Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008719.1 Hibiscus syriacus cultivar Beakdansim tig00111774_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4817204
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 14 of 18
Found at i:3659643 original size:24 final size:24
Alignment explanation
Indices: 3659614--3659697 Score: 68
Period size: 24 Copynumber: 3.5 Consensus size: 24
3659604 ATTTGATCCC
3659614 TATATATTTTATAATTTATTTAAA
1 TATATATTTTATAATTTATTTAAA
*
3659638 TATATACTTTATACA--TATTTAAA
1 TATATATTTTATA-ATTTATTTAAA
* * *
3659661 -ATCTTATACTTAT-ATTTATTTATA
1 TAT-ATAT-TTTATAATTTATTTAAA
*
3659685 TATATATATTATA
1 TATATATTTTATA
3659698 CATATTTATA
Statistics
Matches: 46, Mismatches: 7, Indels: 14
0.69 0.10 0.21
Matches are distributed among these distances:
22 3 0.07
23 14 0.30
24 26 0.57
25 3 0.07
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (24 bp):
TATATATTTTATAATTTATTTAAA
Found at i:3659688 original size:2 final size:2
Alignment explanation
Indices: 3659671--3659733 Score: 58
Period size: 2 Copynumber: 32.0 Consensus size: 2
3659661 ATCTTATACT
* * * *
3659671 TA TA TT TA TT TA TA TA TA TA TA T- TA TA CA TA TT TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
3659712 CT- TA TT TA TA TA TA TA TA TA TA
1 -TA TA TA TA TA TA TA TA TA TA TA
3659734 CTTATAATGT
Statistics
Matches: 48, Mismatches: 10, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
1 2 0.04
2 45 0.94
3 1 0.02
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (2 bp):
TA
Found at i:3659721 original size:47 final size:45
Alignment explanation
Indices: 3659621--3659733 Score: 129
Period size: 47 Copynumber: 2.4 Consensus size: 45
3659611 CCCTATATAT
*
3659621 TTTATAATTTATTTAAATATATACTTTATACATATTTAAAATCTTA
1 TTTAT-ATTTATTTATATATATACTTTATACATATTTAAAATCTTA
*
3659667 TACTTATATTTATTTATATATATA-TATTATACATATTTATATATACTTA
1 T--TTATATTTATTTATATATATACT-TTATACATATTTA-AAAT-CTTA
* *
3659716 TTTATATATATATATATA
1 TTTATATTTATTTATATA
3659734 CTTATAATGT
Statistics
Matches: 58, Mismatches: 4, Indels: 9
0.82 0.06 0.13
Matches are distributed among these distances:
46 2 0.03
47 44 0.76
48 7 0.12
49 5 0.09
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (45 bp):
TTTATATTTATTTATATATATACTTTATACATATTTAAAATCTTA
Found at i:3665872 original size:21 final size:21
Alignment explanation
Indices: 3665846--3665909 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
3665836 TTTTGGTGCA
*
3665846 GAGGGAATCGATCCCCCCCAT
1 GAGGGAACCGATCCCCCCCAT
* **
3665867 GAGGGAACCGATTCCCCCTTT
1 GAGGGAACCGATCCCCCCCAT
*
3665888 GAAGGGGAACCGATTCCCCCCA
1 G-A-GGGAACCGATCCCCCCCA
3665910 CAGGGGAATC
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 18 0.51
22 1 0.03
23 16 0.46
ACGTcount: A:0.23, C:0.36, G:0.25, T:0.16
Consensus pattern (21 bp):
GAGGGAACCGATCCCCCCCAT
Found at i:3665916 original size:21 final size:21
Alignment explanation
Indices: 3665848--3665929 Score: 62
Period size: 21 Copynumber: 3.8 Consensus size: 21
3665838 TTGGTGCAGA
*
3665848 GGGAATCGA-TCCCCCC-CATG
1 GGGAACCGATTCCCCCCACA-G
*
3665868 AGGGAACCGATTCCCCCTTTGA-AG
1 -GGGAACCGATTCCCCC---CACAG
3665892 GGGAACCGATTCCCCCCACAG
1 GGGAACCGATTCCCCCCACAG
* *
3665913 GGGAATCGATACCCCCC
1 GGGAACCGATTCCCCCC
3665930 TGGGGTTCTG
Statistics
Matches: 50, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
20 1 0.02
21 25 0.50
22 6 0.12
23 16 0.32
24 1 0.02
25 1 0.02
ACGTcount: A:0.23, C:0.38, G:0.24, T:0.15
Consensus pattern (21 bp):
GGGAACCGATTCCCCCCACAG
Found at i:3670421 original size:17 final size:17
Alignment explanation
Indices: 3670399--3670431 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
3670389 AATTATATAT
*
3670399 TAATTATATTTAAAATA
1 TAATTATATTAAAAATA
3670416 TAATTATATTAAAAAT
1 TAATTATATTAAAAAT
3670432 TTATTTAGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
TAATTATATTAAAAATA
Found at i:3670601 original size:56 final size:56
Alignment explanation
Indices: 3670534--3670646 Score: 226
Period size: 56 Copynumber: 2.0 Consensus size: 56
3670524 TTATTTCTCA
3670534 TTTACTCTAAATTTTTAATGAAAACAAATTTATATTTTTAAATCTTGCATTAACTG
1 TTTACTCTAAATTTTTAATGAAAACAAATTTATATTTTTAAATCTTGCATTAACTG
3670590 TTTACTCTAAATTTTTAATGAAAACAAATTTATATTTTTAAATCTTGCATTAACTG
1 TTTACTCTAAATTTTTAATGAAAACAAATTTATATTTTTAAATCTTGCATTAACTG
3670646 T
1 T
3670647 AAATTAATAT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.37, C:0.11, G:0.05, T:0.47
Consensus pattern (56 bp):
TTTACTCTAAATTTTTAATGAAAACAAATTTATATTTTTAAATCTTGCATTAACTG
Found at i:3677364 original size:17 final size:18
Alignment explanation
Indices: 3677344--3677379 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
3677334 TCTAAATAAT
*
3677344 TTTTTAATATAATT-ATA
1 TTTTAAATATAATTCATA
3677361 TTTTAAATATAATTCATA
1 TTTTAAATATAATTCATA
3677379 T
1 T
3677380 ATAATTAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTTAAATATAATTCATA
Found at i:3679160 original size:18 final size:18
Alignment explanation
Indices: 3679113--3679165 Score: 70
Period size: 19 Copynumber: 2.8 Consensus size: 18
3679103 ATAGAAATTC
*
3679113 TTATTTTAATAAATAATTA
1 TTATTTTAAT-AATATTTA
*
3679132 ATATATTTAATAATATTTA
1 TTAT-TTTAATAATATTTA
3679151 TTATTTTAATAATAT
1 TTATTTTAATAATAT
3679166 GATATGATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
18 11 0.37
19 13 0.43
20 6 0.20
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
TTATTTTAATAATATTTA
Found at i:3679176 original size:21 final size:19
Alignment explanation
Indices: 3679114--3679178 Score: 55
Period size: 18 Copynumber: 3.3 Consensus size: 19
3679104 TAGAAATTCT
3679114 TATTTTAATAA-ATA-ATTAA
1 TATTTTAATAATATATA-T-A
*
3679133 TATATTTAATAATATTTAT-
1 TAT-TTTAATAATATATATA
3679152 TATTTTAATAATATGATATGA
1 TATTTTAATAATAT-ATAT-A
3679173 TATTTT
1 TATTTT
3679179 TATTTTAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
18 11 0.29
19 9 0.24
20 8 0.21
21 9 0.24
22 1 0.03
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (19 bp):
TATTTTAATAATATATATA
Found at i:3679207 original size:65 final size:63
Alignment explanation
Indices: 3679096--3679226 Score: 192
Period size: 65 Copynumber: 2.0 Consensus size: 63
3679086 TATAATACTT
*
3679096 TAATATTATAGAAATTCTTATTTTAATAAATAATTAATATATTTAATAATATTTATTATTTTAA
1 TAATATGATAGAAATTCTTATTTTAATAAATAATTAATATATTTAATAATATTT-TTATTTTAA
* * *
3679160 TAATATGATATGATATTTTTATTTTAATAATTAATTAATA-ATATTAATAATATTTTTATTTTAA
1 TAATATGATA-GAAATTCTTATTTTAATAAATAATTAATATAT-TTAATAATATTTTTATTTTAA
3679224 TAA
1 TAA
3679227 AATATACTAA
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
64 23 0.38
65 38 0.62
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.53
Consensus pattern (63 bp):
TAATATGATAGAAATTCTTATTTTAATAAATAATTAATATATTTAATAATATTTTTATTTTAA
Found at i:3679250 original size:65 final size:65
Alignment explanation
Indices: 3679114--3679250 Score: 172
Period size: 65 Copynumber: 2.1 Consensus size: 65
3679104 TAGAAATTCT
* * **
3679114 TATTTTAATAAATAATTAATATATTTAATAATATTTATTATTTTAATAATATGATATGATATTTT
1 TATTTTAATAAATAATTAATATATTTAATAATATTTATTATTTTAATAAAATGATATAATATTAA
* *
3679179 TATTTTAATAATTAATTAATA-ATATTAATAATATTT-TTATTTTAATAAAAT-ATACTAATCTT
1 TATTTTAATAAATAATTAATATAT-TTAATAATATTTATTATTTTAATAAAATGATA-TAATATT
3679241 AA
64 AA
3679243 TACTTTTA
1 TA-TTTTA
3679251 TTTATAAAAT
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
63 3 0.05
64 23 0.37
65 37 0.59
ACGTcount: A:0.44, C:0.02, G:0.01, T:0.53
Consensus pattern (65 bp):
TATTTTAATAAATAATTAATATATTTAATAATATTTATTATTTTAATAAAATGATATAATATTAA
Found at i:3679255 original size:37 final size:36
Alignment explanation
Indices: 3679156--3679244 Score: 108
Period size: 37 Copynumber: 2.4 Consensus size: 36
3679146 ATTTATTATT
* *
3679156 TTAATAATATGATATGATATTTTTATTTTAATAATTAA
1 TTAATAATATTA-ATAATATTTTTATTTTAATAA-TAA
3679194 TTAATAATATTAATAATATTTTTATTTTAATAA-AA
1 TTAATAATATTAATAATATTTTTATTTTAATAATAA
* *
3679229 TATACTAATCTTAATA
1 T-TAATAATATTAATA
3679245 CTTTTATTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
35 3 0.07
36 12 0.26
37 20 0.43
38 11 0.24
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (36 bp):
TTAATAATATTAATAATATTTTTATTTTAATAATAA
Found at i:3679293 original size:24 final size:23
Alignment explanation
Indices: 3679266--3679318 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 23
3679256 AAAATTGTAG
3679266 AAATAATATT-TTAATAATATTATT
1 AAATAATATTATT-ATAATATT-TT
*
3679290 AAATAA-ATTATTCTAATATTTT
1 AAATAATATTATTATAATATTTT
3679312 AAA-AATA
1 AAATAATA
3679319 ATAATATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
21 2 0.08
22 6 0.23
23 10 0.38
24 8 0.31
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (23 bp):
AAATAATATTATTATAATATTTT
Found at i:3679299 original size:12 final size:13
Alignment explanation
Indices: 3679266--3679301 Score: 51
Period size: 11 Copynumber: 3.0 Consensus size: 13
3679256 AAAATTGTAG
3679266 AAATAATATT-TT
1 AAATAATATTATT
3679278 -AATAATATTATT
1 AAATAATATTATT
3679290 AAATAA-ATTATT
1 AAATAATATTATT
3679302 CTAATATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 9 0.41
12 8 0.36
13 5 0.23
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
AAATAATATTATT
Found at i:3681704 original size:4 final size:4
Alignment explanation
Indices: 3681695--3681719 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
3681685 TTATTTCTAA
3681695 TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT T
3681720 TTATTCCTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:3681751 original size:16 final size:16
Alignment explanation
Indices: 3681732--3681765 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
3681722 ATTCCTTAAT
3681732 TTTTTTCTATTTTCTA
1 TTTTTTCTATTTTCTA
*
3681748 TTTTTTCTATTTTTTA
1 TTTTTTCTATTTTCTA
3681764 TT
1 TT
3681766 AGAAAAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.09, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTTTTCTATTTTCTA
Found at i:3682176 original size:188 final size:191
Alignment explanation
Indices: 3681824--3682249 Score: 451
Period size: 188 Copynumber: 2.3 Consensus size: 191
3681814 AAAAAATTTC
* * *
3681824 GTTACAACCTAAAATGTTTCATGAATTTCTCAATTGAAAAAAAAC-T-TAACGCGGATGATAACA
1 GTTACAACCTAAAATGTTACATGAATTTCTCAATTG-AATAAAACTTATAACGCAGATGATAACA
* * * * **
3681887 TTTTAAGTTTTAACTTGAAAACTTATTTGATCTACATGATTTATTATGATGAAAATAACATTTTT
65 TTTAAAGTTATAACCTAAAAACTTATTTGATCTACATGATTTATTATGAACAAAATAACATTTTT
* * * *
3681952 GGTTCCAACCTAAAATGCTATCCTATCTAATCTAAAA-GGT-TA-ATATTAGGTAAGAAAACT-A
130 AGTTCCAACATAAAATGCTATACTATCCAATCTAAAATGGTATATATATTA--TAA-AAAACTCA
* *
3682013 GTTACAACCTAAAATGTTACATGAATTTCTCAATTGAATAAAACTTATAAC-TAG-TGATTAC-T
1 GTTACAACCTAAAATGTTACATGAATTTCTCAATTGAATAAAACTTATAACGCAGATGATAACAT
* * *
3682075 TTGAAAGTTATAACCTAAAAAGTTATTTGATCTACATGATTTATTATGAACAATATAATATTTTT
66 TT-AAAGTTATAACCTAAAAACTTATTTGATCTACATGATTTATTATGAACAAAATAACATTTTT
* * * * * * **
3682140 AGTTTCAACATAAAATGTTATAAC-GTCCACTCTAAAATGTTATATATATTATAATAATTTCA
130 AGTTCCAACATAAAATGCTAT-ACTATCCAATCTAAAATGGTATATATATTATAAAAAACTCA
* * *
3682202 GTTACAA-TTGAGAATGTTACATGAGTTTCTCAATTGAATAAAACTTAT
1 GTTACAACCT-AAAATGTTACATGAATTTCTCAATTGAATAAAACTTAT
3682250 TACTCATTAA
Statistics
Matches: 199, Mismatches: 29, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
187 3 0.02
188 97 0.49
189 87 0.44
190 6 0.03
191 6 0.03
ACGTcount: A:0.40, C:0.12, G:0.11, T:0.37
Consensus pattern (191 bp):
GTTACAACCTAAAATGTTACATGAATTTCTCAATTGAATAAAACTTATAACGCAGATGATAACAT
TTAAAGTTATAACCTAAAAACTTATTTGATCTACATGATTTATTATGAACAAAATAACATTTTTA
GTTCCAACATAAAATGCTATACTATCCAATCTAAAATGGTATATATATTATAAAAAACTCA
Found at i:3684019 original size:15 final size:16
Alignment explanation
Indices: 3683999--3684037 Score: 62
Period size: 15 Copynumber: 2.5 Consensus size: 16
3683989 TCTAATCATA
3683999 CATTATTAATCATCT-
1 CATTATTAATCATCTG
*
3684014 CATTATTAATCATTTG
1 CATTATTAATCATCTG
3684030 CATTATTA
1 CATTATTA
3684038 TTCGAGGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 14 0.64
16 8 0.36
ACGTcount: A:0.33, C:0.15, G:0.03, T:0.49
Consensus pattern (16 bp):
CATTATTAATCATCTG
Found at i:3695621 original size:18 final size:18
Alignment explanation
Indices: 3695598--3695632 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
3695588 AGTCACTGTT
3695598 TATTTCTGATTTGGCTAC
1 TATTTCTGATTTGGCTAC
3695616 TATTTCTGATTTGGCTA
1 TATTTCTGATTTGGCTA
3695633 TGTTTTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.14, G:0.17, T:0.51
Consensus pattern (18 bp):
TATTTCTGATTTGGCTAC
Found at i:3696986 original size:93 final size:94
Alignment explanation
Indices: 3696843--3697019 Score: 277
Period size: 93 Copynumber: 1.9 Consensus size: 94
3696833 CAAGCAATGT
* *
3696843 GGTATTGATACCATGGTAAGGGTATCGATACGAGTAAACATCGAATCTAATTTTGGTATCGATAC
1 GGTATTGATACCATGGTAAGGGTATCGATACCAGTAAACATCGAAGCTAATTTTGGTATCGATAC
* *
3696908 AT-AGGGGGTATCGGTACCATAACATAGA
66 ATGAAGGGGTATCGATACCATAACATAGA
* *
3696936 GGTATTGATACCATGGTGAGGGTATCGATACCAGGT-TACATCGAAGCTAATTTTGGTATCGATA
1 GGTATTGATACCATGGTAAGGGTATCGATACCA-GTAAACATCGAAGCTAATTTTGGTATCGATA
3697000 CATGAAGGGGTATCGATACC
65 CATGAAGGGGTATCGATACC
3697020 CTAATAGGGT
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
93 60 0.79
94 16 0.21
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (94 bp):
GGTATTGATACCATGGTAAGGGTATCGATACCAGTAAACATCGAAGCTAATTTTGGTATCGATAC
ATGAAGGGGTATCGATACCATAACATAGA
Found at i:3699557 original size:94 final size:94
Alignment explanation
Indices: 3699389--3699560 Score: 242
Period size: 94 Copynumber: 1.8 Consensus size: 94
3699379 CAAGAAATGT
*
3699389 GGTATCGATACCATGGTAAGGGTAATGATACCAGTAAACATCGAATCTAATTTTTGGTATCGATA
1 GGTATCGATACCATGGTAAGGGTAATGATACCAGTAAACATCGAAGCTAATTTTTGGTATCGATA
*
3699454 CCGAGGGGGTATCGGTACCATAGCATACA
66 CCGAAGGGGTATCGGTACCATAGCATACA
* * *
3699483 GGTATCGATACCATGGTGAGGGT-ATCGATACCAGGT-TACATCGAAGCTAA-TTTTGGTATCGT
1 GGTATCGATACCATGGTAAGGGTAAT-GATACCA-GTAAACATCGAAGCTAATTTTTGGTATCGA
*
3699545 TACATGAAGGGGTATC
64 TAC-CGAAGGGGTATC
3699561 AATACCCTAA
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
93 16 0.23
94 51 0.74
95 2 0.03
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (94 bp):
GGTATCGATACCATGGTAAGGGTAATGATACCAGTAAACATCGAAGCTAATTTTTGGTATCGATA
CCGAAGGGGTATCGGTACCATAGCATACA
Found at i:3700106 original size:78 final size:79
Alignment explanation
Indices: 3699969--3700154 Score: 284
Period size: 78 Copynumber: 2.4 Consensus size: 79
3699959 AAACTAATGA
* * * *
3699969 ATAAAAGAATAATGCATATGGGTGCATTAGTGGCATAAAAGGATGCCTTCGCTGATATGTATATA
1 ATAAAAGAATAATGCATATGGGTGCATTAGCGACATAAAAGAATGCCTTAGCTGATATGTATATA
3700034 GGTACATTATCGGC
66 GGTACATTATCGGC
* * * *
3700048 ATAAAAG-ATAATGTATATGGGTGCATTAGCGATATGAAAGAATGCCTTAGCTGATATGTATATG
1 ATAAAAGAATAATGCATATGGGTGCATTAGCGACATAAAAGAATGCCTTAGCTGATATGTATATA
3700112 GGTACATTATCGGC
66 GGTACATTATCGGC
*
3700126 ATAACAGAATAATGCATATGGGTGCATTA
1 ATAAAAGAATAATGCATATGGGTGCATTA
3700155 TTGGCATGAA
Statistics
Matches: 96, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
78 69 0.72
79 27 0.28
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.30
Consensus pattern (79 bp):
ATAAAAGAATAATGCATATGGGTGCATTAGCGACATAAAAGAATGCCTTAGCTGATATGTATATA
GGTACATTATCGGC
Found at i:3700289 original size:90 final size:90
Alignment explanation
Indices: 3700136--3700458 Score: 364
Period size: 90 Copynumber: 3.6 Consensus size: 90
3700126 ATAACAGAAT
*** * * * * *
3700136 AATGCATATGGGTGCATTATTGGCATGAAAGGATGCCAGAGTTGAAATGTATATGGGTGCATTAT
1 AATGCATATGGGTGCATTATCAACATAAAAAGATGCTAGAGTTAAAATGCATATGGGTGCATTAT
*
3700201 CAACAGAAAAGTATATTAGAGTTGA
66 CAACATAAAAGTATATTAGAGTTGA
* *
3700226 AATGCATATGGGTGCATTATCAACATAAAAATATGCTAGAGTTAAAATGCATATTGGTGCATTAT
1 AATGCATATGGGTGCATTATCAACATAAAAAGATGCTAGAGTTAAAATGCATATGGGTGCATTAT
* **
3700291 CAACATAAAAATATGCTAGAGTTGA
66 CAACATAAAAGTATATTAGAGTTGA
* * * ** * * * *
3700316 AATGTATATCGGTGCATTATCAACA-GAAAAGTATATTATG-GTTGAGATGTATATGGGTACATT
1 AATGCATATGGGTGCATTATCAACATAAAAAG-ATGCTA-GAGTTAAAATGCATATGGGTGCATT
*
3700379 ATCAACATAAAAGTATATTATAGTTGA
64 ATCAACATAAAAGTATATTAGAGTTGA
* *
3700406 AATGCATATGGGTGCATTATCAACA-GAAAAGATGTTAGAGTTTAAAATGCATA
1 AATGCATATGGGTGCATTATCAACATAAAAAGATGCTAGAG-TTAAAATGCATA
3700459 ATGATGTATT
Statistics
Matches: 194, Mismatches: 35, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
88 1 0.01
89 10 0.05
90 182 0.94
91 1 0.01
ACGTcount: A:0.39, C:0.09, G:0.21, T:0.31
Consensus pattern (90 bp):
AATGCATATGGGTGCATTATCAACATAAAAAGATGCTAGAGTTAAAATGCATATGGGTGCATTAT
CAACATAAAAGTATATTAGAGTTGA
Found at i:3700454 original size:135 final size:135
Alignment explanation
Indices: 3700136--3700447 Score: 439
Period size: 135 Copynumber: 2.3 Consensus size: 135
3700126 ATAACAGAAT
*** * * *
3700136 AATGCATATGGGTGCATTATTGGCATGAAAGGATGCCAGAGTTGAAATGTATATGGGTGCATTAT
1 AATGCATATGGGTGCATTATCAACATGAAAAGATGCTAGAGTTGAAATGTATATCGGTGCATTAT
* *
3700201 CAACAGAAAAGTATATTAGAGTTGAAATGCATATGGGTGCATTATCAACATAAAAATATGCTAGA
66 CAACAGAAAAGTATATTAGAGTTGAAATGCATATGGGTACATTATCAACATAAAAATATACTAGA
3700266 GTTAA
131 GTTAA
* * *
3700271 AATGCATATTGGTGCATTATCAACATAAAAATATGCTAGAGTTGAAATGTATATCGGTGCATTAT
1 AATGCATATGGGTGCATTATCAACATGAAAAGATGCTAGAGTTGAAATGTATATCGGTGCATTAT
* * * * *
3700336 CAACAGAAAAGTATATTATG-GTTGAGATGTATATGGGTACATTATCAACATAAAAGTATATTAT
66 CAACAGAAAAGTATATTA-GAGTTGAAATGCATATGGGTACATTATCAACATAAAAATATACTAG
*
3700400 AGTTGA
130 AGTTAA
*
3700406 AATGCATATGGGTGCATTATCAACA-GAAAAGATGTTAGAGTT
1 AATGCATATGGGTGCATTATCAACATGAAAAGATGCTAGAGTT
3700448 TAAAATGCAT
Statistics
Matches: 155, Mismatches: 21, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
134 14 0.09
135 140 0.90
136 1 0.01
ACGTcount: A:0.38, C:0.09, G:0.21, T:0.31
Consensus pattern (135 bp):
AATGCATATGGGTGCATTATCAACATGAAAAGATGCTAGAGTTGAAATGTATATCGGTGCATTAT
CAACAGAAAAGTATATTAGAGTTGAAATGCATATGGGTACATTATCAACATAAAAATATACTAGA
GTTAA
Found at i:3700470 original size:45 final size:45
Alignment explanation
Indices: 3700173--3700458 Score: 360
Period size: 45 Copynumber: 6.4 Consensus size: 45
3700163 AAAGGATGCC
*
3700173 AGAGTTGAAATGTATATGGGTGCATTATCAACAGAAAAGTATATT
1 AGAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAGTATATT
* * **
3700218 AGAGTTGAAATGCATATGGGTGCATTATCAACATAAAAATATGCT
1 AGAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAGTATATT
* * * * **
3700263 AGAGTTAAAATGCATATTGGTGCATTATCAACATAAAAATATGCT
1 AGAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAGTATATT
* *
3700308 AGAGTTGAAATGTATATCGGTGCATTATCAACAGAAAAGTATATT
1 AGAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAGTATATT
* * * *
3700353 ATG-GTTGAGATGTATATGGGTACATTATCAACATAAAAGTATATT
1 A-GAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAGTATATT
* *
3700398 ATAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAG-ATGTT
1 AGAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAGTATATT
*
3700442 AGAGTTTAAAATGCATA
1 AGAG-TTGAAATGCATA
3700459 ATGATGTATT
Statistics
Matches: 212, Mismatches: 26, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
44 7 0.03
45 204 0.96
46 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.20, T:0.31
Consensus pattern (45 bp):
AGAGTTGAAATGCATATGGGTGCATTATCAACAGAAAAGTATATT
Found at i:3701020 original size:20 final size:20
Alignment explanation
Indices: 3700995--3701047 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
3700985 TTAATTTATT
3700995 GTGATATGAAGGGTACATAA
1 GTGATATGAAGGGTACATAA
*
3701015 GTGATATGAAGGGTGCATAA
1 GTGATATGAAGGGTACATAA
3701035 GTGATATGAAGGG
1 GTGATATGAAGGG
3701048 ATGATATATA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.36, C:0.04, G:0.36, T:0.25
Consensus pattern (20 bp):
GTGATATGAAGGGTACATAA
Found at i:3701189 original size:44 final size:46
Alignment explanation
Indices: 3701132--3701224 Score: 120
Period size: 44 Copynumber: 2.1 Consensus size: 46
3701122 CACCCAGAAC
* * *
3701132 ATAAAAGGCATGAAAGGATGCCATAAAT-GAAAT-GTATAATAGTGT
1 ATAAAAGGCATGAAAGAATACCAT-AATGGAAATGGTATAAGAGTGT
*
3701177 ATAAAA-GCATGAAAGAATACCATAATGGAAATGGTATAAGGGTGT
1 ATAAAAGGCATGAAAGAATACCATAATGGAAATGGTATAAGAGTGT
3701222 ATA
1 ATA
3701225 TTAAACACGT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
43 3 0.07
44 20 0.48
45 19 0.45
ACGTcount: A:0.47, C:0.06, G:0.23, T:0.24
Consensus pattern (46 bp):
ATAAAAGGCATGAAAGAATACCATAATGGAAATGGTATAAGAGTGT
Found at i:3703012 original size:2 final size:2
Alignment explanation
Indices: 3703005--3703033 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
3702995 GATGTCATAA
3703005 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
3703034 GCTTTTATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:3705304 original size:21 final size:21
Alignment explanation
Indices: 3705238--3705308 Score: 69
Period size: 22 Copynumber: 3.4 Consensus size: 21
3705228 CTAATTTTGT
3705238 TATCGATA-CATGAAG--GGGG
1 TATCGATACCAT-AAGTAGGGG
* *
3705257 TATTGATACCCTAA-TAGGGTAG
1 TATCGATACCATAAGTAGGG--G
3705279 TATCGATACCATAAGTAGGGG
1 TATCGATACCATAAGTAGGGG
3705300 TATCGATAC
1 TATCGATAC
3705309 AGACGACCAT
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
19 9 0.21
20 5 0.12
21 10 0.24
22 13 0.31
23 5 0.12
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27
Consensus pattern (21 bp):
TATCGATACCATAAGTAGGGG
Found at i:3705835 original size:78 final size:79
Alignment explanation
Indices: 3705668--3705871 Score: 338
Period size: 78 Copynumber: 2.6 Consensus size: 79
3705658 AAACTAATGA
**
3705668 ATAAAAGAATAATGCATATGGGTGCATTAGTGGCACAAAAGGATGCCTTAGCTGATATGTATATG
1 ATAAAAGAATAATGCATATGGGTGCATTAGTGGCATGAAAGGATGCCTTAGCTGATATGTATATG
3705733 GGTACATTATCAGC
66 GGTACATTATCAGC
*
3705747 ATAAAAGAATAATGCATATGGGTGCATTAGTGGCATGAAAGGAT-CCTTAGCTGATATTTATATG
1 ATAAAAGAATAATGCATATGGGTGCATTAGTGGCATGAAAGGATGCCTTAGCTGATATGTATATG
*
3705811 GGTACATTATCGGC
66 GGTACATTATCAGC
* * *
3705825 ATAATAGAATAATGCATATGGGTGCATTATTTGCATGAAAGGATGCC
1 ATAAAAGAATAATGCATATGGGTGCATTAGTGGCATGAAAGGATGCC
3705872 AGAGTTGAAA
Statistics
Matches: 117, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
78 73 0.62
79 44 0.38
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (79 bp):
ATAAAAGAATAATGCATATGGGTGCATTAGTGGCATGAAAGGATGCCTTAGCTGATATGTATATG
GGTACATTATCAGC
Found at i:3707078 original size:41 final size:41
Alignment explanation
Indices: 3707000--3707080 Score: 101
Period size: 41 Copynumber: 2.0 Consensus size: 41
3706990 TATTACTTAG
* * * *
3707000 TAAGCCCTTCGGGTCATCTATAAGTCTTTCGAGCAAGATGA
1 TAAGCCCTTCGGGCCATCCATAAGACCTTCGAGCAAGATGA
*
3707041 TAAGTCCTTCGGGCCATCCATAAGACCTTCG-GACAAGATG
1 TAAGCCCTTCGGGCCATCCATAAGACCTTCGAG-CAAGATG
3707081 TTTTCACATG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
40 1 0.03
41 33 0.97
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (41 bp):
TAAGCCCTTCGGGCCATCCATAAGACCTTCGAGCAAGATGA
Found at i:3708124 original size:135 final size:135
Alignment explanation
Indices: 3707843--3708318 Score: 650
Period size: 135 Copynumber: 3.5 Consensus size: 135
3707833 GCGAATCGAA
* * *
3707843 CTCGATTCAATCTTCCTTGAAGAACAATAGAATGAATCAACATTTCCAGATCTGATTTTCCCCGA
1 CTCGATTCAATCTTCCCTGAAGAACAGTAGAATGAATCAACATTTCCAGATCTGATTTTCCCTGA
* * * * * * *
3707908 GGAAGCGGCGGAATAGAT-CAT-ATTTTTCTAGATTTGATCCTCCCTGAGGAATAGTGGAACAAG
66 AGAAGCAGCGGAACAGATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAATAGTGGAACAAG
3707971 TCTGC
131 TCTGC
* * * * *
3707976 CTCAATTCAATCTTCCCTAAAGAATAGTAGAATGAATCAATATTTCCAGATCTTATTTTCCCTGA
1 CTCGATTCAATCTTCCCTGAAGAACAGTAGAATGAATCAACATTTCCAGATCTGATTTTCCCTGA
* * * * *
3708041 GGAAGCAACGGAACATATCCCTCTTTTTTCCATATTTGATCTTCCCTGAGGAACAGTGGAACAAG
66 AGAAGCAGCGGAACAGATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAATAGTGGAACAAG
3708106 TCTGC
131 TCTGC
* * ***
3708111 CTCGATTCAATCTTCCCTGAAGAATAGTGGAATGAATCAACATTTCCAGATCTGATTTTTTTTGA
1 CTCGATTCAATCTTCCCTGAAGAACAGTAGAATGAATCAACATTTCCAGATCTGATTTTCCCTGA
* ** *
3708176 AGAAGCAGCGGAACAGATCCCTCTTTTTTCCAGATTTGTTCTTCATTGAGAAATAGTGGAACAAG
66 AGAAGCAGCGGAACAGATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAATAGTGGAACAAG
3708241 TCTGC
131 TCTGC
* * *
3708246 CTCGATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACGTTTCTAGATCTGATTTTCCCTGA
1 CTCGATTCAATCTTCCCTGAAGAACAGTAGAATGAATCAACATTTCCAGATCTGATTTTCCCTGA
3708311 AGAAGCAG
66 AGAAGCAG
3708319 TACAACATAT
Statistics
Matches: 300, Mismatches: 41, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
133 71 0.24
134 2 0.01
135 227 0.76
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (135 bp):
CTCGATTCAATCTTCCCTGAAGAACAGTAGAATGAATCAACATTTCCAGATCTGATTTTCCCTGA
AGAAGCAGCGGAACAGATCCCTCTTTTTTCCAGATTTGATCTTCCCTGAGGAATAGTGGAACAAG
TCTGC
Found at i:3708534 original size:3 final size:3
Alignment explanation
Indices: 3708526--3708625 Score: 191
Period size: 3 Copynumber: 33.3 Consensus size: 3
3708516 TCGGAGTCCG
3708526 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
3708574 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTG TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
3708622 TTA T
1 TTA T
3708626 ATTTTGTTTT
Statistics
Matches: 95, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
3 95 1.00
ACGTcount: A:0.32, C:0.00, G:0.01, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:3709937 original size:27 final size:25
Alignment explanation
Indices: 3709871--3709954 Score: 71
Period size: 27 Copynumber: 3.2 Consensus size: 25
3709861 CTGATTTTTG
* * *
3709871 TTTTGTTTTGTTTTAGTCAATTGATGTA
1 TTTTGTTTTATTTT--T-AATTTATGAA
3709899 TTTTGTTTTATTATTT-ATTTATGAA
1 TTTTGTTTTATT-TTTAATTTATGAA
*
3709924 TTTTGTGTTGTATTTTTAATTTATGCA
1 TTTTGT-TT-TATTTTTAATTTATGAA
3709951 TTTT
1 TTTT
3709955 AGTCACTATT
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
25 13 0.27
26 5 0.10
27 17 0.35
28 11 0.23
29 2 0.04
ACGTcount: A:0.19, C:0.02, G:0.13, T:0.65
Consensus pattern (25 bp):
TTTTGTTTTATTTTTAATTTATGAA
Found at i:3714799 original size:31 final size:31
Alignment explanation
Indices: 3714727--3714895 Score: 281
Period size: 31 Copynumber: 5.5 Consensus size: 31
3714717 TAAATTTTTC
*
3714727 GTTCGTGTTCGTTCATTAAGAAATTT---TT
1 GTTCGTGTTCGTTTATTAAGAAATTTAGCTT
3714755 CGTTCGTGTTCGTTTATTAAGAAATTTAGCTT
1 -GTTCGTGTTCGTTTATTAAGAAATTTAGCTT
*
3714787 GTTCATGTTCGTTTATTAAGAAATTTAGCTT
1 GTTCGTGTTCGTTTATTAAGAAATTTAGCTT
*
3714818 GTTCGTGTTCGTTTATTAAGAAATTTAGTTT
1 GTTCGTGTTCGTTTATTAAGAAATTTAGCTT
3714849 GTTCGTGTTCGTTTATTAAGAAATTTAGCTT
1 GTTCGTGTTCGTTTATTAAGAAATTTAGCTT
3714880 GTTCGTGTTCGTTTAT
1 GTTCGTGTTCGTTTAT
3714896 GTTCGTTTGT
Statistics
Matches: 132, Mismatches: 5, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
29 25 0.19
31 105 0.80
32 2 0.02
ACGTcount: A:0.21, C:0.10, G:0.19, T:0.50
Consensus pattern (31 bp):
GTTCGTGTTCGTTTATTAAGAAATTTAGCTT
Found at i:3714939 original size:14 final size:14
Alignment explanation
Indices: 3714920--3714975 Score: 67
Period size: 14 Copynumber: 4.0 Consensus size: 14
3714910 ATGATAAACA
*
3714920 AACACAAATGAACG
1 AACACAAACGAACG
3714934 AACACAAACGAACG
1 AACACAAACGAACG
* *
3714948 AACATAAACGAATG
1 AACACAAACGAACG
* *
3714962 AAGATAAACGAACG
1 AACACAAACGAACG
3714976 TAAACGAACA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 37 1.00
ACGTcount: A:0.57, C:0.20, G:0.16, T:0.07
Consensus pattern (14 bp):
AACACAAACGAACG
Found at i:3715197 original size:24 final size:24
Alignment explanation
Indices: 3715164--3715212 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
3715154 TGGGTCAAAT
3715164 ATAAACGAACGAACATAAACGAAC
1 ATAAACGAACGAACATAAACGAAC
* **
3715188 ATAAATGAACGATTATAAACGAAC
1 ATAAACGAACGAACATAAACGAAC
3715212 A
1 A
3715213 GGTCATCGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.57, C:0.16, G:0.12, T:0.14
Consensus pattern (24 bp):
ATAAACGAACGAACATAAACGAAC
Found at i:3715301 original size:40 final size:41
Alignment explanation
Indices: 3715255--3715334 Score: 108
Period size: 40 Copynumber: 1.9 Consensus size: 41
3715245 AACGAGCTCT
* *
3715255 TTGTTCATGTTCGTTCATTTAAT-TAAACGAACATAAAATC
1 TTGTTCATATTCATTCATTTAATATAAACGAACATAAAATC
*
3715295 TTGTTCATATTCATTCGTTTAATAAATAAACGAACATAAA
1 TTGTTCATATTCATTCATTTAAT--ATAAACGAACATAAA
3715335 CGAACTTTCC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
40 20 0.59
43 14 0.41
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.39
Consensus pattern (41 bp):
TTGTTCATATTCATTCATTTAATATAAACGAACATAAAATC
Found at i:3718293 original size:22 final size:21
Alignment explanation
Indices: 3718265--3718317 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 21
3718255 TTGTTGTTGT
3718265 TTTTTTTATTAAAAAGAATTCC
1 TTTTTTT-TTAAAAAGAATTCC
*
3718287 TTTTTTTTAAAAAAAGAATTCC
1 TTTTTTTT-TAAAAAGAATTCC
3718309 TTTTTTTTT
1 TTTTTTTTT
3718318 TATAAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 1 0.04
22 27 0.96
ACGTcount: A:0.32, C:0.08, G:0.04, T:0.57
Consensus pattern (21 bp):
TTTTTTTTTAAAAAGAATTCC
Found at i:3724395 original size:21 final size:21
Alignment explanation
Indices: 3724371--3724410 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
3724361 TTTATTTTAT
3724371 AACTTTATTTCAATTATCGTA
1 AACTTTATTTCAATTATCGTA
*
3724392 AACTTTGTTTCAATTATCG
1 AACTTTATTTCAATTATCG
3724411 AACTTGAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.15, G:0.07, T:0.47
Consensus pattern (21 bp):
AACTTTATTTCAATTATCGTA
Found at i:3724458 original size:33 final size:33
Alignment explanation
Indices: 3724405--3724503 Score: 164
Period size: 33 Copynumber: 3.0 Consensus size: 33
3724395 TTTGTTTCAA
3724405 TTATCGAACTT-GAAGTTTTTAAGTATTTGAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
3724437 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
* * *
3724470 TTATCAAACTTGGAAGTATTTAAGTATTTCAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
3724503 T
1 T
3724504 ATGTTGAGTT
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
32 11 0.17
33 52 0.83
ACGTcount: A:0.32, C:0.07, G:0.15, T:0.45
Consensus pattern (33 bp):
TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
Found at i:3724532 original size:13 final size:13
Alignment explanation
Indices: 3724489--3724543 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
3724479 TTGGAAGTAT
3724489 TTAAGTATTTCAA
1 TTAAGTATTTCAA
* *
3724502 TTATGTTGAGTT-AA
1 TTAAG-T-ATTTCAA
3724516 TTAAGTATTTCAA
1 TTAAGTATTTCAA
*
3724529 TTAAGTATTTGAA
1 TTAAGTATTTCAA
3724542 TT
1 TT
3724544 TATCGAACTT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
12 3 0.09
13 21 0.62
14 7 0.21
15 3 0.09
ACGTcount: A:0.35, C:0.04, G:0.13, T:0.49
Consensus pattern (13 bp):
TTAAGTATTTCAA
Found at i:3724765 original size:21 final size:21
Alignment explanation
Indices: 3724739--3724795 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
3724729 TGGAGCGTGG
*
3724739 GGGAATCGGTACCCTCTCATA
1 GGGAATCGGTTCCCTCTCATA
*
3724760 GGGAATCGGTTTCCTCTCATA
1 GGGAATCGGTTCCCTCTCATA
3724781 GGGAATCGGTTCCCT
1 GGGAATCGGTTCCCT
3724796 AAGTGTAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.19, C:0.26, G:0.26, T:0.28
Consensus pattern (21 bp):
GGGAATCGGTTCCCTCTCATA
Found at i:3725000 original size:17 final size:18
Alignment explanation
Indices: 3724980--3725013 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
3724970 GTTTTTTTAT
3724980 AACC-GGTTTTTTAAAAA
1 AACCAGGTTTTTTAAAAA
*
3724997 AACCAGTTTTTTTAAAA
1 AACCAGGTTTTTTAAAA
3725014 CCGAAACCGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.38
Consensus pattern (18 bp):
AACCAGGTTTTTTAAAAA
Found at i:3725132 original size:15 final size:17
Alignment explanation
Indices: 3725106--3725137 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
3725096 TTCTATGGGA
3725106 AAAAACCGGAT-CGGAT
1 AAAAACCGGATCCGGAT
3725122 AAAAACC-GATCCGGAT
1 AAAAACCGGATCCGGAT
3725138 CGGATTGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 3 0.20
16 12 0.80
ACGTcount: A:0.44, C:0.22, G:0.22, T:0.12
Consensus pattern (17 bp):
AAAAACCGGATCCGGAT
Found at i:3725782 original size:20 final size:19
Alignment explanation
Indices: 3725731--3725782 Score: 52
Period size: 19 Copynumber: 2.6 Consensus size: 19
3725721 ATCCCTAAAC
*
3725731 TTCTAAATATTATAATTTCA
1 TTCTAAAT-TTATAATATCA
*
3725751 TCCCTAAA-TTATAACTATCA
1 T-TCTAAATTTATAA-TATCA
3725771 TTCTAAATTTAT
1 TTCTAAATTTAT
3725783 CCTTAAACTT
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
19 11 0.42
20 10 0.38
21 5 0.19
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.46
Consensus pattern (19 bp):
TTCTAAATTTATAATATCA
Found at i:3725811 original size:60 final size:59
Alignment explanation
Indices: 3725714--3725884 Score: 182
Period size: 60 Copynumber: 2.8 Consensus size: 59
3725704 ATGATATTTT
* * * *
3725714 TAAATTGATCCCTAAACTTCTAAATATTATAATTTCATCCCTAAATTATAAC-TATCATTC
1 TAAATTGATCCCTAAACTTTTTAACATTTTAATTTCATCCC-AAATTATAACAT-TCATTC
* * * * *
3725774 TAAATTTATCCTTAAACTTTTTAACATTTTAGTTTCATTCCCAAACTATATCATTCATTC
1 TAAATTGATCCCTAAACTTTTTAACATTTTAATTTCA-TCCCAAATTATAACATTCATTC
* * *
3725834 TAAATTGGTCCCCAAACTTTTTTCAACATTTCAATTTCATCCCAAATTATA
1 TAAATTGATCCCTAAAC-TTTTT-AACATTTTAATTTCATCCCAAATTATA
3725885 TGTATACACT
Statistics
Matches: 91, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
60 57 0.63
61 21 0.23
62 13 0.14
ACGTcount: A:0.35, C:0.21, G:0.02, T:0.42
Consensus pattern (59 bp):
TAAATTGATCCCTAAACTTTTTAACATTTTAATTTCATCCCAAATTATAACATTCATTC
Found at i:3728163 original size:2 final size:2
Alignment explanation
Indices: 3728156--3728257 Score: 161
Period size: 2 Copynumber: 51.0 Consensus size: 2
3728146 ATCATGTACA
3728156 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
3728198 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT CT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
3728239 AT AT GT GAT AT AC AT AT AT
1 AT AT AT -AT AT AT AT AT AT
3728258 CATACATAGT
Statistics
Matches: 93, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
1 1 0.01
2 91 0.98
3 1 0.01
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:3730734 original size:60 final size:59
Alignment explanation
Indices: 3730605--3730735 Score: 140
Period size: 60 Copynumber: 2.2 Consensus size: 59
3730595 AATTAATCTT
* * * * * *
3730605 TAAACTTTTAAATATTTTAATTTCATCCTTAAATTATGACTCTCATTCTAAATTAGTCCT
1 TAAACTTTT-GATATTCTAATTCCATCCCTAAACTATGACTCTCATTCTAAATTAGTCCC
* *
3730665 TCAAA-TTTTGATCATTCTAATTCCATCCCTAAACTATGA-TCCTCTTTGTAAATTAGTCCC
1 T-AAACTTTTGAT-ATTCTAATTCCATCCCTAAACTATGACT-CTCATTCTAAATTAGTCCC
3730725 TAAACTTTTGA
1 TAAACTTTTGA
3730736 ATGTTCCAAT
Statistics
Matches: 59, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
59 6 0.10
60 50 0.85
61 3 0.05
ACGTcount: A:0.31, C:0.20, G:0.05, T:0.44
Consensus pattern (59 bp):
TAAACTTTTGATATTCTAATTCCATCCCTAAACTATGACTCTCATTCTAAATTAGTCCC
Found at i:3730985 original size:60 final size:60
Alignment explanation
Indices: 3730875--3731001 Score: 168
Period size: 60 Copynumber: 2.1 Consensus size: 60
3730865 GTACATACAT
* ** *
3730875 ATAGTTTGGGATGAAATTGGAATGTTCAAAAAGTTTGGGGACCAATTTAGAAT-GAAATTC
1 ATAGTTTGGGATGAAATTGAAATGTTCAAAAAGTTTAAGGACCAAATTAGAATAG-AATTC
* *
3730935 ATAGTTTGGGGATGAAATTGAAATGTTC-AAAAGTTTAAGGACTAAATTAGAATAGTATTC
1 ATAGTTT-GGGATGAAATTGAAATGTTCAAAAAGTTTAAGGACCAAATTAGAATAGAATTC
3730995 ATAGTTT
1 ATAGTTT
3731002 AGGCATTAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
60 39 0.66
61 20 0.34
ACGTcount: A:0.38, C:0.06, G:0.23, T:0.34
Consensus pattern (60 bp):
ATAGTTTGGGATGAAATTGAAATGTTCAAAAAGTTTAAGGACCAAATTAGAATAGAATTC
Found at i:3736228 original size:2 final size:2
Alignment explanation
Indices: 3736221--3736246 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
3736211 TAAAAGCCAA
3736221 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
3736247 TCCCGAGAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3743458 original size:14 final size:11
Alignment explanation
Indices: 3743425--3743457 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
3743415 AAAGTAGTAT
3743425 CTCAAAGAAGA
1 CTCAAAGAAGA
3743436 CTCAAAGAAGA
1 CTCAAAGAAGA
3743447 CTCAAAGAAGA
1 CTCAAAGAAGA
3743458 ACCAATGCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.55, C:0.18, G:0.18, T:0.09
Consensus pattern (11 bp):
CTCAAAGAAGA
Found at i:3745226 original size:23 final size:22
Alignment explanation
Indices: 3745185--3745241 Score: 87
Period size: 23 Copynumber: 2.5 Consensus size: 22
3745175 TAGTGCAGAA
* *
3745185 GGAATTGATACCCCCTTGAAGG
1 GGAACTGATTCCCCCTTGAAGG
3745207 GGAACTGATTCCCCCTTTGAAGG
1 GGAACTGATTCCCCC-TTGAAGG
3745230 GGAACTGATTCC
1 GGAACTGATTCC
3745242 ACCTGTAGGA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
22 13 0.41
23 19 0.59
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.25
Consensus pattern (22 bp):
GGAACTGATTCCCCCTTGAAGG
Found at i:3746852 original size:18 final size:18
Alignment explanation
Indices: 3746831--3746871 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
3746821 AGAACAACAC
3746831 GAGGAACAAGCACGAG-CA
1 GAGGAACAAGCAC-AGCCA
3746849 GAGGAACAAGCACAGCCA
1 GAGGAACAAGCACAGCCA
3746867 GAGGA
1 GAGGA
3746872 TCAAATGCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 2 0.09
18 20 0.91
ACGTcount: A:0.44, C:0.22, G:0.34, T:0.00
Consensus pattern (18 bp):
GAGGAACAAGCACAGCCA
Found at i:3751873 original size:47 final size:47
Alignment explanation
Indices: 3751804--3751989 Score: 327
Period size: 47 Copynumber: 4.0 Consensus size: 47
3751794 TGCATATTTT
* *
3751804 TTAGGAGTATCCACAAGCATGAATCAAACAAATTGTAAGCCCAGACA
1 TTAGGAATATCCACAAACATGAATCAAACAAATTGTAAGCCCAGACA
3751851 TTAGGAATATCCACAAACATGAATCAAACAAATTGTAAGCCCAGACA
1 TTAGGAATATCCACAAACATGAATCAAACAAATTGTAAGCCCAGACA
*
3751898 TTAGGAATATCCACAAGCATGAATCAAACAAATTGTAAGCCCAGACA
1 TTAGGAATATCCACAAACATGAATCAAACAAATTGTAAGCCCAGACA
* *
3751945 TTAGGAGTGTCCACAAACATGAATCAAACAAATTGTAAGCCCAGA
1 TTAGGAATATCCACAAACATGAATCAAACAAATTGTAAGCCCAGA
3751990 TATGGAGAGG
Statistics
Matches: 133, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.44, C:0.21, G:0.16, T:0.19
Consensus pattern (47 bp):
TTAGGAATATCCACAAACATGAATCAAACAAATTGTAAGCCCAGACA
Found at i:3767115 original size:20 final size:20
Alignment explanation
Indices: 3767090--3767387 Score: 262
Period size: 20 Copynumber: 15.1 Consensus size: 20
3767080 TAATTGAAAA
*
3767090 TCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATTTTCCAGT
3767110 TCGCGTTGCGATTTTCCAGT
1 TCGCGTTGCGATTTTCCAGT
* *
3767130 TCGCGTTGCGATTTTTCATT
1 TCGCGTTGCGATTTTCCAGT
3767150 TCGCGTTGCGATTTTCCAGT
1 TCGCGTTGCGATTTTCCAGT
3767170 TCGCGTTGCGATTTTCCAGT
1 TCGCGTTGCGATTTTCCAGT
* *
3767190 TCGCGTTGCGATAGTCTACAGT
1 TCGCGTTGCGAT--TTTCCAGT
*
3767212 T-GTCGTTGCGATTTTCCAAAT
1 TCG-CGTTGCGATTTTCC-AGT
* *
3767233 T--CGTTGCGATAGTCTACAGT
1 TCGCGTTGCGAT--TTTCCAGT
*
3767253 T-GTCGTTGCGATTTTCCAAAT
1 TCG-CGTTGCGATTTTCC-AGT
***
3767274 T--CGTTGCGA-AAACC-G-
1 TCGCGTTGCGATTTTCCAGT
*
3767289 T---GTTGCGATTTTCCATT
1 TCGCGTTGCGATTTTCCAGT
3767306 TCGCGTTGCGATTTTCCAGT
1 TCGCGTTGCGATTTTCCAGT
* **
3767326 TCGCGTTGCGATAGTTT-AAAA
1 TCGCGTTGCGAT--TTTCCAGT
*
3767347 TCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATTTTCCAGT
3767367 TCGCGTTGCGATTTTCCAGT
1 TCGCGTTGCGATTTTCCAGT
3767387 T
1 T
3767388 GCGATAATCT
Statistics
Matches: 228, Mismatches: 32, Indels: 36
0.77 0.11 0.12
Matches are distributed among these distances:
14 7 0.03
15 3 0.01
17 1 0.00
18 2 0.01
19 20 0.09
20 144 0.63
21 23 0.10
22 28 0.12
ACGTcount: A:0.15, C:0.22, G:0.23, T:0.40
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCCAGT
Found at i:3767150 original size:40 final size:40
Alignment explanation
Indices: 3767090--3767384 Score: 274
Period size: 41 Copynumber: 7.5 Consensus size: 40
3767080 TAATTGAAAA
*
3767090 TCGCGTTGCGATTTTCCATTTCGCGTTGCGATTTTCCAGT
1 TCGCGTTGCGATTTTCCAATTCGCGTTGCGATTTTCCAGT
* *
3767130 TCGCGTTGCGATTTTTCATTTCGCGTTGCGATTTTCCAGT
1 TCGCGTTGCGATTTTCCAATTCGCGTTGCGATTTTCCAGT
* * *
3767170 TCGCGTTGCGATTTTCCAGTTCGCGTTGCGATAGTCTACAGT
1 TCGCGTTGCGATTTTCCAATTCGCGTTGCGAT--TTTCCAGT
* *
3767212 T-GTCGTTGCGATTTTCCAAATT--CGTTGCGATAGTCTACAGT
1 TCG-CGTTGCGATTTTCC-AATTCGCGTTGCGAT--TTTCCAGT
***
3767253 T-GTCGTTGCGATTTTCCAAATT--CGTTGCGA-AAACC-G-
1 TCG-CGTTGCGATTTTCC-AATTCGCGTTGCGATTTTCCAGT
*
3767289 T---GTTGCGATTTTCCATTTCGCGTTGCGATTTTCCAGT
1 TCGCGTTGCGATTTTCCAATTCGCGTTGCGATTTTCCAGT
* * *
3767326 TCGCGTTGCGATAGTTT-AAAATCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGAT--TTTCCAATTCGCGTTGCGATTTTCCAGT
3767367 TCGCGTTGCGATTTTCCA
1 TCGCGTTGCGATTTTCCA
3767385 GTTGCGATAA
Statistics
Matches: 221, Mismatches: 19, Indels: 30
0.82 0.07 0.11
Matches are distributed among these distances:
32 3 0.01
33 13 0.06
34 8 0.04
35 2 0.01
36 2 0.01
37 2 0.01
38 1 0.00
39 3 0.01
40 78 0.35
41 82 0.37
42 24 0.11
43 3 0.01
ACGTcount: A:0.15, C:0.22, G:0.23, T:0.40
Consensus pattern (40 bp):
TCGCGTTGCGATTTTCCAATTCGCGTTGCGATTTTCCAGT
Found at i:3767218 original size:22 final size:22
Alignment explanation
Indices: 3767193--3767264 Score: 87
Period size: 22 Copynumber: 3.4 Consensus size: 22
3767183 TTCCAGTTCG
3767193 CGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATAGTCTACAGTTGT
* * **
3767215 CGTTGCGAT--TTTCCAAAT-T
1 CGTTGCGATAGTCTACAGTTGT
3767234 CGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATAGTCTACAGTTGT
3767256 CGTTGCGAT
1 CGTTGCGAT
3767265 TTTCCAAATT
Statistics
Matches: 39, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
19 10 0.26
20 5 0.13
21 5 0.13
22 19 0.49
ACGTcount: A:0.18, C:0.19, G:0.25, T:0.38
Consensus pattern (22 bp):
CGTTGCGATAGTCTACAGTTGT
Found at i:3767238 original size:19 final size:19
Alignment explanation
Indices: 3767214--3767282 Score: 75
Period size: 19 Copynumber: 3.5 Consensus size: 19
3767204 TCTACAGTTG
3767214 TCGTTGCGATTTTCCAAAT
1 TCGTTGCGATTTTCCAAAT
* * **
3767233 TCGTTGCGATAGTCTACAGTT
1 TCGTTGCGAT--TTTCCAAAT
3767254 GTCGTTGCGATTTTCCAAAT
1 -TCGTTGCGATTTTCCAAAT
3767274 TCGTTGCGA
1 TCGTTGCGA
3767283 AAACCGTGTT
Statistics
Matches: 39, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
19 19 0.49
20 5 0.13
21 5 0.13
22 10 0.26
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.39
Consensus pattern (19 bp):
TCGTTGCGATTTTCCAAAT
Found at i:3768074 original size:6 final size:6
Alignment explanation
Indices: 3768063--3768097 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
3768053 CTCGTTTCGT
3768063 GTGGTC GTGGTC GTGGTC GTGGTC GTGGTC GTGGT
1 GTGGTC GTGGTC GTGGTC GTGGTC GTGGTC GTGGT
3768098 AATACGTGTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.00, C:0.14, G:0.51, T:0.34
Consensus pattern (6 bp):
GTGGTC
Found at i:3768206 original size:22 final size:22
Alignment explanation
Indices: 3768174--3768230 Score: 96
Period size: 22 Copynumber: 2.6 Consensus size: 22
3768164 CTTTTTTTTA
3768174 ACTATCGCAACGACAACTGTAG
1 ACTATCGCAACGACAACTGTAG
* *
3768196 ACTTTCGCAACAACAACTGTAG
1 ACTATCGCAACGACAACTGTAG
3768218 ACTATCGCAACGA
1 ACTATCGCAACGA
3768231 ATTTGGAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.37, C:0.28, G:0.16, T:0.19
Consensus pattern (22 bp):
ACTATCGCAACGACAACTGTAG
Found at i:3768295 original size:27 final size:27
Alignment explanation
Indices: 3768257--3768327 Score: 124
Period size: 27 Copynumber: 2.6 Consensus size: 27
3768247 CCACATTGTA
3768257 GACTATCGCAATGCGAATGCGATTTTC
1 GACTATCGCAATGCGAATGCGATTTTC
3768284 GACTATCGCAATGCGAATGCGATTTTC
1 GACTATCGCAATGCGAATGCGATTTTC
* *
3768311 AACTATCGCAACGCGAA
1 GACTATCGCAATGCGAA
3768328 ATGGAAAATC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.25
Consensus pattern (27 bp):
GACTATCGCAATGCGAATGCGATTTTC
Found at i:3768340 original size:20 final size:20
Alignment explanation
Indices: 3768315--3768366 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
3768305 ATTTTCAACT
*
3768315 ATCGCAACGCGAAATGGAAA
1 ATCGCAACGCGAAATGAAAA
3768335 ATCGCAACGCGAAATGAAAA
1 ATCGCAACGCGAAATGAAAA
*
3768355 ATTGCAACGCGA
1 ATCGCAACGCGA
3768367 TTTCCAACTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.44, C:0.21, G:0.23, T:0.12
Consensus pattern (20 bp):
ATCGCAACGCGAAATGAAAA
Found at i:3768793 original size:40 final size:39
Alignment explanation
Indices: 3768717--3768793 Score: 93
Period size: 40 Copynumber: 1.9 Consensus size: 39
3768707 TTATTTTTAT
** **
3768717 TAATATTATAATGAAGTGATATTTTTATTAATATTATAA
1 TAATATTATAACCAAGTGATATTTGAATTAATATTATAA
3768756 TAATATTTATAACCAAGTGATATTTGAATATAA-ATTAT
1 TAATA-TTATAACCAAGTGATATTTGAAT-TAATATTAT
3768794 TTGTATTAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
39 5 0.16
40 24 0.75
41 3 0.09
ACGTcount: A:0.44, C:0.03, G:0.08, T:0.45
Consensus pattern (39 bp):
TAATATTATAACCAAGTGATATTTGAATTAATATTATAA
Found at i:3771847 original size:2 final size:2
Alignment explanation
Indices: 3771842--3771876 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
3771832 AAAAAAATAC
*
3771842 AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3771877 GAATTAATCG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:3773004 original size:82 final size:81
Alignment explanation
Indices: 3772867--3773022 Score: 186
Period size: 82 Copynumber: 1.9 Consensus size: 81
3772857 AAAAAAAAAA
* * * * * * * *
3772867 TTAATGATGACATGATATTATTTTATGGTGACATATCAATCTTACCGTTATTTTTTTAATGGTGG
1 TTAATGATGACATGATATTATATTATAGTGACACATCAATCTTACCATCA-ATTTTTAATGATGA
3772932 ATGACCAAAAAAACTAT
65 ATGACCAAAAAAACTAT
* * * *
3772949 TTAATTATGACATGATATTATATTATAGTGTCACATCAATTTTACTATCAATTTTTAATGATGAA
1 TTAATGATGACATGATATTATATTATAGTGACACATCAATCTTACCATCAATTTTTAATGATGAA
*
3773014 TGACTAAAA
66 TGACCAAAA
3773023 TAAAATTAGA
Statistics
Matches: 61, Mismatches: 13, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
81 20 0.33
82 41 0.67
ACGTcount: A:0.37, C:0.10, G:0.12, T:0.41
Consensus pattern (81 bp):
TTAATGATGACATGATATTATATTATAGTGACACATCAATCTTACCATCAATTTTTAATGATGAA
TGACCAAAAAAACTAT
Found at i:3780520 original size:14 final size:15
Alignment explanation
Indices: 3780489--3780523 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
3780479 TCATCATATC
*
3780489 TAATTTATTTATTTT
1 TAATTTATTTACTTT
3780504 TAATTTATTT-CTTT
1 TAATTTATTTACTTT
3780518 TAATTT
1 TAATTT
3780524 TGTGTTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (15 bp):
TAATTTATTTACTTT
Found at i:3781409 original size:20 final size:21
Alignment explanation
Indices: 3781380--3781428 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 21
3781370 TACTAACACC
3781380 CTTAAAAAATAATTTT-ATTA
1 CTTAAAAAATAATTTTAATTA
* **
3781400 CTTAATAAATTTTTTTAATTA
1 CTTAAAAAATAATTTTAATTA
*
3781421 CTTTAAAA
1 CTTAAAAA
3781429 TAAATAAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
20 13 0.57
21 10 0.43
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.49
Consensus pattern (21 bp):
CTTAAAAAATAATTTTAATTA
Found at i:3782285 original size:60 final size:60
Alignment explanation
Indices: 3782190--3782330 Score: 171
Period size: 60 Copynumber: 2.4 Consensus size: 60
3782180 ATACTTATTT
* * * *
3782190 TAAATTAGACC-CTAAAATTTTAAATATTTCAATTTCATCCCTAAAATATTAC-TATCATTC
1 TAAATTAGTCCTC-AAACTTTTAAATATTTCAATTTCATCCCCAAAATATGACAT-TCATTC
*
3782250 TAAATTAGTCCTCAAACTTTTGAAA-ATTTCAATTTCATCCCCAAACTATGACATTCATTC
1 TAAATTAGTCCTCAAACTTTT-AAATATTTCAATTTCATCCCCAAAATATGACATTCATTC
* *
3782310 TAAATTGGTCCTTAAACTTTT
1 TAAATTAGTCCTCAAACTTTT
3782331 TGTACATTCC
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
60 66 0.93
61 5 0.07
ACGTcount: A:0.36, C:0.20, G:0.04, T:0.40
Consensus pattern (60 bp):
TAAATTAGTCCTCAAACTTTTAAATATTTCAATTTCATCCCCAAAATATGACATTCATTC
Found at i:3782355 original size:60 final size:59
Alignment explanation
Indices: 3782219--3782362 Score: 150
Period size: 60 Copynumber: 2.4 Consensus size: 59
3782209 TTAAATATTT
* * *
3782219 CAATTTCATCCCTAAAATATTAC-TATCATTCTAAATTAGTCCTCAAACTTTTGAAAATTT
1 CAATTTCATCCCCAAACTA-TACAT-TCATTCTAAATTAGTCCTCAAACTTTTGAAAATTC
* * * *
3782279 CAATTTCATCCCCAAACTATGACATTCATTCTAAATTGGTCCTTAAACTTTTTGTACATTC
1 CAATTTCATCCCCAAACTAT-ACATTCATTCTAAATTAGTCCTCAAAC-TTTTGAAAATTC
*
3782340 CAA-TTCTAT-CTCAAACTATACAT
1 CAATTTC-ATCCCCAAACTATACAT
3782363 ATATGCTAAT
Statistics
Matches: 72, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
59 5 0.07
60 52 0.72
61 15 0.21
ACGTcount: A:0.34, C:0.23, G:0.04, T:0.39
Consensus pattern (59 bp):
CAATTTCATCCCCAAACTATACATTCATTCTAAATTAGTCCTCAAACTTTTGAAAATTC
Found at i:3782577 original size:60 final size:58
Alignment explanation
Indices: 3782481--3782657 Score: 151
Period size: 60 Copynumber: 3.0 Consensus size: 58
3782471 AATTTGGAGA
* ** *
3782481 TGAAATT-GAAATATTTAAAAGTTTGGGGACCTATTTAAAAGTAAGGTCATAATTTAGGG
1 TGAAATTAG-AATATTCAAAAGTTTAAGGACCAATTTAAAA-TAAGGTCATAATTTAGGG
* ** * *
3782540 ATGCAATTAGAATATTCAAAAGTTTAAGGATTAATTTAGAATGAGAGTCATAATTTGAGGG
1 -TGAAATTAGAATATTCAAAAGTTTAAGGACCAATTTAAAATAAG-GTCATAATTT-AGGG
* * * * *
3782601 TGAAATTGGCATCTTTAAAAGTTTGAGGACCAATTTAAAATGAAGG-CTATAATTTAG
1 TGAAATTAGAATATTCAAAAGTTTAAGGACCAATTTAAAAT-AAGGTC-ATAATTTAG
3782658 ATACATGATG
Statistics
Matches: 93, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
59 6 0.06
60 80 0.86
61 7 0.08
ACGTcount: A:0.40, C:0.06, G:0.21, T:0.33
Consensus pattern (58 bp):
TGAAATTAGAATATTCAAAAGTTTAAGGACCAATTTAAAATAAGGTCATAATTTAGGG
Found at i:3783240 original size:20 final size:20
Alignment explanation
Indices: 3783215--3783259 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
3783205 TTATCTGGGA
3783215 AAAAATCCGGTCTCGGGTTT
1 AAAAATCCGGTCTCGGGTTT
* *
3783235 AAAAATCCGGTTTGGGGTTT
1 AAAAATCCGGTCTCGGGTTT
3783255 AAAAA
1 AAAAA
3783260 ATTGGATGAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.29
Consensus pattern (20 bp):
AAAAATCCGGTCTCGGGTTT
Found at i:3783965 original size:2 final size:2
Alignment explanation
Indices: 3783958--3784005 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
3783948 TATCTTTTCA
3783958 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3784000 AT AT AT
1 AT AT AT
3784006 TTTTTTAAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3784427 original size:2 final size:2
Alignment explanation
Indices: 3784420--3784470 Score: 88
Period size: 2 Copynumber: 26.5 Consensus size: 2
3784410 CTTTTGACCT
3784420 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3784462 -A TA TA -A TA T
1 TA TA TA TA TA T
3784471 TGGGTAAAGT
Statistics
Matches: 47, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
1 2 0.04
2 45 0.96
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:3784922 original size:29 final size:29
Alignment explanation
Indices: 3784843--3784925 Score: 80
Period size: 30 Copynumber: 2.8 Consensus size: 29
3784833 ATATTTTTAA
*
3784843 AAAATTCTT-ATTAAGCCTCTCAAATTTTTG
1 AAAATT-TTAATTAAACCTCT-AAATTTTTG
*
3784873 AAAATTTTAATTCAAACCTCTAAATTTTTT
1 AAAATTTTAATT-AAACCTCTAAATTTTTG
* *
3784903 AAAGTTTTAAGTT-ATCCTCTAAA
1 AAAATTTTAA-TTAAACCTCTAAA
3784926 CTTTATCACT
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
29 11 0.24
30 26 0.57
31 9 0.20
ACGTcount: A:0.37, C:0.14, G:0.05, T:0.43
Consensus pattern (29 bp):
AAAATTTTAATTAAACCTCTAAATTTTTG
Found at i:3785169 original size:60 final size:60
Alignment explanation
Indices: 3785105--3785294 Score: 240
Period size: 60 Copynumber: 3.1 Consensus size: 60
3785095 GTTGGGTGAT
* * *
3785105 CATTTTATAACTTTTAATAGTCGACGAACTCAACAAAGCAACATCATATATTCGAAGAAC
1 CATTTTGTAACTTTTAATAGTCGACGAACTCAACAAAACAACATCATATAGTCGAAGAAC
* *
3785165 CATTTTGTAACTTTTAATAGTCGATGAACTCAACAAAACAACATCATATAGTCGGAGAAC
1 CATTTTGTAACTTTTAATAGTCGACGAACTCAACAAAACAACATCATATAGTCGAAGAAC
* * * * * *
3785225 CATTTTGTAACTTTTAATAATAGA-GTGACTCAACAAAACAATAGCATATAGTC-AGGAAAC
1 CATTTTGTAACTTTTAATAGTCGACG-AACTCAACAAAACAACATCATATAGTCGAAG-AAC
3785285 CATTTATGTA
1 CATTT-TGTA
3785295 TTTTGCCCTA
Statistics
Matches: 115, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
59 2 0.02
60 109 0.95
61 4 0.03
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.29
Consensus pattern (60 bp):
CATTTTGTAACTTTTAATAGTCGACGAACTCAACAAAACAACATCATATAGTCGAAGAAC
Found at i:3787977 original size:16 final size:16
Alignment explanation
Indices: 3787956--3787986 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
3787946 CTTGACGGAT
3787956 TTATATATTTAATATA
1 TTATATATTTAATATA
*
3787972 TTATATATTTTATAT
1 TTATATATTTAATAT
3787987 TCAATATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTATATATTTAATATA
Found at i:3789849 original size:2 final size:2
Alignment explanation
Indices: 3789842--3789893 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
3789832 TGAAATCTTC
3789842 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3789884 AT AT AT AT AT
1 AT AT AT AT AT
3789894 CGATACATTT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3790096 original size:21 final size:20
Alignment explanation
Indices: 3790079--3790151 Score: 67
Period size: 21 Copynumber: 3.4 Consensus size: 20
3790069 CACCGAAATG
*
3790079 CCACATAATTATCCCGAAGGA
1 CCACATAATT-TCCCGAAAGA
*
3790100 CCACATAGGTTTGCACCG-AAGA
1 CCACATA-ATTT-C-CCGAAAGA
3790122 GCCACATAATTGTCCCGAAAGA
1 -CCACATAATT-TCCCGAAAGA
3790144 CCACATAA
1 CCACATAA
3790152 GTTTGCACCG
Statistics
Matches: 43, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
21 19 0.44
22 13 0.30
23 11 0.26
ACGTcount: A:0.37, C:0.29, G:0.16, T:0.18
Consensus pattern (20 bp):
CCACATAATTTCCCGAAAGA
Found at i:3790119 original size:44 final size:44
Alignment explanation
Indices: 3790069--3790173 Score: 149
Period size: 44 Copynumber: 2.4 Consensus size: 44
3790059 TCGTAATTTA
* *
3790069 CACCGAAATGCCACATAATTATCCCGAAGGACCACATAGGTTTG
1 CACCGAAATGCCACATAATTATCCCGAAAGACCACATAAGTTTG
*
3790113 CACCGAAGA-GCCACATAATTGTCCCGAAAGACCACATAAGTTTG
1 CACCGAA-ATGCCACATAATTATCCCGAAAGACCACATAAGTTTG
* *
3790157 CACCGAAGTGCTACATA
1 CACCGAAATGCCACATA
3790174 GGACCCTCGA
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
44 53 0.98
45 1 0.02
ACGTcount: A:0.35, C:0.28, G:0.18, T:0.19
Consensus pattern (44 bp):
CACCGAAATGCCACATAATTATCCCGAAAGACCACATAAGTTTG
Found at i:3790126 original size:23 final size:24
Alignment explanation
Indices: 3790092--3790164 Score: 77
Period size: 23 Copynumber: 3.2 Consensus size: 24
3790082 CATAATTATC
3790092 CCGAAG-GACCACATAGGTTTGCA
1 CCGAAGAGACCACATAGGTTTGCA
*
3790115 CCGAAGAG-CCACATA--ATTGTC-
1 CCGAAGAGACCACATAGGTTTG-CA
*
3790136 CCGAA-AGACCACATAAGTTTGCA
1 CCGAAGAGACCACATAGGTTTGCA
3790159 CCGAAG
1 CCGAAG
3790165 TGCTACATAG
Statistics
Matches: 41, Mismatches: 2, Indels: 13
0.73 0.04 0.23
Matches are distributed among these distances:
20 2 0.05
21 15 0.37
22 2 0.05
23 21 0.51
24 1 0.02
ACGTcount: A:0.34, C:0.27, G:0.22, T:0.16
Consensus pattern (24 bp):
CCGAAGAGACCACATAGGTTTGCA
Found at i:3791165 original size:20 final size:20
Alignment explanation
Indices: 3791140--3791196 Score: 96
Period size: 20 Copynumber: 2.8 Consensus size: 20
3791130 TGTTGACAGA
3791140 GGTATCGATACCTTAAGGAT
1 GGTATCGATACCTTAAGGAT
*
3791160 GGTATCGATACCTAAAGGAT
1 GGTATCGATACCTTAAGGAT
3791180 GGTATCGATACCCTTAA
1 GGTATCGATA-CCTTAA
3791197 AACATCGAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
20 29 0.85
21 5 0.15
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.28
Consensus pattern (20 bp):
GGTATCGATACCTTAAGGAT
Found at i:3791329 original size:20 final size:21
Alignment explanation
Indices: 3791287--3791340 Score: 83
Period size: 20 Copynumber: 2.6 Consensus size: 21
3791277 TACATGTGGA
3791287 GGTATCGATACCCTTGAAGGGT
1 GGTATCGATACCCTT-AAGGGT
*
3791309 GGTATCGGTACCCTT-AGGGT
1 GGTATCGATACCCTTAAGGGT
3791329 GGTATCGATACC
1 GGTATCGATACC
3791341 TCTAAGTATG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 16 0.53
22 14 0.47
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.28
Consensus pattern (21 bp):
GGTATCGATACCCTTAAGGGT
Found at i:3791733 original size:21 final size:21
Alignment explanation
Indices: 3791686--3791733 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
3791676 TTATGAGAAT
* **
3791686 GTGAACTTTGAATAAGTGATT
1 GTGAACTTTGAAAAAGTGAAA
*
3791707 GAGAACTTTGAAAAAGTGAAA
1 GTGAACTTTGAAAAAGTGAAA
3791728 GTGAAC
1 GTGAAC
3791734 AATATTATGT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.27
Consensus pattern (21 bp):
GTGAACTTTGAAAAAGTGAAA
Found at i:3798774 original size:3 final size:3
Alignment explanation
Indices: 3798768--3798836 Score: 124
Period size: 3 Copynumber: 23.7 Consensus size: 3
3798758 ATATTATTAT
3798768 TAA TAA TAA T-A TAA TAA TAA TAA TAA T-A TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
3798814 TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TA
3798837 TCCCGGACAA
Statistics
Matches: 64, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
2 4 0.06
3 60 0.94
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:3799122 original size:55 final size:55
Alignment explanation
Indices: 3799075--3799557 Score: 795
Period size: 55 Copynumber: 8.8 Consensus size: 55
3799065 CAATCGTATA
* * * * *
3799075 TGCTCTCTATTTCTTCAGAGAGTATAAGACTCGAACAATTTTCAACAATCGTGCC
1 TGCTCCCTATATCTTCAGAGAGTAAAAGACTCGAACAATCTTCAACAATCGCGCC
* * *
3799130 TGCACCCTATATCTTCAGAGAGTAAAAGACTCGAACAATTTTCAACAATCGTGCC
1 TGCTCCCTATATCTTCAGAGAGTAAAAGACTCGAACAATCTTCAACAATCGCGCC
* *
3799185 TGCTCCTTATATCTTCAGAGAGTAAAAGACTCGAACAATCTTCAACAATCGCGTC
1 TGCTCCCTATATCTTCAGAGAGTAAAAGACTCGAACAATCTTCAACAATCGCGCC
* *
3799240 TGCTCCCTATATCTTCAGAGAGTAAAAGACTCGAACAATCTTCAATAATCGCGCT
1 TGCTCCCTATATCTTCAGAGAGTAAAAGACTCGAACAATCTTCAACAATCGCGCC
* *
3799295 TGCTCCCTATATCTTCAGACAGTAAAGGACTCGAACAATCTTCAACAATCGCGCC
1 TGCTCCCTATATCTTCAGAGAGTAAAAGACTCGAACAATCTTCAACAATCGCGCC
* *
3799350 TGCTCCCTATATCTTCAGAGAGTAAAAGACTCGAACAATTTTCAACAATCGTGCC
1 TGCTCCCTATATCTTCAGAGAGTAAAAGACTCGAACAATCTTCAACAATCGCGCC
3799405 TGCTCCCTATATCTTCAGAGAGTAAAAGACTCGAACAATCTTCAACAATCGCGCC
1 TGCTCCCTATATCTTCAGAGAGTAAAAGACTCGAACAATCTTCAACAATCGCGCC
*
3799460 TGCTCCCTATATCTTCAGAGAGTAAAAGACTCGAACAATCTTCAACAATCGCACC
1 TGCTCCCTATATCTTCAGAGAGTAAAAGACTCGAACAATCTTCAACAATCGCGCC
* *
3799515 TTCTCCCTATATCTTCAGAGAGTAAAGGACTCGAACAATCTTC
1 TGCTCCCTATATCTTCAGAGAGTAAAAGACTCGAACAATCTTC
3799558 TTCTTACGGG
Statistics
Matches: 402, Mismatches: 26, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 402 1.00
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (55 bp):
TGCTCCCTATATCTTCAGAGAGTAAAAGACTCGAACAATCTTCAACAATCGCGCC
Found at i:3799585 original size:55 final size:54
Alignment explanation
Indices: 3799196--3800373 Score: 627
Period size: 55 Copynumber: 22.1 Consensus size: 54
3799186 GCTCCTTATA
* * ** * * * *
3799196 TCTTCAGAGAGTAAAAGACTCGAACAATCTTCAACAATCGCG-TCTGCTCCCTATA
1 TCTTCAGGGAGTAAAGGACTCGAAC-ATCTTCTTCAAACGGGTTC-GCTCCCTCTT
* * * * * * *
3799251 TCTTCAGAGAGTAAAAGACTCGAACAATCTTCAAT-AATCGCGCTT-GCTCCCTATA
1 TCTTCAGGGAGTAAAGGACTCGAAC-ATCTTC-TTCAAACG-GGTTCGCTCCCTCTT
** ** * * * * *
3799306 TCTTCAGACAGTAAAGGACTCGAACAATCTTCAACAATCGCG-CCTGCTCCCTATA
1 TCTTCAGGGAGTAAAGGACTCGAAC-ATCTTCTTCAAACGGGTTC-GCTCCCTCTT
* * * ** * * * * *
3799361 TCTTCAGAGAGTAAAAGACTCGAACAATTTTCAACAATCGTG-CCTGCTCCCTATA
1 TCTTCAGGGAGTAAAGGACTCGAAC-ATCTTCTTCAAACGGGTTC-GCTCCCTCTT
* * ** * * * * *
3799416 TCTTCAGAGAGTAAAAGACTCGAACAATCTTCAACAATCGCG-CCTGCTCCCTATA
1 TCTTCAGGGAGTAAAGGACTCGAAC-ATCTTCTTCAAACGGGTTC-GCTCCCTCTT
* * ** * ** * *
3799471 TCTTCAGAGAGTAAAAGACTCGAACAATCTTCAACAATCGCACCTT--CTCCCTATA
1 TCTTCAGGGAGTAAAGGACTCGAAC-ATCTTCTTCAAACG--GGTTCGCTCCCTCTT
* **
3799526 TCTTCAGAGAGTAAAGGACTCGAACAATCTTCTTCTTACGGGTTCGCTCCCTCTT
1 TCTTCAGGGAGTAAAGGACTCGAAC-ATCTTCTTCAAACGGGTTCGCTCCCTCTT
* * * * * **
3799581 TCTTCAGGAAGTATAA-AACTCAAAAAATCGTCTTCTTACGGGTTCGCTCCCTCTT
1 TCTTCAGGGAGTA-AAGGACTC-GAACATCTTCTTCAAACGGGTTCGCTCCCTCTT
* * * * * ** *
3799636 TCTTCAGGAAGTATAGAAATCGAACATCTTTTTCAAACAAGTTCACTCCCTCTT
1 TCTTCAGGGAGTAAAGGACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTT
* *
3799690 TC-TCTAGGGAGT-ATGGAACTC-AGACATCTTCTACAAACGGGTTCGCTCCCTCTT
1 TCTTC-AGGGAGTAAAGG-ACTCGA-ACATCTTCTTCAAACGGGTTCGCTCCCTCTT
** *
3799744 TC-TCTAGGGAGT-GTGGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCGCTT
1 TCTTC-AGGGAGTAAAGG-ACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTT
* *
3799798 TC-TCTAGGGAGT-ATGGAACTCGAACATCTTCTTCAAACGGGTTCGCTCTCTCTT
1 TCTTC-AGGGAGTAAAGG-ACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTT
* * *
3799852 TCTTCAGGAAGTATAA-AACTTGAACA---TCTTCAAACGGGTTCGCTCCCTCTT
1 TCTTCAGGGAGTA-AAGGACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTT
* * ** *
3799903 T-TT-AGGGAGT-ATGGAACTCAAACATCTTCTTCTTACGGGTTTGCTCCCTCTT
1 TCTTCAGGGAGTAAAGG-ACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTT
* ** * *
3799955 TC-TCTAGGGAGTATATAACTCAAACA--ATCTTCAAACGGGTTCGCTCCCTC--
1 TCTTC-AGGGAGTAAAGGACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTT
* * * * *
3800005 TCTTTAGGGAGTATAGAACTTGAACATATTCTTCAAACGGGTTCGCTCCCTCTT
1 TCTTCAGGGAGTAAAGGACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTT
* * *
3800059 TC-TCTAGGAAGTATAA-AACTCGAACA---TCTTCAAACGGGGTTCACTCCCTCTT
1 TCTTC-AGGGAGTA-AAGGACTCGAACATCTTCTTCAAAC-GGGTTCGCTCCCTCTT
* * **
3800111 T-TT-AGGGAGT-ATGGAACTCAAACATCTTCTTCTTACGGGTTCGCTCCCTCTT
1 TCTTCAGGGAGTAAAGG-ACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTT
* * * *
3800163 TC-TCTAGGGAGTATAGAACTCAAACA--ATCTTCAAACGGGTTCGCTCCCTC--
1 TCTTC-AGGGAGTAAAGGACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTT
* * * *
3800213 TCTTTAGGGAGTATAGAACTCGAAC-TATTCTTCAAAC-GGTTCGCTCCCTC-T
1 TCTTCAGGGAGTAAAGGACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTT
* * * *
3800264 TC-TCTAGGGAGTATAGAAC-CGGACATCTTCTTCAAACAGGTTCGCTCCCTCTT
1 TCTTC-AGGGAGTAAAGGACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTT
* * * * * * *
3800317 TCATCAGGAAGTATAGAACTTGGACAT-AT-TTCAAACGGGTTCGCTCCCTCTT
1 TCTTCAGGGAGTAAAGGACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTT
3800369 T-TTCA
1 TCTTCA
3800374 AATAAGTTCG
Statistics
Matches: 950, Mismatches: 115, Indels: 120
0.80 0.10 0.10
Matches are distributed among these distances:
47 1 0.00
48 1 0.00
49 13 0.01
50 75 0.08
51 75 0.08
52 158 0.17
53 31 0.03
54 237 0.25
55 351 0.37
56 6 0.01
57 2 0.00
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (54 bp):
TCTTCAGGGAGTAAAGGACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTT
Found at i:3799717 original size:54 final size:53
Alignment explanation
Indices: 3799534--3800369 Score: 806
Period size: 54 Copynumber: 15.9 Consensus size: 53
3799524 TATCTTCAGA
* * **
3799534 GAGTAAAGGACTCGAACAATCTTCTTCTTACGGGTTCGCTCCCTCTTTCT-TCAGG
1 GAGTATAGAACTCG-AC-ATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCT-AGG
* * * * * **
3799589 AAGTATAAAACTCAAAAAATCGTCTTCTTACGGGTTCGCTCCCTCTTTCT-TCAGG
1 GAGTATAGAACTC--GACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCT-AGG
* * * ** *
3799644 AAGTATAGAAATCGAACATCTTTTTCAAACAAGTTCACTCCCTCTTTCTCTAGG
1 GAGTATAGAACTCG-ACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
* *
3799698 GAGTATGGAACTCAGACATCTTCTACAAACGGGTTCGCTCCCTCTTTCTCTAGG
1 GAGTATAGAACTC-GACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
* * *
3799752 GAGTGTGGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCGCTTTCTCTAGG
1 GAGTATAGAACTCG-ACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
* *
3799806 GAGTATGGAACTCGAACATCTTCTTCAAACGGGTTCGCTCTCTCTTTCT-TCAGG
1 GAGTATAGAACTCG-ACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCT-AGG
* * * *
3799860 AAGTATAAAACTTGA-A-CATCTTCAAACGGGTTCGCTCCCTCTTT-T-TAGG
1 GAGTATAGAACTCGACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
* * ** *
3799909 GAGTATGGAACTCAAACATCTTCTTCTTACGGGTTTGCTCCCTCTTTCTCTAGG
1 GAGTATAGAACTC-GACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
* * * *
3799963 GAGTATATAACTC-A-AACAATCTTCAAACGGGTTCGCTCCCTC--TCTTTAGG
1 GAGTATAGAACTCGACATC-TTCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
* *
3800013 GAGTATAGAACTTGAACATATTCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
1 GAGTATAGAACTCG-ACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
* * * *
3800067 AAGTATAAAACTCGA-A-CATCTTCAAACGGGGTTCACTCCCTCTTT-T-TAGG
1 GAGTATAGAACTCGACATCTTCTTCAAAC-GGGTTCGCTCCCTCTTTCTCTAGG
* * **
3800117 GAGTATGGAACTCAAACATCTTCTTCTTACGGGTTCGCTCCCTCTTTCTCTAGG
1 GAGTATAGAACTC-GACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
* * *
3800171 GAGTATAGAACTC-A-AACAATCTTCAAACGGGTTCGCTCCCTC--TCTTTAGG
1 GAGTATAGAACTCGACATC-TTCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
*
3800221 GAGTATAGAACTCGA-ACTATTCTTCAAAC-GGTTCGCTCCCTC-TTCTCTAGG
1 GAGTATAGAACTCGACA-TCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
*
3800272 GAGTATAGAAC-CGGACATCTTCTTCAAACAGGTTCGCTCCCTCTTTCATC-AGG
1 GAGTATAGAACTC-GACATCTTCTTCAAACGGGTTCGCTCCCTCTTTC-TCTAGG
* * *
3800325 AAGTATAGAACTTGGACAT-AT-TTCAAACGGGTTCGCTCCCTCTTT
1 GAGTATAGAAC-TCGACATCTTCTTCAAACGGGTTCGCTCCCTCTTT
3800370 TTCAAATAAG
Statistics
Matches: 656, Mismatches: 90, Indels: 73
0.80 0.11 0.09
Matches are distributed among these distances:
49 12 0.02
50 69 0.11
51 84 0.13
52 163 0.25
53 32 0.05
54 237 0.36
55 58 0.09
56 1 0.00
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (53 bp):
GAGTATAGAACTCGACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
Found at i:3800024 original size:104 final size:104
Alignment explanation
Indices: 3799563--3800369 Score: 855
Period size: 104 Copynumber: 7.7 Consensus size: 104
3799553 TCTTCTTCTT
* * ** * * **
3799563 ACGGGTTCGCTCCCTCTTTCTTCAGGAAGTATAAAACTCAAAAAATCGTCTTCTTACGGGTTCGC
1 ACGGGTTCGCTCCCTC--TCTTTAGGGAGTATGGAACTC-AAACATCTTCTTCAAACGGGTTCGC
* *
3799628 TCCCTCTTTCT-TCAGGAAGTATAGAAATCGAAC-ATCTTTTTCAA
63 TCCCTCTTTCTCT-AGGGAGTATAGAACTCGAACAATC---TTCAA
** * * * *
3799672 ACAAGTTCACTCCCTCTTTCTCTAGGGAGTATGGAACTCAGACATCTTCTACAAACGGGTTCGCT
1 ACGGGTTCGCTCCCTC--TCTTTAGGGAGTATGGAACTCAAACATCTTCTTCAAACGGGTTCGCT
* * *
3799737 CCCTCTTTCTCTAGGGAGTGTGGAACTCGAACATCTTCTTCAA
64 CCCTCTTTCTCTAGGGAGTATAGAACTCGAACA--ATCTTCAA
* * *
3799780 ACGGGTTCGCTCCCGCTTTCTCTAGGGAGTATGGAACTCGAACATCTTCTTCAAACGGGTTCGCT
1 ACGGGTTCGCT-CC-CTCTCTTTAGGGAGTATGGAACTCAAACATCTTCTTCAAACGGGTTCGCT
* * * *
3799845 CTCTCTTTCT-TCAGGAAGTATAAAACTTGAAC-ATCTTCAA
64 CCCTCTTTCTCT-AGGGAGTATAGAACTCGAACAATCTTCAA
* ** *
3799885 ACGGGTTCGCTCCCTCTTTTTAGGGAGTATGGAACTCAAACATCTTCTTCTTACGGGTTTGCTCC
1 ACGGGTTCGCTCCCTCTCTTTAGGGAGTATGGAACTCAAACATCTTCTTCAAACGGGTTCGCTCC
* *
3799950 CTCTTTCTCTAGGGAGTATATAACTCAAACAATCTTCAA
66 CTCTTTCTCTAGGGAGTATAGAACTCGAACAATCTTCAA
* ** *
3799989 ACGGGTTCGCTCCCTCTCTTTAGGGAGTATAGAACTTGAACATATTCTTCAAACGGGTTCGCTCC
1 ACGGGTTCGCTCCCTCTCTTTAGGGAGTATGGAACTCAAACATCTTCTTCAAACGGGTTCGCTCC
* *
3800054 CTCTTTCTCTAGGAAGTATAAAACTCGAAC-ATCTTCAA
66 CTCTTTCTCTAGGGAGTATAGAACTCGAACAATCTTCAA
* * **
3800092 ACGGGGTTCACTCCCTCTTTTTAGGGAGTATGGAACTCAAACATCTTCTTCTTACGGGTTCGCTC
1 AC-GGGTTCGCTCCCTCTCTTTAGGGAGTATGGAACTCAAACATCTTCTTCAAACGGGTTCGCTC
*
3800157 CCTCTTTCTCTAGGGAGTATAGAACTCAAACAATCTTCAA
65 CCTCTTTCTCTAGGGAGTATAGAACTCGAACAATCTTCAA
* * *
3800197 ACGGGTTCGCTCCCTCTCTTTAGGGAGTATAGAACTCGAAC-TATTCTTCAAAC-GGTTCGCTCC
1 ACGGGTTCGCTCCCTCTCTTTAGGGAGTATGGAACTCAAACATCTTCTTCAAACGGGTTCGCTCC
* *
3800260 CTC-TTCTCTAGGGAGTATAGAAC-CGGACATCTTCTTCAA
66 CTCTTTCTCTAGGGAGTATAGAACTCGAACA--ATCTTCAA
* * * *** *
3800299 ACAGGTTCGCTCCCTCT-TTCATCAGGAAGTATAGAACTTGGACAT-AT-TTCAAACGGGTTCGC
1 ACGGGTTCGCTCCCTCTCTT--T-AGGGAGTATGGAACTCAAACATCTTCTTCAAACGGGTTCGC
3800361 TCCCTCTTT
63 TCCCTCTTT
3800370 TTCAAATAAG
Statistics
Matches: 597, Mismatches: 82, Indels: 42
0.83 0.11 0.06
Matches are distributed among these distances:
100 4 0.01
101 22 0.04
102 36 0.06
103 95 0.16
104 243 0.41
105 31 0.05
107 1 0.00
108 127 0.21
109 34 0.06
110 2 0.00
111 2 0.00
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (104 bp):
ACGGGTTCGCTCCCTCTCTTTAGGGAGTATGGAACTCAAACATCTTCTTCAAACGGGTTCGCTCC
CTCTTTCTCTAGGGAGTATAGAACTCGAACAATCTTCAA
Found at i:3800426 original size:76 final size:76
Alignment explanation
Indices: 3800289--3800445 Score: 226
Period size: 76 Copynumber: 2.1 Consensus size: 76
3800279 GAACCGGACA
* * * * *
3800289 TCTTCTTCAAACAGGTTCGCTCCCTCTTTCATCAGGAAGTATAGAACTTGGACATATTTCAAACG
1 TCTTTTTCAAACAAGTTCGCTCCATCTTTCATCAGGAAGTATAGAACTCGAACATATTTCAAACG
*
3800354 GGTTCGCTCCC
66 GGCTCGCTCCC
* *
3800365 TCTTTTTCAAATAAGTTCGCTCCATCTTTCTTCAGGAAGTATAGAACTCGAACA-ATCTTCAAAC
1 TCTTTTTCAAACAAGTTCGCTCCATCTTTCATCAGGAAGTATAGAACTCGAACATAT-TTCAAAC
3800429 GGGCTCGCTCCC
65 GGGCTCGCTCCC
3800441 TCTTT
1 TCTTT
3800446 CTCTAGGGAG
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
75 2 0.03
76 70 0.97
ACGTcount: A:0.24, C:0.27, G:0.15, T:0.33
Consensus pattern (76 bp):
TCTTTTTCAAACAAGTTCGCTCCATCTTTCATCAGGAAGTATAGAACTCGAACATATTTCAAACG
GGCTCGCTCCC
Found at i:3800534 original size:182 final size:176
Alignment explanation
Indices: 3800201--3800552 Score: 519
Period size: 182 Copynumber: 2.0 Consensus size: 176
3800191 CTTCAAACGG
* * * *
3800201 GTTCGCTCCCTCTCTTTAGGGAGTATAGAACTCGAACTATTCTTCAAACGGTTCGCTCCCTCTTC
1 GTTCGCTCCCTCTCTTCAGGAAGTATAGAACTCGAACTAATCTTCAAACGGCTCGCTCCCTCTTC
*
3800266 TCTAGGGAGTATAGAACCGGACATCTTCTTCAAACAGGTTCGCTCCCTCTTTCATCAGGAAGTAT
66 TCTAGGGAGTATAGAACCGAACATCTTCTTCAAACAGGTTCGCTCCCTCTTTCATCAGGAAGTAT
* *
3800331 AGAACTTGGACATATTTCAAACGGGTTCGCTCCCTCTTTTTCAAATAA
131 AGAACTCGAACATATTTCAAACGGGTTCGCT--CTCTTTTTCAAATAA
*
3800379 GTTCGCTCCATCTTTCTTCAGGAAGTATAGAACTCGAAC-AATCTTCAAACGGGCTCGCTCCCTC
1 GTTCGCTCC--CTCTCTTCAGGAAGTATAGAACTCGAACTAATCTTCAAAC-GGCTCGCTCCCTC
* * *
3800443 TTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTTTAGGA
63 -TTCTCTAGGGAGTATAGAAC-CGAACATCTTCTTCAAACAGGTTCGCTCCCTCTTTCATCAGGA
3800508 AGTATAGAACTCGAACA-ATCTTCAAACGGGTTCGCTCTCTTTTTC
126 AGTATAGAACTCGAACATAT-TTCAAACGGGTTCGCTCTCTTTTTC
3800553 TCTAGGAAGT
Statistics
Matches: 157, Mismatches: 11, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
178 9 0.06
179 10 0.06
180 46 0.29
181 22 0.14
182 70 0.45
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.32
Consensus pattern (176 bp):
GTTCGCTCCCTCTCTTCAGGAAGTATAGAACTCGAACTAATCTTCAAACGGCTCGCTCCCTCTTC
TCTAGGGAGTATAGAACCGAACATCTTCTTCAAACAGGTTCGCTCCCTCTTTCATCAGGAAGTAT
AGAACTCGAACATATTTCAAACGGGTTCGCTCTCTTTTTCAAATAA
Found at i:3800604 original size:51 final size:51
Alignment explanation
Indices: 3800379--3801989 Score: 1686
Period size: 51 Copynumber: 30.9 Consensus size: 51
3800369 TTTCAAATAA
* * *
3800379 GTTCGCTCCATCTTTCT-TCAGGAAGTATAGAACTCGAACAATCTTCAAACGG
1 GTTCGCTCCCTCTTTCTCT-AGGGAGTATAGAACTCGGAC-ATCTTCAAACGG
* *
3800431 GCTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCAAACGG
1 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACA---TCTTCAAACGG
* * *
3800485 GTTCGCTCCCTCTTTCTTTAGGAAGTATAGAACTCGAACAATCTTCAAACGG
1 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGAC-ATCTTCAAACGG
* * * *
3800537 GTTCGCTCTCTTTTTCTCTAGGAAGTATGGAACTCGGACATCTTCAAACGG
1 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACATCTTCAAACGG
3800588 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACATCTTCTTCAAACGG
1 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACA---TCTTCAAACGG
* * *
3800642 GTTCGCTCCCTCTTTCTTTAGGAAGTATAGAACTCAGACATCTTCTTCAAACGG
1 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACA---TCTTCAAACGG
* * ** * * * *
3800696 GTTCGCTCCCTCTTTTTC-AGGAAGTATAGAACTCTAATAACTTCACACGA
1 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACATCTTCAAACGG
** * * *
3800746 GTTTACTCCCTCTTTCTTTAGGGAGTATGGAACTCGAACATCTTCTTCAAACGG
1 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACA---TCTTCAAACGG
* ** * * * *
3800800 GTTCGCTCCCTCTTTCT-TCAGGAAGTATAGAACTCCAATAACTTCATACGA
1 GTTCGCTCCCTCTTTCTCT-AGGGAGTATAGAACTCGGACATCTTCAAACGG
*
3800851 GTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGGACATCTTCAAACGG
1 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACATCTTCAAACGG
3800902 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACATCTTCTTCAAACGG
1 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACA---TCTTCAAACGG
* ** * * *
3800956 GTTCGCTCCCTCTTTCT-TCAGGAAGTATAGAACTCCAATAACTTCACACGG
1 GTTCGCTCCCTCTTTCTCT-AGGGAGTATAGAACTCGGACATCTTCAAACGG
*
3801007 GTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGGACATCTTCAAACGG
1 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACATCTTCAAACGG
* * * * *
3801058 GTTCGCTCCCTATTTCTCTAGGGAGTATGGAACTTGAACATCTTCTTCAAACGA
1 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACA---TCTTCAAACGG
* * * *
3801112 GTTCGCTCCCTATTTCT-TCAGGAAGTATAGAATTCAGACATCTTCTTCAAACGG
1 GTTCGCTCCCTCTTTCTCT-AGGGAGTATAGAACTCGGACA---TCTTCAAACGG
* * * ** * * *
3801166 GTTCACTCCCTCTTTCTTTAGGAAGTATAGAACTCCAATAACTTCACACGG
1 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACATCTTCAAACGG
* * * ** * *
3801217 GTTTGCTCCCTCTTTCTCTAGGAAGTATTGAACTCAAATAACTTCAAACGG
1 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACATCTTCAAACGG
*
3801268 GTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGGACATCTTCAAACGG
1 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACATCTTCAAACGG
** *
3801319 GTTCGCTATCTCTTTCTCTAGGGAGTATAGAACTCGGACATCTTCTTCAAATGG
1 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACA---TCTTCAAACGG
** * ** * * *
3801373 GTTAACTCCCTCTTTC-CTCAAGGAGTATAGAACTCCAATAACTTCACACGG
1 GTTCGCTCCCTCTTTCTCT-AGGGAGTATAGAACTCGGACATCTTCAAACGG
* * *
3801424 GTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCAGACATCTTGAAACGG
1 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACATCTTCAAACGG
* *
3801475 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGTACTCGGACATCTTCTTCAAATGG
1 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACA---TCTTCAAACGG
*
3801529 GTTTGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACATCTTCTTCAAACGG
1 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACA---TCTTCAAACGG
* *
3801583 GTTCGCTCCCTCTTTC-CTTAGGGAGTATAAAACTCGAACATCTTCTTCAAACGG
1 GTTCGCTCCCTCTTTCTC-TAGGGAGTATAGAACTCGGACA---TCTTCAAACGG
*
3801637 GTTCGCTCCCTCTTTCT-TCA--G-G-ATAGAACTCGGATATCTTCTTCAAACGG
1 GTTCGCTCCCTCTTTCTCT-AGGGAGTATAGAACTCGG--A-CATCTTCAAACGG
* ** * * *
3801687 GTTCGCTCCCTCTTTCT-TCAGGAAGTATAGAACTCCAATAACTTCACACGG
1 GTTCGCTCCCTCTTTCTCT-AGGGAGTATAGAACTCGGACATCTTCAAACGG
* *
3801738 GTTCGCTCCCTCTTT-TACTAGGGAGTATGGAACTCTGACATCTTCAAACGG
1 GTTCGCTCCCTCTTTCT-CTAGGGAGTATAGAACTCGGACATCTTCAAACGG
* * *
3801789 GTTCTCTCCCTCTTTCTCTAGGGAGTTTAGAACTCGGACATCTTCTTCAAATGG
1 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACA---TCTTCAAACGG
* ** * * *
3801843 GTTCGCTCCCTCTTTCT-TCAGGAAGTATAGAACTCCAATAACTTCACACGG
1 GTTCGCTCCCTCTTTCTCT-AGGGAGTATAGAACTCGGACATCTTCAAACGG
*
3801894 GTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGGACATCTTCAAACGG
1 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACATCTTCAAACGG
* *
3801945 GTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAACATCTTC
1 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACATCTTC
3801990 TTCCGCTTCA
Statistics
Matches: 1334, Mismatches: 175, Indels: 101
0.83 0.11 0.06
Matches are distributed among these distances:
50 63 0.05
51 638 0.48
52 89 0.07
53 29 0.02
54 513 0.38
55 2 0.00
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.32
Consensus pattern (51 bp):
GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACATCTTCAAACGG
Found at i:3801990 original size:156 final size:158
Alignment explanation
Indices: 3800379--3801992 Score: 1819
Period size: 156 Copynumber: 10.3 Consensus size: 158
3800369 TTTCAAATAA
* * * * *
3800379 GTTCGCTCCATCTTTCT-TCAGGAAGTATAGAACTCGAACA-ATCTTCAAACGGGCTCGCTCCCT
1 GTTCGCTCCCTCTTTCTCT-AGGGAGTATAGAACTCGGACATTTCTTCAAACGGGTTCGCTCCCT
*
3800442 CTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTTTAGG
65 CTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
*
3800507 AAGTATAGAACTCGAACAATCTTCAAACGG
130 AAGTATAGAACTCGGAC-ATCTTCAAACGG
* * * *
3800537 GTTCGCTCTCTTTTTCTCTAGGAAGTATGGAACTCGGACA--TCTTCAAACGGGTTCGCTCCCTC
1 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACATTTCTTCAAACGGGTTCGCTCCCTC
* *
3800600 TTTCTCTAGGGAGTATAGAACTCGGACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTTTAGGA
66 TTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGA
*
3800665 AGTATAGAACTCAGACATCTTCTTCAAACGG
131 AGTATAGAACTCGGACA---TCTTCAAACGG
* * * ** * * **
3800696 GTTCGCTCCCTCTTTTTC-AGGAAGTATAGAACTC-TA-ATAACTTCACACGAGTTTACTCCCTC
1 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACATTTCTTCAAACGGGTTCGCTCCCTC
* *
3800758 TTTCTTTAGGGAGTATGGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCT-TCAGG
66 TTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCT-AGG
** * * * *
3800822 AAGTATAGAACTCCAATAACTTCATACGA
130 AAGTATAGAACTCGGACATCTTCAAACGG
*
3800851 GTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGGACA--TCTTCAAACGGGTTCGCTCCCTC
1 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACATTTCTTCAAACGGGTTCGCTCCCTC
*
3800914 TTTCTCTAGGGAGTATAGAACTCGGACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCT-TCAGG
66 TTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCT-AGG
** * * *
3800978 AAGTATAGAACTCCAATAACTTCACACGG
130 AAGTATAGAACTCGGACATCTTCAAACGG
* *
3801007 GTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGGACA--TCTTCAAACGGGTTCGCTCCCTA
1 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACATTTCTTCAAACGGGTTCGCTCCCTC
* * * *
3801070 TTTCTCTAGGGAGTATGGAACTTGAACATCTTCTTCAAACGAGTTCGCTCCCTATTTCT-TCAGG
66 TTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCT-AGG
* *
3801134 AAGTATAGAATTCAGACATCTTCTTCAAACGG
130 AAGTATAGAACTCGGACA---TCTTCAAACGG
* * * * ** * *
3801166 GTTCACTCCCTCTTTCTTTAGGAAGTATAGAACTC-CA-ATAACTTCACACGGGTTTGCTCCCTC
1 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACATTTCTTCAAACGGGTTCGCTCCCTC
* * ** *
3801229 TTTCTCTAGGAAGTATTGAACTC-AA-AT-AACTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGG
66 TTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGA
*
3801291 AGTATGGAACTCGGACATCTTCAAACGG
131 AGTATAGAACTCGGACATCTTCAAACGG
** * **
3801319 GTTCGCTATCTCTTTCTCTAGGGAGTATAGAACTCGGACATCTTCTTCAAATGGGTTAACTCCCT
1 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACAT-TTCTTCAAACGGGTTCGCTCCCT
* * ** *
3801384 CTTTC-CTCAAGGAGTATAGAACTC-CA-AT-AACTTCACACGGGTTCGCTCCCTCTTTCTCTAG
65 CTTTCTCT-AGGGAGTATAGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCTAG
* * * *
3801445 GGAGTATGGAACTCAGACATCTTGAAACGG
129 GAAGTATAGAACTCGGACATCTTCAAACGG
* * *
3801475 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGTACTCGGACATCTTCTTCAAATGGGTTTGCTCCCT
1 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACAT-TTCTTCAAACGGGTTCGCTCCCT
*
3801540 CTTTCTCTAGGGAGTATAGAACTCGGACATCTTCTTCAAACGGGTTCGCTCCCTCTTTC-CTTAG
65 CTTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTC-TAG
* * *
3801604 GGAGTATAAAACTCGAACATCTTCTTCAAACGG
129 GAAGTATAGAACTCGGACA---TCTTCAAACGG
*
3801637 GTTCGCTCCCTCTTTCT-TCA--G-G-ATAGAACTCGGATATCTTCTTCAAACGGGTTCGCTCCC
1 GTTCGCTCCCTCTTTCTCT-AGGGAGTATAGAACTCGGACAT-TTCTTCAAACGGGTTCGCTCCC
* * ** *
3801697 TCTTTCT-TCAGGAAGTATAGAACTC-CA-AT-AACTTCACACGGGTTCGCTCCCTCTTT-TACT
64 TCTTTCTCT-AGGGAGTATAGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCT-CT
* * *
3801757 AGGGAGTATGGAACTCTGACATCTTCAAACGG
127 AGGAAGTATAGAACTCGGACATCTTCAAACGG
* * *
3801789 GTTCTCTCCCTCTTTCTCTAGGGAGTTTAGAACTCGGACATCTTCTTCAAATGGGTTCGCTCCCT
1 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACAT-TTCTTCAAACGGGTTCGCTCCCT
* * ** *
3801854 CTTTCT-TCAGGAAGTATAGAACTC-CA-AT-AACTTCACACGGGTTCGCTCCCTCTTTCTCTAG
65 CTTTCTCT-AGGGAGTATAGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCTAG
* *
3801915 GGAGTATGGAACTCGGACATCTTCAAACGG
129 GAAGTATAGAACTCGGACATCTTCAAACGG
* *
3801945 GTTCGCTCCCTCTTTCTCTAGGGAGTATGGAACTCGAACATCTTCTTC
1 GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACAT-TTCTTC
3801993 CGCTTCACTA
Statistics
Matches: 1288, Mismatches: 130, Indels: 78
0.86 0.09 0.05
Matches are distributed among these distances:
152 28 0.02
153 42 0.03
154 2 0.00
155 72 0.06
156 648 0.50
157 113 0.09
158 203 0.16
159 150 0.12
160 1 0.00
161 1 0.00
162 28 0.02
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.32
Consensus pattern (158 bp):
GTTCGCTCCCTCTTTCTCTAGGGAGTATAGAACTCGGACATTTCTTCAAACGGGTTCGCTCCCTC
TTTCTCTAGGGAGTATAGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGGA
AGTATAGAACTCGGACATCTTCAAACGG
Found at i:3803329 original size:16 final size:16
Alignment explanation
Indices: 3803272--3803331 Score: 57
Period size: 16 Copynumber: 3.6 Consensus size: 16
3803262 TCATGAACCC
*
3803272 TCATTTTCTTTCTTTTTT
1 TCATTTT-TTT-TGTTTT
*
3803290 TTATTCTTTTTTGTTTT
1 TCATT-TTTTTTGTTTT
**
3803307 TTGTTTTTTTTGTTTT
1 TCATTTTTTTTGTTTT
3803323 TCATTTTTT
1 TCATTTTTT
3803332 CATCTTCAGG
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
16 18 0.50
17 9 0.25
18 7 0.19
19 2 0.06
ACGTcount: A:0.05, C:0.08, G:0.05, T:0.82
Consensus pattern (16 bp):
TCATTTTTTTTGTTTT
Found at i:3804929 original size:88 final size:82
Alignment explanation
Indices: 3804767--3804936 Score: 286
Period size: 88 Copynumber: 2.0 Consensus size: 82
3804757 TTCTTCTTCG
3804767 AATTCTTCATGAGTTCCAGGACTAATTACGTATTCCACAAGCTTAGGCTTTTGTTTCCATTCTCC
1 AATTCTTCATGAGTTCCAGGACTAATTACGTATTCCACAAGCTTAGGCTTTTGTTTCCATTCTCC
3804832 TCTGAGTTGGTATATTA
66 TCTGAGTTGGTATATTA
3804849 AATTCTTCAATGAGTTCCAGGACTAATTTACGGTATTCCACAAGCTTAGGATCTTTTGTTTCCCA
1 AATTCTTC-ATGAGTTCCAGGACTAA-TTAC-GTATTCCACAAGCTTAGG--CTTTTGTTT-CCA
3804914 TTCTCCTCTGAGTTGGTATATTA
60 TTCTCCTCTGAGTTGGTATATTA
3804937 CCAAAGCTGA
Statistics
Matches: 82, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
82 8 0.10
83 17 0.21
84 4 0.05
85 18 0.22
87 9 0.11
88 26 0.32
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.40
Consensus pattern (82 bp):
AATTCTTCATGAGTTCCAGGACTAATTACGTATTCCACAAGCTTAGGCTTTTGTTTCCATTCTCC
TCTGAGTTGGTATATTA
Found at i:3806919 original size:2 final size:2
Alignment explanation
Indices: 3806906--3806947 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
3806896 ACGGAAGATA
*
3806906 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3806948 GGGAGAATCT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:3808128 original size:21 final size:21
Alignment explanation
Indices: 3808102--3808151 Score: 100
Period size: 21 Copynumber: 2.4 Consensus size: 21
3808092 GAACATCTTT
3808102 GGTCTTCACCCCGTTGAAAGA
1 GGTCTTCACCCCGTTGAAAGA
3808123 GGTCTTCACCCCGTTGAAAGA
1 GGTCTTCACCCCGTTGAAAGA
3808144 GGTCTTCA
1 GGTCTTCA
3808152 ATCAACTTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (21 bp):
GGTCTTCACCCCGTTGAAAGA
Found at i:3811212 original size:631 final size:632
Alignment explanation
Indices: 3809998--3811262 Score: 2387
Period size: 631 Copynumber: 2.0 Consensus size: 632
3809988 TACTATCTAA
3809998 AATAGATTAAAATACAAGCAAAATGCTAATGGATACGTGAATAGCACACATAATAAACATTGAAA
1 AATAGATTAAAATACAAGCAAAATGCTAATGGATACGTGAATAGCACACATAATAAACATTGAAA
3810063 CATAAATGAGGTAAATAGCACATTATCATCATTCAAGCCTAGGATGAACATACATCCGAAACTAA
66 CATAAATGAGGTAAATAGCACATTATCATCATTCAAGCCTAGGATGAACATACATCCGAAACTAA
3810128 CTCTAACTAACCGTACATGCATACACATAAAAAACTTAAATATGGATTAAAACGTAATGAACATT
131 CTCTAACTAACCGTACATGCATACACATAAAAAACTTAAATATGGATTAAAACGTAATGAACATT
3810193 AATTTAAGATTGAAACATAAATAAGGTAGAGACAAGAACACACACAACAAGCATGAAAATCGAAA
196 AATTTAAGATTGAAACATAAATAAGGTAGAGACAAGAACACACACAACAAGCATGAAAATCGAAA
3810258 ATGAATAATAATATATACCTCATGAAATTGTCATTCACCTTTTCAATTGCTTTCTTTTATTCCCG
261 ATGAATAATAATATATACCTCATGAAATTGTCATTCACCTTTTCAATTGCTTTCTTTTATTCCCG
** *
3810323 AATTACACTTGATTTCATCACTCATGAATACTCAACAAAATCGGGAATGGATGCCCGAAAATTTC
326 AATTACACTTGATTTCATCACTCATGAATACTCAACAAAATCGGGAATGGACACCCGAAAATTAC
* *
3810388 TTTTTTCTAACGATAAACAAATGGGAGATGAAAGTCCCTTTACATACTGTTTTTTCTGTTGAAAA
391 TTTTTTCTAACGATAAAAAAATGGGAGATGAAAGTCCCTTTACATACTATTTTTTCTGTTGAAAA
*
3810453 CCGAGAGCTCCTCCTTCCAATTCTGTGTAGGATCTGCTGCCAATGTTAATTGCTGCTGGTTCTCC
456 CCGAGAGCTCCTCCTTCCAATTCTGTGTAGGATCTGCCGCCAATGTTAATTGCTGCTGGTTCTCC
3810518 TTTTGGTGAATGGTCGCCCCTTTCCCGTGCTGTTCATGAACCTCTTCTCTCGTTGATGGCCAG-C
521 TTTTGGTGAATGGTCGCCCCTTTCCCGTGCTGTTCATGAACCTCTTCTCTCGTTGATGGCCAGCC
3810582 CCTATGCTAATTGCTGATCCCCTCTCTCTGTAGGATGTCCTCTCTTTAAG
586 CCTATGCTAATTGCTGAT-CCC-CTCTCTGTAGGATG-CCTCTCTTTAAG
*
3810632 AATAGA-TGAAATACAAGCAAAATGCTAATGGATACGTGAATAGCACACATAATAAACATTGAAA
1 AATAGATTAAAATACAAGCAAAATGCTAATGGATACGTGAATAGCACACATAATAAACATTGAAA
3810696 CATAAATGAGGTAAATAGCACATTATCATCATTCAAGCCTAGGATGAACATACATCCGAAACTAA
66 CATAAATGAGGTAAATAGCACATTATCATCATTCAAGCCTAGGATGAACATACATCCGAAACTAA
3810761 CTCTAACT-ACCGTACATGCATACACA-AAAAAACTTAAATATGGATTAAAACGTAATGAACATT
131 CTCTAACTAACCGTACATGCATACACATAAAAAACTTAAATATGGATTAAAACGTAATGAACATT
3810824 AATTTAAGATTGAAACATAAATAAGGTAGAGACAAGAACACACACAACAAGCATGAAAATCGAAA
196 AATTTAAGATTGAAACATAAATAAGGTAGAGACAAGAACACACACAACAAGCATGAAAATCGAAA
*
3810889 ATGAATAATAATATATACCTCATGAAATTGTCATTCGCCTTTTCAATTGCTTTCTTTTATTCCCG
261 ATGAATAATAATATATACCTCATGAAATTGTCATTCACCTTTTCAATTGCTTTCTTTTATTCCCG
3810954 AATTACACTTGATTTCATCACTCATGAATACTCAACAAAATCGGGAATGGACACCCGAAAATTAC
326 AATTACACTTGATTTCATCACTCATGAATACTCAACAAAATCGGGAATGGACACCCGAAAATTAC
3811019 TTTTTTCTAACGATAAAAAAATGGGAGATGAAAGTCCCTTTACATACTATTTTTTCTGTTGAAAA
391 TTTTTTCTAACGATAAAAAAATGGGAGATGAAAGTCCCTTTACATACTATTTTTTCTGTTGAAAA
3811084 CCGAGAGCTCCTCCTTCCAATTCTGTGTAGGATCTGCCGCCAATGTTAATTGCTGCTGGTTCTCC
456 CCGAGAGCTCCTCCTTCCAATTCTGTGTAGGATCTGCCGCCAATGTTAATTGCTGCTGGTTCTCC
3811149 TTTTGGTGAATGGT-GCCCCTTTTCCCGTGCTGTTCATGAACCTCTTCTCTCGTTGATGGCCAGC
521 TTTTGGTGAATGGTCGCCCC-TTTCCCGTGCTGTTCATGAACCTCTTCTCTCGTTGATGGCCAGC
3811213 CCCTATGCTAATTGCTGATCCCCTCTCTGTAGGATGCCTCTCTTTAAG
585 CCCTATGCTAATTGCTGATCCCCTCTCTGTAGGATGCCTCTCTTTAAG
3811261 AA
1 AA
3811263 ATATGAACAA
Statistics
Matches: 621, Mismatches: 8, Indels: 9
0.97 0.01 0.01
Matches are distributed among these distances:
629 14 0.02
630 19 0.03
631 415 0.67
632 37 0.06
633 130 0.21
634 6 0.01
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.30
Consensus pattern (632 bp):
AATAGATTAAAATACAAGCAAAATGCTAATGGATACGTGAATAGCACACATAATAAACATTGAAA
CATAAATGAGGTAAATAGCACATTATCATCATTCAAGCCTAGGATGAACATACATCCGAAACTAA
CTCTAACTAACCGTACATGCATACACATAAAAAACTTAAATATGGATTAAAACGTAATGAACATT
AATTTAAGATTGAAACATAAATAAGGTAGAGACAAGAACACACACAACAAGCATGAAAATCGAAA
ATGAATAATAATATATACCTCATGAAATTGTCATTCACCTTTTCAATTGCTTTCTTTTATTCCCG
AATTACACTTGATTTCATCACTCATGAATACTCAACAAAATCGGGAATGGACACCCGAAAATTAC
TTTTTTCTAACGATAAAAAAATGGGAGATGAAAGTCCCTTTACATACTATTTTTTCTGTTGAAAA
CCGAGAGCTCCTCCTTCCAATTCTGTGTAGGATCTGCCGCCAATGTTAATTGCTGCTGGTTCTCC
TTTTGGTGAATGGTCGCCCCTTTCCCGTGCTGTTCATGAACCTCTTCTCTCGTTGATGGCCAGCC
CCTATGCTAATTGCTGATCCCCTCTCTGTAGGATGCCTCTCTTTAAG
Found at i:3811974 original size:3 final size:3
Alignment explanation
Indices: 3811968--3812009 Score: 70
Period size: 3 Copynumber: 14.7 Consensus size: 3
3811958 ATATTATTAT
3811968 TAA TAA T-A TAA TAA T-A TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
3812010 TCCCGGACAA
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
2 4 0.11
3 33 0.89
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:3816132 original size:20 final size:20
Alignment explanation
Indices: 3816107--3816161 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
3816097 TTGACAGAGG
*
3816107 TATCGATACCTTAAGGGTGA
1 TATCGATACCTTAAGGATGA
* *
3816127 TATCGATACCTAAAGGATGG
1 TATCGATACCTTAAGGATGA
3816147 TATCGATACCCTTAA
1 TATCGATA-CCTTAA
3816162 AACATCGAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 25 0.83
21 5 0.17
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (20 bp):
TATCGATACCTTAAGGATGA
Found at i:3816851 original size:23 final size:22
Alignment explanation
Indices: 3816813--3816903 Score: 91
Period size: 23 Copynumber: 4.2 Consensus size: 22
3816803 TCCTCCGAGA
* *
3816813 CAAA-TATGTGGTACTTTGGTG
1 CAAACTATGTGGCACTTCGGTG
*
3816834 CAACCCTATGTGGCACTTCGGTG
1 CAA-ACTATGTGGCACTTCGGTG
3816857 CAAACTATGTGGTCA-TTCGG-G
1 CAAACTATGTGG-CACTTCGGTG
*
3816878 -ATAATTATGTGGCACTTCGGTG
1 CA-AACTATGTGGCACTTCGGTG
3816900 CAAA
1 CAAA
3816904 TTACGAGTTG
Statistics
Matches: 58, Mismatches: 5, Indels: 13
0.76 0.07 0.17
Matches are distributed among these distances:
20 3 0.05
21 18 0.31
22 16 0.28
23 21 0.36
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (22 bp):
CAAACTATGTGGCACTTCGGTG
Found at i:3833603 original size:20 final size:20
Alignment explanation
Indices: 3833557--3833603 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
3833547 ATTGAAGGGA
*
3833557 AATGAACTAAGAAATGAATG
1 AATGAATTAAGAAATGAATG
3833577 AATGAATTAAGAAATGAATG
1 AATGAATTAAGAAATGAATG
3833597 AATGAAT
1 AATGAAT
3833604 ATGTTGCCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.55, C:0.02, G:0.19, T:0.23
Consensus pattern (20 bp):
AATGAATTAAGAAATGAATG
Found at i:3838164 original size:17 final size:19
Alignment explanation
Indices: 3838119--3838165 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
3838109 TTGAAACAAC
3838119 AAATAATAAAAATAGTAAAA
1 AAAT-ATAAAAATAGTAAAA
**
3838139 AAACCTAAAAA-A-TAAAA
1 AAATATAAAAATAGTAAAA
3838156 AAATATAAAA
1 AAATATAAAA
3838166 TAAATACAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
17 13 0.57
18 1 0.04
19 6 0.26
20 3 0.13
ACGTcount: A:0.77, C:0.04, G:0.02, T:0.17
Consensus pattern (19 bp):
AAATATAAAAATAGTAAAA
Found at i:3838947 original size:2 final size:2
Alignment explanation
Indices: 3838940--3838983 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
3838930 TTACATTCGA
3838940 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3838982 AT
1 AT
3838984 GTATGTTAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3842429 original size:4 final size:4
Alignment explanation
Indices: 3842420--3842446 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
3842410 ATGTTAGAAG
3842420 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
3842447 AAGAAAAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:3842544 original size:5 final size:5
Alignment explanation
Indices: 3842534--3842574 Score: 55
Period size: 5 Copynumber: 7.8 Consensus size: 5
3842524 AACAATGGAA
*
3842534 AAAAT AAAAT AAAAT AAAAT AAAAAAC AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT --AAAAT AAAAT AAAAT AAAA
3842575 AAGTAAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 28 0.88
7 4 0.12
ACGTcount: A:0.83, C:0.02, G:0.00, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:3842552 original size:17 final size:17
Alignment explanation
Indices: 3842539--3842582 Score: 70
Period size: 17 Copynumber: 2.5 Consensus size: 17
3842529 TGGAAAAAAT
3842539 AAAATAAAATAAAATAA
1 AAAATAAAATAAAATAA
*
3842556 AAAACAAAATAAAATAA
1 AAAATAAAATAAAATAA
3842573 AAAAGTAAAA
1 AAAA-TAAAA
3842583 AACGAAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 20 0.83
18 4 0.17
ACGTcount: A:0.82, C:0.02, G:0.02, T:0.14
Consensus pattern (17 bp):
AAAATAAAATAAAATAA
Found at i:3842590 original size:25 final size:27
Alignment explanation
Indices: 3842534--3842595 Score: 92
Period size: 25 Copynumber: 2.4 Consensus size: 27
3842524 AACAATGGAA
3842534 AAAATAAAATAAAATAAAATAAAAAAC
1 AAAATAAAATAAAATAAAATAAAAAAC
*
3842561 AAAATAAAAT-AAA-AAAGTAAAAAAC
1 AAAATAAAATAAAATAAAATAAAAAAC
*
3842586 GAAATAAAAT
1 AAAATAAAAT
3842596 GGAAAGGGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
25 20 0.61
26 3 0.09
27 10 0.30
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.15
Consensus pattern (27 bp):
AAAATAAAATAAAATAAAATAAAAAAC
Found at i:3842607 original size:25 final size:25
Alignment explanation
Indices: 3842505--3842609 Score: 76
Period size: 25 Copynumber: 4.3 Consensus size: 25
3842495 TAAATTTGGT
*
3842505 GAAAAGAA-AAAAGAAAA-AAAACAATG
1 GAAAA-AACAAAATAAAATAAAA-AA-G
*
3842531 GAAAAAATAAAATAAAAT--AAAA-
1 GAAAAAACAAAATAAAATAAAAAAG
*
3842553 TAAAAAACAAAATAAAATAAAAAAG
1 GAAAAAACAAAATAAAATAAAAAAG
* * ** *
3842578 TAAAAAACGAAATAAAATGGAAAGG
1 GAAAAAACAAAATAAAATAAAAAAG
3842603 GAAAAAA
1 GAAAAAA
3842610 GAAGAAATAA
Statistics
Matches: 66, Mismatches: 8, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
22 16 0.24
24 6 0.09
25 31 0.47
26 13 0.20
ACGTcount: A:0.76, C:0.03, G:0.11, T:0.10
Consensus pattern (25 bp):
GAAAAAACAAAATAAAATAAAAAAG
Found at i:3843914 original size:62 final size:63
Alignment explanation
Indices: 3843846--3844000 Score: 222
Period size: 64 Copynumber: 2.4 Consensus size: 63
3843836 AATATATATA
* * *
3843846 TATATATATATATAAAGTATTTTCAAAAACATATAATATATAA-TTTCAAAATTCTTTTAAAAAC
1 TATATA-ATATATAAA-TGTTTTCAAAAACATATAATATATAAGTTTCAAAAATATTTTAAAAAC
** *
3843910 TATATAATATATAAATGTTTTCAAAATTATATATTATATAAGTTTTCAAAAATATTTTAAAAAC
1 TATATAATATATAAATGTTTTCAAAAACATATAATATATAAG-TTTCAAAAATATTTTAAAAAC
3843974 TATATAATATATAAATGTTTTCAAAAA
1 TATATAATATATAAATGTTTTCAAAAA
3844001 TATTTTCAAA
Statistics
Matches: 82, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
62 22 0.27
63 9 0.11
64 51 0.62
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.42
Consensus pattern (63 bp):
TATATAATATATAAATGTTTTCAAAAACATATAATATATAAGTTTCAAAAATATTTTAAAAAC
Found at i:3843921 original size:35 final size:34
Alignment explanation
Indices: 3843865--3844209 Score: 220
Period size: 37 Copynumber: 9.7 Consensus size: 34
3843855 ATATAAAGTA
*
3843865 TTTTCAAAAAC-ATATAATATATAATTTCAAAAT
1 TTTTTAAAAACTATATAATATATAATTTCAAAAT
3843898 TCTTTTAAAAACTATAT-A-ATAT-A--T--AAAT
1 T-TTTTAAAAACTATATAATATATAATTTCAAAAT
* * * *
3843926 GTTTTCAAAATTATATATTATATAAGTTTTCAAAAAT
1 TTTTTAAAAACTATATAATATATAA--TTTC-AAAAT
*
3843963 ATTTTAAAAACTATATAATATATAAATGTTTTCAAAAAT
1 TTTTTAAAAACTATATAATATAT-AA---TTTC-AAAAT
* * * *
3844002 ATTTTCAAAACTATAAAATATATATGTTTTCACAAAT
1 TTTTTAAAAACTATATAATATATA--ATTTCA-AAAT
* * *
3844039 GTTTTCAAAAACTATATATTATATATATTTTAAAAAT
1 -TTTTTAAAAACTATATA--ATATATAATTTCAAAAT
* * *
3844076 GTTTTAAAAAACTATATATTATATATTTTCAAAAT
1 -TTTTTAAAAACTATATAATATATAATTTCAAAAT
* *
3844111 GATTTTAAAAACTATATATTATATATATTTTCAAAAT
1 -TTTTTAAAAACTATATA--ATATATAATTTCAAAAT
*
3844148 GTTTTTAAAAACTATATAATATATAAATGTTTTCAAAAC
1 -TTTTTAAAAACTATATAATATAT-AA---TTTCAAAAT
* * *
3844187 GTTTTCAAAACTATATATTATAT
1 TTTTTAAAAACTATATAATATAT
3844210 TTTGTCAAAA
Statistics
Matches: 257, Mismatches: 29, Indels: 47
0.77 0.09 0.14
Matches are distributed among these distances:
27 13 0.05
28 4 0.02
29 4 0.02
30 2 0.01
32 1 0.00
33 5 0.02
34 11 0.04
35 41 0.16
36 2 0.01
37 85 0.33
38 41 0.16
39 41 0.16
40 7 0.03
ACGTcount: A:0.47, C:0.07, G:0.03, T:0.43
Consensus pattern (34 bp):
TTTTTAAAAACTATATAATATATAATTTCAAAAT
Found at i:3843940 original size:27 final size:25
Alignment explanation
Indices: 3843900--3843960 Score: 77
Period size: 27 Copynumber: 2.4 Consensus size: 25
3843890 TTCAAAATTC
*
3843900 TTTTAAAAACTATATAATATATAAATG
1 TTTTCAAAACTATATAATATAT-AA-G
* *
3843927 TTTTCAAAATTATATATTATATAAG
1 TTTTCAAAACTATATAATATATAAG
3843952 TTTTCAAAA
1 TTTTCAAAA
3843961 ATATTTTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
25 10 0.32
26 2 0.06
27 19 0.61
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (25 bp):
TTTTCAAAACTATATAATATATAAG
Found at i:3843947 original size:25 final size:27
Alignment explanation
Indices: 3843900--3843960 Score: 74
Period size: 25 Copynumber: 2.3 Consensus size: 27
3843890 TTCAAAATTC
*
3843900 TTTTAAAAACTATATAATATATA-AATG
1 TTTTCAAAACTATATAATATATATAA-G
*
3843927 TTTTCAAAATTATAT-AT-TATATAAG
1 TTTTCAAAACTATATAATATATATAAG
3843952 TTTTCAAAA
1 TTTTCAAAA
3843961 ATATTTTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 14 0.45
26 4 0.13
27 13 0.42
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (27 bp):
TTTTCAAAACTATATAATATATATAAG
Found at i:3843987 original size:37 final size:37
Alignment explanation
Indices: 3843922--3844247 Score: 269
Period size: 37 Copynumber: 8.8 Consensus size: 37
3843912 TATAATATAT
* * * *
3843922 AAATGTTTTCAAAATTATATATTATATAAGTTTTCAA
1 AAATATTTTAAAAACTATATAATATATAAGTTTTCAA
3843959 AAATATTTTAAAAACTATATAATATATAAATGTTTTCAA
1 AAATATTTTAAAAACTATATAATATAT-AA-GTTTTCAA
* * * *
3843998 AAATATTTTCAAAACTATAAAATATATATGTTTTCAC
1 AAATATTTTAAAAACTATATAATATATAAGTTTTCAA
* *
3844035 AAATGTTTTCAAAAACTATATATTATATATA-TTTT-AA
1 AAATATTTT-AAAAACTATATAATATATA-AGTTTTCAA
* *
3844072 AAATGTTTTAAAAAACTATATATTATAT-A-TTTTC-A
1 AAATATTTT-AAAAACTATATAATATATAAGTTTTCAA
*
3844107 AAATGATTTTAAAAACTATATATTATATATA-TTTTC-A
1 AAAT-ATTTTAAAAACTATATAATATATA-AGTTTTCAA
*
3844144 AAATGTTTTTAAAAACTATATAATATATAAATGTTTTC-A
1 AAAT-ATTTTAAAAACTATATAATATAT-AA-GTTTTCAA
** * *
3844183 AAACGTTTTCAAAACTATAT-AT-TAT-ATTTTGTCAA
1 AAATATTTTAAAAACTATATAATATATAAGTTT-TCAA
* **
3844218 AAACATTTTCAAAAGTTATATATATATATA
1 AAATATTTT-AAAAACTATATA-ATATATA
3844248 TATATATATA
Statistics
Matches: 245, Mismatches: 26, Indels: 33
0.81 0.09 0.11
Matches are distributed among these distances:
33 3 0.01
34 3 0.01
35 37 0.15
36 15 0.06
37 102 0.42
38 40 0.16
39 45 0.18
ACGTcount: A:0.46, C:0.07, G:0.04, T:0.44
Consensus pattern (37 bp):
AAATATTTTAAAAACTATATAATATATAAGTTTTCAA
Found at i:3844002 original size:39 final size:39
Alignment explanation
Indices: 3843922--3844209 Score: 284
Period size: 37 Copynumber: 7.7 Consensus size: 39
3843912 TATAATATAT
* * *
3843922 AAATGTTTTCAAAATTATATATTATAT-AA-GTTTTCAA
1 AAATGTTTTAAAAACTATATAATATATAAATGTTTTCAA
*
3843959 AAATATTTTAAAAACTATATAATATATAAATGTTTTCAA
1 AAATGTTTTAAAAACTATATAATATATAAATGTTTTCAA
* * * *
3843998 AAATATTTTCAAAACTATA-AA-ATATATATGTTTTCAC
1 AAATGTTTTAAAAACTATATAATATATAAATGTTTTCAA
* *
3844035 AAATGTTTTCAAAAACTATAT-AT-TATATATATTTT-AA
1 AAATGTTTT-AAAAACTATATAATATATAAATGTTTTCAA
*
3844072 AAATGTTTTAAAAAACTATAT-AT-TAT--ATATTTTC-A
1 AAATGTTTT-AAAAACTATATAATATATAAATGTTTTCAA
* *
3844107 AAATGATTTTAAAAACTATAT-AT-TATATATATTTTC-A
1 AAATG-TTTTAAAAACTATATAATATATAAATGTTTTCAA
3844144 AAATGTTTTTAAAAACTATATAATATATAAATGTTTTC-A
1 AAATG-TTTTAAAAACTATATAATATATAAATGTTTTCAA
* * *
3844183 AAACGTTTTCAAAACTATATATTATAT
1 AAATGTTTTAAAAACTATATAATATAT
3844210 TTTGTCAAAA
Statistics
Matches: 222, Mismatches: 18, Indels: 21
0.85 0.07 0.08
Matches are distributed among these distances:
35 29 0.13
36 4 0.02
37 100 0.45
38 47 0.21
39 42 0.19
ACGTcount: A:0.46, C:0.07, G:0.03, T:0.44
Consensus pattern (39 bp):
AAATGTTTTAAAAACTATATAATATATAAATGTTTTCAA
Found at i:3844241 original size:2 final size:2
Alignment explanation
Indices: 3844234--3844305 Score: 144
Period size: 2 Copynumber: 36.0 Consensus size: 2
3844224 TTTCAAAAGT
3844234 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3844276 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3844306 AACAAAATAG
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 70 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:3845128 original size:22 final size:22
Alignment explanation
Indices: 3845103--3845148 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
3845093 CTCGTATAAA
*
3845103 TGCACCGAAGTGCCCTTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
3845125 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
3845147 TG
1 TG
3845149 TCCATAAGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.22
Consensus pattern (22 bp):
TGCACCGAAGTGCCCGTAGAAT
Found at i:3845404 original size:30 final size:30
Alignment explanation
Indices: 3845359--3845417 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
3845349 ATCGCGTAGT
* *
3845359 CATATTATTTCCATACCTTTATCACATAGA
1 CATATCATTTACATACCTTTATCACATAGA
3845389 CATATCATTTACATACCTTTATCACATAG
1 CATATCATTTACATACCTTTATCACATAG
3845418 CTCATATAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.34, C:0.24, G:0.03, T:0.39
Consensus pattern (30 bp):
CATATCATTTACATACCTTTATCACATAGA
Found at i:3845934 original size:67 final size:69
Alignment explanation
Indices: 3845784--3845936 Score: 220
Period size: 68 Copynumber: 2.2 Consensus size: 69
3845774 TTTTTCTCAT
* * *
3845784 GGGGGAATCGGTTCCCCCCCTTAGGGGTATCGATTCCCCTCAAGCAATCTGGAATTTCATATACG
1 GGGGGTATCGGTTCCCCCCCTTAGGGGTACCGATTCCCCTCAAGCAATCTGGAAATTCATATACG
3845849 ATGA
66 ATGA
* * * *
3845853 GGGGGTATCGGTTCCCCCCC-TGGGGGTACCGATTCCCCTCTAGCATTCTGGAAATTCAT-TTCG
1 GGGGGTATCGGTTCCCCCCCTTAGGGGTACCGATTCCCCTCAAGCAATCTGGAAATTCATATACG
*
3845916 TTGA
66 ATGA
3845920 GGGGGTATCGGTTCCCC
1 GGGGGTATCGGTTCCCC
3845937 TTGAATGGGT
Statistics
Matches: 76, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
67 23 0.30
68 34 0.45
69 19 0.25
ACGTcount: A:0.18, C:0.27, G:0.27, T:0.27
Consensus pattern (69 bp):
GGGGGTATCGGTTCCCCCCCTTAGGGGTACCGATTCCCCTCAAGCAATCTGGAAATTCATATACG
ATGA
Done.