2.7 Consensus size: 34
2312406 CTAGTTTTTT
*
2312416 CGGGCTAAACTAGAACCTTTCCCTAGCTTTTACA
1 CGGGCTAAGCTAGAACCTTTCCCTAGCTTTTACA
2312450 CGGGCTAAGCTAGAACCTTTCCCTAGCTTTTACA
1 CGGGCTAAGCTAGAACCTTTCCCTAGCTTTTACA
2312484 CGGGCTAAGCTAGAACCTTTCCC
1 CGGGCTAAGCTAGAACCTTTCCC
2312507 CTTTACAAAA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 56 1.00
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (34 bp):
CGGGCTAAGCTAGAACCTTTCCCTAGCTTTTACA
Found at i:2312815 original size:21 final size:21
Alignment explanation
Indices: 2312789--2312830 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
2312779 CCAGAATGGG
*
2312789 GGGAATCGGTACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
2312810 GGGAATCGATACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
2312831 ATATTCAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (21 bp):
GGGAATCGATACCCCTTCATA
Found at i:2312946 original size:19 final size:19
Alignment explanation
Indices: 2312924--2312969 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
2312914 ACAGTGATTC
*
2312924 ACTGTTCAAATAGTAATTT
1 ACTGTTCAAATAGTAAATT
2312943 ACTGTTCAAATAGTAAATT
1 ACTGTTCAAATAGTAAATT
*
2312962 ACTATTCA
1 ACTGTTCA
2312970 TAAAAACATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (19 bp):
ACTGTTCAAATAGTAAATT
Found at i:2313081 original size:30 final size:31
Alignment explanation
Indices: 2313034--2313124 Score: 168
Period size: 31 Copynumber: 3.0 Consensus size: 31
2313024 AAATTTTGAA
2313034 TAAATTCAATT-AAGTCCAAAAA-CATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
2313063 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
2313094 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
2313125 CCTTAAATTG
Statistics
Matches: 60, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
29 11 0.18
30 11 0.18
31 38 0.63
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.33
Consensus pattern (31 bp):
TAAATTCAATTCAAGTCCAAAAACCATTTTG
Found at i:2313315 original size:22 final size:22
Alignment explanation
Indices: 2313284--2313330 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
2313274 AAGCTCCCCC
2313284 TTTTTCATTAAGAAATTGAATT
1 TTTTTCATTAAGAAATTGAATT
*
2313306 TTTTTTATTAAGAAATTGAATT
1 TTTTTCATTAAGAAATTGAATT
2313328 TTT
1 TTT
2313331 CAAACTAAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.34, C:0.02, G:0.09, T:0.55
Consensus pattern (22 bp):
TTTTTCATTAAGAAATTGAATT
Found at i:2321800 original size:2 final size:2
Alignment explanation
Indices: 2321793--2321847 Score: 101
Period size: 2 Copynumber: 27.0 Consensus size: 2
2321783 TACAACAATA
2321793 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2321835 AT AT AT GAT AT AT
1 AT AT AT -AT AT AT
2321848 TAGCATGTTA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 50 0.96
3 2 0.04
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:2322248 original size:30 final size:30
Alignment explanation
Indices: 2322214--2322288 Score: 143
Period size: 30 Copynumber: 2.5 Consensus size: 30
2322204 AAAACAGTGA
2322214 CTAAATCAAAAGAAAAAAGAAACAAGATAC
1 CTAAATCAAAAGAAAAAAGAAACAAGATAC
2322244 CTAAATCAAAAGAAAAAAGAAACAAGATAC
1 CTAAATCAAAAGAAAAAAGAAACAAGATAC
2322274 CTAAATC-AAAGAAAA
1 CTAAATCAAAAGAAAA
2322289 CATGAAAACT
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
29 8 0.18
30 37 0.82
ACGTcount: A:0.67, C:0.13, G:0.09, T:0.11
Consensus pattern (30 bp):
CTAAATCAAAAGAAAAAAGAAACAAGATAC
Found at i:2325644 original size:3 final size:3
Alignment explanation
Indices: 2325636--2325693 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
2325626 AACTTTGCAC
2325636 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
2325684 TAT TAT TAT T
1 TAT TAT TAT T
2325694 CCATTTTAGC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:2327931 original size:7 final size:7
Alignment explanation
Indices: 2327921--2327949 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
2327911 TAAAATTTTG
2327921 AATTAAA
1 AATTAAA
2327928 AATTAAA
1 AATTAAA
2327935 AATTAAA
1 AATTAAA
2327942 AATTAAA
1 AATTAAA
2327949 A
1 A
2327950 TTTTAGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (7 bp):
AATTAAA
Found at i:2328813 original size:15 final size:16
Alignment explanation
Indices: 2328777--2328815 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
2328767 AGAGCCTCTG
*
2328777 AATCATTCAGCATTTA
1 AATCATTCAGCACTTA
*
2328793 AATCATTCAGCGCTT-
1 AATCATTCAGCACTTA
2328808 AATCATTC
1 AATCATTC
2328816 TGAAGTAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.33, C:0.23, G:0.08, T:0.36
Consensus pattern (16 bp):
AATCATTCAGCACTTA
Found at i:2334886 original size:77 final size:78
Alignment explanation
Indices: 2334799--2334951 Score: 188
Period size: 77 Copynumber: 2.0 Consensus size: 78
2334789 TGAATTAATA
* **
2334799 AAAATCTTATTTAATTAATT-CAAATTAAATAT-ACATT-AAAGACTTATAATCTGAATTACA-A
1 AAAATATTATTTAATT-ATTCCAAATTAAATATCA-ATTAAAAGACTTATAATCAAAATTACATA
2334860 TCTTTAATGTTTATTT
64 T-TTTAATGTTTATTT
* * *
2334876 AAAATATTATTTAATTATTCCGAATTAATTATCAATTAAAAGAGTTATAATCAAAATTACATTAT
1 AAAATATTATTTAATTATTCCAAATTAAATATCAATTAAAAGACTTATAATCAAAATTACA-TAT
2334941 TTTAATGTTTA
65 TTTAATGTTTA
2334952 CTTACTATAT
Statistics
Matches: 65, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
76 3 0.05
77 28 0.43
78 21 0.32
79 11 0.17
80 2 0.03
ACGTcount: A:0.44, C:0.08, G:0.05, T:0.44
Consensus pattern (78 bp):
AAAATATTATTTAATTATTCCAAATTAAATATCAATTAAAAGACTTATAATCAAAATTACATATT
TTAATGTTTATTT
Found at i:2340240 original size:140 final size:140
Alignment explanation
Indices: 2339988--2340270 Score: 548
Period size: 140 Copynumber: 2.0 Consensus size: 140
2339978 GCAAACGTTG
*
2339988 TATTATGTGTATTTTATGTGTAAACTTTTAACATTTTCATTTAGGCATGTATTAGTAACTTGAGT
1 TATTATGTGTATTTTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGT
2340053 TTGAACATTGCTATGATCTGTTCAGTTATTATCACTTATTACACATTCATTTGAATATCGCAACG
66 TTGAACATTGCTATGATCTGTTCAGTTATTATCACTTATTACACATTCATTTGAATATCGCAACG
2340118 CGAATTTGAC
131 CGAATTTGAC
2340128 TATTATGTGTATTTTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGT
1 TATTATGTGTATTTTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGT
*
2340193 TTGAACATTGCTATGATCTGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACG
66 TTGAACATTGCTATGATCTGTTCAGTTATTATCACTTATTACACATTCATTTGAATATCGCAACG
2340258 CGAATTTGAC
131 CGAATTTGAC
2340268 TAT
1 TAT
2340271 CGCAACGCGA
Statistics
Matches: 141, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
140 141 1.00
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.43
Consensus pattern (140 bp):
TATTATGTGTATTTTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGT
TTGAACATTGCTATGATCTGTTCAGTTATTATCACTTATTACACATTCATTTGAATATCGCAACG
CGAATTTGAC
Found at i:2340266 original size:20 final size:20
Alignment explanation
Indices: 2340241--2340377 Score: 220
Period size: 20 Copynumber: 6.8 Consensus size: 20
2340231 TTACACATTC
*
2340241 ATTTGAATATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
2340261 ATTTGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
2340281 ATTTGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
2340301 ATTTGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* *
2340321 ATTTGACTATCACAACGTGA
1 ATTTGACTATCGCAACGCGA
* * *
2340341 ATTTGATTATCGCAATGGGA
1 ATTTGACTATCGCAACGCGA
2340361 ATTTGACTATCGCAACG
1 ATTTGACTATCGCAACG
2340378 AGAAAATCGC
Statistics
Matches: 108, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 108 1.00
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (20 bp):
ATTTGACTATCGCAACGCGA
Found at i:2340557 original size:14 final size:14
Alignment explanation
Indices: 2340538--2340574 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
2340528 CATCAATTAA
2340538 ACAAATCAACTTTT
1 ACAAATCAACTTTT
2340552 ACAAATCAACTTTT
1 ACAAATCAACTTTT
2340566 ACAAATCAA
1 ACAAATCAA
2340575 TTAAACAAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:2340613 original size:81 final size:79
Alignment explanation
Indices: 2340471--2340642 Score: 215
Period size: 81 Copynumber: 2.1 Consensus size: 79
2340461 ATTGAAATCA
*
2340471 ACAAATCAACTTTTACATTTCAATCAATTAAACAAGCACAAATAAGAATTATTTACACATCAATT
1 ACAAATCAACTTTTACA--T-AATCAATTAAACAAGCAAAAATAAGAATTATTTACACATCAATT
2340536 AAACAAATCA-ACTTTT
63 AAACAAATCAGACTTTT
* * *
2340552 ACAAATCAACTTTTACA-AATCAATTAAACAAGCAAAAATAATAATTCTTATTTTCCTCATCAAT
1 ACAAATCAACTTTTACATAATCAATTAAACAAGCAAAAATAAGAA---TTA-TTTACACATCAAT
2340616 TAAACAAATCAGACTTTT
62 TAAACAAATCAGACTTTT
2340634 A-AGAATCAA
1 ACA-AATCAA
2340643 TTAAACAATC
Statistics
Matches: 81, Mismatches: 4, Indels: 11
0.84 0.04 0.11
Matches are distributed among these distances:
77 25 0.31
80 3 0.04
81 40 0.49
82 13 0.16
ACGTcount: A:0.48, C:0.18, G:0.03, T:0.31
Consensus pattern (79 bp):
ACAAATCAACTTTTACATAATCAATTAAACAAGCAAAAATAAGAATTATTTACACATCAATTAAA
CAAATCAGACTTTT
Found at i:2342011 original size:42 final size:42
Alignment explanation
Indices: 2341964--2342044 Score: 110
Period size: 42 Copynumber: 1.9 Consensus size: 42
2341954 CTTGAATGGT
2341964 GGGA-GGGACCTCTTCAACGATGACAGGGGCCTCTTGAACTGC
1 GGGAGGGGA-CTCTTCAACGATGACAGGGGCCTCTTGAACTGC
* ** *
2342006 GGGAGGGGACTCTTGAGGGATGATAGGGGCCTCTTGAAC
1 GGGAGGGGACTCTTCAACGATGACAGGGGCCTCTTGAAC
2342045 GATAGGAGAG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 30 0.88
43 4 0.12
ACGTcount: A:0.21, C:0.21, G:0.38, T:0.20
Consensus pattern (42 bp):
GGGAGGGGACTCTTCAACGATGACAGGGGCCTCTTGAACTGC
Found at i:2342061 original size:42 final size:42
Alignment explanation
Indices: 2341982--2342063 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
2341972 CCTCTTCAAC
* *
2341982 GATGACAGGGGCCTCTTGAACTGCGGGAGGGGACTCTTGAGG
1 GATGACAGGGGCCTCTTGAACTGCAGGAGAGGACTCTTGAGG
* * *
2342024 GATGATAGGGGCCTCTTGAAC-GATAGGAGAGGCCTCTTGA
1 GATGACAGGGGCCTCTTGAACTG-CAGGAGAGGACTCTTGA
2342064 ACGATAACAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
41 1 0.03
42 33 0.97
ACGTcount: A:0.22, C:0.18, G:0.39, T:0.21
Consensus pattern (42 bp):
GATGACAGGGGCCTCTTGAACTGCAGGAGAGGACTCTTGAGG
Found at i:2342575 original size:20 final size:20
Alignment explanation
Indices: 2342550--2342593 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
2342540 AATAGTTTCT
2342550 GAAACTTAAAATCGCAACAC
1 GAAACTTAAAATCGCAACAC
*
2342570 GAAACTTAAAATCGCAACGC
1 GAAACTTAAAATCGCAACAC
2342590 GAAA
1 GAAA
2342594 ATGATTATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.50, C:0.23, G:0.14, T:0.14
Consensus pattern (20 bp):
GAAACTTAAAATCGCAACAC
Found at i:2342603 original size:20 final size:20
Alignment explanation
Indices: 2342580--2342662 Score: 130
Period size: 20 Copynumber: 4.2 Consensus size: 20
2342570 GAAACTTAAA
*
2342580 ATCGCAACGCGAAAATGATT
1 ATCGCAACGCGAAAATGACT
*
2342600 ATCGCAACGCGGAAATGACT
1 ATCGCAACGCGAAAATGACT
2342620 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
**
2342640 ATCGCAACGCGAATTTGACT
1 ATCGCAACGCGAAAATGACT
2342660 ATC
1 ATC
2342663 ATAACAAGAT
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 58 1.00
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.19
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:2342718 original size:32 final size:33
Alignment explanation
Indices: 2342673--2342738 Score: 89
Period size: 32 Copynumber: 2.0 Consensus size: 33
2342663 ATAACAAGAT
* *
2342673 AATCGCAATGCGAAATAAAAAT-GCAACGAGAA
1 AATCGCAACGCGAAACAAAAATCGCAACGAGAA
* *
2342705 AATCGCAACGCGAAACCAAAATCGCAACGCGAA
1 AATCGCAACGCGAAACAAAAATCGCAACGAGAA
2342738 A
1 A
2342739 CTAAATTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
32 19 0.66
33 10 0.34
ACGTcount: A:0.50, C:0.23, G:0.18, T:0.09
Consensus pattern (33 bp):
AATCGCAACGCGAAACAAAAATCGCAACGAGAA
Found at i:2342748 original size:19 final size:19
Alignment explanation
Indices: 2342703--2342739 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
2342693 ATGCAACGAG
2342703 AAAATCGCAACGCGAAACC
1 AAAATCGCAACGCGAAACC
2342722 AAAATCGCAACGCGAAAC
1 AAAATCGCAACGCGAAAC
2342740 TAAATTCGCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.49, C:0.30, G:0.16, T:0.05
Consensus pattern (19 bp):
AAAATCGCAACGCGAAACC
Found at i:2342773 original size:20 final size:20
Alignment explanation
Indices: 2342744--2342781 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
2342734 CGAAACTAAA
*
2342744 TTCGCGTTGCGATTTTCATT
1 TTCGCATTGCGATTTTCATT
2342764 TTCGCATTGCGATTTTCA
1 TTCGCATTGCGATTTTCA
2342782 CGTTGTGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.13, C:0.21, G:0.18, T:0.47
Consensus pattern (20 bp):
TTCGCATTGCGATTTTCATT
Found at i:2342805 original size:33 final size:34
Alignment explanation
Indices: 2342748--2342843 Score: 104
Period size: 33 Copynumber: 2.9 Consensus size: 34
2342738 ACTAAATTCG
*
2342748 CGTTGCGATTTTCATTTTCGCATTGCGATTTTCA
1 CGTTGCGATTTTCATTTTCGCATTGCGATTATCA
* * *
2342782 CGTTGTGATTTTTA-TTTCGCATTGCGATTATCC
1 CGTTGCGATTTTCATTTTCGCATTGCGATTATCA
* ** * *
2342815 CGTTGCAATAGTCATTTCCGCGTTGCGAT
1 CGTTGCGATTTTCATTTTCGCATTGCGAT
2342844 AGTCATTTTC
Statistics
Matches: 50, Mismatches: 11, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
33 26 0.52
34 24 0.48
ACGTcount: A:0.16, C:0.21, G:0.20, T:0.44
Consensus pattern (34 bp):
CGTTGCGATTTTCATTTTCGCATTGCGATTATCA
Found at i:2342861 original size:20 final size:20
Alignment explanation
Indices: 2342815--2342863 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
2342805 GCGATTATCC
*
2342815 CGTTGCAATAGTCATTTCCG
1 CGTTGCGATAGTCATTTCCG
*
2342835 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTCCG
2342855 CGTTGCGAT
1 CGTTGCGAT
2342864 TTTAAGTTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.16, C:0.22, G:0.24, T:0.37
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTCCG
Found at i:2344797 original size:20 final size:20
Alignment explanation
Indices: 2344774--2344863 Score: 83
Period size: 20 Copynumber: 4.5 Consensus size: 20
2344764 TATGAAACTT
2344774 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
*
2344794 AAAATTGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
** * **
2344814 ACTATCGCAACGCGAATTTG
1 AAAATCGCAACACGAAAATG
** *
2344834 ACTATCGCAACGCG-AAATG
1 AAAATCGCAACACGAAAATG
*
2344853 AAAATAGCAAC
1 AAAATCGCAAC
2344864 GAGAAAATCG
Statistics
Matches: 58, Mismatches: 12, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
19 11 0.19
20 47 0.81
ACGTcount: A:0.47, C:0.21, G:0.17, T:0.16
Consensus pattern (20 bp):
AAAATCGCAACACGAAAATG
Found at i:2345453 original size:20 final size:20
Alignment explanation
Indices: 2345428--2345494 Score: 64
Period size: 20 Copynumber: 3.3 Consensus size: 20
2345418 TTTGAAAATT
2345428 GCGTTGTGATAGTCAGAATC
1 GCGTTGTGATAGTCAGAATC
* * **
2345448 GCGTTGCGATTTTGT-ATTATC
1 GCGTTGTGA--TAGTCAGAATC
*
2345469 GTGTTGTGATAGTCAGAATC
1 GCGTTGTGATAGTCAGAATC
2345489 GCGTTG
1 GCGTTG
2345495 CGATTATGTA
Statistics
Matches: 34, Mismatches: 10, Indels: 6
0.68 0.20 0.12
Matches are distributed among these distances:
19 3 0.09
20 17 0.50
21 11 0.32
22 3 0.09
ACGTcount: A:0.19, C:0.13, G:0.30, T:0.37
Consensus pattern (20 bp):
GCGTTGTGATAGTCAGAATC
Found at i:2345474 original size:21 final size:21
Alignment explanation
Indices: 2345445--2345521 Score: 77
Period size: 21 Copynumber: 3.7 Consensus size: 21
2345435 GATAGTCAGA
2345445 ATCGCGTTGCGATTTTGTATT
1 ATCGCGTTGCGATTTTGTATT
* * * **
2345466 ATCGTGTTGTGA--TAGTCAGA
1 ATCGCGTTGCGATTTTGT-ATT
*
2345486 ATCGCGTTGCGATTATGTATT
1 ATCGCGTTGCGATTTTGTATT
2345507 ATCGCGTTGCGATTT
1 ATCGCGTTGCGATTT
2345522 ACATATTCAC
Statistics
Matches: 41, Mismatches: 12, Indels: 6
0.69 0.20 0.10
Matches are distributed among these distances:
19 3 0.07
20 11 0.27
21 25 0.61
22 2 0.05
ACGTcount: A:0.18, C:0.14, G:0.26, T:0.42
Consensus pattern (21 bp):
ATCGCGTTGCGATTTTGTATT
Found at i:2345487 original size:41 final size:41
Alignment explanation
Indices: 2345428--2345515 Score: 158
Period size: 41 Copynumber: 2.1 Consensus size: 41
2345418 TTTGAAAATT
*
2345428 GCGTTGTGATAGTCAGAATCGCGTTGCGATTTTGTATTATC
1 GCGTTGTGATAGTCAGAATCGCGTTGCGATTATGTATTATC
*
2345469 GTGTTGTGATAGTCAGAATCGCGTTGCGATTATGTATTATC
1 GCGTTGTGATAGTCAGAATCGCGTTGCGATTATGTATTATC
2345510 GCGTTG
1 GCGTTG
2345516 CGATTTACAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.19, C:0.14, G:0.28, T:0.39
Consensus pattern (41 bp):
GCGTTGTGATAGTCAGAATCGCGTTGCGATTATGTATTATC
Found at i:2345541 original size:20 final size:20
Alignment explanation
Indices: 2345513--2345561 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
2345503 TATTATCGCG
2345513 TTGCGATTTACATATTCACA
1 TTGCGATTTACATATTCACA
* *
2345533 TTGCAATTTACATATTCGCA
1 TTGCGATTTACATATTCACA
2345553 TTGCGATTT
1 TTGCGATTT
2345562 TCTAAAATCG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.27, C:0.18, G:0.12, T:0.43
Consensus pattern (20 bp):
TTGCGATTTACATATTCACA
Found at i:2350333 original size:55 final size:56
Alignment explanation
Indices: 2350258--2350382 Score: 191
Period size: 55 Copynumber: 2.2 Consensus size: 56
2350248 TTGCGATAAA
*
2350258 TTGCATACTTTTCTTTATCCTTTTTAG-AAAATAAACTTTTTGACTAA-TAAATTTC
1 TTGCATACTTTTCTTTATCC-TTTTAGAAAAATAAACTTTTTGACTAACAAAATTTC
*
2350313 TTGCATACTTTTCTTTATCCTTTTAGAAAAAAATAACCTTTTTGACTAACAAAATTTC
1 TTGCATACTTTTCTTTATCCTTTTAG--AAAAATAAACTTTTTGACTAACAAAATTTC
2350371 TTGCATACTTTT
1 TTGCATACTTTT
2350383 AATCGATTAC
Statistics
Matches: 64, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
54 6 0.09
55 20 0.31
57 19 0.30
58 19 0.30
ACGTcount: A:0.31, C:0.16, G:0.06, T:0.47
Consensus pattern (56 bp):
TTGCATACTTTTCTTTATCCTTTTAGAAAAATAAACTTTTTGACTAACAAAATTTC
Found at i:2352222 original size:28 final size:29
Alignment explanation
Indices: 2352190--2352252 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
2352180 GATTTTTTGC
2352190 GATTTT-TAGAAATTT-AGGAGTTTTTTTA
1 GATTTTCT-GAAATTTAAGGAGTTTTTTTA
* *
2352218 GATTTTCTGGAATTTAAGGTGTTTTTTTA
1 GATTTTCTGAAATTTAAGGAGTTTTTTTA
*
2352247 AATTTT
1 GATTTT
2352253 AATAATTTCA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
28 12 0.40
29 18 0.60
ACGTcount: A:0.25, C:0.02, G:0.17, T:0.56
Consensus pattern (29 bp):
GATTTTCTGAAATTTAAGGAGTTTTTTTA
Found at i:2353808 original size:28 final size:29
Alignment explanation
Indices: 2353776--2353831 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
2353766 GATTTTTTGC
2353776 GATTTT-TAGAAATTT-AGGAGTTTTTTTA
1 GATTTTCT-GAAATTTAAGGAGTTTTTTTA
* *
2353804 GATTTTCTGGAATTTAAGGTGTTTTTTT
1 GATTTTCTGAAATTTAAGGAGTTTTTTT
2353832 TAAATTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 12 0.50
29 12 0.50
ACGTcount: A:0.23, C:0.02, G:0.20, T:0.55
Consensus pattern (29 bp):
GATTTTCTGAAATTTAAGGAGTTTTTTTA
Found at i:2354643 original size:60 final size:60
Alignment explanation
Indices: 2354576--2354722 Score: 181
Period size: 60 Copynumber: 2.5 Consensus size: 60
2354566 AACATAATGA
* * * *
2354576 ATAGTCAGGTGATCATTTTGTAACTTTTAATAGTCGAGTAACTCAACAAAGCAACTCCAT
1 ATAGTCAGGGGACCATTTTGTAACTTTTAATAGTCAAGGAACTCAACAAAGCAACTCCAT
* * * *
2354636 ATAGTCAGGGGACCATTTTGTAACTTTTAATAGTTAAGGGACTCAACAAAGCAATATGC-T
1 ATAGTCAGGGGACCATTTTGTAACTTTTAATAGTCAAGGAACTCAACAAAGCAA-CTCCAT
*
2354696 ATAGTCAGAGGACCATTTGTGT-ACTTT
1 ATAGTCAGGGGACCATTT-TGTAACTTT
2354723 ACCCTTAATT
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
60 71 0.93
61 5 0.07
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.32
Consensus pattern (60 bp):
ATAGTCAGGGGACCATTTTGTAACTTTTAATAGTCAAGGAACTCAACAAAGCAACTCCAT
Found at i:2357990 original size:60 final size:59
Alignment explanation
Indices: 2357926--2358072 Score: 172
Period size: 60 Copynumber: 2.4 Consensus size: 59
2357916 AATTAAGGGT
* * *
2357926 AAAG-TACACAAATGGTCCTCTGACTATA-GCATATTGCTTTGTTGAGTCCCTTAACTATTA
1 AAAGTTACA-AAATGATCC-CTGACTATATGCA-ATTGCTTTGTTGAGTCACTCAACTATTA
* * * *
2357986 AAAGTTACAAAATGATCCCCTGACTATATGGAGTTGCTTTGTTGAGTTACTCGACTATTA
1 AAAGTTACAAAATGAT-CCCTGACTATATGCAATTGCTTTGTTGAGTCACTCAACTATTA
2358046 AAAGTTACAAAATGATCACCTGACTAT
1 AAAGTTACAAAATGATC-CCTGACTAT
2358073 TCATTATGTT
Statistics
Matches: 76, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
59 1 0.01
60 67 0.88
61 8 0.11
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (59 bp):
AAAGTTACAAAATGATCCCTGACTATATGCAATTGCTTTGTTGAGTCACTCAACTATTA
Found at i:2358401 original size:59 final size:59
Alignment explanation
Indices: 2358271--2358392 Score: 158
Period size: 59 Copynumber: 2.1 Consensus size: 59
2358261 TCGAGTGAAT
* * * *
2358271 ATTTTGTAACTTTTAATAGTCGAGGGACTCAACAAAACAACTCTCTATAGCCGGGGATC
1 ATTTTGTAACTTTTAATAGTCGAGAGACTCAACAAAACAACTCTCTATAGCAGGAGACC
* *
2358330 ATTTTGTAACTTTTAATAGTCG-GAGACTCAACAAAACAA-TGTCCTATAATCAGGAGACC
1 ATTTTGTAACTTTTAATAGTCGAGAGACTCAACAAAACAACTCT-CTAT-AGCAGGAGACC
2358389 ATTT
1 ATTT
2358393 GTTTACTTTA
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
57 2 0.04
58 20 0.36
59 33 0.60
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30
Consensus pattern (59 bp):
ATTTTGTAACTTTTAATAGTCGAGAGACTCAACAAAACAACTCTCTATAGCAGGAGACC
Found at i:2360453 original size:29 final size:30
Alignment explanation
Indices: 2360408--2360465 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
2360398 TTAAAATTTA
2360408 AAAAAAAACACCTTAAATTCCAAAAAATCT
1 AAAAAAAACACCTTAAATTCCAAAAAATCT
* * *
2360438 AAAAAAAACTCC-TAAATTTCTAAAAATC
1 AAAAAAAACACCTTAAATTCCAAAAAATC
2360466 GCAAAAAATC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.59, C:0.19, G:0.00, T:0.22
Consensus pattern (30 bp):
AAAAAAAACACCTTAAATTCCAAAAAATCT
Found at i:2360471 original size:29 final size:30
Alignment explanation
Indices: 2360408--2360473 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 30
2360398 TTAAAATTTA
*
2360408 AAAAAAAACACCTTAAATTCCAAAAAATCT
1 AAAAAAAACACCTTAAATTCCAAAAAATCG
* * *
2360438 AAAAAAAACTCC-TAAATTTCTAAAAATCG
1 AAAAAAAACACCTTAAATTCCAAAAAATCG
*
2360467 CAAAAAA
1 AAAAAAA
2360474 TCAAAAATTC
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
29 20 0.65
30 11 0.35
ACGTcount: A:0.61, C:0.18, G:0.02, T:0.20
Consensus pattern (30 bp):
AAAAAAAACACCTTAAATTCCAAAAAATCG
Found at i:2360472 original size:30 final size:30
Alignment explanation
Indices: 2360408--2360473 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
2360398 TTAAAATTTA
*
2360408 AAAAAAAACACCTTAAATTCCAAAAAATCT
1 AAAAAAAACACCTTAAATTCCAAAAAATCC
* * *
2360438 AAAAAAAACTCC-TAAATTTCTAAAAATCGC
1 AAAAAAAACACCTTAAATTCCAAAAAATC-C
2360468 AAAAAA
1 AAAAAA
2360474 TCAAAAATTC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 14 0.45
30 17 0.55
ACGTcount: A:0.61, C:0.18, G:0.02, T:0.20
Consensus pattern (30 bp):
AAAAAAAACACCTTAAATTCCAAAAAATCC
Done.