Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008719.1 Hibiscus syriacus cultivar Beakdansim tig00111774_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4817204
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 17 of 18
Found at i:4419136 original size:15 final size:16
Alignment explanation
Indices: 4419110--4419139 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
4419100 TATACTTCTT
4419110 ATTTATTTATTTTTAA
1 ATTTATTTATTTTTAA
4419126 ATTTA-TTATTTTTA
1 ATTTATTTATTTTTA
4419140 TCCCATGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
ATTTATTTATTTTTAA
Found at i:4425390 original size:14 final size:15
Alignment explanation
Indices: 4425365--4425393 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
4425355 TAATAAATAT
4425365 AATAATATTTTAAAA
1 AATAATATTTTAAAA
4425380 AATAA-ATTTTAAAA
1 AATAATATTTTAAAA
4425394 TTAAAAGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
AATAATATTTTAAAA
Found at i:4430473 original size:24 final size:24
Alignment explanation
Indices: 4430372--4430475 Score: 88
Period size: 24 Copynumber: 4.3 Consensus size: 24
4430362 GAGATATCAA
* *
4430372 AAATCA-AAACAGAATTCAAATAAG
1 AAATCAGAAA-AGAATTCAAGTCAG
* *
4430396 ATATCAGAACAGAATTC-AGATCAG
1 AAATCAGAAAAGAATTCAAG-TCAG
* * *
4430420 AAATCATAACAGAATCCAAGTCATG
1 AAATCAGAAAAGAATTCAAGTCA-G
*
4430445 -TATCAGAAAAGAATTCAAGTCAG
1 AAATCAGAAAAGAATTCAAGTCAG
4430468 AAATCAGA
1 AAATCAGA
4430476 TAAAATATTT
Statistics
Matches: 63, Mismatches: 12, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
23 2 0.03
24 56 0.89
25 5 0.08
ACGTcount: A:0.52, C:0.15, G:0.13, T:0.19
Consensus pattern (24 bp):
AAATCAGAAAAGAATTCAAGTCAG
Found at i:4434138 original size:21 final size:21
Alignment explanation
Indices: 4434089--4434139 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
4434079 TATGACTATT
4434089 GCAATGCGATTTTCCAATTTC
1 GCAATGCGATTTTCCAATTTC
**
4434110 GCGTTGCGATTTTCCCAA-TTC
1 GCAATGCGATTTT-CCAATTTC
4434131 GCAATGCGA
1 GCAATGCGA
4434140 ATAAGTAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 21 0.84
22 4 0.16
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (21 bp):
GCAATGCGATTTTCCAATTTC
Found at i:4434154 original size:20 final size:21
Alignment explanation
Indices: 4434129--4434180 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
4434119 TTTTCCCAAT
*
4434129 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
**
4434149 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTAAGAAAA
4434170 TCGCAATGCGA
1 TCGCAATGCGA
4434181 TACTGACTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.21
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:4434194 original size:20 final size:20
Alignment explanation
Indices: 4434170--4434316 Score: 172
Period size: 20 Copynumber: 7.3 Consensus size: 20
4434160 ATTTGGAAAA
* *
4434170 TCGCAATGCGATACTGACTA
1 TCGCAACGCGATACTGACTT
* **
4434190 TCGCAACGCGATAAT-ACAAAA
1 TCGCAACGCGATACTGAC--TT
4434211 TCGCAACGCGATACTGACTT
1 TCGCAACGCGATACTGACTT
4434231 TCGCAACGCGATACTGACTT
1 TCGCAACGCGATACTGACTT
*
4434251 TCGCAACGCGATTCTGACTT
1 TCGCAACGCGATACTGACTT
* *
4434271 TCGCAACGAGATTCTGACTT
1 TCGCAACGCGATACTGACTT
*
4434291 TCGCAACGAGATTA-TGACTT
1 TCGCAACGCGA-TACTGACTT
4434311 TCGCAA
1 TCGCAA
4434317 TGAGATAATA
Statistics
Matches: 114, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
19 2 0.02
20 94 0.82
21 16 0.14
22 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (20 bp):
TCGCAACGCGATACTGACTT
Found at i:4434242 original size:41 final size:41
Alignment explanation
Indices: 4434167--4434343 Score: 157
Period size: 40 Copynumber: 4.4 Consensus size: 41
4434157 CGAATTTGGA
* * *
4434167 AAATCGCAATGCGATACTGACTATCGCAACGCGATAAT-AC
1 AAATCGCAACGCGATACTGACTTTCGCAACGAGATAATGAC
* *
4434207 AAAATCGCAACGCGATACTGACTTTCGCAACGCGATACTGAC
1 -AAATCGCAACGCGATACTGACTTTCGCAACGAGATAATGAC
** * **
4434249 -TTTCGCAACGCGATTCTGACTTTCGCAACGAGATTCTGAC
1 AAATCGCAACGCGATACTGACTTTCGCAACGAGATAATGAC
** * *
4434289 -TTTCGCAACGAGATTA-TGACTTTCGCAATGAGATAAT-AC
1 AAATCGCAACGCGA-TACTGACTTTCGCAACGAGATAATGAC
*
4434328 AGAATCGCAATGCGAT
1 A-AATCGCAACGCGAT
4434344 TTTCAAAGTT
Statistics
Matches: 115, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
39 2 0.02
40 66 0.57
41 45 0.39
42 2 0.02
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.24
Consensus pattern (41 bp):
AAATCGCAACGCGATACTGACTTTCGCAACGAGATAATGAC
Found at i:4434496 original size:12 final size:12
Alignment explanation
Indices: 4434477--4434510 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
4434467 CTCTCCGGCG
4434477 ACATCCGTTCCT
1 ACATCCGTTCCT
*
4434489 ATATCCGTTCCT
1 ACATCCGTTCCT
4434501 ACATCC-TTCC
1 ACATCCGTTCC
4434511 CCATCCGGCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 4 0.20
12 16 0.80
ACGTcount: A:0.18, C:0.41, G:0.06, T:0.35
Consensus pattern (12 bp):
ACATCCGTTCCT
Found at i:4435116 original size:24 final size:24
Alignment explanation
Indices: 4435065--4435118 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
4435055 ATATTCGAAA
* * *
4435065 TTTGATCTTGGTCAATACCCGGGC
1 TTTGATATTGGTCAATACCCAGAC
* *
4435089 TTTGATATTGGTCAATACTCAGAT
1 TTTGATATTGGTCAATACCCAGAC
4435113 TTTGAT
1 TTTGAT
4435119 GATGTTTCAG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATATTGGTCAATACCCAGAC
Found at i:4437553 original size:19 final size:20
Alignment explanation
Indices: 4437511--4437554 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
4437501 CAATCATCTT
*
4437511 AATGTCTATCGCAACGCGGA
1 AATGACTATCGCAACGCGGA
*
4437531 AATGACTATCGCAATGC-GA
1 AATGACTATCGCAACGCGGA
4437550 AATGA
1 AATGA
4437555 AAATCACAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (20 bp):
AATGACTATCGCAACGCGGA
Found at i:4437588 original size:33 final size:33
Alignment explanation
Indices: 4437538--4437664 Score: 191
Period size: 33 Copynumber: 3.8 Consensus size: 33
4437528 GGAAATGACT
* *
4437538 ATCGCAATGCGAAATGAAAATCACAACGAGAGA
1 ATCGCAAAGCGAAATGAAAATCGCAACGAGAGA
* * *
4437571 ATCACAACGCGAAATGAAAATCGCAACGAGATA
1 ATCGCAAAGCGAAATGAAAATCGCAACGAGAGA
*
4437604 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAAAGCGAAATGAAAATCGCAACGAGAGA
*
4437637 ATCGCAAAGCAAAATGAAAATCGCAACG
1 ATCGCAAAGCGAAATGAAAATCGCAACG
4437665 CGAAAAGAAA
Statistics
Matches: 85, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 85 1.00
ACGTcount: A:0.48, C:0.20, G:0.20, T:0.12
Consensus pattern (33 bp):
ATCGCAAAGCGAAATGAAAATCGCAACGAGAGA
Found at i:4437597 original size:19 final size:19
Alignment explanation
Indices: 4437518--4437687 Score: 109
Period size: 19 Copynumber: 9.7 Consensus size: 19
4437508 CTTAATGTCT
**
4437518 ATCGCAACGCGGAAATGACT
1 ATCGCAACGC-GAAATGAAA
*
4437538 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGAAA
* *
4437557 ATCACAA--CG--A-GAGA
1 ATCGCAACGCGAAATGAAA
*
4437571 ATCACAACGCGAAATGAAA
1 ATCGCAACGCGAAATGAAA
*
4437590 ATCGCAA--CG--A-GATA
1 ATCGCAACGCGAAATGAAA
*
4437604 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGAAA
*
4437623 ATCGCAA--CG--A-GAGA
1 ATCGCAACGCGAAATGAAA
* *
4437637 ATCGCAAAGCAAAATGAAA
1 ATCGCAACGCGAAATGAAA
*
4437656 ATCGCAACGCGAAAAGAAA
1 ATCGCAACGCGAAATGAAA
*
4437675 ATCACAACGCGAA
1 ATCGCAACGCGAA
4437688 TTTAGTTTCG
Statistics
Matches: 119, Mismatches: 16, Indels: 31
0.72 0.10 0.19
Matches are distributed among these distances:
14 30 0.25
15 3 0.03
16 5 0.04
17 6 0.05
18 3 0.03
19 63 0.53
20 9 0.08
ACGTcount: A:0.48, C:0.21, G:0.21, T:0.11
Consensus pattern (19 bp):
ATCGCAACGCGAAATGAAA
Found at i:4437608 original size:14 final size:14
Alignment explanation
Indices: 4437586--4437643 Score: 53
Period size: 14 Copynumber: 3.8 Consensus size: 14
4437576 AACGCGAAAT
4437586 GAAAATCGCAACGA
1 GAAAATCGCAACGA
*
4437600 GATAATCGCAATGCGAAA
1 GAAAATCGCAA--CG--A
4437618 TGAAAATCGCAACGA
1 -GAAAATCGCAACGA
*
4437633 GAGAATCGCAA
1 GAAAATCGCAA
4437644 AGCAAAATGA
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
14 20 0.56
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.28
ACGTcount: A:0.47, C:0.19, G:0.22, T:0.12
Consensus pattern (14 bp):
GAAAATCGCAACGA
Found at i:4437620 original size:66 final size:66
Alignment explanation
Indices: 4437538--4437664 Score: 218
Period size: 66 Copynumber: 1.9 Consensus size: 66
4437528 GGAAATGACT
* *
4437538 ATCGCAATGCGAAATGAAAATCACAACGAGAGAATCACAACGCGAAATGAAAATCGCAACGAGAT
1 ATCGCAATGCGAAATGAAAATCACAACGAGAGAATCACAAAGCAAAATGAAAATCGCAACGAGAT
4437603 A
66 A
* *
4437604 ATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAAAGCAAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCACAACGAGAGAATCACAAAGCAAAATGAAAATCGCAACG
4437665 CGAAAAGAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 57 1.00
ACGTcount: A:0.48, C:0.20, G:0.20, T:0.12
Consensus pattern (66 bp):
ATCGCAATGCGAAATGAAAATCACAACGAGAGAATCACAAAGCAAAATGAAAATCGCAACGAGAT
A
Found at i:4437631 original size:52 final size:51
Alignment explanation
Indices: 4437570--4437687 Score: 123
Period size: 52 Copynumber: 2.3 Consensus size: 51
4437560 ACAACGAGAG
* * * *
4437570 AATCACAACGCGAAAT-GAAAATCGCAACGA-GATAATCGCAATGCGAAATGAA
1 AATCACAACGCGAAATCGAAAA--GCAA-AATGAAAATCGCAACGCGAAAAGAA
* * *
4437622 AATCGCAACGAGAGAATCGCAAAGCAAAATGAAAATCGCAACGCGAAAAGAA
1 AATCACAACGCGA-AATCGAAAAGCAAAATGAAAATCGCAACGCGAAAAGAA
4437674 AATCACAACGCGAA
1 AATCACAACGCGAA
4437688 TTTAGTTTCG
Statistics
Matches: 54, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
51 2 0.04
52 45 0.83
53 3 0.06
54 4 0.07
ACGTcount: A:0.50, C:0.20, G:0.19, T:0.10
Consensus pattern (51 bp):
AATCACAACGCGAAATCGAAAAGCAAAATGAAAATCGCAACGCGAAAAGAA
Found at i:4437863 original size:14 final size:14
Alignment explanation
Indices: 4437846--4437882 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
4437836 CATCAATTAA
4437846 ACAAATCAAATTTT
1 ACAAATCAAATTTT
**
4437860 ACAAATCATCTTTT
1 ACAAATCAAATTTT
4437874 ACAAATCAA
1 ACAAATCAA
4437883 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.19, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAAATTTT
Found at i:4439299 original size:21 final size:21
Alignment explanation
Indices: 4439233--4439299 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
4439223 GTGAATCGGG
*
4439233 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAACGGTGGGAGGGGA
* * ** * *
4439253 CCTCTTCAACGATGACAGTGGC
1 -CTCTTGAACGGTGGGAGGGGA
4439275 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGA
4439296 CTCT
1 CTCT
4439300 CGAGGAATGA
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 30 0.94
22 2 0.06
ACGTcount: A:0.19, C:0.21, G:0.36, T:0.24
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGA
Found at i:4439318 original size:42 final size:41
Alignment explanation
Indices: 4439233--4439355 Score: 113
Period size: 42 Copynumber: 2.9 Consensus size: 41
4439223 GTGAATCGGG
* * * *
4439233 CTCTTGAATGGTGGGA-GGGACCTCTTCAACGATGACAGTGGC
1 CTCTTGAACGGTGGGAGGGGA-CTC-TCGAGGATGACAGGGGC
*
4439275 CTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGAGGGGACTCTCGAGG-ATGACAGGGGC
* * * * *
4439317 CTCTTCAACGATAGGAGTGGACTCTTGAGGGATGACAGG
1 CTCTTGAACGGTGGGAGGGGACTCTCGA-GGATGACAGG
4439356 CGAGTCAGGC
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
41 4 0.06
42 57 0.85
43 6 0.09
ACGTcount: A:0.23, C:0.19, G:0.37, T:0.22
Consensus pattern (41 bp):
CTCTTGAACGGTGGGAGGGGACTCTCGAGGATGACAGGGGC
Found at i:4439727 original size:20 final size:20
Alignment explanation
Indices: 4439702--4439740 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
4439692 AAAGAATAGT
4439702 TTACTTTCGCAACACGAAAC
1 TTACTTTCGCAACACGAAAC
*
4439722 TTACTTTCGCAACGCGAAA
1 TTACTTTCGCAACACGAAA
4439741 ATGGCTATCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (20 bp):
TTACTTTCGCAACACGAAAC
Found at i:4439763 original size:19 final size:19
Alignment explanation
Indices: 4439728--4439781 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
4439718 AAACTTACTT
4439728 TCGCAACGCGAAAATGGCTA
1 TCGCAACGCG-AAATGGCTA
4439748 TCGCAACGCGAAATGGCTA
1 TCGCAACGCGAAATGGCTA
*
4439767 TCGCAATGCGAAATG
1 TCGCAACGCGAAATG
4439782 AAAATCGCAA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 23 0.70
20 10 0.30
ACGTcount: A:0.33, C:0.24, G:0.26, T:0.17
Consensus pattern (19 bp):
TCGCAACGCGAAATGGCTA
Found at i:4439788 original size:19 final size:19
Alignment explanation
Indices: 4439747--4439831 Score: 65
Period size: 19 Copynumber: 4.7 Consensus size: 19
4439737 GAAAATGGCT
* ***
4439747 ATCGCAACGCGAAATGGCT
1 ATCGCAATGCGAAATGAAA
4439766 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
4439785 ATCGCAAT--G--A-CAAA
1 ATCGCAATGCGAAATGAAA
4439799 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
4439818 A-CTGCAACGCGAAA
1 ATC-GCAATGCGAAA
4439832 CACAAATCGC
Statistics
Matches: 53, Mismatches: 7, Indels: 12
0.74 0.10 0.17
Matches are distributed among these distances:
14 11 0.21
15 1 0.02
16 1 0.02
17 1 0.02
18 2 0.04
19 37 0.70
ACGTcount: A:0.44, C:0.21, G:0.21, T:0.14
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:4439869 original size:19 final size:19
Alignment explanation
Indices: 4439847--4439959 Score: 74
Period size: 19 Copynumber: 6.1 Consensus size: 19
4439837 ATCGCATTGT
4439847 GATTTTCATTTCGCGTTGC
1 GATTTTCATTTCGCGTTGC
**
4439866 GA-TTT--GGT--CGTTGC
1 GATTTTCATTTCGCGTTGC
*
4439880 GATTTTCATTTCGCATTGC
1 GATTTTCATTTCGCGTTGC
* *
4439899 GATTTTCATTTTGCATTGC
1 GATTTTCATTTCGCGTTGC
***
4439918 GATAGCCATTTCCGCGTTGC
1 GATTTTCATTT-CGCGTTGC
** *
4439938 GATAGTCATTTTCGTGTTGC
1 GATTTTCA-TTTCGCGTTGC
4439958 GA
1 GA
4439960 AAGTAAACTA
Statistics
Matches: 74, Mismatches: 13, Indels: 13
0.74 0.13 0.13
Matches are distributed among these distances:
14 8 0.11
15 3 0.04
16 1 0.01
17 1 0.01
18 3 0.04
19 33 0.45
20 22 0.30
21 3 0.04
ACGTcount: A:0.14, C:0.19, G:0.23, T:0.43
Consensus pattern (19 bp):
GATTTTCATTTCGCGTTGC
Found at i:4439939 original size:20 final size:20
Alignment explanation
Indices: 4439914--4439959 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
4439904 TCATTTTGCA
4439914 TTGCGATAGCCATTTCCGCG
1 TTGCGATAGCCATTTCCGCG
* * *
4439934 TTGCGATAGTCATTTTCGTG
1 TTGCGATAGCCATTTCCGCG
4439954 TTGCGA
1 TTGCGA
4439960 AAGTAAACTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.15, C:0.22, G:0.26, T:0.37
Consensus pattern (20 bp):
TTGCGATAGCCATTTCCGCG
Found at i:4440499 original size:18 final size:18
Alignment explanation
Indices: 4440476--4440523 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
4440466 CGGGTCGATC
4440476 AGGTGATGGCTCTGGGTG
1 AGGTGATGGCTCTGGGTG
*
4440494 AGGTGATAGCTCTGGGTG
1 AGGTGATGGCTCTGGGTG
4440512 AGGTGATGGCTC
1 AGGTGATGGCTC
4440524 CCAAAGTGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.15, C:0.12, G:0.46, T:0.27
Consensus pattern (18 bp):
AGGTGATGGCTCTGGGTG
Found at i:4441891 original size:20 final size:20
Alignment explanation
Indices: 4441843--4441901 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
4441833 AATAGTTTCT
* *
4441843 GAAAATGAAAATCGCAACAC
1 GAAAATGACAATCGCAACGC
4441863 GAAAATGACAATCGCAACGC
1 GAAAATGACAATCGCAACGC
** *
4441883 GAATTTGACTATCGCAACG
1 GAAAATGACAATCGCAACG
4441902 AGAGAATAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.44, C:0.22, G:0.19, T:0.15
Consensus pattern (20 bp):
GAAAATGACAATCGCAACGC
Found at i:4442406 original size:21 final size:20
Alignment explanation
Indices: 4442374--4442529 Score: 104
Period size: 20 Copynumber: 7.7 Consensus size: 20
4442364 CGCTTTGAAA
* * *
4442374 ATCGCATTGCGATTATGTATT
1 ATCGCGTTGCGA-TAAGTAGT
*
4442395 ATCTCGTTGCGA-AAGTCAGT
1 ATCGCGTTGCGATAAGT-AGT
4442415 ATCGCGTTGCGA-AAGTTAGT
1 ATCGCGTTGCGATAAG-TAGT
4442435 ATCGCGTTGCGA-AAGTCAGT
1 ATCGCGTTGCGATAAGT-AGT
** *
4442455 ATCGCGTTGCGATTTTGTATT
1 ATCGCGTTGCGA-TAAGTAGT
** *
4442476 ATCGCGTTGCGATTTTGTATT
1 ATCGCGTTGCGA-TAAGTAGT
**
4442497 ATCAAGTTGCGAT-AGTCAGT
1 ATCGCGTTGCGATAAGT-AGT
*
4442517 ATCGCATTGCGAT
1 ATCGCGTTGCGAT
4442530 TTTCCAAATT
Statistics
Matches: 114, Mismatches: 15, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
19 6 0.05
20 62 0.54
21 44 0.39
22 2 0.02
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (20 bp):
ATCGCGTTGCGATAAGTAGT
Found at i:4442422 original size:20 final size:20
Alignment explanation
Indices: 4442394--4442466 Score: 128
Period size: 20 Copynumber: 3.6 Consensus size: 20
4442384 GATTATGTAT
*
4442394 TATCTCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
4442414 TATCGCGTTGCGAAAGTTAG
1 TATCGCGTTGCGAAAGTCAG
4442434 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
4442454 TATCGCGTTGCGA
1 TATCGCGTTGCGA
4442467 TTTTGTATTA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 50 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTCAG
Found at i:4442604 original size:20 final size:21
Alignment explanation
Indices: 4442518--4442611 Score: 154
Period size: 21 Copynumber: 4.5 Consensus size: 21
4442508 ATAGTCAGTA
4442518 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTCCAAAT
4442539 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTCCAAAT
4442560 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTCCAAAT
* **
4442581 TCGCATTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCAAAT
4442601 TCGCATTGCGA
1 TCGCATTGCGA
4442612 ATTGGGAAAA
Statistics
Matches: 70, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
20 17 0.24
21 53 0.76
ACGTcount: A:0.22, C:0.23, G:0.16, T:0.38
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCAAAT
Found at i:4442626 original size:41 final size:42
Alignment explanation
Indices: 4442518--4442626 Score: 112
Period size: 42 Copynumber: 2.6 Consensus size: 42
4442508 ATAGTCAGTA
* * * *
4442518 TCGCATTGCGATTTTCCAAATTCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGAATTGCCAAAATCGCATTGCGATTTTACAAAT
* * * **
4442560 TCGCATTGCGATTTTCCAAATTCGCATTGCGA-TTTACTTAT
1 TCGCATTGCGAATTGCCAAAATCGCATTGCGATTTTACAAAT
**
4442601 TCGCATTGCGAATTGGGAAAATCGCA
1 TCGCATTGCGAATTGCCAAAATCGCA
4442627 ACGCGAAATT
Statistics
Matches: 59, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
41 27 0.46
42 32 0.54
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (42 bp):
TCGCATTGCGAATTGCCAAAATCGCATTGCGATTTTACAAAT
Found at i:4442653 original size:21 final size:22
Alignment explanation
Indices: 4442601--4442653 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
4442591 ATTTACTTAT
4442601 TCGCATTGCG-AATTGGGAAAA
1 TCGCATTGCGAAATTGGGAAAA
**
4442622 TCGCAACGCGAAATT-GGAAAA
1 TCGCATTGCGAAATTGGGAAAA
4442643 TCGCATTGCGA
1 TCGCATTGCGA
4442654 TAGTCATAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (22 bp):
TCGCATTGCGAAATTGGGAAAA
Found at i:4449631 original size:2 final size:2
Alignment explanation
Indices: 4449624--4449658 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
4449614 GTTACTCAAT
4449624 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4449659 TCTAAGGGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:4451655 original size:13 final size:13
Alignment explanation
Indices: 4451639--4451664 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4451629 ATATTTTTTA
4451639 AATTTAGATCCCT
1 AATTTAGATCCCT
4451652 AATTTAGATCCCT
1 AATTTAGATCCCT
4451665 CTTTATTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (13 bp):
AATTTAGATCCCT
Found at i:4452971 original size:16 final size:16
Alignment explanation
Indices: 4452933--4452971 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
4452923 TCATACCTAG
* *
4452933 CATTTTATTTTGGTTA
1 CATTTTGTTTTAGTTA
*
4452949 CATTTTGTTTTAGTTT
1 CATTTTGTTTTAGTTA
4452965 CATTTTG
1 CATTTTG
4452972 GTGTCCCGCC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.15, C:0.08, G:0.13, T:0.64
Consensus pattern (16 bp):
CATTTTGTTTTAGTTA
Found at i:4453420 original size:21 final size:21
Alignment explanation
Indices: 4453396--4453444 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
4453386 ATTTGGGTAA
*
4453396 CTAAACTATCAATTTTAGTAC
1 CTAAACTATCAATTTTAATAC
* *
4453417 CTAAATTATCAATTTTAATAT
1 CTAAACTATCAATTTTAATAC
4453438 CTAAACT
1 CTAAACT
4453445 TTTAGTTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.41, C:0.16, G:0.02, T:0.41
Consensus pattern (21 bp):
CTAAACTATCAATTTTAATAC
Found at i:4453562 original size:34 final size:34
Alignment explanation
Indices: 4453519--4453583 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
4453509 AAAATTTAAC
4453519 GCGTTTAGTACCTAAACTATCAGTTGTGGTCAAT
1 GCGTTTAGTACCTAAACTATCAGTTGTGGTCAAT
4453553 GCGTTTAGTACCTAAACTATCAGTTGTGGTC
1 GCGTTTAGTACCTAAACTATCAGTTGTGGTC
4453584 GTTTTAGTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (34 bp):
GCGTTTAGTACCTAAACTATCAGTTGTGGTCAAT
Found at i:4453590 original size:30 final size:32
Alignment explanation
Indices: 4453519--4453600 Score: 123
Period size: 34 Copynumber: 2.6 Consensus size: 32
4453509 AAAATTTAAC
4453519 GCGTTTAGTACCTAAACTATCAGTTGTGGTCAA
1 GCGTTTAGTACCTAAACTATCAGTTGTGGTC-A
4453552 TGCGTTTAGTACCTAAACTATCAGTTGTGGTC-
1 -GCGTTTAGTACCTAAACTATCAGTTGTGGTCA
*
4453584 G-TTTTAGTACCTAAACT
1 GCGTTTAGTACCTAAACT
4453601 TTCATTTTTT
Statistics
Matches: 47, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
30 15 0.32
31 1 0.02
34 31 0.66
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.37
Consensus pattern (32 bp):
GCGTTTAGTACCTAAACTATCAGTTGTGGTCA
Found at i:4453762 original size:31 final size:31
Alignment explanation
Indices: 4453724--4453836 Score: 147
Period size: 31 Copynumber: 3.6 Consensus size: 31
4453714 TTTAATTTTT
* *
4453724 TTGAAAGTTTAGGTACTAAAATGGATAAAAA
1 TTGAAAGTTTAGATACTAAAATGGATCAAAA
*
4453755 TTGAAAGTTTA-AGTATTAAAATGGATCAAAA
1 TTGAAAGTTTAGA-TACTAAAATGGATCAAAA
* *
4453786 TTAAAAGTTTAGATACTAAAATTGATCAAAA
1 TTGAAAGTTTAGATACTAAAATGGATCAAAA
* *
4453817 TTGATAGTTTATATACTAAA
1 TTGAAAGTTTAGATACTAAA
4453837 TGTGTAGTTT
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
31 70 0.99
32 1 0.01
ACGTcount: A:0.48, C:0.04, G:0.14, T:0.34
Consensus pattern (31 bp):
TTGAAAGTTTAGATACTAAAATGGATCAAAA
Found at i:4454156 original size:7 final size:7
Alignment explanation
Indices: 4454144--4454173 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
4454134 CTGTCTCTCT
4454144 TCATTGA
1 TCATTGA
4454151 TCATTGA
1 TCATTGA
*
4454158 TCATTGG
1 TCATTGA
4454165 TCATTGA
1 TCATTGA
4454172 TC
1 TC
4454174 GACTCACCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.43
Consensus pattern (7 bp):
TCATTGA
Found at i:4458759 original size:21 final size:20
Alignment explanation
Indices: 4458713--4458762 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
4458703 CTGAAATAAT
**
4458713 AAAAAATATTATTTTTTTCA
1 AAAAAATATTATTTAATTCA
*
4458733 ATAAAAATATTGATTTAATTGA
1 A-AAAAATATT-ATTTAATTCA
4458755 AAAAAATA
1 AAAAAATA
4458763 ATATATAGAG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.64
22 8 0.32
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.40
Consensus pattern (20 bp):
AAAAAATATTATTTAATTCA
Found at i:4458760 original size:22 final size:21
Alignment explanation
Indices: 4458713--4458760 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
4458703 CTGAAATAAT
**
4458713 AAAAAATATTATTTTTTTCAA
1 AAAAAATATTATTTAATTCAA
* *
4458734 TAAAAATATTGATTTAATTGAA
1 AAAAAATATT-ATTTAATTCAA
4458756 AAAAA
1 AAAAA
4458761 TAATATATAG
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.40
Consensus pattern (21 bp):
AAAAAATATTATTTAATTCAA
Found at i:4462765 original size:65 final size:65
Alignment explanation
Indices: 4462653--4463075 Score: 589
Period size: 65 Copynumber: 6.5 Consensus size: 65
4462643 CAAGAGGTAG
* * *
4462653 ATTGAACA-AGTACATATCACTCATATGACTCATATACCTTTGTGGTGCATGTGGTGGAGTGATA
1 ATTGAATACAGTACATATCACTCATATGACTCATGTACCTTTGTGGTGCATGAGGTGGAGTGATA
* * *
4462717 ATTGAATATAGTACATATCACTCATATGACTCATGTACCTCTGTGGTGCATGGGGTGGAGTGATA
1 ATTGAATACAGTACATATCACTCATATGACTCATGTACCTTTGTGGTGCATGAGGTGGAGTGATA
* *
4462782 ATTGAATACAATACATATCACTCATATGACTCATGTACCTTTGTGGTGCATGGGGTGGAGTGATA
1 ATTGAATACAGTACATATCACTCATATGACTCATGTACCTTTGTGGTGCATGAGGTGGAGTGATA
* *
4462847 ATTGAATATAGTACAGATCACTCATATGACTCATGTACCTTTGTGGTGCATGAGGTGGAGTGATA
1 ATTGAATACAGTACATATCACTCATATGACTCATGTACCTTTGTGGTGCATGAGGTGGAGTGATA
* * * *
4462912 ATTGAATACAGTACAAATAACTCATATGACTCATGTACCTTTGTGGTGAATGAGGTGTA-TGGAT
1 ATTGAATACAGTACATATCACTCATATGACTCATGTACCTTTGTGGTGCATGAGGTGGAGT-GAT
4462976 A
65 A
* * * * * *
4462977 ATTAAATACAATACAGATCACTCATATGAATCATGTACATTTGTGGTGCATGAGATGGAGTGATA
1 ATTGAATACAGTACATATCACTCATATGACTCATGTACCTTTGTGGTGCATGAGGTGGAGTGATA
* * * * *
4463042 ATTTAATACTGCAAATATCACTCAATAAGACTCA
1 ATTGAATACAGTACATATCACTC-ATATGACTCA
4463076 AGTATCATGT
Statistics
Matches: 322, Mismatches: 33, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
64 8 0.02
65 305 0.95
66 9 0.03
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (65 bp):
ATTGAATACAGTACATATCACTCATATGACTCATGTACCTTTGTGGTGCATGAGGTGGAGTGATA
Found at i:4465163 original size:22 final size:22
Alignment explanation
Indices: 4465122--4465188 Score: 116
Period size: 22 Copynumber: 3.0 Consensus size: 22
4465112 CTCGTATAAA
4465122 TGCACCGAAGTGCCCCGTAGAAT
1 TGCACCGAAGTG-CCCGTAGAAT
4465145 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
*
4465167 TGCACCGTAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
4465189 GATGTCCATA
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
22 31 0.72
23 12 0.28
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.19
Consensus pattern (22 bp):
TGCACCGAAGTGCCCGTAGAAT
Found at i:4466159 original size:263 final size:263
Alignment explanation
Indices: 4465692--4466218 Score: 1045
Period size: 263 Copynumber: 2.0 Consensus size: 263
4465682 CATATACTTG
4465692 TTTTCACATATATATTTCCTATCAATTCTTATGCCATCACATAATTCCTTTAACATACATAACAT
1 TTTTCACATATATATTTCCTATCAATTCTTATGCCATCACATAATTCCTTTAACATACATAACAT
*
4465757 ATCATGTAACATTATAATAGAAATACTTATAAGTCATATCACTTAAAGCACATATACTTATAGTC
66 ATCATGTAACATTATAATAGAAATAATTATAAGTCATATCACTTAAAGCACATATACTTATAGTC
4465822 ACATTGCTTATATCTTAATCGTATGCCTTCTCTTAAACATATATATTCACATGTTCAGGTAATTC
131 ACATTGCTTATATCTTAATCGTATGCCTTCTCTTAAACATATATATTCACATGTTCAGGTAATTC
4465887 ACCATTTCATCACATAATTGGGTATTCATATAACTCATTTCATTTCATTTCATATCTATCTATAT
196 ACCATTTCATCACATAATTGGGTATTCATATAACTCATTTCATTTCATTTCATATCTATCTATAT
4465952 ATA
261 ATA
4465955 TTTTCACATATATATTTCCTATCAATTCTTATGCCATCACATAATTCCTTTAACATACATAACAT
1 TTTTCACATATATATTTCCTATCAATTCTTATGCCATCACATAATTCCTTTAACATACATAACAT
4466020 ATCATGTAACATTATAATAGAAATAATTATAAGTCATATCACTTAAAGCACATATACTTATAGTC
66 ATCATGTAACATTATAATAGAAATAATTATAAGTCATATCACTTAAAGCACATATACTTATAGTC
4466085 ACATTGCTTATATCTTAATCGTATGCCTTCTCTTAAACATATATATTCACATGTTCAGGTAATTC
131 ACATTGCTTATATCTTAATCGTATGCCTTCTCTTAAACATATATATTCACATGTTCAGGTAATTC
4466150 ACCATTTCATCACATAATTGGGTATTCATATAACTCATTTCATTTCATTTCATATCTATCTATAT
196 ACCATTTCATCACATAATTGGGTATTCATATAACTCATTTCATTTCATTTCATATCTATCTATAT
4466215 ATA
261 ATA
4466218 T
1 T
4466219 ATATATCCTC
Statistics
Matches: 263, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
263 263 1.00
ACGTcount: A:0.35, C:0.19, G:0.06, T:0.40
Consensus pattern (263 bp):
TTTTCACATATATATTTCCTATCAATTCTTATGCCATCACATAATTCCTTTAACATACATAACAT
ATCATGTAACATTATAATAGAAATAATTATAAGTCATATCACTTAAAGCACATATACTTATAGTC
ACATTGCTTATATCTTAATCGTATGCCTTCTCTTAAACATATATATTCACATGTTCAGGTAATTC
ACCATTTCATCACATAATTGGGTATTCATATAACTCATTTCATTTCATTTCATATCTATCTATAT
ATA
Found at i:4467172 original size:21 final size:21
Alignment explanation
Indices: 4467148--4467192 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
4467138 TCTTGTTCGT
* *
4467148 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
4467169 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
4467190 TTG
1 TTG
4467193 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:4470849 original size:15 final size:14
Alignment explanation
Indices: 4470810--4470850 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
4470800 GTTTGATTCG
4470810 GACGAGTTGACTCA
1 GACGAGTTGACTCA
*
4470824 GACGGGTTGACTCA
1 GACGAGTTGACTCA
4470838 GATCGAGTTGACT
1 GA-CGAGTTGACT
4470851 TGGACCGAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 15 0.62
15 9 0.38
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (14 bp):
GACGAGTTGACTCA
Found at i:4477492 original size:21 final size:21
Alignment explanation
Indices: 4477454--4477493 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
4477444 CCCCCTTTGA
**
4477454 AGGGGAACCGATTCCCCCCAC
1 AGGGGAACCGATAACCCCCAC
*
4477475 AGGGGAATCGATAACCCCC
1 AGGGGAACCGATAACCCCC
4477494 CTGGGGTTCT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.38, G:0.25, T:0.10
Consensus pattern (21 bp):
AGGGGAACCGATAACCCCCAC
Found at i:4496053 original size:21 final size:21
Alignment explanation
Indices: 4496028--4496094 Score: 134
Period size: 21 Copynumber: 3.2 Consensus size: 21
4496018 GTATATGATT
4496028 CTTAAGGAATGATATGTGGTC
1 CTTAAGGAATGATATGTGGTC
4496049 CTTAAGGAATGATATGTGGTC
1 CTTAAGGAATGATATGTGGTC
4496070 CTTAAGGAATGATATGTGGTC
1 CTTAAGGAATGATATGTGGTC
4496091 CTTA
1 CTTA
4496095 TGGACATTAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.28, C:0.10, G:0.27, T:0.34
Consensus pattern (21 bp):
CTTAAGGAATGATATGTGGTC
Found at i:4496153 original size:22 final size:22
Alignment explanation
Indices: 4496111--4496153 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
4496101 TTATTATATG
**
4496111 GCACTACGGTGCAATTCTACGT
1 GCACTACGGTGCAATGATACGT
*
4496133 GCACTTCGGTGCAATGATACG
1 GCACTACGGTGCAATGATACG
4496154 AGCTGTGGTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (22 bp):
GCACTACGGTGCAATGATACGT
Found at i:4500342 original size:17 final size:17
Alignment explanation
Indices: 4500322--4500354 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
4500312 ATATTTATTT
4500322 ATAT-AAAATATAGTATA
1 ATATGAAAA-ATAGTATA
4500339 ATATGAAAAATAGTAT
1 ATATGAAAAATAGTAT
4500355 TGTGGTTTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (17 bp):
ATATGAAAAATAGTATA
Found at i:4500543 original size:25 final size:26
Alignment explanation
Indices: 4500515--4500563 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
4500505 TAAATATTAA
4500515 AAATATA-AAATAATTTTAACTAGTG
1 AAATATATAAATAATTTTAACTAGTG
* *
4500540 AAATTTATTAATAATTTTAACTAG
1 AAATATATAAATAATTTTAACTAG
4500564 AGGTATAGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.29
26 15 0.71
ACGTcount: A:0.49, C:0.04, G:0.06, T:0.41
Consensus pattern (26 bp):
AAATATATAAATAATTTTAACTAGTG
Found at i:4500643 original size:18 final size:18
Alignment explanation
Indices: 4500620--4500657 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
4500610 ATACATATGG
4500620 ATAGTGGTCCTTCGGAAC
1 ATAGTGGTCCTTCGGAAC
* *
4500638 ATAGTGGTCTTTCGGGAC
1 ATAGTGGTCCTTCGGAAC
4500656 AT
1 AT
4500658 TTCTACGCGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (18 bp):
ATAGTGGTCCTTCGGAAC
Found at i:4518771 original size:21 final size:21
Alignment explanation
Indices: 4518732--4518773 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
4518722 GGTTATCATG
* **
4518732 AAATCAAGAAACTTTCACCAT
1 AAATCAAGAAAATGGCACCAT
4518753 AAATCAAGAAAATGGCACCAT
1 AAATCAAGAAAATGGCACCAT
4518774 GGCATTAATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.50, C:0.21, G:0.10, T:0.19
Consensus pattern (21 bp):
AAATCAAGAAAATGGCACCAT
Found at i:4519092 original size:14 final size:14
Alignment explanation
Indices: 4519073--4519101 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
4519063 CACACTCCTT
4519073 ATATAGAAAAAACA
1 ATATAGAAAAAACA
4519087 ATATAGAAAAAACA
1 ATATAGAAAAAACA
4519101 A
1 A
4519102 ACAAAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.72, C:0.07, G:0.07, T:0.14
Consensus pattern (14 bp):
ATATAGAAAAAACA
Found at i:4525054 original size:152 final size:153
Alignment explanation
Indices: 4524815--4525123 Score: 611
Period size: 152 Copynumber: 2.0 Consensus size: 153
4524805 TGATTTTTAG
4524815 TTTTAATCGTTTTAGTGAAAATTTTGGATGTTAAAGGGGATTTAATGGATATAAGTTGCATGTGA
1 TTTTAATCGTTTTAGTGAAAATTTTGGATGTTAAAGGGGATTTAATGGATATAAGTTGCATGTGA
4524880 TAAGTGTTAGTAAGTTTAAGGGTTTTATTGGAGTTAAAAGTACGAGATTTAGGTGAAATTTGGTA
66 TAAGTGTTAGTAAGTTTAAGGGTTTTATTGGAGTTAAAAGTACGAGATTTAGGTGAAATTTGGTA
4524945 AAATTTGAAGTGAAATAGATGAA
131 AAATTTGAAGTGAAATAGATGAA
4524968 TTTTAATCGTTTTAGTGAAAATTTTGGATGTTAAAGGGGA-TTAATGGATATAAGTTGCATGTGA
1 TTTTAATCGTTTTAGTGAAAATTTTGGATGTTAAAGGGGATTTAATGGATATAAGTTGCATGTGA
4525032 TAAGTGTTAGTAAGTTTAAGGGTTTTATTGGAGTTAAAAGTACGAGATTTAGGTGAAATTTGGTA
66 TAAGTGTTAGTAAGTTTAAGGGTTTTATTGGAGTTAAAAGTACGAGATTTAGGTGAAATTTGGTA
4525097 AAATTTGAAGTGAAATAGATGAA
131 AAATTTGAAGTGAAATAGATGAA
4525120 TTTT
1 TTTT
4525124 GGGCAAGGGT
Statistics
Matches: 156, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
152 116 0.74
153 40 0.26
ACGTcount: A:0.34, C:0.02, G:0.25, T:0.39
Consensus pattern (153 bp):
TTTTAATCGTTTTAGTGAAAATTTTGGATGTTAAAGGGGATTTAATGGATATAAGTTGCATGTGA
TAAGTGTTAGTAAGTTTAAGGGTTTTATTGGAGTTAAAAGTACGAGATTTAGGTGAAATTTGGTA
AAATTTGAAGTGAAATAGATGAA
Found at i:4525857 original size:23 final size:23
Alignment explanation
Indices: 4525831--4525906 Score: 98
Period size: 23 Copynumber: 3.3 Consensus size: 23
4525821 GAGTCAAGGG
4525831 TTCTATGCGGTCATTCGGGACAA
1 TTCTATGCGGTCATTCGGGACAA
*
4525854 TTCTATGTGGTCATTCGGGACAA
1 TTCTATGCGGTCATTCGGGACAA
** * *
4525877 TTCTACACGGTCTTTCGAGACAA
1 TTCTATGCGGTCATTCGGGACAA
*
4525900 ATCTATG
1 TTCTATG
4525907 TGGCACTTCG
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (23 bp):
TTCTATGCGGTCATTCGGGACAA
Found at i:4525928 original size:24 final size:24
Alignment explanation
Indices: 4525897--4525954 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 24
4525887 TCTTTCGAGA
*
4525897 CAAA-TCTATGTGGCACTTCGGAG
1 CAAATTCTACGTGGCACTTCGGAG
* *
4525920 CATATTCTACGTGGCACTTCGGTG
1 CAAATTCTACGTGGCACTTCGGAG
4525944 CAAATTCTACG
1 CAAATTCTACG
4525955 CAGCAATTTC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
23 3 0.10
24 27 0.90
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.29
Consensus pattern (24 bp):
CAAATTCTACGTGGCACTTCGGAG
Found at i:4529519 original size:32 final size:32
Alignment explanation
Indices: 4529483--4529545 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
4529473 GGTCACTTAT
4529483 GGAACCTATAATTGTTTGGTACATAAAATTAC
1 GGAACCTATAATTGTTTGGTACATAAAATTAC
4529515 GGAACCTATAATTGTTTGGTACATAAAATTA
1 GGAACCTATAATTGTTTGGTACATAAAATTA
4529546 GGGATAGACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (32 bp):
GGAACCTATAATTGTTTGGTACATAAAATTAC
Found at i:4530864 original size:3 final size:3
Alignment explanation
Indices: 4530856--4530904 Score: 73
Period size: 3 Copynumber: 16.0 Consensus size: 3
4530846 TTAATTTGTT
4530856 TTA TTA TTA TTA TTAA TTA TTA TTA TTTA TTA TTA TTA TTA TTA -TA
1 TTA TTA TTA TTA TT-A TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA
4530902 TTA
1 TTA
4530905 ACATATATTT
Statistics
Matches: 43, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.05
3 35 0.81
4 6 0.14
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:4530876 original size:13 final size:12
Alignment explanation
Indices: 4530856--4530904 Score: 73
Period size: 13 Copynumber: 4.0 Consensus size: 12
4530846 TTAATTTGTT
4530856 TTATTATTATTA
1 TTATTATTATTA
4530868 TTAATTATTATTA
1 TT-ATTATTATTA
4530881 TTTATTATTATTA
1 -TTATTATTATTA
4530894 TTATTA-TATTA
1 TTATTATTATTA
4530905 ACATATATTT
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
11 5 0.14
12 8 0.23
13 20 0.57
14 2 0.06
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (12 bp):
TTATTATTATTA
Found at i:4532197 original size:31 final size:31
Alignment explanation
Indices: 4532162--4532272 Score: 177
Period size: 31 Copynumber: 3.6 Consensus size: 31
4532152 CCATAGATTT
* * *
4532162 CGAAGAACCTAGGTAATCAGTCCATATGTCC
1 CGAAGAACATAGGTAAACAATCCATATGTCC
* *
4532193 CGAAGAAAATAGGTAAACAACCCATATGTCC
1 CGAAGAACATAGGTAAACAATCCATATGTCC
4532224 CGAAGAACATAGGTAAACAATCCATATGTCC
1 CGAAGAACATAGGTAAACAATCCATATGTCC
4532255 CGAAGAACATAGGTAAAC
1 CGAAGAACATAGGTAAAC
4532273 CCTCGACCCT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 73 1.00
ACGTcount: A:0.41, C:0.23, G:0.18, T:0.18
Consensus pattern (31 bp):
CGAAGAACATAGGTAAACAATCCATATGTCC
Found at i:4535669 original size:31 final size:31
Alignment explanation
Indices: 4535631--4535753 Score: 194
Period size: 31 Copynumber: 4.0 Consensus size: 31
4535621 CCCAAAGGAC
* *
4535631 CAGTCCATA-GATTCCGAAGAACCTAGGTAAT
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAT
*
4535662 CAGTCCATATGTCCCGAAGAAAATAGGTAAT
1 CAGTCCATATGTCCCGAAGAACATAGGTAAT
*
4535693 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAT
4535724 CAGTCCATATGTCCCGAAGAACATAGGTAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAA
4535754 ACCCTCGACC
Statistics
Matches: 86, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
31 85 0.99
32 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.21
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAT
Found at i:4543599 original size:19 final size:20
Alignment explanation
Indices: 4543575--4543612 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
4543565 CTCTAGTACT
4543575 CACTAAATAAA-ACCCTAAC
1 CACTAAATAAACACCCTAAC
4543594 CACTAAATAAACACCCTAA
1 CACTAAATAAACACCCTAA
4543613 ACGGTCGAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.53, C:0.32, G:0.00, T:0.16
Consensus pattern (20 bp):
CACTAAATAAACACCCTAAC
Found at i:4544735 original size:3 final size:3
Alignment explanation
Indices: 4544712--4544758 Score: 53
Period size: 3 Copynumber: 16.3 Consensus size: 3
4544702 ATAAAACACA
* * *
4544712 AAT AAT ATT AAT ATT ATT AAT AAT AAT AAT -AT AAT AAT AAT -AT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
4544758 A
1 A
4544759 GTTATATCCC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
2 4 0.11
3 34 0.89
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (3 bp):
AAT
Found at i:4544765 original size:11 final size:11
Alignment explanation
Indices: 4544712--4544758 Score: 58
Period size: 11 Copynumber: 4.1 Consensus size: 11
4544702 ATAAAACACA
4544712 AATAATATTAAT
1 AATAATA-TAAT
* *
4544724 ATTATTAATAAT
1 AATAAT-ATAAT
4544736 AATAATATAAT
1 AATAATATAAT
4544747 AATAATATAAT
1 AATAATATAAT
4544758 A
1 A
4544759 GTTATATCCC
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
11 17 0.57
12 12 0.40
13 1 0.03
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
AATAATATAAT
Found at i:4545063 original size:37 final size:37
Alignment explanation
Indices: 4545012--4545625 Score: 511
Period size: 37 Copynumber: 16.2 Consensus size: 37
4545002 AGGCTTACTA
* * *
4545012 ATGGATTTGTTTCACTACTCTTCCGTGAAGGCTTACG
1 ATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTAAG
*
4545049 ATGGATTTGCTTCACTACTCTTCGGTGAAGGATTAAG
1 ATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTAAG
* * *
4545086 ATTGATTTGCTTCACAACTCTTCGGTGAAGGCTGAAG
1 ATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTAAG
** *
4545123 ATTAATTTGCTTCACTACTCTTTGGTGAAGGCTTAAG
1 ATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTAAG
*** **** * * * * *
4545160 ATGG-CCCGGAGGACCTAATCATCATGCTCAAAAGGCTTACTG
1 ATGGATTTGCTTCA-CTACTCTTC--GGT--GAAGGCTTA-AG
*
4545202 ATGGATTTGCTTCACTACTCTTCTGTGAAGGCTTAAG
1 ATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTAAG
*
4545239 ATGGATTTTCTTCACTACTCTTCGGTGAAGGCTTAAG
1 ATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTAAG
* * *
4545276 ATTGATTTGCTTCATTACTCTTCTGTGAAGGCTTAAG
1 ATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTAAG
*** **** * * * *
4545313 ATGG-CCCGAAGGACCTAATCATCATGCTCGGAAGGCTTACTG
1 ATGGATTTGCTTCA-CTACTCTTC--GGT--GAAGGCTTA-AG
* * *
4545355 GTGGATTTGCTTCACTTCTCTTCCGTGAAGGCTTAAG
1 ATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTAAG
* *
4545392 ATGGTTTTGCTTCACTACTCTTCGGTAAAGGCTTAAG
1 ATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTAAG
* ** * *
4545429 ATGGCCCGTAGGACTT-AAT-CATCATGCTC-G-GAAGGCTTACTG
1 ATGG---ATTTG-CTTCACTAC-TC-T--TCGGTGAAGGCTTA-AG
*
4545471 ATGGATTTGCTTTACTACTCTTCGGTGAAGGCTTAAG
1 ATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTAAG
* *
4545508 ATTGATTTGCTTCTCTACTCTTCGGTGAAGGCTTAAG
1 ATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTAAG
* *
4545545 ATTGATTTGCTTCACCACTCTTCGGTGAAGGCTTAAG
1 ATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTAAG
*
4545582 ATTGATTTGCTTCACTACTCTTCGGTGAAGGCTTAAG
1 ATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTAAG
4545619 ATGGATT
1 ATGGATT
4545626 CACTTCTTCA
Statistics
Matches: 453, Mismatches: 97, Indels: 54
0.75 0.16 0.09
Matches are distributed among these distances:
36 6 0.01
37 335 0.74
38 30 0.07
39 10 0.02
40 9 0.02
41 29 0.06
42 28 0.06
43 6 0.01
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.35
Consensus pattern (37 bp):
ATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTAAG
Found at i:4545209 original size:153 final size:153
Alignment explanation
Indices: 4545039--4545430 Score: 617
Period size: 153 Copynumber: 2.6 Consensus size: 153
4545029 CTCTTCCGTG
* * * *
4545039 AAGGCTTAC-GATGGATTTGCTTCACTACTCTTCGGTGAAGGATTAAGATTGATTTGCTTCACAA
1 AAGGCTTACTGATGGATTTGCTTCACTACTCTTCCGTGAAGGCTTAAGATGGATTTGCTTCACTA
*
4545103 CTCTTCGGTGAAGGCTGAAGATTAATTTGCTTCACTACTCTT-TGGTGAAGGCTTAAGATGGCCC
66 CTCTTCGGTGAAGGCTTAAGATTAATTTGCTTCACTACTCTTCT-GTGAAGGCTTAAGATGGCCC
*
4545167 GGAGGACCTAATCATCATGCTCAA
130 GAAGGACCTAATCATCATGCTCAA
* *
4545191 AAGGCTTACTGATGGATTTGCTTCACTACTCTTCTGTGAAGGCTTAAGATGGATTTTCTTCACTA
1 AAGGCTTACTGATGGATTTGCTTCACTACTCTTCCGTGAAGGCTTAAGATGGATTTGCTTCACTA
* *
4545256 CTCTTCGGTGAAGGCTTAAGATTGATTTGCTTCATTACTCTTCTGTGAAGGCTTAAGATGGCCCG
66 CTCTTCGGTGAAGGCTTAAGATTAATTTGCTTCACTACTCTTCTGTGAAGGCTTAAGATGGCCCG
**
4545321 AAGGACCTAATCATCATGCTCGG
131 AAGGACCTAATCATCATGCTCAA
* * *
4545344 AAGGCTTACTGGTGGATTTGCTTCACTTCTCTTCCGTGAAGGCTTAAGATGGTTTTGCTTCACTA
1 AAGGCTTACTGATGGATTTGCTTCACTACTCTTCCGTGAAGGCTTAAGATGGATTTGCTTCACTA
*
4545409 CTCTTCGGTAAAGGCTTAAGAT
66 CTCTTCGGTGAAGGCTTAAGAT
4545431 GGCCCGTAGG
Statistics
Matches: 221, Mismatches: 17, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
152 9 0.04
153 211 0.95
154 1 0.00
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.34
Consensus pattern (153 bp):
AAGGCTTACTGATGGATTTGCTTCACTACTCTTCCGTGAAGGCTTAAGATGGATTTGCTTCACTA
CTCTTCGGTGAAGGCTTAAGATTAATTTGCTTCACTACTCTTCTGTGAAGGCTTAAGATGGCCCG
AAGGACCTAATCATCATGCTCAA
Found at i:4545220 original size:79 final size:78
Alignment explanation
Indices: 4545127--4545395 Score: 289
Period size: 79 Copynumber: 3.5 Consensus size: 78
4545117 CTGAAGATTA
* *
4545127 ATTTGCTTCACTACTCTT-TGGTGAAGGCTTAAGATGGCCCGGAGGACCTAATCATCATGCTCAA
1 ATTTGCTTCACTACTCTTCT-GTGAAGGCTTAAGATGGCCCGAAGGACCTAATCATCATGCTC-G
4545191 AAGGCTTACTGATGG
64 AAGGCTTACTGATGG
******** * * *
4545206 ATTTGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG-ATTTTCTTCACTACTCTTC--GGT-GA
1 ATTTGCTTCACTACTCTTCTGTGAAGGCTTAAGATGGCCCGAAGGAC-CTAATCATCATGCTCGA
* *
4545267 AGGCTTA-AGATTG
65 AGGCTTACTGATGG
*
4545280 ATTTGCTTCATTACTCTTCTGTGAAGGCTTAAGATGGCCCGAAGGACCTAATCATCATGCTCGGA
1 ATTTGCTTCACTACTCTTCTGTGAAGGCTTAAGATGGCCCGAAGGACCTAATCATCATGCTC-GA
*
4545345 AGGCTTACTGGTGG
65 AGGCTTACTGATGG
* *
4545359 ATTTGCTTCACTTCTCTTCCGTGAAGGCTTAAGATGG
1 ATTTGCTTCACTACTCTTCTGTGAAGGCTTAAGATGG
4545396 TTTTGCTTCA
Statistics
Matches: 150, Mismatches: 32, Indels: 16
0.76 0.16 0.08
Matches are distributed among these distances:
74 47 0.31
75 9 0.06
76 2 0.01
77 2 0.01
78 10 0.07
79 79 0.53
80 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.33
Consensus pattern (78 bp):
ATTTGCTTCACTACTCTTCTGTGAAGGCTTAAGATGGCCCGAAGGACCTAATCATCATGCTCGAA
GGCTTACTGATGG
Found at i:4545266 original size:190 final size:190
Alignment explanation
Indices: 4544931--4545314 Score: 597
Period size: 190 Copynumber: 2.0 Consensus size: 190
4544921 ATCAGACTCG
* * *
4544931 AGATTGATTTGTTTCACTACTCTTTGGTGAAGGCTTAAGATGGCCCAGAGGAATTAATCATCATG
1 AGATTAATTTGCTTCACTACTCTTTGGTGAAGGCTTAAGATGGCCCAGAGGAACTAATCATCATG
* *** * *
4544996 TTTGGAAGGCTTACTAATGGATTTGTTTCACTACTCTTCCGTGAAGGCTTACGATGGATTTGCTT
66 CTCAAAAGGCTTACTAATGGATTTGCTTCACTACTCTTCCGTGAAGGCTTAAGATGGATTTGCTT
4545061 CACTACTCTTCGGTGAAGGATTAAGATTGATTTGCTTCACAACTCTTCGGTGAAGGCTGA
131 CACTACTCTTCGGTGAAGGATTAAGATTGATTTGCTTCACAACTCTTCGGTGAAGGCTGA
* *
4545121 AGATTAATTTGCTTCACTACTCTTTGGTGAAGGCTTAAGATGGCCCGGAGGACCTAATCATCATG
1 AGATTAATTTGCTTCACTACTCTTTGGTGAAGGCTTAAGATGGCCCAGAGGAACTAATCATCATG
* * *
4545186 CTCAAAAGGCTTACTGATGGATTTGCTTCACTACTCTTCTGTGAAGGCTTAAGATGGATTTTCTT
66 CTCAAAAGGCTTACTAATGGATTTGCTTCACTACTCTTCCGTGAAGGCTTAAGATGGATTTGCTT
* ** * *
4545251 CACTACTCTTCGGTGAAGGCTTAAGATTGATTTGCTTCATTACTCTTCTGTGAAGGCTTA
131 CACTACTCTTCGGTGAAGGATTAAGATTGATTTGCTTCACAACTCTTCGGTGAAGGCTGA
4545311 AGAT
1 AGAT
4545315 GGCCCGAAGG
Statistics
Matches: 175, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
190 175 1.00
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (190 bp):
AGATTAATTTGCTTCACTACTCTTTGGTGAAGGCTTAAGATGGCCCAGAGGAACTAATCATCATG
CTCAAAAGGCTTACTAATGGATTTGCTTCACTACTCTTCCGTGAAGGCTTAAGATGGATTTGCTT
CACTACTCTTCGGTGAAGGATTAAGATTGATTTGCTTCACAACTCTTCGGTGAAGGCTGA
Found at i:4545360 original size:116 final size:116
Alignment explanation
Indices: 4545228--4545546 Score: 498
Period size: 116 Copynumber: 2.8 Consensus size: 116
4545218 ACTCTTCTGT
* *
4545228 GAAGGCTTA-AGATGGATTTTCTTCACTACTCTTCGGTGAAGGCTTAAGATTGATTTGCTTCATT
1 GAAGGCTTACTGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATTGATTTGCTTCATT
*
4545292 ACTCTTCTGTGAAGGCTTAAGATGGCCCGAAGGACCTAATCATCATGCTCG
66 ACTCTTCGGTGAAGGCTTAAGATGGCCCGAAGGACCTAATCATCATGCTCG
* * * * * *
4545343 GAAGGCTTACTGGTGGATTTGCTTCACTTCTCTTCCGTGAAGGCTTAAGATGGTTTTGCTTCACT
1 GAAGGCTTACTGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATTGATTTGCTTCATT
* * *
4545408 ACTCTTCGGTAAAGGCTTAAGATGGCCCGTAGGACTTAATCATCATGCTCG
66 ACTCTTCGGTGAAGGCTTAAGATGGCCCGAAGGACCTAATCATCATGCTCG
*
4545459 GAAGGCTTACTGATGGATTTGCTTTACTACTCTTCGGTGAAGGCTTAAGATTGATTTGCTTC-TC
1 GAAGGCTTACTGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATTGATTTGCTTCAT-
4545523 TACTCTTCGGTGAAGGCTTAAGAT
65 TACTCTTCGGTGAAGGCTTAAGAT
4545547 TGATTTGCTT
Statistics
Matches: 182, Mismatches: 20, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
115 9 0.05
116 173 0.95
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.34
Consensus pattern (116 bp):
GAAGGCTTACTGATGGATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATTGATTTGCTTCATT
ACTCTTCGGTGAAGGCTTAAGATGGCCCGAAGGACCTAATCATCATGCTCG
Found at i:4560585 original size:23 final size:23
Alignment explanation
Indices: 4560557--4560613 Score: 114
Period size: 23 Copynumber: 2.5 Consensus size: 23
4560547 ATAAATCCAA
4560557 ACAAATTCAAAGTCAATCAATCC
1 ACAAATTCAAAGTCAATCAATCC
4560580 ACAAATTCAAAGTCAATCAATCC
1 ACAAATTCAAAGTCAATCAATCC
4560603 ACAAATTCAAA
1 ACAAATTCAAA
4560614 CATTCCAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.51, C:0.25, G:0.04, T:0.21
Consensus pattern (23 bp):
ACAAATTCAAAGTCAATCAATCC
Found at i:4562422 original size:20 final size:20
Alignment explanation
Indices: 4562385--4562423 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
4562375 AGATTGAGTG
* * *
4562385 GATTTTGATGTTGTTTGCAC
1 GATTTTAATGATGATTGCAC
4562405 GATTTTAATGATGATTGCA
1 GATTTTAATGATGATTGCA
4562424 AGTTTAGGAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46
Consensus pattern (20 bp):
GATTTTAATGATGATTGCAC
Found at i:4562646 original size:20 final size:21
Alignment explanation
Indices: 4562601--4562661 Score: 79
Period size: 20 Copynumber: 2.9 Consensus size: 21
4562591 TCCCCTATGG
*
4562601 GGGGGAATCTGTTCCCCTTCAAA
1 GGGGGAATCGGTT-CCC-TCAAA
4562624 GGGGGAATCGGTTCCCT-AAA
1 GGGGGAATCGGTTCCCTCAAA
*
4562644 GGGGGAATCGATTCCCTC
1 GGGGGAATCGGTTCCCTC
4562662 TGCACCAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 19 0.54
21 1 0.03
22 3 0.09
23 12 0.34
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.23
Consensus pattern (21 bp):
GGGGGAATCGGTTCCCTCAAA
Found at i:4566494 original size:21 final size:21
Alignment explanation
Indices: 4566470--4566522 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
4566460 GAGTTTGTTT
*
4566470 TCATTTTTCA-ATTTTGAAACA
1 TCATTTTTCATATTTT-AAAAA
4566491 TCATTTTT-ATATTTTAAAAA
1 TCATTTTTCATATTTTAAAAA
*
4566511 TAATTTTTCATA
1 TCATTTTTCATA
4566523 ATCCGAAGTC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.36, C:0.09, G:0.02, T:0.53
Consensus pattern (21 bp):
TCATTTTTCATATTTTAAAAA
Found at i:4577153 original size:33 final size:35
Alignment explanation
Indices: 4577116--4577181 Score: 91
Period size: 33 Copynumber: 1.9 Consensus size: 35
4577106 CGAAGTGTTG
*
4577116 TCTCACTAGAGACAATTTT-TCTTAAAA-AAATGT
1 TCTCACTAGAGACAATTTTCTCCTAAAACAAATGT
* *
4577149 TCTCACTCGAGACAGTTTTCTCCTAAAACAAAT
1 TCTCACTAGAGACAATTTTCTCCTAAAACAAAT
4577182 TTTGTCTCAC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 17 0.61
34 7 0.25
35 4 0.14
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.33
Consensus pattern (35 bp):
TCTCACTAGAGACAATTTTCTCCTAAAACAAATGT
Found at i:4577199 original size:37 final size:34
Alignment explanation
Indices: 4577113--4577204 Score: 82
Period size: 33 Copynumber: 2.6 Consensus size: 34
4577103 TGTCGAAGTG
*
4577113 TTGTCTCAC-TAGAGACAATTTT-TCTTAAAAAAAT
1 TTGTCTCACTTA-AGAC-ATTTTCTCCTAAAAAAAT
* **
4577147 GT-TCTCACTCGAGACAGTTTTCTCCTAAAACAAATT
1 TTGTCTCACTTAAGACA-TTTTCTCCTAAAA-AAA-T
4577183 TTGTCTCACTTAAGACATTTTC
1 TTGTCTCACTTAAGACATTTTC
4577205 CCTCAGAACA
Statistics
Matches: 45, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
32 1 0.02
33 14 0.31
34 8 0.18
35 3 0.07
36 7 0.16
37 12 0.27
ACGTcount: A:0.32, C:0.21, G:0.10, T:0.38
Consensus pattern (34 bp):
TTGTCTCACTTAAGACATTTTCTCCTAAAAAAAT
Found at i:4577426 original size:65 final size:63
Alignment explanation
Indices: 4577355--4577611 Score: 271
Period size: 65 Copynumber: 3.9 Consensus size: 63
4577345 AAAAGTGATA
* * *
4577355 ATCTTTGATATTGTTTCTCTTGAAACAAGTGTTGTTTCCCTTGAGACAGTTTCTCTTGAAACATC
1 ATCTTTGAGATCGTTTCCCTTGAAACAA-T-TTGTTTCCCTTGAGACAGTTTCTCTTGAAACATC
* * * * * * * *
4577420 ATCTTTGAGTTTGTTTACTTTGAAACAAAATTTAGTCTCTCTTGAGACAGTTTCTCATGAAACTT
1 ATCTTTGAGATCGTTTCCCTTGAAAC--AATTT-GTTTCCCTTGAGACAGTTTCTCTTGAAACAT
4577485 C
63 C
* * * *
4577486 ATCTTTGAGATCGTTTCCCTTGAAATGAATTTTGTTTCTCTTGAGAAAATTTCTCTTGAAACATC
1 ATCTTTGAGATCGTTTCCCTTGAAA-CAA-TTTGTTTCCCTTGAGACAGTTTCTCTTGAAACATC
** *
4577551 ATCTTTGAGATCGTTTCCCTTGAAATGATTTTTTTCTCTCTTGAGACAGTTTCTCTTGAAA
1 ATCTTTGAGATCGTTTCCCTTGAAACAATTTGTTTC-C-CTTGAGACAGTTTCTCTTGAAA
4577612 TAAATCCCTA
Statistics
Matches: 160, Mismatches: 25, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
63 7 0.04
64 1 0.01
65 97 0.61
66 53 0.33
67 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.14, T:0.44
Consensus pattern (63 bp):
ATCTTTGAGATCGTTTCCCTTGAAACAATTTGTTTCCCTTGAGACAGTTTCTCTTGAAACATC
Found at i:4577488 original size:66 final size:65
Alignment explanation
Indices: 4577394--4577611 Score: 301
Period size: 65 Copynumber: 3.3 Consensus size: 65
4577384 TGTTGTTTCC
* * * * ** *
4577394 CTTGAGACAGTTTCTCTTGAAACATCATCTTTGAGTTTGTTTACTTTGAAACAAAATTTAGTCTC
1 CTTGAGACAGTTTCTCTTGAAACATCATCTTTGAGATCGTTTCCCTTGAAA-TGAATTTTGTCTC
4577459 T
65 T
* * *
4577460 CTTGAGACAGTTTCTCATGAAACTTCATCTTTGAGATCGTTTCCCTTGAAATGAATTTTGTTTCT
1 CTTGAGACAGTTTCTCTTGAAACATCATCTTTGAGATCGTTTCCCTTGAAATGAATTTTGTCTCT
* * * *
4577525 CTTGAGAAAATTTCTCTTGAAACATCATCTTTGAGATCGTTTCCCTTGAAATGATTTTTTTCTCT
1 CTTGAGACAGTTTCTCTTGAAACATCATCTTTGAGATCGTTTCCCTTGAAATGAATTTTGTCTCT
4577590 CTTGAGACAGTTTCTCTTGAAA
1 CTTGAGACAGTTTCTCTTGAAA
4577612 TAAATCCCTA
Statistics
Matches: 133, Mismatches: 19, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
65 88 0.66
66 45 0.34
ACGTcount: A:0.25, C:0.18, G:0.14, T:0.43
Consensus pattern (65 bp):
CTTGAGACAGTTTCTCTTGAAACATCATCTTTGAGATCGTTTCCCTTGAAATGAATTTTGTCTCT
Found at i:4577521 original size:131 final size:130
Alignment explanation
Indices: 4577355--4577611 Score: 327
Period size: 131 Copynumber: 2.0 Consensus size: 130
4577345 AAAAGTGATA
* * * * *
4577355 ATCTTTGATATTGTTTCTCTTGAAACAAGTGTTGTTTCCCTTGAGACAGTTTCTCTTGAAACATC
1 ATCTTTGAGATCGTTTCCCTTGAAACAAGTGTTGTTTCCCTTGAGAAAATTTCTCTTGAAACATC
* * *
4577420 ATCTTTGAGTTTGTTTACTTTGAAACAAAATTTAGTCTCTCTTGAGACAGTTTCTCATGAAACTT
66 ATCTTTGAGATCGTTTACCTTGAAA-AAAATTTAGTCTCTCTTGAGACAGTTTCTCATGAAACTT
4577485 C
130 C
* * *
4577486 ATCTTTGAGATCGTTTCCCTTGAAATGAA-TTTTGTTTCTCTTGAGAAAATTTCTCTTGAAACAT
1 ATCTTTGAGATCGTTTCCCTTGAAA-CAAGTGTTGTTTCCCTTGAGAAAATTTCTCTTGAAACAT
* ** * ** *
4577550 CATCTTTGAGATCGTTTCCCTTGAAATGATTTTTTTCTCTCTTGAGACAGTTTCTCTTGAAA
65 CATCTTTGAGATCGTTTACCTTGAAAAAAATTTAGTCTCTCTTGAGACAGTTTCTCATGAAA
4577612 TAAATCCCTA
Statistics
Matches: 107, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
130 30 0.28
131 75 0.70
132 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.14, T:0.44
Consensus pattern (130 bp):
ATCTTTGAGATCGTTTCCCTTGAAACAAGTGTTGTTTCCCTTGAGAAAATTTCTCTTGAAACATC
ATCTTTGAGATCGTTTACCTTGAAAAAAATTTAGTCTCTCTTGAGACAGTTTCTCATGAAACTTC
Found at i:4577530 original size:36 final size:34
Alignment explanation
Indices: 4577490--4577612 Score: 87
Period size: 36 Copynumber: 3.6 Consensus size: 34
4577480 AACTTCATCT
4577490 TTGAGATCGTTTCCCTTGAAATGAATTTTGTTTCTC
1 TTGAGATCGTTTCCCTTGAAATG-ATTTT-TTTCTC
*** * * **
4577526 TTGAGAAAATTTCTCTTGAAA-CA---TCATCT-
1 TTGAGATCGTTTCCCTTGAAATGATTTTTTTCTC
4577555 TTGAGATCGTTTCCCTTGAAATGATTTTTTTCTCTC
1 TTGAGATCGTTTCCCTTGAAATGA-TTTTTT-TCTC
*
4577591 TTGAGA-CAGTTTCTCTTGAAAT
1 TTGAGATC-GTTTCCCTTGAAAT
4577613 AAATCCCTAA
Statistics
Matches: 64, Mismatches: 15, Indels: 16
0.67 0.16 0.17
Matches are distributed among these distances:
29 17 0.27
30 4 0.06
31 1 0.02
34 2 0.03
35 4 0.06
36 36 0.56
ACGTcount: A:0.24, C:0.17, G:0.15, T:0.45
Consensus pattern (34 bp):
TTGAGATCGTTTCCCTTGAAATGATTTTTTTCTC
Found at i:4577947 original size:134 final size:131
Alignment explanation
Indices: 4577615--4577980 Score: 455
Period size: 131 Copynumber: 2.8 Consensus size: 131
4577605 CTTGAAATAA
4577615 ATCCCTAAAGATGGCCTG-CAGTCCTCATCGCGTAGGAACCGTGTCATCCACCGACCAGACCTCC
1 ATCCCTAAAGATGGCCTGTC-GTCCTCATCGCGTAGGAACCGTGTCATCCACCGACCAGACCTCC
* * * * * *
4577679 TCATCACTTAGGAGTTGTTTCACCCGTAGATAATCAGTCATCCTCATCACGTACGAACCGTTTTA
65 TCATCACGTAGGAGTCGTGTCACCCCTAGATAACCAGTCATCCTCATCACATACGAACCGTTTTA
4577744 TC
130 TC
* ** * * * * * * *
4577746 ATCCCTAAATATGGATTGTCATCCTCATCACATAAGAAACTTGTCATCCACCGACTAGACCTCCT
1 ATCCCTAAAGATGGCCTGTCGTCCTCATCGCGTAGGAACCGTGTCATCCACCGACCAGACCTCCT
* ** * *
4577811 CATCACGTAGGAGCCGTGTCACCCCTAGATAACCAGTTGTCCTCATCACATAGGAACTGTGTTAT
66 CATCACGTAGGAGTCGTGTCACCCCTAGATAACCAGTCATCCTCATCACATACGAACCGT-TT-T
4577876 CATC
129 -ATC
* * *
4577880 ATTCCTAAAGATGGCCAGTCGTCCTCATCGCGTAGGAACCGTGTCATCCACCGACCAGATCTCCT
1 ATCCCTAAAGATGGCCTGTCGTCCTCATCGCGTAGGAACCGTGTCATCCACCGACCAGACCTCCT
* *
4577945 CATCACGTAGGAGTCGTGTCACCCTTAGACAACCAG
66 CATCACGTAGGAGTCGTGTCACCCCTAGATAACCAG
4577981 AACTCTTCAT
Statistics
Matches: 194, Mismatches: 37, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
131 102 0.53
132 3 0.02
133 1 0.01
134 88 0.45
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.25
Consensus pattern (131 bp):
ATCCCTAAAGATGGCCTGTCGTCCTCATCGCGTAGGAACCGTGTCATCCACCGACCAGACCTCCT
CATCACGTAGGAGTCGTGTCACCCCTAGATAACCAGTCATCCTCATCACATACGAACCGTTTTAT
C
Found at i:4578170 original size:3 final size:3
Alignment explanation
Indices: 4578162--4578220 Score: 84
Period size: 3 Copynumber: 19.0 Consensus size: 3
4578152 TTTTAATTTG
4578162 TTA TTA TTA TTA TTA TTA TTAA TTA TTTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TT-A TTA -TTA TTA TTA TTA TTA TTA TTA
4578209 -TA TTA TATA TTA
1 TTA TTA T-TA TTA
4578221 ACATATATTT
Statistics
Matches: 52, Mismatches: 0, Indels: 8
0.87 0.00 0.13
Matches are distributed among these distances:
2 2 0.04
3 41 0.79
4 9 0.17
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:4578191 original size:26 final size:26
Alignment explanation
Indices: 4578154--4578220 Score: 100
Period size: 26 Copynumber: 2.5 Consensus size: 26
4578144 CGGGTCTTTT
4578154 TTAATT-TGTTATTATTATTATTATTA
1 TTAATTAT-TTATTATTATTATTATTA
4578180 TTAATTATTTATTATTATTATTATTA
1 TTAATTATTTATTATTATTATTATTA
*
4578206 TTATATTATATATTA
1 TTA-ATTATTTATTA
4578221 ACATATATTT
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
26 27 0.71
27 11 0.29
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.64
Consensus pattern (26 bp):
TTAATTATTTATTATTATTATTATTA
Found at i:4578195 original size:23 final size:23
Alignment explanation
Indices: 4578163--4578220 Score: 91
Period size: 23 Copynumber: 2.5 Consensus size: 23
4578153 TTTAATTTGT
4578163 TATTATTATTATTATTATTAATTA
1 TATTATTATTATTATTATT-ATTA
4578187 T-TTATTATTATTATTATTATTA
1 TATTATTATTATTATTATTATTA
4578209 TATTATATATTA
1 TATTAT-TATTA
4578221 ACATATATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
22 5 0.16
23 21 0.66
24 6 0.19
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (23 bp):
TATTATTATTATTATTATTATTA
Found at i:4584624 original size:19 final size:21
Alignment explanation
Indices: 4584600--4584651 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
4584590 CGGCCAAGAG
*
4584600 CATGTATCTTCA-TT-AAAAT
1 CATGTATTTTCATTTAAAAAT
4584619 CATGTATTTTCATTTAAAAAT
1 CATGTATTTTCATTTAAAAAT
4584640 CATGTATTTTCA
1 CATGTATTTTCA
4584652 AAGGGGTTTC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 11 0.37
20 2 0.07
21 17 0.57
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.46
Consensus pattern (21 bp):
CATGTATTTTCATTTAAAAAT
Found at i:4587229 original size:23 final size:21
Alignment explanation
Indices: 4587177--4587238 Score: 81
Period size: 23 Copynumber: 2.9 Consensus size: 21
4587167 TTTTGGTGCA
* *
4587177 GAGGGAATCGA-TCCCCCCTT
1 GAGGGAACCGATTCCCCCTTT
4587197 GAGGGAACCGATTCCCCCTTT
1 GAGGGAACCGATTCCCCCTTT
4587218 GAAGGGGAACCGATTCCCCCT
1 G-A-GGGAACCGATTCCCCCT
4587239 ACAGAGGAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
20 10 0.27
21 9 0.24
22 1 0.03
23 17 0.46
ACGTcount: A:0.21, C:0.34, G:0.26, T:0.19
Consensus pattern (21 bp):
GAGGGAACCGATTCCCCCTTT
Found at i:4587252 original size:21 final size:21
Alignment explanation
Indices: 4587200--4587259 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
4587190 CCCCCTTGAG
*
4587200 GGAACCGATTCCCCCTTTGA-AGG
1 GGAACCGATTCCCCC--T-ACAGA
4587223 GGAACCGATTCCCCCTACAGA
1 GGAACCGATTCCCCCTACAGA
* *
4587244 GGAATCGATACCCCCT
1 GGAACCGATTCCCCCT
4587260 GGGGTTCTGG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
20 1 0.03
21 17 0.52
23 15 0.45
ACGTcount: A:0.25, C:0.35, G:0.22, T:0.18
Consensus pattern (21 bp):
GGAACCGATTCCCCCTACAGA
Found at i:4595739 original size:61 final size:61
Alignment explanation
Indices: 4595629--4595760 Score: 165
Period size: 61 Copynumber: 2.2 Consensus size: 61
4595619 CAAGGACACC
* * * * *
4595629 TAGTGCAGATGGTGGACACAACCTTATGTCTCGTATCTGGATCATCACTAGAGTGTAAACT
1 TAGTGCAGGTGGTGGACACAACCTTATGTCTCATATCCGGATCAACACTAGAGCGTAAACT
* * * * * *
4595690 TAGTGTAGGTGGTGGGCACGACCTTATGTGTCATATCCGGGTCAACACTAGAGCGTAAGCT
1 TAGTGCAGGTGGTGGACACAACCTTATGTCTCATATCCGGATCAACACTAGAGCGTAAACT
4595751 TAGTGCAGGT
1 TAGTGCAGGT
4595761 TTAGCACTAT
Statistics
Matches: 59, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
61 59 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (61 bp):
TAGTGCAGGTGGTGGACACAACCTTATGTCTCATATCCGGATCAACACTAGAGCGTAAACT
Found at i:4602482 original size:60 final size:60
Alignment explanation
Indices: 4602366--4602488 Score: 133
Period size: 60 Copynumber: 2.0 Consensus size: 60
4602356 GATGACTTTT
* ** ** ** *
4602366 GGGATGAAATTGGAATATTCAATAGTTTTGGGAGGAATTTATAAAGAGGGTCATAGTTTA
1 GGGATGAAATTAGAATATTCAATAGTTTAAGGACAAATTTATAAAGAAAGTCATAGTATA
*
4602426 GGGATGAAATTAGAATATTCAGA-AGTTTAAGGACAAATTTA-AAATGAAAGTTATAGTATA
1 GGGATGAAATTAGAATATTCA-ATAGTTTAAGGACAAATTTATAAA-GAAAGTCATAGTATA
4602486 GGG
1 GGG
4602489 GCATATGATG
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
59 3 0.06
60 48 0.92
61 1 0.02
ACGTcount: A:0.40, C:0.03, G:0.26, T:0.31
Consensus pattern (60 bp):
GGGATGAAATTAGAATATTCAATAGTTTAAGGACAAATTTATAAAGAAAGTCATAGTATA
Found at i:4605998 original size:15 final size:13
Alignment explanation
Indices: 4605965--4605989 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4605955 TAACTTATGT
4605965 TTTATGAATGTTA
1 TTTATGAATGTTA
4605978 TTTATGAATGTT
1 TTTATGAATGTT
4605990 TTATTTATGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.16, T:0.56
Consensus pattern (13 bp):
TTTATGAATGTTA
Found at i:4609082 original size:90 final size:89
Alignment explanation
Indices: 4608925--4609099 Score: 298
Period size: 90 Copynumber: 2.0 Consensus size: 89
4608915 TAATCCCGGA
*
4608925 TATTTAATTCCAATTAATTAAACTATATTTAATTAATTTGAAATAATAAAATCCCTAATATGATT
1 TATTAAATTCCAATTAATTAAACTATATTTAATTAATTTGAAATAATAAAATCCCTAATATGATT
*
4608990 AGGGTAACTTGGATATAAAAGGAT
66 AGGGTAACTCGGATATAAAAGGAT
*
4609014 TATTAAATTCCAATTAATTAAA-TATAGATTTAATTAATTTGAAATAATAAAATCCCTAATGTGA
1 TATTAAATTCCAATTAATTAAACTAT--ATTTAATTAATTTGAAATAATAAAATCCCTAATATGA
4609078 TTAGGGTAACTCGGATATAAAA
64 TTAGGGTAACTCGGATATAAAA
4609100 AGATGTGTTA
Statistics
Matches: 81, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
88 3 0.04
89 21 0.26
90 57 0.70
ACGTcount: A:0.45, C:0.08, G:0.10, T:0.37
Consensus pattern (89 bp):
TATTAAATTCCAATTAATTAAACTATATTTAATTAATTTGAAATAATAAAATCCCTAATATGATT
AGGGTAACTCGGATATAAAAGGAT
Found at i:4610693 original size:7 final size:7
Alignment explanation
Indices: 4610681--4610737 Score: 96
Period size: 7 Copynumber: 7.9 Consensus size: 7
4610671 TATATTGAAA
4610681 AGATTTG
1 AGATTTG
4610688 AGATTTG
1 AGATTTG
4610695 AGATTTG
1 AGATTTG
4610702 AGATTTG
1 AGATTTG
4610709 AGATTTG
1 AGATTTG
4610716 AGATTTG
1 AGATTTG
4610723 AAGATTTG
1 -AGATTTG
4610731 AAGATTT
1 -AGATTT
4610738 ATTTGAATAA
Statistics
Matches: 49, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
7 35 0.71
8 14 0.29
ACGTcount: A:0.32, C:0.00, G:0.26, T:0.42
Consensus pattern (7 bp):
AGATTTG
Found at i:4611530 original size:20 final size:19
Alignment explanation
Indices: 4611466--4611535 Score: 72
Period size: 20 Copynumber: 3.6 Consensus size: 19
4611456 TCAGTTGAGT
4611466 GGTATCGATACTGAAGAGTGTA
1 GGTATCGATACT-AAGAG-G-A
*
4611488 -GTATCGATACCAAGAGG-
1 GGTATCGATACTAAGAGGA
*
4611505 GGTATCGATACTATGAGGAA
1 GGTATCGATACTAAGAGG-A
4611525 GGTATCGATAC
1 GGTATCGATAC
4611536 CATTGATAAC
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
18 15 0.36
19 1 0.02
20 16 0.38
21 10 0.24
ACGTcount: A:0.33, C:0.13, G:0.30, T:0.24
Consensus pattern (19 bp):
GGTATCGATACTAAGAGGA
Found at i:4612056 original size:54 final size:54
Alignment explanation
Indices: 4611893--4612772 Score: 1069
Period size: 54 Copynumber: 16.2 Consensus size: 54
4611883 TTATGCACCT
* * *
4611893 ATATGTTGATGAATAACCGTTTCGGCACTAAGTGTACAATTCACAGAATTCATC
1 ATATGTTGATGAATAATCGTTTCGACACTAAGTGTGCAATTCACAGAATTCATC
* * * *
4611947 ATATGTTAATGAATAATCGTTTC-TCACTAAGTGTGCAACTT-GCATAATTCATC
1 ATATGTTGATGAATAATCGTTTCGACACTAAGTGTGCAA-TTCACAGAATTCATC
* * ** * *
4612000 ATATGTTGATGAATAATCATTTTGACTTTAAGTGTGCAACTCACGGAATTCATC
1 ATATGTTGATGAATAATCGTTTCGACACTAAGTGTGCAATTCACAGAATTCATC
* * *
4612054 ATATGTTGATGAATAACCGTTT-TAGCACTAAGTGTGCAACTCA-AGGAATTCATC
1 ATATGTTGATGAATAATCGTTTCGA-CACTAAGTGTGCAATTCACA-GAATTCATC
* * *
4612108 ATATGTTGATGAATAA-CAATTTC-AGCAGTAAGTGTGCAACTCACAGAATTCATC
1 ATATGTTGATGAATAATC-GTTTCGA-CACTAAGTGTGCAATTCACAGAATTCATC
* * *
4612162 ACATGTTGATGAATAATCGTTTTGACACTAAGTATGCAATTCACAGAATTCATC
1 ATATGTTGATGAATAATCGTTTCGACACTAAGTGTGCAATTCACAGAATTCATC
* * * *
4612216 ATATGTTGATGAGTAACCGTTTCGGCACTAAGTGTGCAATTCACAAAATTCATC
1 ATATGTTGATGAATAATCGTTTCGACACTAAGTGTGCAATTCACAGAATTCATC
* *
4612270 ATATGTTGATGAATAATCGTTTC-AGCACTAAGTGTGCAATTCACGGAATTTATC
1 ATATGTTGATGAATAATCGTTTCGA-CACTAAGTGTGCAATTCACAGAATTCATC
* * *
4612324 ATATGTTGATGAATAATCGTTTCGGCACTAAGTGTGTAATTCACGGAATTCATC
1 ATATGTTGATGAATAATCGTTTCGACACTAAGTGTGCAATTCACAGAATTCATC
* * *
4612378 ATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACGGAATTCATC
1 ATATGTTGATGAATAATCGTTTCGACACTAAGTGTGCAATTCACAGAATTCATC
* * * *
4612432 ATATGTTGATGAATAACCGTTTTGGCACTAAGTGTGCAATTAAC-GAAATTCATC
1 ATATGTTGATGAATAATCGTTTCGACACTAAGTGTGCAATTCACAG-AATTCATC
* * * *
4612486 ATATGTTGATGAATAACCGTTTCAACACTAAGTGTGCAATTCACAAAATTTATC
1 ATATGTTGATGAATAATCGTTTCGACACTAAGTGTGCAATTCACAGAATTCATC
* * * *
4612540 ATATGTTGATGAATAACCTTTTCGGCATTAACTAAGTGTGCAATTCACGGAATTCATC
1 ATATGTTGATGAATAATCGTTTC-G-A--CACTAAGTGTGCAATTCACAGAATTCATC
* * * *
4612598 ATATGTTGATAAATAATCATTTC-AGCACTAAGTGTGCAATTCACAAAATTTATC
1 ATATGTTGATGAATAATCGTTTCGA-CACTAAGTGTGCAATTCACAGAATTCATC
* *
4612652 ATATGTTGATGAATAA-CTATTTCGACACTAAGTGTGCAATTCACAAAATTCATC
1 ATATGTTGATGAATAATC-GTTTCGACACTAAGTGTGCAATTCACAGAATTCATC
* * * *
4612706 ATATATTGATGGATAATCGTTTCGACACTAAGTGTGTAATTCACGGAATTCATC
1 ATATGTTGATGAATAATCGTTTCGACACTAAGTGTGCAATTCACAGAATTCATC
4612760 ATATGTTGATGAA
1 ATATGTTGATGAA
4612773 CAGCCGTACA
Statistics
Matches: 725, Mismatches: 80, Indels: 42
0.86 0.09 0.05
Matches are distributed among these distances:
53 48 0.07
54 625 0.86
55 6 0.01
56 1 0.00
58 45 0.06
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (54 bp):
ATATGTTGATGAATAATCGTTTCGACACTAAGTGTGCAATTCACAGAATTCATC
Found at i:4613088 original size:81 final size:81
Alignment explanation
Indices: 4612990--4613158 Score: 259
Period size: 81 Copynumber: 2.1 Consensus size: 81
4612980 TGTTTTACTA
* * *
4612990 TAAAAGATTAATGGCCTAGCTGTGCATTTGACATAAAGGTGTCAATTATGCCAGTTAGAAT-AAA
1 TAAAAGATTAATGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAG-ATGAAA
**
4613054 GGTTAAATATGTTTGAG
65 GGTTAAATACCTTTGAG
*
4613071 TAAAAGATTAATGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAT
1 TAAAAGATTAATGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
*
4613136 GTTAAATGCCTTTGAG
66 GTTAAATACCTTTGAG
4613152 TAAAAGA
1 TAAAAGA
4613159 CTAGATGTAT
Statistics
Matches: 80, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
80 2 0.03
81 78 0.98
ACGTcount: A:0.37, C:0.11, G:0.22, T:0.30
Consensus pattern (81 bp):
TAAAAGATTAATGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAG
GTTAAATACCTTTGAG
Found at i:4613178 original size:81 final size:81
Alignment explanation
Indices: 4613012--4613178 Score: 203
Period size: 81 Copynumber: 2.1 Consensus size: 81
4613002 GGCCTAGCTG
* * **
4613012 TGCATTTGACATAAAGGTGTCAATTATGCCAGTTAGAATAAAGGTTAAATATGTTTGAGTAAAAG
1 TGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGAATAAAGGTTAAATACCTTTGAGTAAAAG
* * **
4613077 ATTAATGGCCTAACTG
66 ACTAATGGCATAACAA
* *
4613093 TGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAG-ATGAAATGTTAAATGCCTTTGAGTAAAA
1 TGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGAAT-AAAGGTTAAATACCTTTGAGTAAAA
*
4613157 GACTAGAT-GTATAACAA
65 GACTA-ATGGCATAACAA
4613174 TGCAT
1 TGCAT
4613179 AACGGTATAT
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
80 2 0.03
81 69 0.95
82 2 0.03
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.31
Consensus pattern (81 bp):
TGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGAATAAAGGTTAAATACCTTTGAGTAAAAG
ACTAATGGCATAACAA
Found at i:4613253 original size:45 final size:45
Alignment explanation
Indices: 4613183--4613352 Score: 216
Period size: 45 Copynumber: 3.8 Consensus size: 45
4613173 ATGCATAACG
* *
4613183 GTATATGAAAGGCATTAAAGGATGCCATAAATGAAACGTGTAATA
1 GTATATAAAAGGCATGAAAGGATGCCATAAATGAAACGTGTAATA
* *
4613228 GTATATAAAAGGCATAAAAGAATGCCATAAATGAAACGTGTAATA
1 GTATATAAAAGGCATGAAAGGATGCCATAAATGAAACGTGTAATA
* * * * *
4613273 GTGTATAAAAGGCATGAAAGGATGCTATAAATGAAATGTATAATG
1 GTATATAAAAGGCATGAAAGGATGCCATAAATGAAACGTGTAATA
** * *
4613318 GGGTATAAAAGACATGAAAGGATG-TATAAATGAAA
1 GTATATAAAAGGCATGAAAGGATGCCATAAATGAAA
4613353 TTAATAAATA
Statistics
Matches: 113, Mismatches: 12, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
44 11 0.10
45 102 0.90
ACGTcount: A:0.48, C:0.06, G:0.22, T:0.24
Consensus pattern (45 bp):
GTATATAAAAGGCATGAAAGGATGCCATAAATGAAACGTGTAATA
Found at i:4613346 original size:21 final size:21
Alignment explanation
Indices: 4613274--4613347 Score: 69
Period size: 23 Copynumber: 3.4 Consensus size: 21
4613264 CGTGTAATAG
*
4613274 TGTATAAAAGGCATGAAAGGA
1 TGTATAAAAGACATGAAAGGA
* *
4613295 TGCTATAAATGAAATGTATAATGG-
1 TG-TATAAAAGACATG-A-AA-GGA
*
4613319 GGTATAAAAGACATGAAAGGA
1 TGTATAAAAGACATGAAAGGA
4613340 TGTATAAA
1 TGTATAAA
4613348 TGAAATTAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
20 2 0.05
21 11 0.27
22 11 0.27
23 12 0.29
24 3 0.07
25 2 0.05
ACGTcount: A:0.47, C:0.04, G:0.24, T:0.24
Consensus pattern (21 bp):
TGTATAAAAGACATGAAAGGA
Found at i:4615238 original size:2 final size:2
Alignment explanation
Indices: 4615231--4615255 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
4615221 TGTCAGAAAG
4615231 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
4615256 ATAGCTATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4617486 original size:22 final size:22
Alignment explanation
Indices: 4617458--4617519 Score: 99
Period size: 22 Copynumber: 2.8 Consensus size: 22
4617448 ACCGTAATAG
*
4617458 AGTATCGATACCATAGTGTA-GT
1 AGTATCGATACCATAGT-AAGGT
4617480 AGTATCGATACCATAGTAAGGT
1 AGTATCGATACCATAGTAAGGT
4617502 AGTATCGATACCATAGTA
1 AGTATCGATACCATAGTA
4617520 GGGGTATCGT
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
21 1 0.03
22 37 0.97
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (22 bp):
AGTATCGATACCATAGTAAGGT
Found at i:4618589 original size:54 final size:54
Alignment explanation
Indices: 4617795--4618570 Score: 1192
Period size: 54 Copynumber: 14.4 Consensus size: 54
4617785 TTATGTACCT
*
4617795 ATATGTTGATGAATAACCGTTTCGACACTAAGTGTGCAATTCACGGAATTCATC
1 ATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACGGAATTCATC
* * *
4617849 ATATGTTGATGAATAATCGTTTCAGCACTAAGTGTGCAATTCACAGAATTCATC
1 ATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACGGAATTCATC
* * *
4617903 ATATGTTGATGAATAATCGTTTCGCCACTAAGTGTGCAATTCATGGAATTCATC
1 ATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACGGAATTCATC
* ** * *
4617957 ATATGTAGATGAATAATTGTTTCGCCACTAAGTGTGCAATTCACAGAATTCATC
1 ATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACGGAATTCATC
* * * * * * *
4618011 ACATGTTGATTAATAACTGTTTCGACACTAAGTGTGCAATTTATGGAATTTATC
1 ATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACGGAATTCATC
* *
4618065 ATATGTTGATGAATAACCGTTTCGGGACTAAGTGTGCAATTCATGGAATTCATC
1 ATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACGGAATTCATC
4618119 ATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACGGAATTCATC
1 ATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACGGAATTCATC
* * *
4618173 ATATGTTAATGAATAACCGTTTCAGCACTAAGTGTGCAATTCACGAAATTCATC
1 ATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACGGAATTCATC
* * *
4618227 ATATGTTGATGAATAACCATTTCGGCACTAAGTGTGCAATTCATGAAATTCATC
1 ATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACGGAATTCATC
*
4618281 ATATGTTGATGAATAACCGTTTCAGCACTAAGTGTGCAATTCACGGAATTCATC
1 ATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACGGAATTCATC
* *
4618335 ATATGTTGATGAATAACCGTTTCGACACTAAGTGTGCAATTCACAGAATTCATC
1 ATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACGGAATTCATC
*
4618389 ATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACGAAATTCATC
1 ATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACGGAATTCATC
* * * *
4618443 ATATGTTGATGAATAACTGTTTTGGCACTAAGTGTGCAATTTACAGAATTCATC
1 ATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACGGAATTCATC
**
4618497 ATATGTTGATGAATAACTATTTCGGCACTAAGTGTGCAATTCACGGAATTCATC
1 ATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACGGAATTCATC
* * *
4618551 ATATATTAATGAACAACCGT
1 ATATGTTGATGAATAACCGT
4618571 ACATACACTA
Statistics
Matches: 661, Mismatches: 61, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 661 1.00
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (54 bp):
ATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACGGAATTCATC
Found at i:4618923 original size:81 final size:82
Alignment explanation
Indices: 4618782--4618933 Score: 236
Period size: 81 Copynumber: 1.9 Consensus size: 82
4618772 GTTCTAATAT
* * * *
4618782 AAAGGATTAATGGCCTAGCTGTGAATTTAACAGAAATGTGTCAATTATGCCAGTTAGATGAAAGG
1 AAAGGATTAATGGCCTAGCTGTGAATTTAACAGAAAGGTGTCAATCATGCCAATAAGATGAAAGG
4618847 TTAAATATTTTTCAGTA
66 TTAAATATTTTTCAGTA
*
4618864 AAAGG-TTAATGGCCTAGCTGT-ACATTTGACAGAAAGGTGTCAATCATGCCAATAAGATGAAAG
1 AAAGGATTAATGGCCTAGCTGTGA-ATTTAACAGAAAGGTGTCAATCATGCCAATAAGATGAAAG
4618927 GTTAAAT
65 GTTAAAT
4618934 GCGTTTGAGT
Statistics
Matches: 64, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
80 1 0.02
81 58 0.91
82 5 0.08
ACGTcount: A:0.38, C:0.11, G:0.22, T:0.30
Consensus pattern (82 bp):
AAAGGATTAATGGCCTAGCTGTGAATTTAACAGAAAGGTGTCAATCATGCCAATAAGATGAAAGG
TTAAATATTTTTCAGTA
Found at i:4619044 original size:45 final size:45
Alignment explanation
Indices: 4618963--4619144 Score: 249
Period size: 45 Copynumber: 4.1 Consensus size: 45
4618953 GATGTATAAC
* * *
4618963 AATGTATAATGGTGTATAAAAGGCATTAAAGGATGCCATAAATGA
1 AATGTGTAATAGTGTATAAAAGGCATGAAAGGATGCCATAAATGA
* *
4619008 AACGTGTAATAGTGTATAAAAGGCATGAAAGAATGCCATAAATGA
1 AATGTGTAATAGTGTATAAAAGGCATGAAAGGATGCCATAAATGA
*
4619053 AATGTGTAATAGTGTATAAAAGGCATGAAAGGATACCATAAATGA
1 AATGTGTAATAGTGTATAAAAGGCATGAAAGGATGCCATAAATGA
* * * * * *
4619098 AATGTATAATGGGGTATAAAAGACATGAAATGATG-TATAAATGA
1 AATGTGTAATAGTGTATAAAAGGCATGAAAGGATGCCATAAATGA
4619142 AAT
1 AAT
4619145 TAATAAATAA
Statistics
Matches: 122, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
44 11 0.09
45 111 0.91
ACGTcount: A:0.47, C:0.06, G:0.22, T:0.25
Consensus pattern (45 bp):
AATGTGTAATAGTGTATAAAAGGCATGAAAGGATGCCATAAATGA
Found at i:4619837 original size:15 final size:15
Alignment explanation
Indices: 4619797--4619842 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
4619787 TTGGATAATG
* *
4619797 CTACGTGAAATTTATT
1 CTACGTGAAA-ATATC
*
4619813 CTAAGTGAAAATATC
1 CTACGTGAAAATATC
4619828 CTACGTGAAAATATC
1 CTACGTGAAAATATC
4619843 ATATGTGAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
15 17 0.65
16 9 0.35
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (15 bp):
CTACGTGAAAATATC
Found at i:4619850 original size:15 final size:15
Alignment explanation
Indices: 4619817--4619851 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
4619807 TTTATTCTAA
*
4619817 GTGAAAATATCCTAC
1 GTGAAAATATCATAC
*
4619832 GTGAAAATATCATAT
1 GTGAAAATATCATAC
4619847 GTGAA
1 GTGAA
4619852 TAAGACACAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.43, C:0.11, G:0.17, T:0.29
Consensus pattern (15 bp):
GTGAAAATATCATAC
Found at i:4620063 original size:24 final size:24
Alignment explanation
Indices: 4620031--4620095 Score: 130
Period size: 24 Copynumber: 2.7 Consensus size: 24
4620021 ACAAATCTAC
4620031 GTGGTACTTCGGTGCAAATTCTTT
1 GTGGTACTTCGGTGCAAATTCTTT
4620055 GTGGTACTTCGGTGCAAATTCTTT
1 GTGGTACTTCGGTGCAAATTCTTT
4620079 GTGGTACTTCGGTGCAA
1 GTGGTACTTCGGTGCAA
4620096 TTTATATGAG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.17, C:0.17, G:0.28, T:0.38
Consensus pattern (24 bp):
GTGGTACTTCGGTGCAAATTCTTT
Found at i:4622003 original size:30 final size:32
Alignment explanation
Indices: 4621969--4622038 Score: 76
Period size: 30 Copynumber: 2.3 Consensus size: 32
4621959 TTAAAAATAC
*
4621969 ATATATATT-ATTCTTA-TCTAAACTTTT-AAA
1 ATATATATTCATTATTATTCTAAA-TTTTCAAA
*
4621999 ATATAT-TTCATTATTATTTTAAATTTTCAAA
1 ATATATATTCATTATTATTCTAAATTTTCAAA
*
4622030 GTATATATT
1 ATATATATT
4622039 TTATCTTAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
29 2 0.06
30 16 0.48
31 13 0.39
32 2 0.06
ACGTcount: A:0.39, C:0.07, G:0.01, T:0.53
Consensus pattern (32 bp):
ATATATATTCATTATTATTCTAAATTTTCAAA
Found at i:4622187 original size:25 final size:27
Alignment explanation
Indices: 4622141--4622245 Score: 80
Period size: 27 Copynumber: 4.0 Consensus size: 27
4622131 TTTAAATTGA
4622141 AATAAAATATTTTTAAATTAAGTTAAT
1 AATAAAATATTTTTAAATTAAGTTAAT
4622168 AATAAAAT-TTATTT-AA-TAAGTTAAT
1 AATAAAATATT-TTTAAATTAAGTTAAT
*
4622193 -GTAAAAATATTTTTTAAAGTTAA--T-AT
1 AAT-AAAATA-TTTTTAAA-TTAAGTTAAT
* * *
4622219 ATATAAAATATTATGAATTTAAGTTAA
1 A-ATAAAATATTTTTAAATTAAGTTAA
4622246 GTATTTATAC
Statistics
Matches: 61, Mismatches: 5, Indels: 23
0.69 0.06 0.26
Matches are distributed among these distances:
24 1 0.02
25 18 0.30
26 14 0.23
27 23 0.38
28 2 0.03
29 3 0.05
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (27 bp):
AATAAAATATTTTTAAATTAAGTTAAT
Found at i:4623436 original size:365 final size:362
Alignment explanation
Indices: 4622766--4623441 Score: 905
Period size: 365 Copynumber: 1.9 Consensus size: 362
4622756 GTAGTTAACC
* * * * **
4622766 AAATTTTGTAATACATAAAACTATTGATAAATTTATTTTTTAATAGTACTATTTTGTCGAGCCGG
1 AAATTTTCTAATACATAAAACTACTGATAAATTTATTTTCTAATAGTACTATTTTCTCGAGCCAC
* *
4622831 ATTCTTGTGCCTAGATGTAAACTACATTATCCGATCTTTTCTATTTTTGACTTGTTTTAAAATTC
66 ATTCTAGTGCCTAGACGTAAACTACATTATCCGATCTTTTCTATTTTTGACTTGTTTTAAAATTC
* * * *
4622896 TCTCATATCCTATTTCTGAAGCATCTGTTTCAATTGTCTTTGGACCTGTAGCATCTGCTAAATGT
131 TCTCATATCCTATTTCTGAAGCATCTATTTCAACTGTCTTTAGACCTGTAGCATCTGCTAAATGC
* * * * **
4622961 AAGCAAGGTAGTCTTGTGATTTAATTTTTCTAATTTGGGATATAATATTAGTATGAATATTTGTC
196 AAGCAAGATAGCCATGTGATTT-ATTTTTCTAATTTGAGATATAATATTAGTATGAATATTCATC
* * * *
4623026 TAATGTTGTCGATTCGTTTTTAGCCTATTATATAAGGATTTACATAATTTATTGACTTACAATCA
260 CAATGTTATCGATTCGTTTTTAGCCTATCATATAAGGACTTACATAATTTATTGACTTACAATCA
4623091 ATTCGTAAAAGAAATTTTTAAATTAATAAATCACTTTA
325 ATTCGTAAAAGAAATTTTTAAATTAATAAATCACTTTA
*
4623129 AAATTTTCTAATACATAAAACTACTGATAAATTTCTTTTCTAATAGTACTATAATTTACT-GAGC
1 AAATTTTCTAATACATAAAACTACTGATAAATTTATTTTCTAATAGTACTAT--TTT-CTCGAGC
* ** * *
4623193 CACATTCTAGTGTCTAGACGTAAACTGTATTATCCG-TGCTTTTTTGTTTTTGACTTGTTTTAAA
63 CACATTCTAGTGCCTAGACGTAAACTACATTATCCGAT-CTTTTCTATTTTTGACTTGTTTTAAA
* * **
4623257 ATT-TCTCCATATCCTATATTTTTGAAGCATCTATTTCAACTGTCTTTA-AGCTTGTAGGGTCTG
127 ATTCTCT-CATATCC--TATTTCTGAAGCATCTATTTCAACTGTCTTTAGA-CCTGTAGCATCTG
*
4623320 CTAAATGCAAGCAAGATAGCCATGTGATTT-TTTTTTTAATTTGAGATATAATATTAGTATGAAT
188 CTAAATGCAAGCAAGATAGCCATGTGATTTATTTTTCTAATTTGAGATATAATATTAGTATGAAT
* *
4623384 ATTCATCCAATGTTATGGATTC-TTTTTGAGCCTATCATATAAGGGCTTACATAATTTA
253 ATTCATCCAATGTTATCGATTCGTTTTT-AGCCTATCATATAAGGACTTACATAATTTA
4623442 CTAAGTCATG
Statistics
Matches: 269, Mismatches: 35, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
363 48 0.18
364 9 0.03
365 146 0.54
366 2 0.01
367 64 0.24
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.43
Consensus pattern (362 bp):
AAATTTTCTAATACATAAAACTACTGATAAATTTATTTTCTAATAGTACTATTTTCTCGAGCCAC
ATTCTAGTGCCTAGACGTAAACTACATTATCCGATCTTTTCTATTTTTGACTTGTTTTAAAATTC
TCTCATATCCTATTTCTGAAGCATCTATTTCAACTGTCTTTAGACCTGTAGCATCTGCTAAATGC
AAGCAAGATAGCCATGTGATTTATTTTTCTAATTTGAGATATAATATTAGTATGAATATTCATCC
AATGTTATCGATTCGTTTTTAGCCTATCATATAAGGACTTACATAATTTATTGACTTACAATCAA
TTCGTAAAAGAAATTTTTAAATTAATAAATCACTTTA
Found at i:4624636 original size:13 final size:14
Alignment explanation
Indices: 4624618--4624652 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
4624608 CCTAATAAAG
4624618 TATTATTTGATT-A
1 TATTATTTGATTAA
*
4624631 TATTATTTGTTTAA
1 TATTATTTGATTAA
4624645 TATTATTT
1 TATTATTT
4624653 CTAAAACAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 11 0.55
14 9 0.45
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.66
Consensus pattern (14 bp):
TATTATTTGATTAA
Found at i:4626208 original size:3 final size:3
Alignment explanation
Indices: 4626202--4626247 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
4626192 TTACATTTGG
4626202 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
4626248 AATAAATAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:4628504 original size:17 final size:18
Alignment explanation
Indices: 4628469--4628506 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
4628459 TCCTTTCAAA
*
4628469 ATTTTTATATATACTTATT
1 ATTTTCATATATAC-TATT
4628488 ATTTTCATATATA-TATT
1 ATTTTCATATATACTATT
4628505 AT
1 AT
4628507 CTATTAATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
19 12 0.67
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (18 bp):
ATTTTCATATATACTATT
Found at i:4629158 original size:12 final size:12
Alignment explanation
Indices: 4629141--4629173 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
4629131 AACTAATTCA
4629141 TTTCTTTTTATT
1 TTTCTTTTTATT
4629153 TTTC-TTTTATT
1 TTTCTTTTTATT
4629164 TTTACTTTTT
1 TTT-CTTTTT
4629174 GTATAGCATC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 10 0.53
12 5 0.26
13 4 0.21
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.82
Consensus pattern (12 bp):
TTTCTTTTTATT
Found at i:4639544 original size:18 final size:18
Alignment explanation
Indices: 4639518--4639555 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
4639508 CAAGATTATC
*
4639518 TTTTTGAAATTCAATTTA
1 TTTTCGAAATTCAATTTA
4639536 TTTTCGAAATTCAATTTA
1 TTTTCGAAATTCAATTTA
4639554 TT
1 TT
4639556 CTTTCACATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.08, G:0.05, T:0.55
Consensus pattern (18 bp):
TTTTCGAAATTCAATTTA
Found at i:4642062 original size:112 final size:116
Alignment explanation
Indices: 4641882--4642194 Score: 377
Period size: 124 Copynumber: 2.7 Consensus size: 116
4641872 CAACATTTCC
* *
4641882 AGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATT
1 AGAAGAGTTCATAATGAGAAGAACTCATCTGAAG-AGGAAGAAGAAGTTCATAATGAGAAGAACT
* * *
4641947 TGTTCAACCTTTGGCTCGAAT-TCATC-A-CTTGAT-GCAT-CAATTTCTCCAA
65 TGTTCAACCTTTGGCTCGACTCT-ATCGAGATAGATAGCATACAATTT-TCCAA
* *
4641996 AGAA-AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAAAAGAAGTTCATAATGAGAAGAACTT
1 AGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTT
* * *
4642060 GTTCAACCTTTTGCTCGACTCTATCGTAGAAGGAGATAGATCAGCATACACTTTTCCAG
66 GTTCAACCTTTGGCTCGACTCTATC-------GAGATAGAT-AGCATACAATTTTCCAA
*
4642119 AGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAGCTT
1 AGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTT
*
4642184 TTTCAACCTTT
66 GTTCAACCTTT
4642195 TGCATGAGTC
Statistics
Matches: 171, Mismatches: 14, Indels: 18
0.84 0.07 0.09
Matches are distributed among these distances:
112 49 0.29
113 29 0.17
114 4 0.02
120 1 0.01
121 4 0.02
123 12 0.07
124 72 0.42
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.26
Consensus pattern (116 bp):
AGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTT
GTTCAACCTTTGGCTCGACTCTATCGAGATAGATAGCATACAATTTTCCAA
Found at i:4642220 original size:124 final size:124
Alignment explanation
Indices: 4641986--4642263 Score: 397
Period size: 124 Copynumber: 2.2 Consensus size: 124
4641976 TGATGCATCA
*
4641986 ATTTCTCCAAAGAA-AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAAAAGAAGTTCATAATG
1 ATTT-TCC-AAGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAAAAGAAGTTCATAATG
**
4642050 AGAAGAACTTGTTCAACCTTTTGCTCGACTCTATCGTAGAAGGAGATAGATCAGCAT--AC
64 AGAAGAACTTGTTCAACCTTTTGCTCGACTCTATCACAGAAGGAGATAGATCAGCATCAAC
*
4642109 ACTTTTCCAGAGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATG
1 A-TTTTCCA-AGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAAAAGAAGTTCATAATG
* * *
4642174 AGAAGAGCTTTTTCAACCTTTTGCAT-GAGTCTATCACAGAAGGAGATAGATCAGCATCAAC
64 AGAAGAACTTGTTCAACCTTTTGC-TCGACTCTATCACAGAAGGAGATAGATCAGCATCAAC
*
4642235 ATTTT-C-AGAAGTGTTCATAATGAGAAGAA
1 ATTTTCCAAGAAGAGTTCATAATGAGAAGAA
4642264 GTTCATAATG
Statistics
Matches: 141, Mismatches: 8, Indels: 13
0.87 0.05 0.08
Matches are distributed among these distances:
122 23 0.16
123 8 0.06
124 102 0.72
125 5 0.04
126 3 0.02
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.26
Consensus pattern (124 bp):
ATTTTCCAAGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAAAAGAAGTTCATAATGAG
AAGAACTTGTTCAACCTTTTGCTCGACTCTATCACAGAAGGAGATAGATCAGCATCAAC
Found at i:4642269 original size:17 final size:17
Alignment explanation
Indices: 4642247--4642280 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
4642237 TTTCAGAAGT
4642247 GTTCATAATGAGAAGAA
1 GTTCATAATGAGAAGAA
4642264 GTTCATAATGAGAAGAA
1 GTTCATAATGAGAAGAA
4642281 CTTGTTCAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.06, G:0.24, T:0.24
Consensus pattern (17 bp):
GTTCATAATGAGAAGAA
Found at i:4642288 original size:20 final size:18
Alignment explanation
Indices: 4642241--4642280 Score: 64
Period size: 17 Copynumber: 2.2 Consensus size: 18
4642231 CAACATTTTC
4642241 AGAAGTGTTCATAATGAGA
1 AGAA-TGTTCATAATGAGA
4642260 AGAA-GTTCATAATGAGA
1 AGAATGTTCATAATGAGA
4642277 AGAA
1 AGAA
4642281 CTTGTTCAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 17 0.81
19 4 0.19
ACGTcount: A:0.47, C:0.05, G:0.25, T:0.23
Consensus pattern (18 bp):
AGAATGTTCATAATGAGA
Found at i:4642631 original size:3 final size:3
Alignment explanation
Indices: 4642625--4642694 Score: 86
Period size: 3 Copynumber: 23.3 Consensus size: 3
4642615 TTCCATTTGG
* * * * *
4642625 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATG ATT ATG ATG ATG ATG
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
4642673 ATG ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT A
4642695 AATAAAAAAA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (3 bp):
ATT
Found at i:4644137 original size:28 final size:25
Alignment explanation
Indices: 4644095--4644159 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 25
4644085 CTCTAATTAT
4644095 TATTTTATATAAATATATATATATATATA
1 TATTTT-T-TAAATA-ATA-ATATATATA
* *
4644124 TATTTGTTTAAATAATAATATTTATT
1 TATTT-TTTAAATAATAATATATATA
4644150 TATTTTTTAA
1 TATTTTTTAA
4644160 TATTAAAGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
25 5 0.15
26 12 0.36
27 3 0.09
28 6 0.18
29 6 0.18
30 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (25 bp):
TATTTTTTAAATAATAATATATATA
Found at i:4644390 original size:142 final size:147
Alignment explanation
Indices: 4644139--4644412 Score: 391
Period size: 142 Copynumber: 1.9 Consensus size: 147
4644129 GTTTAAATAA
**
4644139 TAATATTTATTTATTTTTTAATATTAAAGAAATGGGTTGTCTTAAAGCACCTAGAAGTCATTTTC
1 TAATATTTATTTATTTTTTAATATTAAAGAAATGGACTGTCTTAAAGCACCTAGAAGTCATTTTC
* * * * *
4644204 TGATATTTTTAAATAAATAAATATCATATTCTTATAAATTATATATAT-TA-ATTTTAAT-TATT
66 TGATATCTCTAAATAAATAAATATCATATTCTTAAAAATAATATATATATATATATTAATATATT
4644266 TTTATAGAAATTTTTAT
131 TTTATAGAAATTTTTAT
* *
4644283 TAATATTTATTTA-TTTTTAATATT-AAGAAATTGACTGTCTTAAAGCACCTAGAAGTCTTTTTC
1 TAATATTTATTTATTTTTTAATATTAAAGAAATGGACTGTCTTAAAGCACCTAGAAGTCATTTTC
*
4644346 TGATATCTCTAATTAAATAAATATC-TCATT-TATAAAAATAATATATATATATATATTAATATA
66 TGATATCTCTAAATAAATAAATATCAT-ATTCT-TAAAAATAATATATATATATATATTAATATA
4644409 TTTT
129 TTTT
4644413 CTTAAAATTA
Statistics
Matches: 115, Mismatches: 10, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
141 2 0.02
142 74 0.64
143 13 0.11
144 20 0.17
145 6 0.05
ACGTcount: A:0.39, C:0.07, G:0.06, T:0.48
Consensus pattern (147 bp):
TAATATTTATTTATTTTTTAATATTAAAGAAATGGACTGTCTTAAAGCACCTAGAAGTCATTTTC
TGATATCTCTAAATAAATAAATATCATATTCTTAAAAATAATATATATATATATATTAATATATT
TTTATAGAAATTTTTAT
Done.