Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008717.1 Hibiscus syriacus cultivar Beakdansim tig00111772_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3453450
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 16
Found at i:578642 original size:22 final size:22
Alignment explanation
Indices: 578572--578642 Score: 72
Period size: 22 Copynumber: 3.2 Consensus size: 22
578562 AAAAATAGGT
*
578572 TTATGGAAAAAGGAGCAATGAG
1 TTATGGAAAAAGAAGCAATGAG
* * *
578594 TTTATGGAAGAAGAAGAAAAT-AT
1 -TTATGGAAAAAGAAG-CAATGAG
*
578617 TTATGGAATAAGAAGCAATGAG
1 TTATGGAAAAAGAAGCAATGAG
578639 TTAT
1 TTAT
578643 TAATTACATA
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
21 3 0.08
22 19 0.49
23 14 0.36
24 3 0.08
ACGTcount: A:0.46, C:0.03, G:0.25, T:0.25
Consensus pattern (22 bp):
TTATGGAAAAAGAAGCAATGAG
Found at i:578935 original size:4 final size:4
Alignment explanation
Indices: 578926--588715 Score: 11084
Period size: 4 Copynumber: 2441.8 Consensus size: 4
578916 GAAATTGTAT
578926 ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
578973 ATAC ATAC ATAC ATAC ATAC -TAC TACAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC ATAC ATAC
579021 ATAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
579068 ATAC ATAC ATAC --AC ATAC CTAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
579114 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
579162 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-CC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
579209 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
579255 ATAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
579302 ATAC ATAC ATAC ATCAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC AT-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
579351 ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC --AC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
579396 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
579444 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
579492 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * ** * * * * * * **
579540 ATAC GTCAGC TATATT TTTC AT-C ACGC CT-G TTAAC GGCTA- TTAAC GTTG
1 ATAC AT-A-C -ATA-C ATAC ATAC ATAC ATAC AT-AC --ATAC AT-AC ATAC
** * * * * ** * * **
579589 AGTGACC AATTT GTAAC AAAC GATAAC GTTA- GTGAC TGATTT GTGAC TTTTG
1 A-T-A-C -ATAC AT-AC ATAC -AT-AC -ATAC AT-AC --ATAC AT-AC -ATAC
* ** * * * * * * *
579641 AAAC AT-C AGTGGT AAAA AAAC TTAC -T-C AAAC ATTA- GTAACC ATTTGC
1 ATAC ATAC A-T-AC ATAC ATAC ATAC ATAC ATAC A-TAC AT-A-C A--TAC
* * * * * **
579688 ATA- ATTTACC CTA- A-AT ATAT ATAC AT-G ATAAGC ACTAC ATGAAA ATTGT
1 ATAC A--TA-C ATAC ATAC ATAC ATAC ATAC AT-A-C A-TAC AT--AC A-TAC
579737 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
579785 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC CTAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
579832 ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
579878 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * ** * *
579926 ATAC ATAC ATAC -TAC ATAC GTCAGC TATATT TTTC AT-C ACGC CT-G
1 ATAC ATAC ATAC ATAC ATAC AT-A-C -ATA-C ATAC ATAC ATAC ATAC
* * * * ** ** * * *
579971 TTAAC GGCTA- TTAAC GTTG AGTGACC AATTT GTAAC AAAC GATAAC GTTA-
1 AT-AC --ATAC AT-AC ATAC A-T-A-C -ATAC AT-AC ATAC -AT-AC -ATAC
* ** * * ** * ** * * * * *
580021 GTGAC TGATTT GTGAC TTTTG AAAC AT-C AGTGGT AAAA ATAA AAAC TTAC
1 AT-AC --ATAC AT-AC -ATAC ATAC ATAC A-T-AC ATAC ATAC ATAC ATAC
* * * * * * * *
580071 -T-C AAAC ATTA- GTAACC ATTTGC ATA- ATTTACC CTAT AAAT ATAT ATAC
1 ATAC ATAC A-TAC AT-A-C A--TAC ATAC A--TA-C ATAC ATAC ATAC ATAC
* * * *
580119 AT-G ATAGC ACTAC ATGAA AT-T GTAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATA-C A-TAC AT-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
580168 ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
580214 --AC ATAC ATAC ATAC ATAC AT-C ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * ** * * *
580259 ATAC ATAC ATAC ATAC GTCAGC TATAT TTTC GT-C ACGC CT-G TTAAC
1 ATAC ATAC ATAC ATAC AT-A-C -ATAC ATAC ATAC ATAC ATAC AT-AC
* * * ** ** * * * *
580305 GGCTA- TTAAC GTTG AGTGACC AATTT GTAAC AAAC GATAAC GTTA- GTGAC
1 --ATAC AT-AC ATAC A-T-A-C -ATAC AT-AC ATAC -AT-AC -ATAC AT-AC
** * * ** * ** * * * * *
580355 TGATTT GTGAC TTTTG AAAC AT-C AGTGGT AAAA ATAA AAAC TTAC -T-C
1 --ATAC AT-AC -ATAC ATAC ATAC A-T-AC ATAC ATAC ATAC ATAC ATAC
* * * ** ** * * *
580402 AAAC ATTA- GTAACC ATTTGC ATA- ATTT ACCC TATAA ATAT ATAT ATAC
1 ATAC A-TAC AT-A-C A--TAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC
* * **
580450 AT-G ATAAGC ACTAC ATGAAA ATTGT ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC AT-A-C A-TAC AT--AC A-TAC ATAC ATAC ATAC ATAC ATAC ATAC
580499 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
580547 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-C ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
580594 ATAC ATAC ATAC ATAC ATAC ATAC AT-C ATAC ACTAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-TAC ATAC ATAC ATAC
580642 -TAC ATAC ATAC A-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
580688 AT-C ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
580733 ATAC ATAC AT-C ATAC ATCC ATAC ATAC ATAC -TAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
580779 ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC TACAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -ATAC
580826 ATAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
580873 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-C ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
580920 -TAC ATAC ATAC A-AC ATAC ATAC --AC ATAC ATAC ATAC AT-C ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
580963 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
581011 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
581059 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
581107 ATAC ATCC ATAC ATAC --AC ATAC ATAC ATAC AACAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC
581154 -TAC ATAC ATAC ATAC ATAC ATAC ATAC AT-- ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
581199 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
581247 ATAC ATAC ATAC ATAC ATAC ATAC ATACC ATAC ATAC --AC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATA-C ATAC ATAC ATAC ATAC ATAC
581294 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
581342 ATAC ATAC ATAC ATAC ATAC ATAC ACAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
581390 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
581438 --AC ATAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC --AC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
581481 ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
581528 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
581576 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC CTAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
581624 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
581672 ATAC ATAC ATAC ATAC ATAC ATAC AT-C ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
581719 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
581767 A-AC ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
581813 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
581861 ATAC ATAC ATAC A-AC ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
581907 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-TAC
*
581956 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ACAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
582004 ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
582050 ATAC AT-- ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
582096 A-AC -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATACC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA-C ATAC ATAC ATAC
582143 ATAC ATAC ATAC ATAC AT-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * ** * * * * *
582190 ATAC ATAC GTCC TATATT TTTC GT-C ACGC CT-G TTAAC GGCTA- TTAAC
1 ATAC ATAC ATAC -ATA-C ATAC ATAC ATAC ATAC AT-AC --ATAC AT-AC
* ** ** * * * * ** *
582237 GTTG AGTGACC AATTT GTAAC AAAC GATAAC GTTA- GTGAC TGATTT GTGAC
1 ATAC A-T-A-C -ATAC AT-AC ATAC -AT-AC -ATAC AT-AC --ATAC AT-AC
* ** * ** * * * * * *
582288 TTTTG AAAC AT-C AGTGGT AAAA ATAA AAAC TTAC -T-C AAAC ATTA-
1 -ATAC ATAC ATAC A-T-AC ATAC ATAC ATAC ATAC ATAC ATAC A-TAC
* * ** ** * * * *
582332 GTAACC ATTTGC ATA- ATTT ACCC TATAA ATAT ATAT ATAC AT-G ATAAGC
1 AT-A-C A--TAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC ATAC AT-A-C
* **
582381 ACTAC ATGAAA ATTGT ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 A-TAC AT--AC A-TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
582429 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
582476 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
582523 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ACAT ACAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
582571 ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-AC ATAC ATAC AT-C ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
582617 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC CTAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
582665 --AC ATA- ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
582708 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
582756 ATAC ATAC CTAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA-
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
582803 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
582849 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
582896 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC CTAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
582944 ATAC AGAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
582991 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
583039 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
583087 ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC AT--
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
583131 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
583179 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
583227 ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
583274 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-C ATAC AT-C ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
583320 --AC ATAC A-AC ATAC ATAC ATAC A-AC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
583364 ATAC ATAC ATAC -TAC ATAC ATAC ATA- ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
583410 ATAC ATAC ATAC ATAC A-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
583457 ATAC AATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC -ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
583506 ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
583551 A-AC ATAC --AC ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC AGAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
583595 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
583643 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
583691 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
583739 ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
583786 ATAC ATAC -TAC ATAC ATAC ATAC ATAC AT-C ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
583832 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-AC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
583879 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
583927 ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * **
583973 ATAC ATAC ATAC ATAC ATAC ATAC GTCAGC TATATT TTTC AT-C ACGC
1 ATAC ATAC ATAC ATAC ATAC ATAC AT-A-C -ATA-C ATAC ATAC ATAC
* * * * * * ** ** * *
584020 CT-G TTAAC GGCTA- TTAAC GTTG AGTGACC AATTT GTAAC AAAC GATAAC
1 ATAC AT-AC --ATAC AT-AC ATAC A-T-A-C -ATAC AT-AC ATAC -AT-AC
* * ** * * ** * ** * * * *
584069 GTTA- GTGAC TGATTT GTGAC TTTTG AAAC AT-C AGTGGT AAAA ATAA AAAC
1 -ATAC AT-AC --ATAC AT-AC -ATAC ATAC ATAC A-T-AC ATAC ATAC ATAC
* * * * ** ** * *
584119 TTAC -T-C AAAC ATTA- GTAACC ATTTGC ATA- ATTT ACCC TATAA ATAT
1 ATAC ATAC ATAC A-TAC AT-A-C A--TAC ATAC ATAC ATAC -ATAC ATAC
* * * **
584165 ATAT ATAC AT-G ATAAGC ACTAC ATGAAA ATTGT ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC AT-A-C A-TAC AT--AC A-TAC ATAC ATAC ATAC ATAC
584214 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
584262 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * ** * * *
584310 ATAC ATAC ATAC ATAC GTCAGC TATATT TTTC GT-C ACGC CT-G TTAAC
1 ATAC ATAC ATAC ATAC AT-A-C -ATA-C ATAC ATAC ATAC ATAC AT-AC
* * * ** ** * * * *
584357 GGCTA- TTAAC GTTG AGTGACC AATTT GTAAC AAAC GATAAC GTTA- GTGAC
1 --ATAC AT-AC ATAC A-T-A-C -ATAC AT-AC ATAC -AT-AC -ATAC AT-AC
** * * ** * ** * * * * *
584407 TGATTT GTGAC TTTTG AAAC AT-C AGTGGT AAAA ATAA AAAC TTAC -T-C
1 --ATAC AT-AC -ATAC ATAC ATAC A-T-AC ATAC ATAC ATAC ATAC ATAC
* * * ** ** * * *
584454 AAAC ATTA- GTAACC ATTTGC ATA- ATTT ACCC TATAA ATAT ATAT ATAC
1 ATAC A-TAC AT-A-C A--TAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC
* * **
584502 AT-G ATAAGC ACTAC ATGAAA ATTGT ATAC ATAC ATAC ATAC ATAC --AC
1 ATAC AT-A-C A-TAC AT--AC A-TAC ATAC ATAC ATAC ATAC ATAC ATAC
584549 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
584597 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
584645 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
584693 ATAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATCC ATACC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA-C ATAC
584741 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
584789 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
584837 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC GTCAGC TATATT TTTC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-A-C -ATA-C ATAC
** * * * * * * ** ** *
584885 AT-C ACGC CT-G TTAAC GGCTA- TTAAC GTTG AGTGACC AATTT GTAAC
1 ATAC ATAC ATAC AT-AC --ATAC AT-AC ATAC A-T-A-C -ATAC AT-AC
* * * ** * * ** * **
584931 AAAC GATAAC GTTA- GTGAC TGATTT GTGAC TTTTG AAAC AT-C AGTGGT
1 ATAC -AT-AC -ATAC AT-AC --ATAC AT-AC -ATAC ATAC ATAC A-T-AC
* * * * * * * * **
584979 AAAA ATAA AAAC TTAC -T-C AAAC ATTA- GTAACC ATTTGC ATA- ATTT
1 ATAC ATAC ATAC ATAC ATAC ATAC A-TAC AT-A-C A--TAC ATAC ATAC
** * * * * * **
585024 ACCC TATAA ATAT ATAT ATAC AT-G ATAAGC ACTAC ATGAAA ATTGT ATAC
1 ATAC -ATAC ATAC ATAC ATAC ATAC AT-A-C A-TAC AT--AC A-TAC ATAC
585074 ATAC ATAC ATAC --AC ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
585119 ATAC ATAC ATAC AGAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
585166 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ACAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * ** * * * * * * **
585214 GTCAGC TATATT TTTC GT-C ACGC CT-G TTAAC GGCTA- TTAAC GTTG AGTGACC
1 AT-A-C -ATA-C ATAC ATAC ATAC ATAC AT-AC --ATAC AT-AC ATAC A-T-A-C
** * * * * ** * * ** *
585266 AATTT GTAAC AAAC GATAAC GTTA- GTGAC TGATTT GTGAC TTTTG AAAC
1 -ATAC AT-AC ATAC -AT-AC -ATAC AT-AC --ATAC AT-AC -ATAC ATAC
** * * * * * * * *
585315 AT-C AGTGGT AAAA ATAA AAAC TTAC -T-C AAAC ATTA- GTAACC ATTTGC
1 ATAC A-T-AC ATAC ATAC ATAC ATAC ATAC ATAC A-TAC AT-A-C A--TAC
** ** * * * * * **
585362 ATA- ATTT ACCC TATAA ATAT ATAT AT-T ATAAGC ACTAC ATGAAA ATTGT
1 ATAC ATAC ATAC -ATAC ATAC ATAC ATAC AT-A-C A-TAC AT--AC A-TAC
585411 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
585459 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
585507 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
585554 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
585602 ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-C ATAC ATAC AT-- ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
585647 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-AC ATAC ATAC ATAC ATAC
585696 ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
585742 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC CTAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
585790 ATAC ATAC ATAC ATAC ATAC ATTAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC A-TAC ATAC ATAC ATAC ATAC ATAC ATAC
585839 ATAC -TAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
585884 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
585930 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
585978 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
586024 ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATATC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA-C ATAC
*
586071 ATAC AT-C ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC AGAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
586116 ATAC ATAC ATAC ATAC ATAC ATACC ATAC -TAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATA-C ATAC ATAC ATAC ATAC ATAC ATAC
586164 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-- ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
586210 ATAC ATAC --AC ATAC ATAC A-AC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
586255 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
586303 ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
586349 --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
586395 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
586443 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
586490 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
586536 ATAC ATACC ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATA-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
586584 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATACC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA-C ATAC
*
586633 ATAC ATAC ATAC ATAC ATAC ATAC ATAC CTAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
586681 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
586729 --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
586775 ATAC ATACC ATAC ATAC ATAC ATAC ATAC ATAC ATCC ATAC ATAC ATAC
1 ATAC ATA-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
586824 ATAC ATAC ATAC ATAC ATAC AT-- ATAC ATAC -TAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
586869 ATAC ATAC TACAC AGAC A-AC ATAC ATAC ATAC ATAC ATAC A-AC ATA-
1 ATAC ATAC -ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
586915 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
586963 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
587009 ATAC ATAC ATAC ATAC A-AC ATAC ATAC ATAC ATAC ATAC -CAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
587055 ATAC ATAC ATAC ATAC ATAC ATAC ATAC AATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC ATAC
587104 ATAC ATAC ATAC ATAC AT-- ATAC ATAC ATAC ATAC ATAC --AC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
587148 ATAC ATAC --AC ATAC ATAC ATAC ATAC A-AC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
587193 ATTAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AGAC
1 A-TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
587242 ATAC ATAC ATAC AGAC ATAC ATAC ATAC ATAC ATAC AT-C ATAC ACAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
587289 ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ACTAC AT-- ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-TAC ATAC ATAC ATAC
587334 ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-C ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
587381 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATCC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
587429 ATAC ATAC ATAC ATAC -TAC A-AC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
587475 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT--
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
587521 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
587569 ATAC ATAC ATAC ATAC CTAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
587617 -TAC AT-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
587663 ATAC AT-- ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
587709 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC CTAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
587757 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATCC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
587803 ATAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC -TAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
587849 ATAC ATAC ATAC AT-- ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
587895 ATAC AACAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC -ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
587944 ATAC ATAC ATAC ATAC ATAC ACAC ATAC ATAC ATAC ATAC ATAC --AC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
587990 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
588038 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-C ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
588085 ATAC ATAC ATAC ATAC ATAC ATAC AT-- ATAC ATAC ATAC ATAC CTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
588131 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
588179 ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
588225 ATAC ATAC ATAC ATAC ATAC ATAC AACAC ATAC ATAC ATAC AT-C ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC ATAC ATAC
588273 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
588321 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
588369 ATAC AGAC ATAC ATAC ATAAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC AT-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
588418 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
588466 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
588514 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-- ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
588560 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
588608 ATAC ATAC -CAC ATAC ATAC ATA- ATAC ATAC A-AC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
588653 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AAAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
588701 ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATA
588716 GAGAAGACAA
Statistics
Matches: 8530, Mismatches: 689, Indels: 1134
0.82 0.07 0.11
Matches are distributed among these distances:
2 115 0.01
3 366 0.04
4 7687 0.90
5 185 0.02
6 116 0.01
7 45 0.01
8 16 0.00
ACGTcount: A:0.47, C:0.24, G:0.02, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:590080 original size:3 final size:3
Alignment explanation
Indices: 590072--590101 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
590062 ACTCTATTTC
590072 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
590102 TTAAGGTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:595046 original size:153 final size:155
Alignment explanation
Indices: 594883--595168 Score: 486
Period size: 154 Copynumber: 1.9 Consensus size: 155
594873 TTTAGTAATA
594883 TTATCTAAACTTCTAGTTGGATTGAATTTTAATATCCTATTTCTTTTTACGTTA-TTTTTTATAT
1 TTATCTAAACTTCTAGTTGGATTGAATTTTAATATCCTATTTCTTTTTACGTTATTTTTTTATAT
* * *
594947 ATTTAGGCACTAAATATATAGTTTATCCTAATAATTAAGAATAACAACGGACAATCATCT-TTTT
66 ATTTAGGCACTAAATATATAGTTTACCCTAATAATTAAGAAAAACAAAGGACAATCATCTGTTTT
595011 TTTGAAGAAAAATATTATAATACTT
131 TTTGAAGAAAAATATTATAATACTT
* *
595036 TTATCTAAACTTCTAGTTTGATTGAATTTTAATCTCCTATTTCTTTTTACGTTATTTTTTTATAT
1 TTATCTAAACTTCTAGTTGGATTGAATTTTAATATCCTATTTCTTTTTACGTTATTTTTTTATAT
* * *
595101 ATTTAGGTACTAAATATATAGTTTACCCTAATAATTAAGAAAAACAAAGGATAATCATTTGTTTT
66 ATTTAGGCACTAAATATATAGTTTACCCTAATAATTAAGAAAAACAAAGGACAATCATCTGTTTT
595166 TTT
131 TTT
595169 CGATATATAT
Statistics
Matches: 123, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
153 52 0.42
154 64 0.52
155 7 0.06
ACGTcount: A:0.34, C:0.11, G:0.08, T:0.47
Consensus pattern (155 bp):
TTATCTAAACTTCTAGTTGGATTGAATTTTAATATCCTATTTCTTTTTACGTTATTTTTTTATAT
ATTTAGGCACTAAATATATAGTTTACCCTAATAATTAAGAAAAACAAAGGACAATCATCTGTTTT
TTTGAAGAAAAATATTATAATACTT
Found at i:595557 original size:19 final size:20
Alignment explanation
Indices: 595532--595577 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
595522 GACCAACAAA
* *
595532 ATCGCAATGTGATCGCCATT
1 ATCGCAACGCGATCGCCATT
*
595552 -TCGCAACGCGATCTCCATT
1 ATCGCAACGCGATCGCCATT
595571 ATCGCAA
1 ATCGCAA
595578 ATCAGTTTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.26
Consensus pattern (20 bp):
ATCGCAACGCGATCGCCATT
Found at i:595654 original size:21 final size:21
Alignment explanation
Indices: 595617--595656 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
595607 GACTATCGCA
**
595617 TGCGATTTTCCGGATTCGCGT
1 TGCGATTTTCCCAATTCGCGT
595638 TGCGATTTTCCCAATTCGC
1 TGCGATTTTCCCAATTCGC
595657 AATGCGAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.12, C:0.28, G:0.23, T:0.38
Consensus pattern (21 bp):
TGCGATTTTCCCAATTCGCGT
Found at i:595662 original size:21 final size:20
Alignment explanation
Indices: 595612--595663 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
595602 ATTCTGACTA
**
595612 TCGCATGCGATTTTCCGGAT
1 TCGCATGCGATTTTCCCAAT
*
595632 TCGCGTTGCGATTTTCCCAAT
1 TCGC-ATGCGATTTTCCCAAT
595653 TCGCAATGCGA
1 TCGC-ATGCGA
595664 ATACGTAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 4 0.15
21 22 0.85
ACGTcount: A:0.17, C:0.27, G:0.23, T:0.33
Consensus pattern (20 bp):
TCGCATGCGATTTTCCCAAT
Found at i:595696 original size:21 final size:22
Alignment explanation
Indices: 595653--595705 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
595643 TTTTCCCAAT
*
595653 TCGCAATGCG--AATACGTAAA
1 TCGCAATGCGATAATACGAAAA
595673 TCGCAATGCGATAATAC-AAAA
1 TCGCAATGCGATAATACGAAAA
*
595694 TCGCAACGCGAT
1 TCGCAATGCGAT
595706 TATGACTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 10 0.34
21 14 0.48
22 5 0.17
ACGTcount: A:0.40, C:0.23, G:0.19, T:0.19
Consensus pattern (22 bp):
TCGCAATGCGATAATACGAAAA
Found at i:595719 original size:20 final size:20
Alignment explanation
Indices: 595694--595939 Score: 368
Period size: 20 Copynumber: 12.3 Consensus size: 20
595684 TAATACAAAA
*
595694 TCGCAACGCGATTATGACTT
1 TCGCAACGCGATTCTGACTT
**
595714 TCGCAACGCGATGATGACTT
1 TCGCAACGCGATTCTGACTT
*
595734 TCGCAACGCGATTCTGACTA
1 TCGCAACGCGATTCTGACTT
595754 TCGCAACGCGATTCTGACTT
1 TCGCAACGCGATTCTGACTT
595774 TCGCAACGCGATTCTGACTT
1 TCGCAACGCGATTCTGACTT
595794 TCGCAACGCGATTCTGACTT
1 TCGCAACGCGATTCTGACTT
* *
595814 TCGCAACGCGATTCTAACTA
1 TCGCAACGCGATTCTGACTT
* *
595834 TCGCAACCCGATACTGACTT
1 TCGCAACGCGATTCTGACTT
*
595854 TCGCAACGCGATACTGACTT
1 TCGCAACGCGATTCTGACTT
*
595874 TCGCAACGCGATGCTGACTT
1 TCGCAACGCGATTCTGACTT
*
595894 TCGCAACGCGATTCTGACTA
1 TCGCAACGCGATTCTGACTT
* *
595914 TCGCAACGCGATTATGAATT
1 TCGCAACGCGATTCTGACTT
595934 T-GCAAC
1 TCGCAAC
595940 AGGTTTTGGT
Statistics
Matches: 208, Mismatches: 18, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
19 5 0.02
20 203 0.98
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (20 bp):
TCGCAACGCGATTCTGACTT
Found at i:596638 original size:23 final size:23
Alignment explanation
Indices: 596612--596656 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
596602 TATTCAAAAT
596612 TTGATCTTGGTCAATACCCGGAC
1 TTGATCTTGGTCAATACCCGGAC
*
596635 TTGATCTTGGTCAATACTCGGA
1 TTGATCTTGGTCAATACCCGGA
596657 TTTTGATGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (23 bp):
TTGATCTTGGTCAATACCCGGAC
Found at i:596879 original size:14 final size:14
Alignment explanation
Indices: 596853--596889 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
596843 AGAAAAAGAA
596853 GAAGAAGAAGTCCCC
1 GAAGAA-AAGTCCCC
596868 GAAGAAAAGTCCCC
1 GAAGAAAAGTCCCC
596882 GAAGAAAA
1 GAAGAAAA
596890 TGCCACGAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 16 0.73
15 6 0.27
ACGTcount: A:0.49, C:0.22, G:0.24, T:0.05
Consensus pattern (14 bp):
GAAGAAAAGTCCCC
Found at i:599155 original size:20 final size:20
Alignment explanation
Indices: 599130--599256 Score: 218
Period size: 20 Copynumber: 6.3 Consensus size: 20
599120 CAACGAGGAA
*
599130 ATCGCAACGCGGATATGACT
1 ATCGCAACGCGGAAATGACT
599150 ATCGCAACGCGGAAATGACT
1 ATCGCAACGCGGAAATGACT
599170 ATCGCAACGCGGAAATGACT
1 ATCGCAACGCGGAAATGACT
* *
599190 ATCGTAACACGGAAATGACT
1 ATCGCAACGCGGAAATGACT
*
599210 ATCGCAACGCGGAACTGACT
1 ATCGCAACGCGGAAATGACT
599230 ATCGCAACGCGGAAATGACT
1 ATCGCAACGCGGAAATGACT
599250 ATCGCAA
1 ATCGCAA
599257 TGAGAGAATC
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 100 1.00
ACGTcount: A:0.35, C:0.25, G:0.24, T:0.17
Consensus pattern (20 bp):
ATCGCAACGCGGAAATGACT
Found at i:600984 original size:21 final size:21
Alignment explanation
Indices: 600960--601029 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 21
600950 TGACAGTGGC
*
600960 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGTAGGGGA
* * *
600981 CTCTTG-AGGGATGATAGGGGC
1 CTCTTGAACGG-TGGTAGGGGA
* *
601002 CTCTTGAACGATTGTAGGGGA
1 CTCTTGAACGGTGGTAGGGGA
601023 CTCTTGA
1 CTCTTGA
601030 GGGATGACAG
Statistics
Matches: 38, Mismatches: 9, Indels: 4
0.75 0.18 0.08
Matches are distributed among these distances:
20 3 0.08
21 33 0.87
22 2 0.05
ACGTcount: A:0.20, C:0.16, G:0.39, T:0.26
Consensus pattern (21 bp):
CTCTTGAACGGTGGTAGGGGA
Found at i:600994 original size:42 final size:42
Alignment explanation
Indices: 600948--601040 Score: 141
Period size: 42 Copynumber: 2.2 Consensus size: 42
600938 CCTCTTCAAC
* *
600948 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTTGAGG
1 GATGACAGGGGCCTCTTGAACGATGGGAGGGGACTCTTGAGG
* * *
600990 GATGATAGGGGCCTCTTGAACGATTGTAGGGGACTCTTGAGG
1 GATGACAGGGGCCTCTTGAACGATGGGAGGGGACTCTTGAGG
601032 GATGACAGG
1 GATGACAGG
601041 TGAGTCGGGC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.22, C:0.15, G:0.41, T:0.23
Consensus pattern (42 bp):
GATGACAGGGGCCTCTTGAACGATGGGAGGGGACTCTTGAGG
Found at i:601418 original size:20 final size:21
Alignment explanation
Indices: 601393--601459 Score: 77
Period size: 20 Copynumber: 3.3 Consensus size: 21
601383 GAAACTTAAA
601393 ATCGCAACGCCAAAAA-GACT
1 ATCGCAACGCCAAAAATGACT
*
601413 ATCGCAACG-CAAAAATGGCT
1 ATCGCAACGCCAAAAATGACT
* **
601433 ATCGCAACG-CGAATTTGACT
1 ATCGCAACGCCAAAAATGACT
601453 ATCGCAA
1 ATCGCAA
601460 TGAGAGAATC
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
19 6 0.15
20 35 0.85
ACGTcount: A:0.39, C:0.27, G:0.18, T:0.16
Consensus pattern (21 bp):
ATCGCAACGCCAAAAATGACT
Found at i:601490 original size:19 final size:19
Alignment explanation
Indices: 601466--601519 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 19
601456 GCAATGAGAG
* **
601466 AATCGCAATGCGAAATGAA
1 AATCGCAACGCGAAACCAA
*
601485 AATCGCAACGCGAAACCCA
1 AATCGCAACGCGAAACCAA
601504 AATCGCAACGCGAAAC
1 AATCGCAACGCGAAAC
601520 TAATTTCGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.44, C:0.28, G:0.19, T:0.09
Consensus pattern (19 bp):
AATCGCAACGCGAAACCAA
Found at i:601558 original size:14 final size:15
Alignment explanation
Indices: 601541--601574 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
601531 TACGATTTTC
601541 ATTTTCGT-GTTGCG
1 ATTTTCGTCGTTGCG
601555 ATTTT-GTCGTTGCG
1 ATTTTCGTCGTTGCG
601569 ATTTTC
1 ATTTTC
601575 ATTTCGCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 2 0.11
14 16 0.89
ACGTcount: A:0.09, C:0.15, G:0.24, T:0.53
Consensus pattern (15 bp):
ATTTTCGTCGTTGCG
Found at i:601587 original size:33 final size:33
Alignment explanation
Indices: 601533--601623 Score: 110
Period size: 33 Copynumber: 2.7 Consensus size: 33
601523 TTTCGCATTA
* * *
601533 CGATTTTCATTTTCGTGTTGCGATTTTGTCGTTG
1 CGATTTTCA-TTTCGCGTTGCGATTCTCTCGTTG
*
601567 CGATTTTCATTTCGCATTGCGATTCTCTCGTTG
1 CGATTTTCATTTCGCGTTGCGATTCTCTCGTTG
**
601600 CGATAGTCATTTCCGCGTTGCGAT
1 CGATTTTCATTT-CGCGTTGCGAT
601624 AGCCATTTTC
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
33 30 0.61
34 19 0.39
ACGTcount: A:0.12, C:0.21, G:0.22, T:0.45
Consensus pattern (33 bp):
CGATTTTCATTTCGCGTTGCGATTCTCTCGTTG
Found at i:601620 original size:20 final size:20
Alignment explanation
Indices: 601595--601663 Score: 111
Period size: 20 Copynumber: 3.5 Consensus size: 20
601585 GCGATTCTCT
*
601595 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTTTCG
* *
601615 CGTTGCGATAGCCATTTTCA
1 CGTTGCGATAGTCATTTTCG
601635 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
601655 CGTTGCGAT
1 CGTTGCGAT
601664 TTTAAGTTTC
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.16, C:0.23, G:0.25, T:0.36
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTTCG
Found at i:601823 original size:22 final size:22
Alignment explanation
Indices: 601798--601877 Score: 115
Period size: 22 Copynumber: 3.6 Consensus size: 22
601788 TAGACCAAAA
601798 CTAATCAGCATTCAAACGATTT
1 CTAATCAGCATTCAAACGATTT
*
601820 CTAATCAACATTCAAACGATTT
1 CTAATCAGCATTCAAACGATTT
* * *
601842 CTAATCAGCATTCAGACAAATT
1 CTAATCAGCATTCAAACGATTT
*
601864 CCAATCAGCATTCA
1 CTAATCAGCATTCA
601878 GACCAAGTCC
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 52 1.00
ACGTcount: A:0.39, C:0.25, G:0.07, T:0.29
Consensus pattern (22 bp):
CTAATCAGCATTCAAACGATTT
Found at i:601878 original size:22 final size:22
Alignment explanation
Indices: 601800--601935 Score: 103
Period size: 22 Copynumber: 6.2 Consensus size: 22
601790 GACCAAAACT
* * * *
601800 AATCAGCATTCAAACGATTTCT
1 AATCAGCATTCAGACCAATTCC
* * * * *
601822 AATCAACATTCAAACGATTTCT
1 AATCAGCATTCAGACCAATTCC
*
601844 AATCAGCATTCAGACAAATTCC
1 AATCAGCATTCAGACCAATTCC
*
601866 AATCAGCATTCAGACCAAGTCC
1 AATCAGCATTCAGACCAATTCC
* * * * *
601888 ATTCAACACTCAGACCAAGTCT
1 AATCAGCATTCAGACCAATTCC
* *
601910 AGTCAGCATTCATACCAA-TCC
1 AATCAGCATTCAGACCAATTCC
601931 AATCA
1 AATCA
601936 ATAGTAAAGC
Statistics
Matches: 96, Mismatches: 18, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
21 6 0.06
22 90 0.94
ACGTcount: A:0.38, C:0.28, G:0.09, T:0.25
Consensus pattern (22 bp):
AATCAGCATTCAGACCAATTCC
Found at i:602439 original size:18 final size:18
Alignment explanation
Indices: 602416--602464 Score: 98
Period size: 18 Copynumber: 2.7 Consensus size: 18
602406 CGGGTCGATC
602416 AGGTGATGGCTCTGGGTG
1 AGGTGATGGCTCTGGGTG
602434 AGGTGATGGCTCTGGGTG
1 AGGTGATGGCTCTGGGTG
602452 AGGTGATGGCTCT
1 AGGTGATGGCTCT
602465 CGAAGTGGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.12, C:0.12, G:0.47, T:0.29
Consensus pattern (18 bp):
AGGTGATGGCTCTGGGTG
Found at i:603819 original size:20 final size:20
Alignment explanation
Indices: 603796--603867 Score: 110
Period size: 20 Copynumber: 3.6 Consensus size: 20
603786 GAAACTTAAA
603796 ATCGCAACGAGAAAATGACT
1 ATCGCAACGAGAAAATGACT
603816 ATCGCAAC-ACGAAAATGACT
1 ATCGCAACGA-GAAAATGACT
* *
603836 ATCGCAACGCGGAAATGACT
1 ATCGCAACGAGAAAATGACT
603856 ATCGCAACGAGA
1 ATCGCAACGAGA
603868 GAATCGCAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
19 1 0.02
20 45 0.98
ACGTcount: A:0.42, C:0.24, G:0.21, T:0.14
Consensus pattern (20 bp):
ATCGCAACGAGAAAATGACT
Found at i:603892 original size:18 final size:18
Alignment explanation
Indices: 603869--603921 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
603859 GCAACGAGAG
603869 AATCGCAATGCGAATTGA
1 AATCGCAATGCGAATTGA
*
603887 AATCGCAATGCGAATTTGG
1 AATCGCAATGCGAA-TTGA
**
603906 TTTCGCAATGCGAATT
1 AATCGCAATGCGAATT
603922 TGGTTTCGCA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
18 16 0.52
19 15 0.48
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (18 bp):
AATCGCAATGCGAATTGA
Found at i:603913 original size:19 final size:19
Alignment explanation
Indices: 603871--603949 Score: 106
Period size: 19 Copynumber: 4.2 Consensus size: 19
603861 AACGAGAGAA
***
603871 TCGCAATGCGAA-TTGAAA
1 TCGCAATGCGAATTTGGTT
603889 TCGCAATGCGAATTTGGTT
1 TCGCAATGCGAATTTGGTT
603908 TCGCAATGCGAATTTGGTT
1 TCGCAATGCGAATTTGGTT
* *
603927 TCGCATTGCGATTTTGGTT
1 TCGCAATGCGAATTTGGTT
603946 TCGC
1 TCGC
603950 GTTGCGATTT
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
18 12 0.22
19 43 0.78
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.35
Consensus pattern (19 bp):
TCGCAATGCGAATTTGGTT
Found at i:603959 original size:19 final size:19
Alignment explanation
Indices: 603889--603956 Score: 100
Period size: 19 Copynumber: 3.6 Consensus size: 19
603879 CGAATTGAAA
*
603889 TCGCAATGCGAATTTGGTT
1 TCGCATTGCGAATTTGGTT
*
603908 TCGCAATGCGAATTTGGTT
1 TCGCATTGCGAATTTGGTT
*
603927 TCGCATTGCGATTTTGGTT
1 TCGCATTGCGAATTTGGTT
*
603946 TCGCGTTGCGA
1 TCGCATTGCGA
603957 TTTCAATTCA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 46 1.00
ACGTcount: A:0.16, C:0.18, G:0.28, T:0.38
Consensus pattern (19 bp):
TCGCATTGCGAATTTGGTT
Found at i:604006 original size:20 final size:20
Alignment explanation
Indices: 603981--604049 Score: 95
Period size: 20 Copynumber: 3.5 Consensus size: 20
603971 GCGATTCTCT
*
603981 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCAATTTCG
*
604001 CGTTGCGATATTC-ATTTCCG
1 CGTTGCGATAGTCAATTT-CG
*
604021 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCAATTTCG
604041 CGTTGCGAT
1 CGTTGCGAT
604050 TTTATGTTTC
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
19 3 0.07
20 37 0.86
21 3 0.07
ACGTcount: A:0.17, C:0.22, G:0.25, T:0.36
Consensus pattern (20 bp):
CGTTGCGATAGTCAATTTCG
Found at i:604424 original size:22 final size:22
Alignment explanation
Indices: 604394--604450 Score: 78
Period size: 22 Copynumber: 2.6 Consensus size: 22
604384 GATGGAGATA
604394 GACGGATTTCGCCAGAGATGGG
1 GACGGATTTCGCCAGAGATGGG
* * *
604416 GACGAATTTCGTCGGAGATGGG
1 GACGGATTTCGCCAGAGATGGG
*
604438 GACGGATGTCGCC
1 GACGGATTTCGCC
604451 GTAGAGAGTG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.21, C:0.19, G:0.40, T:0.19
Consensus pattern (22 bp):
GACGGATTTCGCCAGAGATGGG
Found at i:604668 original size:20 final size:20
Alignment explanation
Indices: 604643--604684 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
604633 TATTATCACG
*
604643 TTGCGAAAGTCAGCATCGCA
1 TTGCGAAAGTCAACATCGCA
604663 TTGCGAAAGTCAACATCGCA
1 TTGCGAAAGTCAACATCGCA
604683 TT
1 TT
604685 ACGATTTTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (20 bp):
TTGCGAAAGTCAACATCGCA
Found at i:604771 original size:21 final size:22
Alignment explanation
Indices: 604719--604771 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
604709 ATTTACTTAT
604719 TCGCATTGCG-AATTGGGAAAA
1 TCGCATTGCGAAATTGGGAAAA
**
604740 TCGCAACGCGAAATT-GGAAAA
1 TCGCATTGCGAAATTGGGAAAA
604761 TCGCATTGCGA
1 TCGCATTGCGA
604772 TAGTCAGCAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (22 bp):
TCGCATTGCGAAATTGGGAAAA
Found at i:611096 original size:5 final size:5
Alignment explanation
Indices: 611086--611130 Score: 56
Period size: 5 Copynumber: 8.8 Consensus size: 5
611076 AACGGTCAAC
*
611086 GGTCG GGTCG GGTCAAC GGTCG GGTCG GGTC- GGTCG GGTCG GGTC
1 GGTCG GGTCG GGTC--G GGTCG GGTCG GGTCG GGTCG GGTCG GGTC
611131 AGACCGGTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
4 4 0.11
5 27 0.77
7 4 0.11
ACGTcount: A:0.04, C:0.22, G:0.53, T:0.20
Consensus pattern (5 bp):
GGTCG
Found at i:611099 original size:17 final size:17
Alignment explanation
Indices: 611079--611131 Score: 85
Period size: 17 Copynumber: 3.3 Consensus size: 17
611069 GGAGGTCAAC
611079 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
611096 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
611113 GGT---CGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
611127 GGTCA
1 GGTCA
611132 GACCGGTTCT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
14 14 0.41
17 20 0.59
ACGTcount: A:0.09, C:0.23, G:0.49, T:0.19
Consensus pattern (17 bp):
GGTCAACGGTCGGGTCG
Found at i:618384 original size:31 final size:31
Alignment explanation
Indices: 618346--618499 Score: 265
Period size: 31 Copynumber: 5.0 Consensus size: 31
618336 CCCGAAGGAC
* * *
618346 CAGTCCATA-GATTCCGAAGAACCTAGGTAAT
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
618377 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
618408 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
618439 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
618470 CAGTCCATATGTCCCGAAGAACATAGGTAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAA
618500 CCTTCGACCC
Statistics
Matches: 119, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
31 118 0.99
32 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.20
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:622061 original size:4 final size:4
Alignment explanation
Indices: 622052--622082 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
622042 AGTACAGACA
622052 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
622083 GAATGAAACG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:622480 original size:29 final size:29
Alignment explanation
Indices: 622447--622564 Score: 218
Period size: 29 Copynumber: 4.1 Consensus size: 29
622437 TCTACAGTGG
*
622447 CCTTGGAGGTCGCCATGGCATCCGGGAGA
1 CCTTGGAGGTCGCCATGGCATCCGGGCGA
622476 CCTTGGAGGTCGCCATGGCATCCGGGCGA
1 CCTTGGAGGTCGCCATGGCATCCGGGCGA
622505 CCTTGGAGGTCGCCATGGCATCCGGGCGA
1 CCTTGGAGGTCGCCATGGCATCCGGGCGA
*
622534 CCTTGGAGGTCGCCATGGCATCCGAGCGA
1 CCTTGGAGGTCGCCATGGCATCCGGGCGA
622563 CC
1 CC
622565 GACCTGTGTG
Statistics
Matches: 87, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 87 1.00
ACGTcount: A:0.15, C:0.31, G:0.36, T:0.17
Consensus pattern (29 bp):
CCTTGGAGGTCGCCATGGCATCCGGGCGA
Found at i:622648 original size:81 final size:81
Alignment explanation
Indices: 622557--622720 Score: 328
Period size: 81 Copynumber: 2.0 Consensus size: 81
622547 CATGGCATCC
622557 GAGCGACCGACCTGTGTGTATTTTGCAAAGGAATAGGTCGCCATGCAATCAACATGGGACGTGGG
1 GAGCGACCGACCTGTGTGTATTTTGCAAAGGAATAGGTCGCCATGCAATCAACATGGGACGTGGG
622622 AATGCATGGGGGAGGG
66 AATGCATGGGGGAGGG
622638 GAGCGACCGACCTGTGTGTATTTTGCAAAGGAATAGGTCGCCATGCAATCAACATGGGACGTGGG
1 GAGCGACCGACCTGTGTGTATTTTGCAAAGGAATAGGTCGCCATGCAATCAACATGGGACGTGGG
622703 AATGCATGGGGGAGGG
66 AATGCATGGGGGAGGG
622719 GA
1 GA
622721 TGCATGCTGT
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 83 1.00
ACGTcount: A:0.26, C:0.17, G:0.37, T:0.20
Consensus pattern (81 bp):
GAGCGACCGACCTGTGTGTATTTTGCAAAGGAATAGGTCGCCATGCAATCAACATGGGACGTGGG
AATGCATGGGGGAGGG
Found at i:623265 original size:21 final size:21
Alignment explanation
Indices: 623240--623283 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
623230 AATCTAGTTA
623240 ATTAGTTTGTTAGTATAAATT
1 ATTAGTTTGTTAGTATAAATT
* *
623261 ATTAGTTTGTTAGTTTAAGTT
1 ATTAGTTTGTTAGTATAAATT
623282 AT
1 AT
623284 ATTATATTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.16, T:0.55
Consensus pattern (21 bp):
ATTAGTTTGTTAGTATAAATT
Found at i:623293 original size:28 final size:30
Alignment explanation
Indices: 623260--623322 Score: 103
Period size: 28 Copynumber: 2.2 Consensus size: 30
623250 TAGTATAAAT
*
623260 TATTAGTTTGTTAGTTTAAG-T-TATATTA
1 TATTAGTTTATTAGTTTAAGTTATATATTA
623288 TATTAGTTTATTAGTTTAAGTTATATATTA
1 TATTAGTTTATTAGTTTAAGTTATATATTA
623318 TATTA
1 TATTA
623323 TATAAAAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 19 0.59
29 1 0.03
30 12 0.38
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (30 bp):
TATTAGTTTATTAGTTTAAGTTATATATTA
Found at i:623787 original size:20 final size:21
Alignment explanation
Indices: 623743--623787 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
623733 AAATATTGTG
**
623743 TTTAAAAATATTTAGTGTTGT
1 TTTAAAAATATTTAGTGTTAA
*
623764 TTTAAAAATATTTTGT-TTAA
1 TTTAAAAATATTTAGTGTTAA
623784 TTTA
1 TTTA
623788 CATTGTATGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.56
Consensus pattern (21 bp):
TTTAAAAATATTTAGTGTTAA
Found at i:624077 original size:26 final size:25
Alignment explanation
Indices: 624048--624106 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
624038 AAATCATATT
*
624048 ATTATTAAATCATTAAATATCAAATC
1 ATTATTAAAT-AGTAAATATCAAATC
*
624074 ATTAGATT-AATAGTAATTATCAAATC
1 ATT--ATTAAATAGTAAATATCAAATC
624100 ATTATTA
1 ATTATTA
624107 GGTTTATTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
24 3 0.11
26 19 0.68
27 3 0.11
28 3 0.11
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.41
Consensus pattern (25 bp):
ATTATTAAATAGTAAATATCAAATC
Found at i:626958 original size:22 final size:19
Alignment explanation
Indices: 626926--626974 Score: 53
Period size: 22 Copynumber: 2.4 Consensus size: 19
626916 TATTTCTATG
*
626926 TATTTATTAATCATTATAAAA
1 TATTTAATAATCATT-T-AAA
*
626947 TGATTTAATAATGATTTAAA
1 T-ATTTAATAATCATTTAAA
626967 TATTTAAT
1 TATTTAAT
626975 GATTTGATGA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
19 7 0.28
20 4 0.16
21 2 0.08
22 12 0.48
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (19 bp):
TATTTAATAATCATTTAAA
Found at i:627016 original size:26 final size:26
Alignment explanation
Indices: 626987--627413 Score: 325
Period size: 26 Copynumber: 17.2 Consensus size: 26
626977 TTTGATGATT
626987 TAGTAATGATTTGATAATAATCATTA
1 TAGTAATGATTTGATAATAATCATTA
627013 TAGTAATGATTTGATAATAATCATTA
1 TAGTAATGATTTGATAATAATCATTA
*
627039 TAATAATGATTT-AGTAATAATCATTA
1 TAGTAATGATTTGA-TAATAATCATTA
** *
627065 TAAAAATGA-TT--TAATAATGATT-
1 TAGTAATGATTTGATAATAATCATTA
* * * *
627087 TA--AAT-ATTTAATGATTTGATGATT-
1 TAGTAATGATTTGAT-A-ATAATCATTA
627111 TAGTAATGATTTGATAATAATCATTA
1 TAGTAATGATTTGATAATAATCATTA
627137 TAGTAATGATTTGATAATAATCATTA
1 TAGTAATGATTTGATAATAATCATTA
*
627163 TAATAATGATTT-AGTAATAATCATTA
1 TAGTAATGATTTGA-TAATAATCATTA
** *
627189 TAAAAATGA-TT--TAATAATGATT-
1 TAGTAATGATTTGATAATAATCATTA
* * * *
627211 TA--AAT-ATTTAATGATTTGATGATT-
1 TAGTAATGATTTGAT-A-ATAATCATTA
627235 TAGTAATGATTTGATAATAATCATTA
1 TAGTAATGATTTGATAATAATCATTA
627261 TAGTAATGATTTGATAATAATCATTA
1 TAGTAATGATTTGATAATAATCATTA
*
627287 TAATAATGATTT-AGTAATAATCATTA
1 TAGTAATGATTTGA-TAATAATCATTA
** *
627313 TAAAAATGA-TT--TAATAATGATT-
1 TAGTAATGATTTGATAATAATCATTA
* * * *
627335 TA--AAT-ATTTAATGATTTGATGATT-
1 TAGTAATGATTTGAT-A-ATAATCATTA
*
627359 TAGTAATGATTTGAAAATAATCATTA
1 TAGTAATGATTTGATAATAATCATTA
* * *
627385 TAATAATGATTTTATAATAATTATT-
1 TAGTAATGATTTGATAATAATCATTA
627410 TAGT
1 TAGT
627414 TATTATTTAG
Statistics
Matches: 338, Mismatches: 33, Indels: 61
0.78 0.08 0.14
Matches are distributed among these distances:
19 3 0.01
20 15 0.04
22 9 0.03
23 33 0.10
24 27 0.08
25 30 0.09
26 204 0.60
27 17 0.05
ACGTcount: A:0.44, C:0.02, G:0.10, T:0.44
Consensus pattern (26 bp):
TAGTAATGATTTGATAATAATCATTA
Found at i:627163 original size:124 final size:124
Alignment explanation
Indices: 626933--627449 Score: 925
Period size: 124 Copynumber: 4.2 Consensus size: 124
626923 ATGTATTTAT
626933 TAATCATTAT-AAAATGATTTAATAATGATTTAAATATTTAATGATTTGATGATTTAGTAATGAT
1 TAATCATTATAAAAATGATTTAATAATGATTTAAATATTTAATGATTTGATGATTTAGTAATGAT
626997 TTGATAATAATCATTATAGTAATGATTTGATAATAATCATTATAATAATGATTTAGTAA
66 TTGATAATAATCATTATAGTAATGATTTGATAATAATCATTATAATAATGATTTAGTAA
627056 TAATCATTATAAAAATGATTTAATAATGATTTAAATATTTAATGATTTGATGATTTAGTAATGAT
1 TAATCATTATAAAAATGATTTAATAATGATTTAAATATTTAATGATTTGATGATTTAGTAATGAT
627121 TTGATAATAATCATTATAGTAATGATTTGATAATAATCATTATAATAATGATTTAGTAA
66 TTGATAATAATCATTATAGTAATGATTTGATAATAATCATTATAATAATGATTTAGTAA
627180 TAATCATTATAAAAATGATTTAATAATGATTTAAATATTTAATGATTTGATGATTTAGTAATGAT
1 TAATCATTATAAAAATGATTTAATAATGATTTAAATATTTAATGATTTGATGATTTAGTAATGAT
627245 TTGATAATAATCATTATAGTAATGATTTGATAATAATCATTATAATAATGATTTAGTAA
66 TTGATAATAATCATTATAGTAATGATTTGATAATAATCATTATAATAATGATTTAGTAA
627304 TAATCATTATAAAAATGATTTAATAATGATTTAAATATTTAATGATTTGATGATTTAGTAATGAT
1 TAATCATTATAAAAATGATTTAATAATGATTTAAATATTTAATGATTTGATGATTTAGTAATGAT
* * * * * * *
627369 TTGAAAATAATCATTATAATAATGATTTTATAATAATTATT-TAGTTATTATTTAGTAA
66 TTGATAATAATCATTATAGTAATGATTTGATAATAATCATTATAATAATGATTTAGTAA
* *
627427 TTAT--TTATAATAATGATTTAATA
1 TAATCATTATAAAAATGATTTAATA
627450 TTAATGATTT
Statistics
Matches: 384, Mismatches: 9, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
121 18 0.05
123 27 0.07
124 339 0.88
ACGTcount: A:0.43, C:0.02, G:0.10, T:0.45
Consensus pattern (124 bp):
TAATCATTATAAAAATGATTTAATAATGATTTAAATATTTAATGATTTGATGATTTAGTAATGAT
TTGATAATAATCATTATAGTAATGATTTGATAATAATCATTATAATAATGATTTAGTAA
Found at i:627197 original size:150 final size:146
Alignment explanation
Indices: 626987--627330 Score: 414
Period size: 150 Copynumber: 2.3 Consensus size: 146
626977 TTTGATGATT
* *
626987 TAGTAATGATTTGATAATAATCATTATAGTAATGATTT-GATAATAATCATTATAATAATGATTT
1 TAGTAATGATTTGATAATAATCATTATAATAATGATTTAG-TAATAATCATTATAAAAATGA-TT
* * *
627051 AGTAATAATCATTATAAAAATGATTTAAT-A-ATGATTTA-AAT-ATTTAATGATTTGATGATT-
64 --TAATAATCATT-T--AAAT-ATTTAATGATATGATTTAGAATGATTTAAT-A-ATAATCATTA
627111 TAGTAATGATTTGATAATAATCATTA
121 TAGTAATGATTTGATAATAATCATTA
627137 TAGTAATGATTTGATAATAATCATTATAATAATGATTTAGTAATAATCATTATAAAAATGATTTA
1 TAGTAATGATTTGATAATAATCATTATAATAATGATTTAGTAATAATCATTATAAAAATGATTTA
* *
627202 ATAATGATTTAAATATTTAATGATTTGATGATTTAGTAATGATTTGATAATAATCATTATAGTAA
66 ATAATCATTTAAATATTTAATGA--T-ATGATTTAG-AATGATTTAATAATAATCATTATAGTAA
627267 TGATTTGATAATAATCATTA
127 TGATTTGATAATAATCATTA
* * *
627287 TAATAATGATTT-AGTAATAATCATTATAAAAATGATTTAATAAT
1 TAGTAATGATTTGA-TAATAATCATTATAATAATGATTTAGTAAT
627331 GATTTAAATA
Statistics
Matches: 173, Mismatches: 10, Indels: 22
0.84 0.05 0.11
Matches are distributed among these distances:
143 7 0.04
144 5 0.03
146 1 0.01
147 10 0.06
148 8 0.05
149 9 0.05
150 126 0.73
151 7 0.04
ACGTcount: A:0.44, C:0.03, G:0.10, T:0.43
Consensus pattern (146 bp):
TAGTAATGATTTGATAATAATCATTATAATAATGATTTAGTAATAATCATTATAAAAATGATTTA
ATAATCATTTAAATATTTAATGATATGATTTAGAATGATTTAATAATAATCATTATAGTAATGAT
TTGATAATAATCATTA
Found at i:627456 original size:14 final size:14
Alignment explanation
Indices: 626990--627465 Score: 162
Period size: 14 Copynumber: 35.1 Consensus size: 14
626980 GATGATTTAG
*
626990 TAATGATTTGATAA
1 TAATGATTTAATAA
* *
627004 TAATCA-TT-ATAG
1 TAATGATTTAATAA
*
627016 TAATGATTTGATAA
1 TAATGATTTAATAA
*
627030 TAATCA-TT-ATAA
1 TAATGATTTAATAA
*
627042 TAATGATTTAGTAA
1 TAATGATTTAATAA
*
627056 TAATCA-TT-ATAA
1 TAATGATTTAATAA
*
627068 AAATGA-TT--TAA
1 TAATGATTTAATAA
*
627079 TAATGATTTAAATATT
1 TAATGATTT-AATA-A
*
627095 TAATGATTTGATGATTTAG
1 TAATGATTT-A--A--TAA
*
627114 TAATGATTTGATAA
1 TAATGATTTAATAA
* *
627128 TAATCA-TT-ATAG
1 TAATGATTTAATAA
*
627140 TAATGATTTGATAA
1 TAATGATTTAATAA
*
627154 TAATCA-TT-ATAA
1 TAATGATTTAATAA
*
627166 TAATGATTTAGTAA
1 TAATGATTTAATAA
*
627180 TAATCA-TT-ATAA
1 TAATGATTTAATAA
*
627192 AAATGA-TT--TAA
1 TAATGATTTAATAA
*
627203 TAATGATTTAAATATT
1 TAATGATTT-AATA-A
*
627219 TAATGATTTGATGATTTAG
1 TAATGATTT-A--A--TAA
*
627238 TAATGATTTGATAA
1 TAATGATTTAATAA
* *
627252 TAATCA-TT-ATAG
1 TAATGATTTAATAA
*
627264 TAATGATTTGATAA
1 TAATGATTTAATAA
*
627278 TAATCA-TT-ATAA
1 TAATGATTTAATAA
*
627290 TAATGATTTAGTAA
1 TAATGATTTAATAA
*
627304 TAATCA-TT-ATAA
1 TAATGATTTAATAA
*
627316 AAATGA-TT--TAA
1 TAATGATTTAATAA
*
627327 TAATGATTTAAATATT
1 TAATGATTT-AATA-A
*
627343 TAATGATTTGATGATTTAG
1 TAATGATTT-A--A--TAA
627362 TAATGATTTGAA-AA
1 TAATGATTT-AATAA
*
627376 TAATCA-TT-ATAA
1 TAATGATTTAATAA
*
627388 TAATGATTTTATAA
1 TAATGATTTAATAA
* *
627402 TAATTATTTAGT--
1 TAATGATTTAATAA
* *
627414 T-ATTATTTAGTAA
1 TAATGATTTAATAA
627427 T--T-ATTT-ATAA
1 TAATGATTTAATAA
*
627437 TAATGATTTAATAT
1 TAATGATTTAATAA
627451 TAATGATTTAATAA
1 TAATGATTTAATAA
627465 T
1 T
627466 TATTACTAAT
Statistics
Matches: 356, Mismatches: 58, Indels: 96
0.70 0.11 0.19
Matches are distributed among these distances:
10 4 0.01
11 39 0.11
12 94 0.26
13 39 0.11
14 103 0.29
15 6 0.02
16 32 0.09
17 1 0.00
18 3 0.01
19 29 0.08
20 6 0.02
ACGTcount: A:0.43, C:0.02, G:0.10, T:0.45
Consensus pattern (14 bp):
TAATGATTTAATAA
Found at i:627698 original size:17 final size:17
Alignment explanation
Indices: 627673--627705 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
627663 ACTAAATATT
*
627673 TAATTATTTGATACTAG
1 TAATGATTTGATACTAG
627690 TAATGATTTGATACTA
1 TAATGATTTGATACTA
627706 AAAATCATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.06, G:0.12, T:0.45
Consensus pattern (17 bp):
TAATGATTTGATACTAG
Found at i:627698 original size:25 final size:23
Alignment explanation
Indices: 627619--627698 Score: 67
Period size: 24 Copynumber: 3.3 Consensus size: 23
627609 GATTTATTGT
627619 TAATATTTAATTATTTGATAC--
1 TAATATTTAATTATTTGATACTA
* *
627640 TAATGATTTAAAATAGTTGATTTACTA
1 TAAT-ATTT-AATTATTTGA--TACTA
627667 -AATATTTAATTATTTGATACTA
1 TAATATTTAATTATTTGATACTA
627689 GTAATGATTT
1 -TAAT-ATTT
627699 GATACTAAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
21 4 0.09
22 9 0.20
23 8 0.17
24 11 0.24
25 11 0.24
26 3 0.07
ACGTcount: A:0.39, C:0.04, G:0.09, T:0.49
Consensus pattern (23 bp):
TAATATTTAATTATTTGATACTA
Found at i:629882 original size:15 final size:14
Alignment explanation
Indices: 629859--629889 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
629849 TACAACACTA
629859 AACTTTAATATAAT
1 AACTTTAATATAAT
629873 AACTTATAATATAAT
1 AACTT-TAATATAAT
629888 AA
1 AA
629890 ACTAATAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (14 bp):
AACTTTAATATAAT
Found at i:629897 original size:16 final size:16
Alignment explanation
Indices: 629864--629910 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
629854 CACTAAACTT
*
629864 TAATATAAT-AACTTA
1 TAATATAATAAACTAA
629879 TAATATAATAAACTAA
1 TAATATAATAAACTAA
*
629895 TAA-ACTAACAAACTAA
1 TAATA-TAATAAACTAA
629911 ACTTTTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 10 0.36
16 18 0.64
ACGTcount: A:0.60, C:0.11, G:0.00, T:0.30
Consensus pattern (16 bp):
TAATATAATAAACTAA
Found at i:630031 original size:32 final size:34
Alignment explanation
Indices: 629951--630032 Score: 93
Period size: 34 Copynumber: 2.5 Consensus size: 34
629941 CTAAACCCTT
*
629951 AAAC-AACTAATAAAATATTCTTTTATATAACTA
1 AAACTAACTAATAAACTATTCTTTTATATAACTA
629984 AAACTAACTAATAAACTATT-TTTTCATTATAA-T-
1 AAACTAACTAATAAACTATTCTTTT-A-TATAACTA
*
630017 ATACT-ACTAATAAACT
1 AAACTAACTAATAAACT
630033 TACTAACTAA
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
32 11 0.25
33 12 0.27
34 16 0.36
35 5 0.11
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (34 bp):
AAACTAACTAATAAACTATTCTTTTATATAACTA
Found at i:630150 original size:46 final size:48
Alignment explanation
Indices: 630073--630164 Score: 136
Period size: 46 Copynumber: 2.0 Consensus size: 48
630063 CAACAAACAA
*
630073 ATATAACTTAACTATTTAACTAACACAAACTAATTAAATAATTTTTTTT
1 ATATAACTTAACTATTTAACTAAAACAAACTAATT-AATAATTTTTTTT
*
630122 ATATAAC-TAACTA-TTAAC-AAAACAAACTAATTAATTATTTTTT
1 ATATAACTTAACTATTTAACTAAAACAAACTAATTAATAATTTTTT
630165 AACTATATAA
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
45 10 0.24
46 13 0.32
47 5 0.12
48 6 0.15
49 7 0.17
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (48 bp):
ATATAACTTAACTATTTAACTAAAACAAACTAATTAATAATTTTTTTT
Found at i:630175 original size:47 final size:48
Alignment explanation
Indices: 630073--630177 Score: 135
Period size: 47 Copynumber: 2.2 Consensus size: 48
630063 CAACAAACAA
* *
630073 ATATAACTTAACTATTTAACTAACACAAACTAATTAAATAATTTTTTTT
1 ATATAAC-TAACTATTTAACTAAAACAAACTAATTAAATAATTTTTTCT
*
630122 ATATAACTAACTA-TTAAC-AAAACAAACTAATT-AATTATTTTTTAACT
1 ATATAACTAACTATTTAACTAAAACAAACTAATTAAATAATTTTTT--CT
630169 ATATAACTA
1 ATATAACTA
630178 TCAAACATAT
Statistics
Matches: 51, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
45 10 0.20
46 13 0.25
47 15 0.29
48 6 0.12
49 7 0.14
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (48 bp):
ATATAACTAACTATTTAACTAAAACAAACTAATTAAATAATTTTTTCT
Found at i:630233 original size:41 final size:40
Alignment explanation
Indices: 630145--630233 Score: 90
Period size: 41 Copynumber: 2.2 Consensus size: 40
630135 TTAACAAAAC
* *
630145 AAACTAATTAATTATTTTTTAACTATATAACTATCAAACAT
1 AAACTAATTAAATAATTTTTAACTATATAACTAT-AAACAT
* * * *
630186 ATACTAATTAAATAATTTTTAATTTATGTATACTAT-AACTT
1 AAACTAATTAAATAATTTTTAA-CTATATA-ACTATAAACAT
630227 AAACTAA
1 AAACTAA
630234 CAATCATATA
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
41 29 0.74
42 5 0.13
43 5 0.13
ACGTcount: A:0.46, C:0.10, G:0.01, T:0.43
Consensus pattern (40 bp):
AAACTAATTAAATAATTTTTAACTATATAACTATAAACAT
Found at i:630411 original size:20 final size:20
Alignment explanation
Indices: 630359--630419 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 20
630349 ACCTTATCTC
* *
630359 CCTTTCTTC-TTCTTACTTT
1 CCTTTCTCCTTTCTTTCTTT
630378 CCTTTCTCCCTTTCTTTCTTT
1 CCTTTCT-CCTTTCTTTCTTT
630399 CCTTTCTCCTTTCTTTCTTT
1 CCTTTCTCCTTTCTTTCTTT
630419 C
1 C
630420 TCGGCTGCAA
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
19 7 0.18
20 15 0.39
21 16 0.42
ACGTcount: A:0.02, C:0.36, G:0.00, T:0.62
Consensus pattern (20 bp):
CCTTTCTCCTTTCTTTCTTT
Found at i:630454 original size:23 final size:23
Alignment explanation
Indices: 630424--630469 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
630414 TCTTTCTCGG
630424 CTGCAATCTCTTCTCCCTTTCTT
1 CTGCAATCTCTTCTCCCTTTCTT
630447 CTGCAATCTCTTCTCCCTTTCTT
1 CTGCAATCTCTTCTCCCTTTCTT
630470 TCTTTCTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.09, C:0.39, G:0.04, T:0.48
Consensus pattern (23 bp):
CTGCAATCTCTTCTCCCTTTCTT
Found at i:630701 original size:29 final size:29
Alignment explanation
Indices: 630669--630777 Score: 175
Period size: 29 Copynumber: 3.8 Consensus size: 29
630659 ATGGGAATGG
630669 CGCCGGGACTACATGGCGACCTACAAGGT
1 CGCCGGGACTACATGGCGACCTACAAGGT
*
630698 CGCCGGGATTACATGGCGACCTACAAGGT
1 CGCCGGGACTACATGGCGACCTACAAGGT
630727 CGCCGGGACTACATGGCGACCTACAAGGT
1 CGCCGGGACTACATGGCGACCTACAAGGT
* *
630756 CGCCTAGG-CTGCATGGCGACCT
1 CGCC-GGGACTACATGGCGACCT
630778 CTCTATTCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
29 73 0.97
30 2 0.03
ACGTcount: A:0.22, C:0.31, G:0.31, T:0.16
Consensus pattern (29 bp):
CGCCGGGACTACATGGCGACCTACAAGGT
Found at i:630833 original size:13 final size:13
Alignment explanation
Indices: 630815--630842 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
630805 TCGTATATGG
630815 CTCGTATGTCACC
1 CTCGTATGTCACC
630828 CTCGTATGTCACC
1 CTCGTATGTCACC
630841 CT
1 CT
630843 GCATGCTCCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.39, G:0.14, T:0.32
Consensus pattern (13 bp):
CTCGTATGTCACC
Found at i:630869 original size:55 final size:55
Alignment explanation
Indices: 630785--630896 Score: 224
Period size: 55 Copynumber: 2.0 Consensus size: 55
630775 CCTCTCTATT
630785 CCTGCATGCTCCCCATTGGCTCGTATATGGCTCGTATGTCACCCTCGTATGTCAC
1 CCTGCATGCTCCCCATTGGCTCGTATATGGCTCGTATGTCACCCTCGTATGTCAC
630840 CCTGCATGCTCCCCATTGGCTCGTATATGGCTCGTATGTCACCCTCGTATGTCAC
1 CCTGCATGCTCCCCATTGGCTCGTATATGGCTCGTATGTCACCCTCGTATGTCAC
630895 CC
1 CC
630897 CGTATGTCGC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 57 1.00
ACGTcount: A:0.14, C:0.36, G:0.20, T:0.30
Consensus pattern (55 bp):
CCTGCATGCTCCCCATTGGCTCGTATATGGCTCGTATGTCACCCTCGTATGTCAC
Found at i:630902 original size:12 final size:13
Alignment explanation
Indices: 630870--630904 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
630860 TCGTATATGG
630870 CTCGTATGTCACC
1 CTCGTATGTCACC
630883 CTCGTATGTCACC
1 CTCGTATGTCACC
630896 C-CGTATGTC
1 CTCGTATGTC
630905 GCCTGGATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 8 0.36
13 14 0.64
ACGTcount: A:0.14, C:0.37, G:0.17, T:0.31
Consensus pattern (13 bp):
CTCGTATGTCACC
Found at i:632063 original size:10 final size:10
Alignment explanation
Indices: 632044--632073 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
632034 TTTTGCGAGG
632044 TTACTATTCA
1 TTACTATTCA
*
632054 TTATTATTCA
1 TTACTATTCA
632064 TTACTATTCA
1 TTACTATTCA
632074 CATGAATAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.30, C:0.17, G:0.00, T:0.53
Consensus pattern (10 bp):
TTACTATTCA
Found at i:637669 original size:15 final size:14
Alignment explanation
Indices: 637641--637686 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
637631 GGTCTGGTTG
*
637641 ACCCGACCGAGTCA
1 ACCCGACTGAGTCA
637655 ACCCGGACTGAGTCA
1 ACCC-GACTGAGTCA
* *
637670 ACTCGTCTGAGTCA
1 ACCCGACTGAGTCA
637684 ACC
1 ACC
637687 ATTGACTTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 15 0.56
15 12 0.44
ACGTcount: A:0.26, C:0.37, G:0.22, T:0.15
Consensus pattern (14 bp):
ACCCGACTGAGTCA
Found at i:639872 original size:96 final size:96
Alignment explanation
Indices: 639708--639900 Score: 260
Period size: 96 Copynumber: 2.0 Consensus size: 96
639698 ACTGATTTAT
* * * * * *
639708 TGGTTTATGAACCATGGTTACTTGAAATATGTTCTTTGGTTACCTGTTTTCACTGGAAAATATGA
1 TGGTTTATGAAACATGGTTACCTGAAATATGTTATCTAGTTACCTATTTTCACTGGAAAATATGA
* * * *
639773 TCGTTCTTGATTTATGGATCATGTAATCTAC
66 TCGTTCCTAATTTATGGACCATGAAATCTAC
* * **
639804 TGGTTTATGAAATATGGTTACCTGAAATGTGTTATCTAGTTTTCTATTTTCACTGGAAAATATGA
1 TGGTTTATGAAACATGGTTACCTGAAATATGTTATCTAGTTACCTATTTTCACTGGAAAATATGA
639869 TCGTTCCTAATTTATGGACCATGAAATCTAC
66 TCGTTCCTAATTTATGGACCATGAAATCTAC
639900 T
1 T
639901 AGTTACTACT
Statistics
Matches: 83, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
96 83 1.00
ACGTcount: A:0.27, C:0.13, G:0.18, T:0.42
Consensus pattern (96 bp):
TGGTTTATGAAACATGGTTACCTGAAATATGTTATCTAGTTACCTATTTTCACTGGAAAATATGA
TCGTTCCTAATTTATGGACCATGAAATCTAC
Found at i:641459 original size:158 final size:153
Alignment explanation
Indices: 641138--641456 Score: 444
Period size: 158 Copynumber: 2.0 Consensus size: 153
641128 ACACAAATTT
*
641138 AAATTATTCTAACAACAATTTTTTGACTTAATGGTATTTGAAATCCTCAAACTTTTACAAAAAAT
1 AAATTATTCTAACAACAATTTTTTGACTTAATGGTATATGAAATCCTCAAACTTTTACAAAAAAT
*
641203 CATTGGTCCTTAAACTTTTTTTTACACTCAGTGTGGTATTTAAACTAATTTTTTAATAATTTAGT
66 AATTGGTCCTTAAAC-TTTTTTTACACTCAGTGTGGTATTTAAACTAATTTTTTAATAATTTAGT
641268 TTTGTAATATTTTTGTATTTAATG
130 TTTGTAATATTTTTGTATTTAATG
*
641292 AATTAAATTATTTTAACAACAATTTTTTGACTTAATGGTATATGAAATCCTCAAACTTTTACAAA
1 ----AAATTATTCTAACAACAATTTTTTGACTTAATGGTATATGAAATCCTCAAACTTTTAC---
* * * *
641357 AAAAAAATTAATGTGGTCCTTGAAC-TTTTTTACACTGAGTGTTGTATTTAAACTGATTTTTTTT
59 -AAAAAA-TAAT-TGGTCCTTAAACTTTTTTTACACTCAGTGTGGTATTTAAACT-A-ATTTTTT
641421 AATAATTTAGTTTTGTAATATTTTT-TATTTAATG
119 AATAATTTAGTTTTGTAATATTTTTGTATTTAATG
641455 AA
1 AA
641457 TTAAATATCT
Statistics
Matches: 146, Mismatches: 7, Indels: 15
0.87 0.04 0.09
Matches are distributed among these distances:
158 56 0.38
159 2 0.01
162 33 0.23
163 13 0.09
164 42 0.29
ACGTcount: A:0.34, C:0.10, G:0.09, T:0.46
Consensus pattern (153 bp):
AAATTATTCTAACAACAATTTTTTGACTTAATGGTATATGAAATCCTCAAACTTTTACAAAAAAT
AATTGGTCCTTAAACTTTTTTTACACTCAGTGTGGTATTTAAACTAATTTTTTAATAATTTAGTT
TTGTAATATTTTTGTATTTAATG
Found at i:642236 original size:25 final size:26
Alignment explanation
Indices: 642188--642238 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
642178 GTGTTTTTTA
*
642188 ATTTTCAGAAACTAAAAATGAAAAAT
1 ATTTTCAGAAAATAAAAATGAAAAAT
* *
642214 ATTTTCTGAAAATAAAAATAAAAAA
1 ATTTTCAGAAAATAAAAATGAAAAA
642239 GGAAACATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.61, C:0.06, G:0.06, T:0.27
Consensus pattern (26 bp):
ATTTTCAGAAAATAAAAATGAAAAAT
Found at i:647026 original size:15 final size:16
Alignment explanation
Indices: 646991--647053 Score: 76
Period size: 16 Copynumber: 4.0 Consensus size: 16
646981 TTTTTCTCAA
*
646991 AAAAAATGAA-AATTTT
1 AAAAAAT-AATAATATT
647007 AAAAAATAATAATATT
1 AAAAAATAATAATATT
*
647023 AAAAAATAAAAAT-TT
1 AAAAAATAATAATATT
*
647038 TAAAAATAATAATATT
1 AAAAAATAATAATATT
647054 TTTTCAAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
15 15 0.37
16 26 0.63
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.32
Consensus pattern (16 bp):
AAAAAATAATAATATT
Found at i:647035 original size:32 final size:31
Alignment explanation
Indices: 646991--647053 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
646981 TTTTTCTCAA
*
646991 AAAAAATGAAAATTTTAAAAAATAATAATATT
1 AAAAAATAAAAATTTT-AAAAATAATAATATT
647023 AAAAAATAAAAATTTTAAAAATAATAATATT
1 AAAAAATAAAAATTTTAAAAATAATAATATT
647054 TTTTCAAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 15 0.50
32 15 0.50
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.32
Consensus pattern (31 bp):
AAAAAATAAAAATTTTAAAAATAATAATATT
Found at i:649357 original size:21 final size:21
Alignment explanation
Indices: 649332--649372 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
649322 GTTTATTTGA
*
649332 TGTTTATTTTCTATTTATGGT
1 TGTTTATTTGCTATTTATGGT
*
649353 TGTTTATTTGCTGTTTATGG
1 TGTTTATTTGCTATTTATGG
649373 CTCTTGATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.12, C:0.05, G:0.20, T:0.63
Consensus pattern (21 bp):
TGTTTATTTGCTATTTATGGT
Found at i:650139 original size:11 final size:11
Alignment explanation
Indices: 650123--650176 Score: 54
Period size: 11 Copynumber: 4.8 Consensus size: 11
650113 AATTACTTGA
650123 TGTTTATTTGT
1 TGTTTATTTGT
*
650134 TGTTTATTTGC
1 TGTTTATTTGT
* *
650145 TATTTAGTTGTT
1 TGTTTATTTG-T
*
650157 TTTTTATTTGT
1 TGTTTATTTGT
*
650168 TTTTTATTT
1 TGTTTATTT
650177 ACTATTTAGT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
11 28 0.78
12 8 0.22
ACGTcount: A:0.11, C:0.02, G:0.13, T:0.74
Consensus pattern (11 bp):
TGTTTATTTGT
Found at i:650163 original size:34 final size:34
Alignment explanation
Indices: 650125--650190 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
650115 TTACTTGATG
*
650125 TTTATTTGTTGTTTATTTGCTATTTAGTTGTTTT
1 TTTATTTGTTGTTTATTTACTATTTAGTTGTTTT
*
650159 TTTATTTGTTTTTTATTTACTATTTAGTTGTT
1 TTTATTTGTTGTTTATTTACTATTTAGTTGTT
650191 GTGAATTCAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.14, C:0.03, G:0.12, T:0.71
Consensus pattern (34 bp):
TTTATTTGTTGTTTATTTACTATTTAGTTGTTTT
Found at i:651270 original size:29 final size:29
Alignment explanation
Indices: 651238--651314 Score: 91
Period size: 29 Copynumber: 2.7 Consensus size: 29
651228 AGAGCTTCAA
* * **
651238 TTTGTGTTGATGGATGTTAAGAGGGATTT
1 TTTGTGTTAATGGATGTTAACAGCCATTT
* *
651267 TTTGTGTTCATGGATGTTAACTGCCATTT
1 TTTGTGTTAATGGATGTTAACAGCCATTT
*
651296 TTTGTGTTAATAGATGTTA
1 TTTGTGTTAATGGATGTTA
651315 TATGTCATCT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.21, C:0.05, G:0.26, T:0.48
Consensus pattern (29 bp):
TTTGTGTTAATGGATGTTAACAGCCATTT
Found at i:651327 original size:29 final size:29
Alignment explanation
Indices: 651266--651331 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
651256 AAGAGGGATT
* * *
651266 TTTTGTGTTCATGGATGTTAACTGCCATT
1 TTTTGTGTTAATAGATGTTAACTGCCATC
*
651295 TTTTGTGTTAATAGATGTTATA-TGTCATC
1 TTTTGTGTTAATAGATGTTA-ACTGCCATC
651324 TTTTGTGT
1 TTTTGTGT
651332 CATTTTTGTG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 31 0.97
30 1 0.03
ACGTcount: A:0.18, C:0.09, G:0.20, T:0.53
Consensus pattern (29 bp):
TTTTGTGTTAATAGATGTTAACTGCCATC
Found at i:651678 original size:35 final size:35
Alignment explanation
Indices: 651632--651726 Score: 154
Period size: 35 Copynumber: 2.7 Consensus size: 35
651622 TTTATGTTCA
* *
651632 AAATTTCAAAATACTTCAATTACATTCTAAACCCC
1 AAATTCCAAAATACTTCAATTACATTCTAAAACCC
*
651667 AAATTCCAAAATACTTCAATTACATTTTAAAACCC
1 AAATTCCAAAATACTTCAATTACATTCTAAAACCC
*
651702 ACATTCCAAAATACTTCAATTACAT
1 AAATTCCAAAATACTTCAATTACAT
651727 GCTCAACCTC
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 56 1.00
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (35 bp):
AAATTCCAAAATACTTCAATTACATTCTAAAACCC
Found at i:656925 original size:27 final size:27
Alignment explanation
Indices: 656877--656969 Score: 91
Period size: 27 Copynumber: 3.5 Consensus size: 27
656867 TACTTCAGTA
656877 TGATGCATAG--TTCCACCTTTCAAGG
1 TGATGCATAGTATTCCACCTTTCAAGG
* *
656902 TGATGCATAGTATTCCGCCTTTCAAGT
1 TGATGCATAGTATTCCACCTTTCAAGG
* * * * * *
656929 TGTTGGATAGTATTCAATCGTTCAGGG
1 TGATGCATAGTATTCCACCTTTCAAGG
*
656956 TGATGCAGAGTATT
1 TGATGCATAGTATT
656970 TCATCTTTTG
Statistics
Matches: 53, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
25 10 0.19
27 43 0.81
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (27 bp):
TGATGCATAGTATTCCACCTTTCAAGG
Found at i:657889 original size:2 final size:2
Alignment explanation
Indices: 657882--657963 Score: 96
Period size: 2 Copynumber: 41.5 Consensus size: 2
657872 TGCTTGTGGT
* * ** *
657882 TA TA TA TA TA TA TA TA TA TA TT TA TG GG TA TA TGA AA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA
657924 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
657964 GTTATGATAA
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
1 2 0.03
2 66 0.96
3 1 0.01
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (2 bp):
TA
Found at i:658662 original size:18 final size:18
Alignment explanation
Indices: 658639--658674 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
658629 ATATATATAT
658639 CCATCAGCAAAAAAGAAA
1 CCATCAGCAAAAAAGAAA
* *
658657 CCATCATCAACAAAGAAA
1 CCATCAGCAAAAAAGAAA
658675 AAACATAACC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.58, C:0.25, G:0.08, T:0.08
Consensus pattern (18 bp):
CCATCAGCAAAAAAGAAA
Found at i:659690 original size:12 final size:12
Alignment explanation
Indices: 659673--659698 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
659663 TATATATAAC
659673 ATATATGTTATT
1 ATATATGTTATT
659685 ATATATGTTATT
1 ATATATGTTATT
659697 AT
1 AT
659699 TAAATAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.58
Consensus pattern (12 bp):
ATATATGTTATT
Found at i:668488 original size:42 final size:42
Alignment explanation
Indices: 668420--668501 Score: 137
Period size: 42 Copynumber: 2.0 Consensus size: 42
668410 CACGAATTTA
* *
668420 TAAATCCTTCGGGTCATCTGTCAGTCTTTCGAGCATGATGCT
1 TAAAACCTTCGGGTCATCTGTCAGTCTTTCGAGCAAGATGCT
*
668462 TAAAACCTTCGGGTCATCTGTTAGTCTTTCGAGCAAGATG
1 TAAAACCTTCGGGTCATCTGTCAGTCTTTCGAGCAAGATG
668502 ATAAGTCCTT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.34
Consensus pattern (42 bp):
TAAAACCTTCGGGTCATCTGTCAGTCTTTCGAGCAAGATGCT
Found at i:668547 original size:251 final size:251
Alignment explanation
Indices: 668063--668549 Score: 841
Period size: 251 Copynumber: 1.9 Consensus size: 251
668053 TTGTTTTGAA
* * * * *
668063 AATGAGAAAACAATTTTCAACGTTTCTCATTTAATCTTTTCAAGAAAATGAAATTTTTGAAAAGT
1 AATGAGAAAACAAGTATCAAAGTTTCTCATTCAA-CTGTTCAAGAAAATGAAATTTTTGAAAAGT
668128 AAGAAAGTTTCTTACCCAGTAAATTATTTCCCACGAATTTATAAATCCTTCGGGTCATCTGTCAG
65 AAGAAAGTTTCTTACCCAGTAAATTATTTCCCACGAATTTATAAATCCTTCGGGTCATCTGTCAG
668193 TCTTTCGAGCATGATGCTTAAAACATTCGGGTCATCTGTTAGTCTTTCGAGCAAGATGATAAGTC
130 TCTTTCGAGCATGATGCTTAAAACATTCGGGTCATCTGTTAGTCTTTCGAGCAAGATGATAAGTC
*
668258 CATAGGGCCATCCGTCAAACCTTTGGGTAGGATGTTTACATGTGATTTTCGTATAAG
195 CATAGGGCCATCCGTCAAACCTTTGGGCAGGATGTTTACATGTGATTTTCGTATAAG
*
668315 AATGAGAAAACGAGTATCAAAGTTTCTCATTCAA-TGTTCAAAGAAAATGAAATTTTTGAAAAGT
1 AATGAGAAAACAAGTATCAAAGTTTCTCATTCAACTGTTC-AAGAAAATGAAATTTTTGAAAAGT
**
668379 AAGAAAGTTTCTTACCTGGTAAATTATTTCCCACGAATTTATAAATCCTTCGGGTCATCTGTCAG
65 AAGAAAGTTTCTTACCCAGTAAATTATTTCCCACGAATTTATAAATCCTTCGGGTCATCTGTCAG
*
668444 TCTTTCGAGCATGATGCTTAAAACCTTCGGGTCATCTGTTAGTCTTTCGAGCAAGATGATAAGTC
130 TCTTTCGAGCATGATGCTTAAAACATTCGGGTCATCTGTTAGTCTTTCGAGCAAGATGATAAGTC
* *
668509 CTTAGGGCCATCCGTCAGACCTTTGGGCAGGATGTTTACAT
195 CATAGGGCCATCCGTCAAACCTTTGGGCAGGATGTTTACAT
668550 TCTTTATCGA
Statistics
Matches: 222, Mismatches: 12, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
250 4 0.02
251 189 0.85
252 29 0.13
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33
Consensus pattern (251 bp):
AATGAGAAAACAAGTATCAAAGTTTCTCATTCAACTGTTCAAGAAAATGAAATTTTTGAAAAGTA
AGAAAGTTTCTTACCCAGTAAATTATTTCCCACGAATTTATAAATCCTTCGGGTCATCTGTCAGT
CTTTCGAGCATGATGCTTAAAACATTCGGGTCATCTGTTAGTCTTTCGAGCAAGATGATAAGTCC
ATAGGGCCATCCGTCAAACCTTTGGGCAGGATGTTTACATGTGATTTTCGTATAAG
Found at i:668747 original size:3 final size:3
Alignment explanation
Indices: 668739--668859 Score: 79
Period size: 3 Copynumber: 38.7 Consensus size: 3
668729 TGTCCGTTTA
* * *
668739 TAT TAT TAT TAT ATAT AAT ATAT ATGT TAT TA- TAT ATGT TAT TAT TA-
1 TAT TAT TAT TAT -TAT TAT -TAT -TAT TAT TAT TAT -TAT TAT TAT TAT
* *
668786 TAT ATAT TAT TAAT TA- TAT ATGT TAT TAT TA- TAT ATGT TAT TAT TAT
1 TAT -TAT TAT T-AT TAT TAT -TAT TAT TAT TAT TAT -TAT TAT TAT TAT
*
668833 ATAT TAT TAT TAA TAT TAT TAT TAT TA
1 -TAT TAT TAT TAT TAT TAT TAT TAT TA
668860 AATAATATTA
Statistics
Matches: 94, Mismatches: 12, Indels: 24
0.72 0.09 0.18
Matches are distributed among these distances:
2 8 0.09
3 63 0.67
4 23 0.24
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:668802 original size:31 final size:29
Alignment explanation
Indices: 668756--668869 Score: 112
Period size: 28 Copynumber: 3.9 Consensus size: 29
668746 ATTATATATA
*
668756 ATATATATGTTATTA-TATATGTTATTATT
1 ATATATATGTTATTATTATAT-ATATTATT
*
668785 ATATATA--TTATTAATTATATATGTTATT
1 ATATATATGTTATT-ATTATATATATTATT
668813 ATTATATATGTTATTATTATATATTATTATT
1 A-TATATATGTTATTATTATATA-TATTATT
* *
668844 A-ATAT-TATTATTATTAAATAATATTA
1 ATATATATGTTATTATTATAT-ATATTA
668870 CAAAGCCCAA
Statistics
Matches: 73, Mismatches: 5, Indels: 15
0.78 0.05 0.16
Matches are distributed among these distances:
27 5 0.07
28 25 0.34
29 23 0.32
30 8 0.11
31 12 0.16
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (29 bp):
ATATATATGTTATTATTATATATATTATT
Found at i:668858 original size:15 final size:15
Alignment explanation
Indices: 668736--668869 Score: 141
Period size: 15 Copynumber: 8.8 Consensus size: 15
668726 TTTTGTCCGT
668736 TTATAT-TATTATTA
1 TTATATATATTATTA
*
668750 TATATAATATATATGTTA
1 T-TAT-ATATAT-TATTA
*
668768 TTATATATGTTATTA
1 TTATATATATTATTA
668783 TTATATATATTATTAA
1 TTATATATATTATT-A
*
668799 TTATATATGTTATTA
1 TTATATATATTATTA
*
668814 TTATATATGTTATTA
1 TTATATATATTATTA
668829 -T-TATATATTATTA
1 TTATATATATTATTA
668842 TTA-ATATTATTATTA
1 TTATATA-TATTATTA
*
668857 TTAAATAATATTA
1 TTATAT-ATATTA
668870 CAAAGCCCAA
Statistics
Matches: 104, Mismatches: 6, Indels: 18
0.81 0.05 0.14
Matches are distributed among these distances:
13 11 0.11
14 6 0.06
15 47 0.45
16 28 0.27
17 7 0.07
18 5 0.05
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (15 bp):
TTATATATATTATTA
Found at i:669803 original size:3 final size:3
Alignment explanation
Indices: 669797--669826 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
669787 AGGCGGCGGC
669797 GGA GGA GGA GGA GGA GGA GGA GGA GG- GGA G
1 GGA GGA GGA GGA GGA GGA GGA GGA GGA GGA G
669827 AGAATGGATA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 24 0.92
ACGTcount: A:0.30, C:0.00, G:0.70, T:0.00
Consensus pattern (3 bp):
GGA
Found at i:674461 original size:28 final size:29
Alignment explanation
Indices: 674421--674478 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 29
674411 CAATGTAAGT
*
674421 CATACATGCGTGTCA-TAAATTTATGACG
1 CATAAATGCGTGTCACTAAATTTATGACG
* *
674449 CATAAATGTGTGTCATCTTAATTTATGACG
1 CATAAATGCGTGTCA-CTAAATTTATGACG
674479 GGGGCTTCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 13 0.52
30 12 0.48
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (29 bp):
CATAAATGCGTGTCACTAAATTTATGACG
Found at i:674463 original size:85 final size:85
Alignment explanation
Indices: 674368--674525 Score: 289
Period size: 85 Copynumber: 1.9 Consensus size: 85
674358 ACGACACAAG
* *
674368 AATGTGTGTCATCTTAATTTATGACGGGGGCTTCAATGACGCGCAATGTAAGTCATACATGCGTG
1 AATGTGTGTCATCTTAATTTATGACGGGGGCTTCAATGACGCGCAATGTAAATCATACATGCGCG
674433 TCATAAATTTATGACGCATA
66 TCATAAATTTATGACGCATA
*
674453 AATGTGTGTCATCTTAATTTATGACGGGGGCTTCAATGACGCGCAATGTAAATCATACATGTGCG
1 AATGTGTGTCATCTTAATTTATGACGGGGGCTTCAATGACGCGCAATGTAAATCATACATGCGCG
674518 TCATAAAT
66 TCATAAAT
674526 GCGTGTCATA
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 70 1.00
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (85 bp):
AATGTGTGTCATCTTAATTTATGACGGGGGCTTCAATGACGCGCAATGTAAATCATACATGCGCG
TCATAAATTTATGACGCATA
Found at i:674521 original size:13 final size:13
Alignment explanation
Indices: 674505--674548 Score: 61
Period size: 13 Copynumber: 3.4 Consensus size: 13
674495 GCAATGTAAA
* *
674505 TCATACATGTGCG
1 TCATAAATGCGCG
*
674518 TCATAAATGCGTG
1 TCATAAATGCGCG
674531 TCATAAATGCGCG
1 TCATAAATGCGCG
674544 TCATA
1 TCATA
674549 GATTTATGAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (13 bp):
TCATAAATGCGCG
Found at i:676489 original size:21 final size:21
Alignment explanation
Indices: 676463--676560 Score: 178
Period size: 21 Copynumber: 4.7 Consensus size: 21
676453 CATTAGTGCA
676463 GATGCATGGATGCACTGCAGG
1 GATGCATGGATGCACTGCAGG
676484 GATGCATGGATGCACTGCAGG
1 GATGCATGGATGCACTGCAGG
*
676505 GATGCATGGATGCACTGTAGG
1 GATGCATGGATGCACTGCAGG
*
676526 GATGCATGGATGCACTGTAGG
1 GATGCATGGATGCACTGCAGG
676547 GATGCATGGATGCA
1 GATGCATGGATGCA
676561 TTTTGACACT
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
21 76 1.00
ACGTcount: A:0.24, C:0.16, G:0.38, T:0.21
Consensus pattern (21 bp):
GATGCATGGATGCACTGCAGG
Found at i:676497 original size:63 final size:63
Alignment explanation
Indices: 676422--676562 Score: 198
Period size: 63 Copynumber: 2.2 Consensus size: 63
676412 CGATGTTTTA
*
676422 ATGCATGGATGCATTGCA-TGATGCATCGATGCA-T-TAGTGCAGATGCATGGATGCACTGCAGG
1 ATGCATGGATGCATTGCAGGGATGCATCGATGCACTGTAG-G--GATGCATGGATGCACTGCAGG
676484 G
63 G
* * *
676485 ATGCATGGATGCACTGCAGGGATGCATGGATGCACTGTAGGGATGCATGGATGCACTGTAGGG
1 ATGCATGGATGCATTGCAGGGATGCATCGATGCACTGTAGGGATGCATGGATGCACTGCAGGG
676548 ATGCATGGATGCATT
1 ATGCATGGATGCATT
676563 TTGACACTCT
Statistics
Matches: 70, Mismatches: 5, Indels: 6
0.86 0.06 0.07
Matches are distributed among these distances:
63 52 0.74
64 13 0.19
65 2 0.03
66 3 0.04
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.25
Consensus pattern (63 bp):
ATGCATGGATGCATTGCAGGGATGCATCGATGCACTGTAGGGATGCATGGATGCACTGCAGGG
Found at i:676663 original size:29 final size:29
Alignment explanation
Indices: 676642--676699 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 29
676632 AAACTTTGAA
676642 TAAATTCAATT-AAGTCCAAAAACATTTTG
1 TAAATTCAATTCAAGTCCAAAAACA-TTTG
676671 TAAATTCAATTCAAGTCCAAAAACCATTT
1 TAAATTCAATTCAAGTCCAAAAA-CATTT
676700 TGCCTTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 11 0.41
30 14 0.52
31 2 0.07
ACGTcount: A:0.45, C:0.17, G:0.05, T:0.33
Consensus pattern (29 bp):
TAAATTCAATTCAAGTCCAAAAACATTTG
Found at i:676689 original size:30 final size:30
Alignment explanation
Indices: 676642--676701 Score: 104
Period size: 29 Copynumber: 2.0 Consensus size: 30
676632 AAACTTTGAA
676642 TAAATTCAATTAAGTCCAAAAA-CATTTTG
1 TAAATTCAATTAAGTCCAAAAACCATTTTG
676671 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATT-AAGTCCAAAAACCATTTTG
676702 CCTTAAATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 11 0.38
30 11 0.38
31 7 0.24
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (30 bp):
TAAATTCAATTAAGTCCAAAAACCATTTTG
Found at i:679973 original size:20 final size:21
Alignment explanation
Indices: 679898--679975 Score: 108
Period size: 20 Copynumber: 3.8 Consensus size: 21
679888 TTACAGCCTT
*
679898 GATGCATAGATGCA-TAGCAG
1 GATGCATCGATGCACTAGCAG
679918 GATGCATCGATGCA-TAGCAAG
1 GATGCATCGATGCACTAGC-AG
*
679939 GATGCATCGATGCACT-TCAG
1 GATGCATCGATGCACTAGCAG
679959 GATGCATCGATGCACTA
1 GATGCATCGATGCACTA
679976 ATTGCATTCG
Statistics
Matches: 53, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
20 35 0.66
21 17 0.32
22 1 0.02
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.22
Consensus pattern (21 bp):
GATGCATCGATGCACTAGCAG
Found at i:680198 original size:30 final size:30
Alignment explanation
Indices: 680151--680210 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
680141 AAACTTTGAA
680151 TAAATTCAATTAAGTCCAAAAAC-ATTTTG
1 TAAATTCAATTAAGTCCAAAAACAATTTTG
680180 TAAATTCAATTCAAGTCCAAAAACAATTTTG
1 TAAATTCAATT-AAGTCCAAAAACAATTTTG
680211 CCTTAAATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 11 0.38
30 12 0.41
31 6 0.21
ACGTcount: A:0.45, C:0.15, G:0.07, T:0.33
Consensus pattern (30 bp):
TAAATTCAATTAAGTCCAAAAACAATTTTG
Found at i:682289 original size:29 final size:30
Alignment explanation
Indices: 682256--682321 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 30
682246 ACAAGCCTTA
* *
682256 GAAAATTTGAGGACCATTTCAT-AATTTTT
1 GAAAATTTGAGGACCAATTCATAAATTTTG
* * * *
682285 GAAAAGTTGGGGATCAATTCGTAAATTTTG
1 GAAAATTTGAGGACCAATTCATAAATTTTG
682315 GAAAATT
1 GAAAATT
682322 GATGGGTTGT
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
29 17 0.59
30 12 0.41
ACGTcount: A:0.36, C:0.08, G:0.20, T:0.36
Consensus pattern (30 bp):
GAAAATTTGAGGACCAATTCATAAATTTTG
Found at i:682989 original size:59 final size:59
Alignment explanation
Indices: 682926--683447 Score: 385
Period size: 59 Copynumber: 8.9 Consensus size: 59
682916 TAGCATTATA
*
682926 TGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGAATTTCCATATGGAGCACTGAG
1 TGTGCTAAAATGATAAGGAAATCATACTGAATGTATGAATTTCCATATGGAGCACTGAG
* * * * * * *
682985 TGTGCTAAAATGATAAGGAAATCATATTGAATATATGGATTTCCAGACAGG-GCA-TTATA
1 TGTGCTAAAATGATAAGGAAATCATACTGAATGTATGAATTTCCATA-TGGAGCACTGA-G
* * *
683044 TGTGCTAAAATGGTAAGGGAATCATACTGAGTGTATGAATTTCCATATGGAGCACTGAG
1 TGTGCTAAAATGATAAGGAAATCATACTGAATGTATGAATTTCCATATGGAGCACTGAG
* * * * *
683103 TGTGCTAAAATGATAAGGAAATCATATTGAATATATGGATTTCCATATGG-GCA-TTATA
1 TGTGCTAAAATGATAAGGAAATCATACTGAATGTATGAATTTCCATATGGAGCACTGA-G
* * * * ** * *
683161 TGTGCTAAAATGGTAAGGGAATCATACT-AAGTGTATGGATTTCCAGATAAAGCATTAAG
1 TGTGCTAAAATGATAAGGAAATCATACTGAA-TGTATGAATTTCCATATGGAGCACTGAG
* * * * * *
683220 TGTGCTACAAGGATAAGGAAATCATACT-AATGGTATAAATTTTCATAT-AAGGCACTTCA-
1 TGTGCTAAAATGATAAGGAAATCATACTGAAT-GTATGAATTTCCATATGGA-GCAC-TGAG
* * **
683279 TGTGCTAAAAATTG-TAAAGG-AATCATACT-AATGGTATGGATTCTCGA-ATAGG-GCACTTCG
1 TGTGCT-AAAA-TGAT-AAGGAAATCATACTGAAT-GTATGAATT-TCCATAT-GGAGCACTGAG
* * * * *
683339 TGTGCTAAAATGAGAAGGAAATCATA-TTAAGTATATG-ATATTCCAGATAGAGCACTGAG
1 TGTGCTAAAATGATAAGGAAATCATACTGAA-TGTATGAAT-TTCCATATGGAGCACTGAG
* * * * *
683398 AGTGCTAATATTATAAGGAAATTATA-TAAATTGTATGAATTTCC-TATGGA
1 TGTGCTAAAATGATAAGGAAATCATACTGAA-TGTATGAATTTCCATATGGA
683448 ATGTATGGAT
Statistics
Matches: 367, Mismatches: 70, Indels: 53
0.75 0.14 0.11
Matches are distributed among these distances:
57 4 0.01
58 67 0.18
59 242 0.66
60 47 0.13
61 7 0.02
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.31
Consensus pattern (59 bp):
TGTGCTAAAATGATAAGGAAATCATACTGAATGTATGAATTTCCATATGGAGCACTGAG
Found at i:683068 original size:118 final size:116
Alignment explanation
Indices: 682918--683385 Score: 532
Period size: 118 Copynumber: 4.0 Consensus size: 116
682908 TTACCAAATA
* *
682918 GCATTATATGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGAATTTCCATATGGAGCACTG
1 GCATTATATGTGCTAAAATGGTAAGGGAATCATACTGAGTGTATGAATTTCCATATGGAGCACTG
682983 AGTGTGCTAAAATGATAAGGAAATCATATTGAATATATGGATTTCCAGACAGG
66 AGTGTGCTAAAATGATAAGGAAATCATATT-AATATATGGATTTCCAGA-AGG
683036 GCATTATATGTGCTAAAATGGTAAGGGAATCATACTGAGTGTATGAATTTCCATATGGAGCACTG
1 GCATTATATGTGCTAAAATGGTAAGGGAATCATACTGAGTGTATGAATTTCCATATGGAGCACTG
* *
683101 AGTGTGCTAAAATGATAAGGAAATCATATTGAATATATGGATTTCCATATGG
66 AGTGTGCTAAAATGATAAGGAAATCATATT-AATATATGGATTTCCAGAAGG
* * * ** * *
683153 GCATTATATGTGCTAAAATGGTAAGGGAATCATACTAAGTGTATGGATTTCCAGATAAAGCATTA
1 GCATTATATGTGCTAAAATGGTAAGGGAATCATACTGAGTGTATGAATTTCCATATGGAGCACTG
* * * * ** * * *
683218 AGTGTGCTACAAGGATAAGGAAATCATACTAATGGTATAAATTTTCATATAAG
66 AGTGTGCTAAAATGATAAGGAAATCATATTAAT-ATATGGATTTCCAGA-AGG
* * * * * *
683271 GCACTT-CATGTGCTAAAAATTGTAAAGGAATCATACT-AATGGTATGGATTCTCGA-ATAGG-G
1 GCA-TTATATGTGCT-AAAATGGTAAGGGAATCATACTGAGT-GTATGAATT-TCCATAT-GGAG
** *
683332 CACTTCGTGTGCTAAAATGAGAAGGAAATCATATTAAGTATAT-GATATTCCAGA
61 CACTGAGTGTGCTAAAATGATAAGGAAATCATATTAA-TATATGGAT-TTCCAGA
683386 TAGAGCACTG
Statistics
Matches: 303, Mismatches: 38, Indels: 17
0.85 0.11 0.05
Matches are distributed among these distances:
116 3 0.01
117 98 0.32
118 126 0.42
119 72 0.24
120 4 0.01
ACGTcount: A:0.37, C:0.11, G:0.22, T:0.30
Consensus pattern (116 bp):
GCATTATATGTGCTAAAATGGTAAGGGAATCATACTGAGTGTATGAATTTCCATATGGAGCACTG
AGTGTGCTAAAATGATAAGGAAATCATATTAATATATGGATTTCCAGAAGG
Found at i:683312 original size:60 final size:61
Alignment explanation
Indices: 683234--683364 Score: 164
Period size: 60 Copynumber: 2.2 Consensus size: 61
683224 CTACAAGGAT
*
683234 AAGGAAATCATACTAATGGTATAAATTTTC-ATATAAGGCACTTCATGTGCTAAAAATTGTA
1 AAGGAAATCATACTAATGGTATAAATTCTCGA-ATAAGGCACTTCATGTGCTAAAAATTGTA
** * *
683295 AAGG-AATCATACTAATGGTATGGATTCTCGAATAGGGCACTTCGTGTGCT-AAAA-TG-A
1 AAGGAAATCATACTAATGGTATAAATTCTCGAATAAGGCACTTCATGTGCTAAAAATTGTA
683352 GAAGGAAATCATA
1 -AAGGAAATCATA
683365 TTAAGTATAT
Statistics
Matches: 62, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
57 1 0.02
58 6 0.10
59 11 0.18
60 39 0.63
61 5 0.08
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.29
Consensus pattern (61 bp):
AAGGAAATCATACTAATGGTATAAATTCTCGAATAAGGCACTTCATGTGCTAAAAATTGTA
Found at i:683668 original size:45 final size:44
Alignment explanation
Indices: 683506--683706 Score: 294
Period size: 45 Copynumber: 4.5 Consensus size: 44
683496 GATGCAAATT
* *
683506 ATAGCAAGTATATTGGTAAAATAAGCTTACGAGCTTTTGGAATA
1 ATAGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAATA
683550 ATAGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAATA
1 ATAGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAATA
* *
683594 ATAGTAAGTATATATTGGTAAAATAAGCTTACGAGCTTAGGGATTTA
1 ATAGTAAG--TATATTGGTAAAATAAGCTTACGAGCTTATGGA-ATA
*
683641 ATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAATAA
1 ATAGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAAT-A
* * *
683686 ATGGTATGTATATTGATAAAA
1 ATAGTAAGTATATTGGTAAAA
683707 AAATTTATAG
Statistics
Matches: 144, Mismatches: 9, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
44 51 0.35
45 52 0.36
46 32 0.22
47 9 0.06
ACGTcount: A:0.40, C:0.06, G:0.21, T:0.33
Consensus pattern (44 bp):
ATAGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAATA
Found at i:683671 original size:91 final size:90
Alignment explanation
Indices: 683514--683685 Score: 299
Period size: 91 Copynumber: 1.9 Consensus size: 90
683504 TTATAGCAAG
**
683514 TATATTGGTAAAATAAGCTTACGAGCTTTTGGAATAATAGTAAGTATATTGGTAAAATAAGCTTA
1 TATATTGGTAAAATAAGCTTACGAGCTTAGGGAATAATAGTAAGTATATTGGTAAAATAAGCTTA
683579 CGAGCTTATGGAATAATAGTAAGTA
66 CGAGCTTATGGAATAATAGTAAGTA
* *
683604 TATATTGGTAAAATAAGCTTACGAGCTTAGGGATTTAATGGTAAGTATATTGGTAAAATAAGCTT
1 TATATTGGTAAAATAAGCTTACGAGCTTAGGGA-ATAATAGTAAGTATATTGGTAAAATAAGCTT
683669 ACGAGCTTATGGAATAA
65 ACGAGCTTATGGAATAA
683686 ATGGTATGTA
Statistics
Matches: 77, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
90 31 0.40
91 46 0.60
ACGTcount: A:0.39, C:0.07, G:0.21, T:0.33
Consensus pattern (90 bp):
TATATTGGTAAAATAAGCTTACGAGCTTAGGGAATAATAGTAAGTATATTGGTAAAATAAGCTTA
CGAGCTTATGGAATAATAGTAAGTA
Found at i:684126 original size:21 final size:21
Alignment explanation
Indices: 684102--684141 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
684092 AGTAGCAGTT
*
684102 ACTGTAGCAGTGCATCGATGC
1 ACTGTAGCAGTGAATCGATGC
684123 ACTGTAGCAGTGAATCGAT
1 ACTGTAGCAGTGAATCGAT
684142 ACACATTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (21 bp):
ACTGTAGCAGTGAATCGATGC
Found at i:689375 original size:17 final size:18
Alignment explanation
Indices: 689355--689388 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
689345 TTTGAATGAT
689355 AATTATTAATTA-AGAAG
1 AATTATTAATTATAGAAG
*
689372 AATTATTCATTATAGAA
1 AATTATTAATTATAGAA
689389 TATGAAACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.03, G:0.09, T:0.38
Consensus pattern (18 bp):
AATTATTAATTATAGAAG
Found at i:693508 original size:19 final size:19
Alignment explanation
Indices: 693484--693527 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
693474 AGAATTCCAC
693484 GAAGGAGATCTACTGCTTA
1 GAAGGAGATCTACTGCTTA
*
693503 GAAGGAGATCTAGTGCTTA
1 GAAGGAGATCTACTGCTTA
693522 GAAGGA
1 GAAGGA
693528 TATTACCTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.34, C:0.11, G:0.32, T:0.23
Consensus pattern (19 bp):
GAAGGAGATCTACTGCTTA
Found at i:693723 original size:9 final size:8
Alignment explanation
Indices: 693711--693803 Score: 62
Period size: 8 Copynumber: 10.8 Consensus size: 8
693701 ATAAAATAAG
693711 GAAAAAAA
1 GAAAAAAA
*
693719 TGAAAAGAA
1 -GAAAAAAA
*
693728 -AAAAAAT
1 GAAAAAAA
693735 GAAAAAAA
1 GAAAAAAA
693743 GAAGAAAATA
1 GAA-AAAA-A
693753 TGAAAAATGAAA
1 -G-AAAA--AAA
693765 GAAGAAAAA
1 GAA-AAAAA
*
693774 GAAAAAAT
1 GAAAAAAA
*
693782 GGAAAAAA
1 GAAAAAAA
*
693790 GAAGAAAA
1 GAAAAAAA
693798 GAAAAA
1 GAAAAA
693804 TAAATAAAAG
Statistics
Matches: 66, Mismatches: 10, Indels: 17
0.71 0.11 0.18
Matches are distributed among these distances:
7 5 0.08
8 30 0.45
9 17 0.26
10 3 0.05
11 6 0.09
12 3 0.05
13 2 0.03
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.06
Consensus pattern (8 bp):
GAAAAAAA
Found at i:693741 original size:26 final size:25
Alignment explanation
Indices: 693712--693812 Score: 77
Period size: 25 Copynumber: 4.1 Consensus size: 25
693702 TAAAATAAGG
*
693712 AAAAAAATGAAAAGAAAAAAAATGA
1 AAAAAAAAGAAAAGAAAAAAAATGA
* **
693737 AAAAAAGAAGAAAATATGAAAAATG-
1 AAAAAA-AAGAAAAGAAAAAAAATGA
* *
693762 --AAAGAAGAAAA-AGAAAAAATGGA
1 AAAAAAAAGAAAAGAAAAAAAAT-GA
*
693785 AAAAAGAAGAAAAGAAAAATAAAT-A
1 AAAAAAAAGAAAAGAAAAA-AAATGA
693810 AAA
1 AAA
693813 GGGGGTTCAA
Statistics
Matches: 61, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
21 7 0.11
22 8 0.13
23 3 0.05
25 21 0.34
26 18 0.30
27 4 0.07
ACGTcount: A:0.77, C:0.00, G:0.15, T:0.08
Consensus pattern (25 bp):
AAAAAAAAGAAAAGAAAAAAAATGA
Found at i:693802 original size:15 final size:14
Alignment explanation
Indices: 693721--693803 Score: 55
Period size: 15 Copynumber: 5.7 Consensus size: 14
693711 GAAAAAAATG
693721 AAAAGAAAAAA-AA
1 AAAAGAAAAAAGAA
*
693734 TGAAAA-AAAGAAGAA
1 --AAAAGAAAAAAGAA
* *
693749 AATATGAAAAATGAA
1 AA-AAGAAAAAAGAA
*
693764 AGAAG-AAAAAGAA
1 AAAAGAAAAAAGAA
693777 AAAATGGAAAAAAGAA
1 AAAA--GAAAAAAGAA
693793 GAAAAGAAAAA
1 -AAAAGAAAAA
693804 TAAATAAAAG
Statistics
Matches: 53, Mismatches: 8, Indels: 14
0.71 0.11 0.19
Matches are distributed among these distances:
13 12 0.23
14 8 0.15
15 21 0.40
16 8 0.15
17 4 0.08
ACGTcount: A:0.77, C:0.00, G:0.17, T:0.06
Consensus pattern (14 bp):
AAAAGAAAAAAGAA
Found at i:695542 original size:246 final size:244
Alignment explanation
Indices: 695087--695908 Score: 1112
Period size: 246 Copynumber: 3.3 Consensus size: 244
695077 ATTTTTCGAT
* * *
695087 TCTGATTTCCCCTGAATGAATAGCGGAGTAGACACAC-T-TTCCAAAATAGATCTGTCTACCCGA
1 TCTGATTTCCCCTGAATGCATAGCGGAGCA-A-ACACGTATTCC-AAATAGATTTGTCTACCCGA
* * *
695150 AAGAGAGGCACAAATCTAGTCTGATTTCCCCTGAATGCATGGTGGAGCAGACACGTATTCCAACA
63 AAGAGAGGCACATATCAAGTCTGATTTCCCCTGAATGCATGATGGAGCAGACACGTATTCCAACA
* * * *
695215 TGGATTTGTCTACCCAAAAAAGAGGCACAAATCTAGTCTGATTTCCCCTGAATGCATGGAGGAGA
128 TGGATTTGTCTACCCAAAAAAGAGGCACAAATCCAGTTTGATTTCCCCTGAATGCATGGTGGAGC
* *
695280 AGACACATTTTCCAACATTGATTTGTCTACCCTAAAAAGAGGCACAGATCAAG
193 AGACAC-GTTTCCAACATTGATTTGTCTACCCGAAAAAGAGGCACAGATCAAG
*
695333 TCTGATTTCCCCTGAATGCATAGCGGAGCAAACACGTATTCCAATATTGATTTGTCTACCCGAAA
1 TCTGATTTCCCCTGAATGCATAGCGGAGCAAACACGTATTCCAA-ATAGATTTGTCTACCCGAAA
* * * *
695398 GAGAGGTACGTATCAAGTCTGATTTCCCTTGAATGCATGATGGAGCAGACACGTATTCCAATATG
65 GAGAGGCACATATCAAGTCTGATTTCCCCTGAATGCATGATGGAGCAGACACGTATTCCAACATG
* *
695463 GATTTGTCTACCAAAAAAAGAGGCACAAATCCAGTTTGATTTCCCCTGAATGCATGGTGGAGCAT
130 GATTTGTCTACCCAAAAAAGAGGCACAAATCCAGTTTGATTTCCCCTGAATGCATGGTGGAGCAG
* *
695528 ACACGTTGTCCAACATTGATTTGTCTACCCGAAAAAGAGGCATAGACCAAG
195 ACACGTT-TCCAACATTGATTTGTCTACCCGAAAAAGAGGCACAGATCAAG
** * * * * *
695579 TCCAATTTCTCCTGAATGCATGGCGGAGCAGACACGTATTCCAGCATTGATTTGTCTACCCGAAA
1 TCTGATTTCCCCTGAATGCATAGCGGAGCAAACACGTATTCCA-AATAGATTTGTCTACCCGAAA
* * * *
695644 GAGAGGCACATATCAAGTCTGATTTCCCCTAAATGCATGGA-AGAGCGGACACGTATTCTAACAT
65 GAGAGGCACATATCAAGTCTGATTTCCCCTGAATGCAT-GATGGAGCAGACACGTATTCCAACAT
695708 GGATTTGTCTACCCAAAAAAGAGGCACAAATCCA-TTCTGATTTCCCCTGAATGCATGGTGGAGC
129 GGATTTGTCTACCCAAAAAAGAGGCACAAATCCAGTT-TGATTTCCCCTGAATGCATGGTGGAGC
* * * * *
695772 AGACACGTCTTCCCAAAATAGATATGTCTACCCGAGAAAGAGGCACATATCAAG
193 AGACACGT-TT-CCAACATTGATTTGTCTACCCGAAAAAGAGGCACAGATCAAG
** * * *
695826 TCTGACCTCCCCTGAATGCATAGTGGAGCAAACACGTCTTCCAGAATAGATATGTCTACCCGAAA
1 TCTGATTTCCCCTGAATGCATAGCGGAGCAAACACGTATTCCA-AATAGATTTGTCTACCCGAAA
* *
695891 AAGAGGAACATATCAAGT
65 GAGAGGCACATATCAAGT
695909 TTGACCTACC
Statistics
Matches: 509, Mismatches: 58, Indels: 17
0.87 0.10 0.03
Matches are distributed among these distances:
244 4 0.01
245 8 0.02
246 390 0.77
247 107 0.21
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (244 bp):
TCTGATTTCCCCTGAATGCATAGCGGAGCAAACACGTATTCCAAATAGATTTGTCTACCCGAAAG
AGAGGCACATATCAAGTCTGATTTCCCCTGAATGCATGATGGAGCAGACACGTATTCCAACATGG
ATTTGTCTACCCAAAAAAGAGGCACAAATCCAGTTTGATTTCCCCTGAATGCATGGTGGAGCAGA
CACGTTTCCAACATTGATTTGTCTACCCGAAAAAGAGGCACAGATCAAG
Found at i:695923 original size:82 final size:82
Alignment explanation
Indices: 695087--695908 Score: 957
Period size: 82 Copynumber: 10.0 Consensus size: 82
695077 ATTTTTCGAT
* * * * * * * *
695087 TCTGATTTCCCCTGAATGAATAGCGGAGTAGACACACT-TTCCAAAATAGATCTGTCTACCCGAA
1 TCTGATTTCCCCTGAATGCATGGTGGAGCAGACAC-GTATTCCAACATTGATTTGTCTACCCGAA
* *
695151 AGAGAGGCACAAATCTAG
65 AAAGAGGCACAAATCAAG
* *
695169 TCTGATTTCCCCTGAATGCATGGTGGAGCAGACACGTATTCCAACATGGATTTGTCTACCCAAAA
1 TCTGATTTCCCCTGAATGCATGGTGGAGCAGACACGTATTCCAACATTGATTTGTCTACCCGAAA
*
695234 AAGAGGCACAAATCTAG
66 AAGAGGCACAAATCAAG
* * * * *
695251 TCTGATTTCCCCTGAATGCATGGAGGAGAAGACACATTTTCCAACATTGATTTGTCTACCCTAAA
1 TCTGATTTCCCCTGAATGCATGGTGGAGCAGACACGTATTCCAACATTGATTTGTCTACCCGAAA
*
695316 AAGAGGCACAGATCAAG
66 AAGAGGCACAAATCAAG
* * * *
695333 TCTGATTTCCCCTGAATGCATAGCGGAGCAAACACGTATTCCAATATTGATTTGTCTACCCGAAA
1 TCTGATTTCCCCTGAATGCATGGTGGAGCAGACACGTATTCCAACATTGATTTGTCTACCCGAAA
* * **
695398 GAGAGGTACGTATCAAG
66 AAGAGGCACAAATCAAG
* * * * **
695415 TCTGATTTCCCTTGAATGCATGATGGAGCAGACACGTATTCCAATATGGATTTGTCTACCAAAAA
1 TCTGATTTCCCCTGAATGCATGGTGGAGCAGACACGTATTCCAACATTGATTTGTCTACCCGAAA
*
695480 AAGAGGCACAAATCCAG
66 AAGAGGCACAAATCAAG
* *
695497 TTTGATTTCCCCTGAATGCATGGTGGAGCATACACGT-TGTCCAACATTGATTTGTCTACCCGAA
1 TCTGATTTCCCCTGAATGCATGGTGGAGCAGACACGTAT-TCCAACATTGATTTGTCTACCCGAA
* * *
695561 AAAGAGGCATAGACCAAG
65 AAAGAGGCACAAATCAAG
** * * *
695579 TCCAATTTCTCCTGAATGCATGGCGGAGCAGACACGTATTCCAGCATTGATTTGTCTACCCGAAA
1 TCTGATTTCCCCTGAATGCATGGTGGAGCAGACACGTATTCCAACATTGATTTGTCTACCCGAAA
* *
695644 GAGAGGCACATATCAAG
66 AAGAGGCACAAATCAAG
* ** * * * *
695661 TCTGATTTCCCCTAAATGCATGGAAGAGCGGACACGTATTCTAACATGGATTTGTCTACCCAAAA
1 TCTGATTTCCCCTGAATGCATGGTGGAGCAGACACGTATTCCAACATTGATTTGTCTACCCGAAA
* *
695726 AAGAGGCACAAATCCAT
66 AAGAGGCACAAATCAAG
* * * * *
695743 TCTGATTTCCCCTGAATGCATGGTGGAGCAGACACGTCTTCCCAAAATAGATATGTCTACCCGAG
1 TCTGATTTCCCCTGAATGCATGGTGGAGCAGACACGTATT-CCAACATTGATTTGTCTACCCGAA
*
695808 AAAGAGGCACATATCAAG
65 AAAGAGGCACAAATCAAG
** * * * * *
695826 TCTGACCTCCCCTGAATGCATAGTGGAGCAAACACGTCTTCCAGA-ATAGATATGTCTACCCGAA
1 TCTGATTTCCCCTGAATGCATGGTGGAGCAGACACGTATTCCA-ACATTGATTTGTCTACCCGAA
* *
695890 AAAGAGGAACATATCAAG
65 AAAGAGGCACAAATCAAG
695908 T
1 T
695909 TTGACCTACC
Statistics
Matches: 634, Mismatches: 101, Indels: 10
0.85 0.14 0.01
Matches are distributed among these distances:
81 2 0.00
82 561 0.88
83 71 0.11
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (82 bp):
TCTGATTTCCCCTGAATGCATGGTGGAGCAGACACGTATTCCAACATTGATTTGTCTACCCGAAA
AAGAGGCACAAATCAAG
Found at i:696240 original size:2 final size:2
Alignment explanation
Indices: 696228--696318 Score: 103
Period size: 2 Copynumber: 45.5 Consensus size: 2
696218 TGTGGTCATG
*
696228 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * ** *
696270 TA TA TA TA TA TG TA TT TA TG GG TA TA TGA AA T- TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA
696312 TA TA TA T
1 TA TA TA T
696319 GTTATGATAA
Statistics
Matches: 75, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
1 1 0.01
2 73 0.97
3 1 0.01
ACGTcount: A:0.45, C:0.01, G:0.05, T:0.48
Consensus pattern (2 bp):
TA
Found at i:698021 original size:21 final size:21
Alignment explanation
Indices: 697995--698044 Score: 100
Period size: 21 Copynumber: 2.4 Consensus size: 21
697985 TGGAAATGAA
697995 GATGTTTATACATAATAGTCT
1 GATGTTTATACATAATAGTCT
698016 GATGTTTATACATAATAGTCT
1 GATGTTTATACATAATAGTCT
698037 GATGTTTA
1 GATGTTTA
698045 CTTTCTTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (21 bp):
GATGTTTATACATAATAGTCT
Found at i:706071 original size:16 final size:16
Alignment explanation
Indices: 706030--706071 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
706020 TTACCTTATG
706030 TAATACAAAATAATAT
1 TAATACAAAATAATAT
* *
706046 TAACTA-AAAATAGTCT
1 TAA-TACAAAATAATAT
706062 TAATACAAAA
1 TAATACAAAA
706072 AAGTGCTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 2 0.09
16 18 0.82
17 2 0.09
ACGTcount: A:0.60, C:0.10, G:0.02, T:0.29
Consensus pattern (16 bp):
TAATACAAAATAATAT
Found at i:707063 original size:2 final size:2
Alignment explanation
Indices: 707056--707088 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
707046 AAGATGTGCC
707056 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
707089 AACCTGCATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:716166 original size:100 final size:100
Alignment explanation
Indices: 715836--716158 Score: 422
Period size: 100 Copynumber: 3.2 Consensus size: 100
715826 AAAAGTTTTC
* * *
715836 TCACTTAAGAT-GTTTTT-TT-AAATCAATTTCGTCTTTCTTGAGATAGTTT-CCCTTGGAACAC
1 TCACTTAAGATGGTTTTTCTTAAAATCAATTTCATCTTTTTTGAAATA-TTTCCCCTTGGAACAC
* *** *
715897 AGATTTTGATTTTTTTTTTCACTCGAAACAAAAATGTA
65 AAATTTTGA--AAATTTTTCACTCGAAACAAAAATTTA
*
715935 TCACTTAAGATGGTTTTTCTTAAAATCAA-TTCATATTTTTTTGAAATATTTCCCCTTGGAACAC
1 TCACTTAAGATGGTTTTTCTTAAAATCAATTTCAT-CTTTTTTGAAATATTTCCCCTTGGAACAC
* *
715999 AAATTTTGAAAATTTTTCACCCGAAACAAAAAATTA
65 AAATTTTGAAAATTTTTCACTCGAAACAAAAATTTA
*
716035 TCACTTGAGATGGTTTTTCTTAAAATCAATTTCATCTTTTTTGAAATATTTCCCCTTGGAACACA
1 TCACTTAAGATGGTTTTTCTTAAAATCAATTTCATCTTTTTTGAAATATTTCCCCTTGGAACACA
* * *
716100 TATTTTGAAAATTTTTCACTCTAAACCAAAATTTA
66 AATTTTGAAAATTTTTCACTCGAAACAAAAATTTA
* *
716135 TCACTTTAGATGTTTTTTCTTAAA
1 TCACTTAAGATGGTTTTTCTTAAA
716159 TTAAATTTTG
Statistics
Matches: 198, Mismatches: 20, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
99 11 0.06
100 136 0.69
101 14 0.07
102 37 0.19
ACGTcount: A:0.32, C:0.16, G:0.09, T:0.43
Consensus pattern (100 bp):
TCACTTAAGATGGTTTTTCTTAAAATCAATTTCATCTTTTTTGAAATATTTCCCCTTGGAACACA
AATTTTGAAAATTTTTCACTCGAAACAAAAATTTA
Found at i:716735 original size:139 final size:139
Alignment explanation
Indices: 716485--717128 Score: 941
Period size: 139 Copynumber: 4.6 Consensus size: 139
716475 GATAAACTAG
* *
716485 TCAACATTTCCAGTGGATAGTTCATAATGAGAAGAACTCATCC-ATTGAGGGAGAATAAGTTCAT
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCGA-TGAGGGAGAAGAAGTTCAT
* ** *
716549 AATGAGAAGAACTTGTTCAAACTTAGCTCGATTTGTCACATATGGAGTTGAATCATCAACACCTC
65 AATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCAGCAACACCTC
*
716614 AGTCGAGGGA
130 ACTCGAGGGA
* * * * * *
716624 TCAACATTTCCAGTGGAGAATTCATAATGAGAAGAACTCTTCCGATGGGGGAGAATAATTTTATA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCGATGAGGGAGAAGAAGTTCATA
* * *
716689 ATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATTAGAAAAACCTCA
66 ATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCAGCAACACCTCA
716754 CTCGAGGGA
131 CTCGAGGGA
* * * *
716763 TCAAAATTTTCAGTGGAGAGTTCATAATGATAAGAACTCATCCGATGAGGGAGAAGAATTTCATA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCGATGAGGGAGAAGAAGTTCATA
* *
716828 ATGAGAAGAACTTGTTCAACCTTAGCTTGATTTATCACATATGGAGTTGAATCAGCAACACCTCA
66 ATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCAGCAACACCTCA
716893 CTCGAGGGA
131 CTCGAGGGA
* *
716902 TCAACATTTTCAGTGGAGAGTTTATAATGAGAAGAACTCATCCGATGAGGGAGAAGAAGTTCATA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCGATGAGGGAGAAGAAGTTCATA
* * *
716967 ATGAGAAGCACTTGTTCAACCTTAGCTCGATTCATCATATATGGAGTTGAATCAGTAACACCTCA
66 ATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCAGCAACACCTCA
*
717032 CTAGAGGGA
131 CTCGAGGGA
* * * * * *
717041 TCAATATTACCAATGGAGAGTTCATAATGAGAAGAACTCATCCAAAT-AGGGATAAGAAGTTCAA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCC-GATGAGGGAGAAGAAGTTCAT
*
717105 AATGAGAAGATCTTGTTCAACCTT
65 AATGAGAAGAACTTGTTCAACCTT
717129 TTGCTCGACT
Statistics
Matches: 456, Mismatches: 47, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
139 453 0.99
140 3 0.01
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (139 bp):
TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCGATGAGGGAGAAGAAGTTCATA
ATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCAGCAACACCTCA
CTCGAGGGA
Found at i:720933 original size:85 final size:82
Alignment explanation
Indices: 720784--720954 Score: 256
Period size: 85 Copynumber: 2.0 Consensus size: 82
720774 AAACTCAAAT
*
720784 TTTAGGATATTATTTTAAATATTATATTTTATCTTTACTTTATGTATTTTAGTTTAAATAGTTTT
1 TTTAGGATATTATTTTAAATATTATATTTTATCTTTACTTTAGGTATTTTAGTTTAAATAGTTTT
720849 AACTATTTTAATTAGGA
66 AACTATTTTAATTAGGA
720866 TTTAGGATATTA-TTTAAATATTATATTTTATC-TTATCTTTTTTGAGGTATTTTAGTTTAAATA
1 TTTAGGATATTATTTTAAATATTATATTTTATCTTTA-C---TTT-AGGTATTTTAGTTTAAATA
* *
720929 GTTTTAAGTATTTTAATTGGGA
61 GTTTTAACTATTTTAATTAGGA
720951 TTTA
1 TTTA
720955 TTTATTTATT
Statistics
Matches: 81, Mismatches: 3, Indels: 7
0.89 0.03 0.08
Matches are distributed among these distances:
80 3 0.04
81 21 0.26
82 12 0.15
84 3 0.04
85 42 0.52
ACGTcount: A:0.30, C:0.03, G:0.11, T:0.56
Consensus pattern (82 bp):
TTTAGGATATTATTTTAAATATTATATTTTATCTTTACTTTAGGTATTTTAGTTTAAATAGTTTT
AACTATTTTAATTAGGA
Found at i:721662 original size:4 final size:4
Alignment explanation
Indices: 721653--721677 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
721643 TCTTTATCTC
721653 AATT AATT AATT AATT AATT AATT A
1 AATT AATT AATT AATT AATT AATT A
721678 TATTTCTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
AATT
Found at i:727545 original size:27 final size:28
Alignment explanation
Indices: 727491--727563 Score: 103
Period size: 27 Copynumber: 2.6 Consensus size: 28
727481 AAATATACTA
* * *
727491 TTCGAACATTGCAGAAAAACTGATTTGG
1 TTCGAACAGTGCAGAAAAACAGACTTGG
727519 TTCGAACAGTGCAGAAAAA-AGACTTGG
1 TTCGAACAGTGCAGAAAAACAGACTTGG
*
727546 TTCGAACTGTGCAGAAAA
1 TTCGAACAGTGCAGAAAA
727564 TTTCGAACAG
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
27 23 0.56
28 18 0.44
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.23
Consensus pattern (28 bp):
TTCGAACAGTGCAGAAAAACAGACTTGG
Found at i:729699 original size:24 final size:23
Alignment explanation
Indices: 729665--729795 Score: 67
Period size: 24 Copynumber: 5.7 Consensus size: 23
729655 TTTTATCTTT
*
729665 GTTTTAGGTATTTTAGTTTAAATA
1 GTTTTAAGTATTTTA-TTTAAATA
* *
729689 GTTTTAAGTATTTTAATT--A-G
1 GTTTTAAGTATTTTATTTAAATA
* *
729709 GATTTAAG-ATATTATTTTAAATA
1 GTTTTAAGTATTTTA-TTTAAATA
* ** *
729732 -TTATATTA-TATTTTATCTTATCTTT
1 GTT-T-TAAGTATTTTAT-TTA-AATA
*
729757 GTTTTAGGTATTTTAGTTTAAATA
1 GTTTTAAGTATTTTA-TTTAAATA
729781 GTTTTAAGTATTTTA
1 GTTTTAAGTATTTTA
729796 ATTAGGATTT
Statistics
Matches: 76, Mismatches: 19, Indels: 24
0.64 0.16 0.20
Matches are distributed among these distances:
19 5 0.07
20 9 0.12
21 1 0.01
22 2 0.03
23 4 0.05
24 40 0.53
25 12 0.16
26 3 0.04
ACGTcount: A:0.31, C:0.02, G:0.11, T:0.56
Consensus pattern (23 bp):
GTTTTAAGTATTTTATTTAAATA
Found at i:730630 original size:29 final size:27
Alignment explanation
Indices: 730575--730632 Score: 71
Period size: 29 Copynumber: 2.1 Consensus size: 27
730565 TCTCAATTTA
* **
730575 TTTTATTTATTTATTTGTTTATTTAAT
1 TTTTATTTATTTATTTCTTTAAATAAT
730602 TTTTATCTTATTATATTTCTTTAAATAAT
1 TTTTAT-TTATT-TATTTCTTTAAATAAT
730631 TT
1 TT
730633 AAAAACTCAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 6 0.23
28 5 0.19
29 15 0.58
ACGTcount: A:0.26, C:0.03, G:0.02, T:0.69
Consensus pattern (27 bp):
TTTTATTTATTTATTTCTTTAAATAAT
Found at i:733129 original size:16 final size:16
Alignment explanation
Indices: 733098--733146 Score: 64
Period size: 17 Copynumber: 3.1 Consensus size: 16
733088 TTTTTTTATT
733098 TCGGGTCGGG-TTGGG
1 TCGGGTCGGGTTTGGG
*
733113 TCGTGTCGGGTTTGGG
1 TCGGGTCGGGTTTGGG
*
733129 TCGGGTTCGGGTTCGGG
1 TCGGG-TCGGGTTTGGG
733146 T
1 T
733147 GGAGGACTCC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
15 9 0.31
16 9 0.31
17 11 0.38
ACGTcount: A:0.00, C:0.14, G:0.53, T:0.33
Consensus pattern (16 bp):
TCGGGTCGGGTTTGGG
Found at i:733416 original size:15 final size:15
Alignment explanation
Indices: 733385--733414 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
733375 TTCAGTAATA
733385 TAAATTTCTACAATT
1 TAAATTTCTACAATT
733400 TAAATTT-TACAATT
1 TAAATTTCTACAATT
733414 T
1 T
733415 TATTTTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAAATTTCTACAATT
Found at i:739014 original size:26 final size:26
Alignment explanation
Indices: 738985--739041 Score: 114
Period size: 26 Copynumber: 2.2 Consensus size: 26
738975 GACATGCAGG
738985 TAGTTCTATCTATCTAGCATATTACA
1 TAGTTCTATCTATCTAGCATATTACA
739011 TAGTTCTATCTATCTAGCATATTACA
1 TAGTTCTATCTATCTAGCATATTACA
739037 TAGTT
1 TAGTT
739042 GTGAGCAGGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.30, C:0.18, G:0.09, T:0.44
Consensus pattern (26 bp):
TAGTTCTATCTATCTAGCATATTACA
Found at i:757675 original size:27 final size:26
Alignment explanation
Indices: 757645--757707 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 26
757635 GTTGAATGTG
*
757645 AAAAAAAACAGCAGTTCAAAA-AAAGA
1 AAAAAAAAAAGCAGTTCAAAAGAAA-A
*
757671 AAAAAAAAGAAGCTGTTCAAAAGAAAA
1 AAAAAAAA-AAGCAGTTCAAAAGAAAA
*
757698 AAGAAAAAAA
1 AAAAAAAAAA
757708 TACGTGAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 10 0.31
27 19 0.59
28 3 0.09
ACGTcount: A:0.71, C:0.08, G:0.13, T:0.08
Consensus pattern (26 bp):
AAAAAAAAAAGCAGTTCAAAAGAAAA
Done.