genome.fa.s8720.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008720.1 Hibiscus syriacus cultivar Beakdansim tig00111775_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  154275

Tables:   1   

This is table  1  of  1  ( 105 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1558--1606	20	2.5	20	83	6	55	30	26	10	32	1.89
4359--4410	24	2.1	25	82	3	61	50	3	0	46	1.20
5814--5848	14	2.6	13	86	4	52	48	0	8	42	1.33
10446--10540	32	3.0	32	80	6	102	37	15	18	27	1.92
11246--11311	19	3.6	18	76	8	60	34	13	3	48	1.58
19789--19820	16	1.9	17	93	6	57	25	25	6	43	1.77
21614--21651	6	6.3	6	93	0	58	21	15	47	15	1.82
24539--24576	19	2.0	19	85	10	51	44	10	10	34	1.73
26419--26449	11	2.8	11	100	0	62	0	19	64	16	1.29
27416--27460	21	2.1	22	83	4	56	28	4	2	64	1.25
34097--34164	14	4.8	14	85	8	84	79	5	11	2	1.02
34117--34164	16	3.1	15	81	6	60	81	6	8	4	0.98
34770--34824	22	2.5	22	100	0	110	36	27	12	23	1.91
35606--35726	36	3.3	36	77	4	136	28	16	14	40	1.88
35743--35812	36	1.9	36	88	0	104	22	21	15	40	1.91
36136--36346	106	2.0	106	85	1	289	36	23	18	21	1.95
36396--36826	106	4.0	106	85	2	574	35	23	17	23	1.96
36109--36586	264	1.8	264	92	0	803	33	24	19	21	1.97
41187--41306	10	10.4	10	67	25	51	9	11	25	54	1.66
41172--41299	14	10.3	14	73	24	126	9	12	25	53	1.68
41173--41306	24	5.6	24	96	0	241	9	11	24	53	1.67
42398--42448	16	3.2	16	85	0	75	9	9	21	58	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42394--42444	26	2.0	26	84	7	68	11	9	17	60	1.57
43557--43612	25	2.2	26	81	12	64	19	23	1	55	1.53
44314--44458	64	2.2	65	86	3	204	28	21	19	30	1.97
49884--49930	23	2.0	23	87	0	67	23	27	21	27	1.99
51234--51279	24	1.9	24	95	0	83	43	10	13	32	1.78
54364--54397	2	18.0	2	88	11	54	47	0	0	52	1.00
62226--62277	20	2.6	19	87	6	68	32	15	30	21	1.94
62302--62343	19	2.2	19	91	0	66	33	16	19	30	1.94
62756--63547	46	16.8	45	82	8	619	41	12	22	23	1.88
62901--63361	20	20.4	20	66	21	157	41	13	22	22	1.89
63039--63361	158	2.0	158	92	0	529	41	13	22	22	1.89
63131--63269	66	2.1	66	91	0	224	40	14	23	21	1.90
62993--63408	204	2.0	205	90	2	658	41	13	22	22	1.89
63219--63535	26	13.6	24	64	23	126	41	12	23	22	1.88
63085--63315	112	2.1	112	90	3	367	41	13	22	22	1.88
62947--63450	250	2.0	251	91	0	821	41	13	22	22	1.89
63197--63547	185	1.9	184	87	2	517	41	12	23	22	1.88
63197--63547	139	2.5	138	87	2	490	41	12	23	22	1.88
68449--68517	23	3.0	23	84	0	84	30	26	21	21	1.99
68535--68748	103	2.1	103	96	0	392	36	24	12	26	1.91
69501--69538	20	1.9	20	88	0	58	10	31	34	23	1.89
70472--71257	6	127.3	6	93	4	752	51	10	15	21	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71249--71308	22	2.7	22	81	0	66	46	1	21	30	1.61
73849--73878	13	2.2	13	94	5	51	76	0	16	6	0.99
81379--81418	19	2.0	20	95	4	73	17	27	30	25	1.97
81380--81420	9	4.3	9	84	9	55	14	31	29	24	1.95
81416--81476	17	3.3	17	77	20	68	18	45	22	13	1.83
81417--81483	22	3.0	22	91	4	98	17	44	23	13	1.85
88674--88723	9	5.3	9	79	9	55	16	30	28	26	1.96
88669--88723	19	2.9	19	81	7	67	16	29	25	29	1.97
88656--88710	10	5.5	10	77	18	53	16	23	27	32	1.96
88719--88779	17	3.3	17	86	13	77	18	45	22	13	1.83
88720--88786	22	3.0	22	91	4	98	17	44	23	13	1.85
88769--88799	7	4.4	7	100	0	62	16	29	29	25	1.96
92171--92216	17	2.6	18	82	6	58	43	10	15	30	1.81
94992--95108	47	2.6	44	85	9	164	39	8	19	32	1.82
104295--104608	168	1.9	169	87	0	468	25	19	32	23	1.97
105385--105699	169	1.9	169	83	5	413	22	31	18	27	1.97
110566--110620	11	4.7	11	80	12	65	30	21	21	25	1.98
110566--110620	23	2.3	24	87	9	78	30	21	21	25	1.98
112674--112725	7	7.4	7	73	0	50	19	0	28	51	1.47
112674--112725	21	2.5	21	100	0	104	19	0	28	51	1.47
112713--112789	28	2.8	27	76	5	82	25	1	28	44	1.62
112707--112811	35	3.0	37	76	9	103	27	0	27	43	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112764--112853	42	2.1	42	85	4	119	26	0	30	43	1.55
112772--112832	14	4.4	14	74	12	54	27	0	31	40	1.57
117715--117763	25	1.9	26	91	4	82	71	6	10	12	1.30
118839--118865	9	3.0	9	100	0	54	0	11	0	88	0.50
121438--121519	40	2.1	40	90	2	130	29	6	45	19	1.74
127996--128036	20	2.0	21	95	4	75	24	19	21	34	1.97
128772--129140	20	18.5	20	85	4	458	34	26	18	20	1.96
129814--129860	24	2.0	24	87	8	69	25	14	21	38	1.92
130035--130059	12	2.1	12	100	0	50	72	0	28	0	0.86
132362--132687	19	18.4	19	80	15	405	47	17	20	14	1.83
132362--132687	33	9.2	34	82	13	321	47	17	20	14	1.83
132390--132709	161	2.0	157	93	3	543	46	16	21	15	1.83
132390--132709	52	6.0	52	92	4	541	46	16	21	15	1.83
132716--132817	19	5.6	19	85	12	151	14	23	17	44	1.86
132923--132959	14	2.6	14	91	0	65	45	21	0	32	1.52
132940--133010	37	1.9	37	97	0	133	52	16	1	29	1.53
132940--133019	37	2.2	37	90	0	124	53	17	1	27	1.51
134819--134953	19	7.6	19	76	16	137	45	24	19	10	1.81
134875--134931	14	3.7	14	77	20	60	45	24	21	8	1.80
134856--134948	33	2.8	33	98	0	177	47	22	20	9	1.79
134819--134953	52	2.5	54	75	18	131	45	24	19	10	1.81
134949--135077	19	7.3	19	75	17	125	8	17	28	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134949--135040	33	2.8	33	93	3	150	7	18	28	45	1.76
135121--135499	92	4.1	93	98	1	735	46	18	12	22	1.83
135121--135499	185	2.0	185	98	1	733	46	18	12	22	1.83
137201--137286	14	5.7	14	72	20	68	41	23	25	9	1.84
137193--137303	33	3.5	33	85	9	176	45	20	24	9	1.82
137244--137308	19	3.7	19	74	19	77	44	21	23	10	1.83
137320--137374	14	3.6	14	73	21	56	9	27	23	40	1.85
137495--137565	33	2.2	33	92	0	115	47	18	22	11	1.80
137747--137801	22	2.5	22	81	0	74	20	16	40	23	1.91
137946--138139	20	9.6	20	82	5	221	19	19	25	35	1.95
137946--138139	60	3.2	60	83	0	253	19	19	25	35	1.95
138132--138208	21	3.7	20	70	13	57	27	16	23	32	1.96
138194--138245	20	2.6	20	96	0	95	21	13	26	38	1.90
145709--146151	217	2.0	218	90	8	711	41	14	11	32	1.82
146697--146755	17	3.5	17	95	2	102	33	45	5	15	1.68
146697--146763	33	2.0	34	88	2	100	35	44	4	14	1.66
153139--153251	59	1.9	59	85	3	156	30	26	17	24	1.97

Tables:   1

The End!