Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000872.1 Hibiscus syriacus cultivar Beakdansim tig00001686_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84192

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3791--3826
2
18.0
2
100
0
72
50
0
0
50
1.00
10663--10691
2
14.5
2
100
0
58
51
0
0
48
1.00
19324--19363
11
3.4
13
77
22
52
22
0
0
77
0.77
19332--19369
19
2.0
19
89
0
58
26
0
0
73
0.83
20307--20332
7
3.7
7
100
0
52
46
0
0
53
1.00
24187--24252
21
3.2
21
71
4
71
15
18
28
37
1.91
24191--24268
41
1.9
41
89
0
120
21
20
25
32
1.98
24288--24355
22
3.2
22
71
12
79
17
19
25
38
1.93
24309--24378
19
3.5
19
66
11
59
20
18
20
41
1.91
24288--24386
41
2.4
41
96
0
180
21
19
21
38
1.94
24929--24958
6
5.0
6
100
0
60
16
0
50
33
1.46
25042--25107
19
3.3
19
72
12
69
40
21
19
18
1.91
25057--25128
22
3.4
22
73
11
87
37
25
19
18
1.94
25035--25128
41
2.3
41
98
0
179
39
23
18
19
1.92
27219--27303
27
3.5
24
78
18
79
36
15
18
29
1.92
27219--27303
22
3.5
22
78
18
75
36
15
18
29
1.92
32317--32344
2
14.0
2
100
0
56
50
0
0
50
1.00
33870--33902
11
2.8
12
86
4
50
48
0
0
51
1.00
35585--35609
2
12.5
2
100
0
50
48
0
0
52
1.00
36121--36156
18
2.0
18
88
0
54
33
11
19
36
1.87
38702--38838
60
2.3
60
82
5
161
38
6
21
32
1.80
52745--52780
18
2.0
18
100
0
72
11
16
16
55
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52834--52892
31
1.9
31
92
0
100
40
6
10
42
1.65
52907--53205
54
5.5
55
80
8
351
54
8
0
36
1.31
53019--53104
32
2.7
33
92
5
149
55
5
0
38
1.24
52907--53579
134
5.0
130
80
13
631
53
10
0
35
1.37
53027--53095
14
4.6
15
76
18
72
57
5
0
36
1.22
53105--53394
32
10.5
31
65
29
151
53
10
0
35
1.35
53139--53187
22
2.2
22
85
3
62
55
12
0
32
1.37
53051--53479
188
2.3
188
94
0
743
53
11
0
35
1.39
53222--53555
54
6.1
54
80
10
378
52
11
0
35
1.41
52907--53555
220
2.9
221
83
8
706
53
10
0
35
1.37
53325--53367
22
2.0
22
100
0
86
51
13
0
34
1.42
53327--53375
22
2.2
22
88
3
71
57
12
0
30
1.36
53347--53555
32
7.4
32
68
26
132
52
12
0
34
1.43
53381--53455
22
3.2
23
75
17
82
54
17
0
28
1.43
53491--53590
22
4.4
22
67
7
74
51
10
0
39
1.36
53535--53682
15
9.5
15
82
10
181
51
2
0
45
1.15
56234--57218
105
9.4
105
96
0
1790
23
17
24
33
1.96
71829--71873
22
2.0
22
100
0
90
68
8
13
8
1.38
75145--75281
39
3.5
39
83
2
168
24
23
31
21
1.98

Tables:   1

The End!