Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008723.1 Hibiscus syriacus cultivar Beakdansim tig00111781_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55934
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:914 original size:20 final size:20
Alignment explanation
Indices: 862--914 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
852 TTATTATATA
* *
862 TTTTGTTTATTTCTATTTGT
1 TTTTGTTTATTTTTATTAGT
* *
882 TTTTATCCT-TTTTTATTAGT
1 TTTTGT-TTATTTTTATTAGT
902 TTTTGTTTATTTT
1 TTTTGTTTATTTT
915 ATTTTTATTT
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
19 1 0.04
20 23 0.92
21 1 0.04
ACGTcount: A:0.11, C:0.06, G:0.08, T:0.75
Consensus pattern (20 bp):
TTTTGTTTATTTTTATTAGT
Found at i:925 original size:20 final size:20
Alignment explanation
Indices: 788--925 Score: 52
Period size: 22 Copynumber: 6.7 Consensus size: 20
778 ATTATTTGTA
* *
788 TTATTTTTAATTTGTTCATT
1 TTATTTTTATTTTGTTTATT
* *
808 TTATTTTT-TCTTATTCCTAATAT
1 TTATTTTTATTTTGTT--T-AT-T
**
831 TT-TTTTTATTTTGTCTATACG
1 TTATTTTTATTTTGT-T-TATT
*
852 TTATTATATATTTTGTTTATT
1 TTATT-TTTATTTTGTTTATT
**
873 TCTATTTGTT-TTTATCCTT-TT
1 T-TATTT-TTATTT-TGTTTATT
**
894 TTATTAGT-TTTTGTTTATT
1 TTATTTTTATTTTGTTTATT
913 TTATTTTTATTTT
1 TTATTTTTATTTT
926 ATATCTTATT
Statistics
Matches: 84, Mismatches: 21, Indels: 26
0.64 0.16 0.20
Matches are distributed among these distances:
18 3 0.04
19 16 0.19
20 16 0.19
21 12 0.14
22 19 0.23
23 17 0.20
24 1 0.01
ACGTcount: A:0.17, C:0.07, G:0.05, T:0.71
Consensus pattern (20 bp):
TTATTTTTATTTTGTTTATT
Found at i:945 original size:40 final size:38
Alignment explanation
Indices: 852--956 Score: 108
Period size: 40 Copynumber: 2.7 Consensus size: 38
842 TGTCTATACG
852 TTATTATATA-TTTTGTTTATTTCTATTTGTTTTTATCC
1 TTATTATATATTTTTGTTTATTT-TATTTGTTTTTATCC
* * *
890 TT-TTTTATTAGTTTTTGTTTATTTTATTTTTATTTTATATC
1 TTATTATA-TA-TTTTTGTTTATTTTATTTGT-TTTTAT-CC
931 TTATTATATATTTTT-TTTATGTTTAT
1 TTATTATATATTTTTGTTTAT-TTTAT
957 GTATATATAT
Statistics
Matches: 56, Mismatches: 4, Indels: 12
0.78 0.06 0.17
Matches are distributed among these distances:
37 4 0.07
38 4 0.07
39 11 0.20
40 28 0.50
41 5 0.09
42 4 0.07
ACGTcount: A:0.19, C:0.04, G:0.05, T:0.72
Consensus pattern (38 bp):
TTATTATATATTTTTGTTTATTTTATTTGTTTTTATCC
Found at i:948 original size:23 final size:23
Alignment explanation
Indices: 907--964 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 23
897 TTAGTTTTTG
*
907 TTTATTTTAT-TTTTATTTTATA
1 TTTATTATATATTTTATTTTATA
*
929 TCTTATTATATATTTT-TTTTATG
1 T-TTATTATATATTTTATTTTATA
952 TTTATGTATATAT
1 TTTAT-TATATAT
965 ATACACATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
22 5 0.16
23 22 0.71
24 4 0.13
ACGTcount: A:0.24, C:0.02, G:0.03, T:0.71
Consensus pattern (23 bp):
TTTATTATATATTTTATTTTATA
Found at i:1255 original size:30 final size:27
Alignment explanation
Indices: 1221--1285 Score: 69
Period size: 30 Copynumber: 2.3 Consensus size: 27
1211 ATTTCTTTAC
1221 TATTTTTTTTCCTTATC-TTATTTGTTTGTT
1 TATTTTTTTT-CTTATCTTTA-TT-TTT-TT
*
1251 TATTTATTTTTCTTCTCTTTATTTTTTT
1 TATTT-TTTTTCTTATCTTTATTTTTTT
1279 TATTTTT
1 TATTTTT
1286 ATCTTCGATT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
27 2 0.06
28 7 0.22
29 3 0.09
30 12 0.38
31 8 0.25
ACGTcount: A:0.11, C:0.09, G:0.03, T:0.77
Consensus pattern (27 bp):
TATTTTTTTTCTTATCTTTATTTTTTT
Found at i:1340 original size:42 final size:43
Alignment explanation
Indices: 1268--1362 Score: 108
Period size: 42 Copynumber: 2.3 Consensus size: 43
1258 TTTTCTTCTC
*
1268 TTTATTT-TTT-TTATTTTTATCTTCGATTTATTTGC-TCATA
1 TTTATTTATTTATTATCTTTATCTTCGATTTATTTGCTTCATA
* * *
1308 TTTATTTATTTATTATCTTTATCTT-TATTTTATTTTCTTTATA
1 TTTATTTATTTATTATCTTTATCTTCGA-TTTATTTGCTTCATA
*
1351 TTTTTTTATTTA
1 TTTATTTATTTA
1363 CCTTTTAACT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
40 7 0.15
41 4 0.09
42 20 0.43
43 15 0.33
ACGTcount: A:0.19, C:0.07, G:0.02, T:0.72
Consensus pattern (43 bp):
TTTATTTATTTATTATCTTTATCTTCGATTTATTTGCTTCATA
Found at i:1341 original size:20 final size:20
Alignment explanation
Indices: 1310--1360 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
1300 TGCTCATATT
1310 TATTTA-TTTATTATCTTTA
1 TATTTATTTTATTATCTTTA
* *
1329 TCTTTATTTTATTTTCTTTA
1 TATTTATTTTATTATCTTTA
1349 TATTT-TTTTATT
1 TATTTATTTTATT
1361 TACCTTTTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 12 0.43
20 16 0.57
ACGTcount: A:0.20, C:0.06, G:0.00, T:0.75
Consensus pattern (20 bp):
TATTTATTTTATTATCTTTA
Found at i:1367 original size:20 final size:20
Alignment explanation
Indices: 1310--1367 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
1300 TGCTCATATT
*
1310 TATTTATTTA-TTATCTTTA
1 TATTTTTTTATTTATCTTTA
*
1329 TCTTTATTTTATTT-TCTTTA
1 TATTT-TTTTATTTATCTTTA
*
1349 TATTTTTTTATTTACCTTT
1 TATTTTTTTATTTATCTTT
1368 TAACTTTACT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
19 12 0.38
20 18 0.56
21 2 0.06
ACGTcount: A:0.19, C:0.09, G:0.00, T:0.72
Consensus pattern (20 bp):
TATTTTTTTATTTATCTTTA
Found at i:2217 original size:25 final size:26
Alignment explanation
Indices: 2175--2233 Score: 102
Period size: 25 Copynumber: 2.3 Consensus size: 26
2165 ATTAAAGATT
2175 TTGAGTTCTTGAATGAAATCTTGGAA
1 TTGAGTTCTTGAATGAAATCTTGGAA
2201 TTGAGTTC-TGAATGAAATCTTGGAA
1 TTGAGTTCTTGAATGAAATCTTGGAA
*
2226 TAGAGTTC
1 TTGAGTTC
2234 ATAATTAGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 24 0.75
26 8 0.25
ACGTcount: A:0.31, C:0.08, G:0.24, T:0.37
Consensus pattern (26 bp):
TTGAGTTCTTGAATGAAATCTTGGAA
Found at i:2647 original size:58 final size:58
Alignment explanation
Indices: 2580--2695 Score: 205
Period size: 58 Copynumber: 2.0 Consensus size: 58
2570 GGTACTGATA
*
2580 CCCTAGGGGAGGTATCGATACCCCCTAAAGGAAAAGTTGAAGATTGATTCAGTAAATT
1 CCCTAGGGGAGGTATCGATAACCCCTAAAGGAAAAGTTGAAGATTGATTCAGTAAATT
* *
2638 CCCTAGGGGAGGTATCGATAACCCCTAAAGGAAAAGTTGAAGATTGGTTCATTAAATT
1 CCCTAGGGGAGGTATCGATAACCCCTAAAGGAAAAGTTGAAGATTGATTCAGTAAATT
2696 AGTTTAAGTT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.25
Consensus pattern (58 bp):
CCCTAGGGGAGGTATCGATAACCCCTAAAGGAAAAGTTGAAGATTGATTCAGTAAATT
Found at i:4009 original size:20 final size:21
Alignment explanation
Indices: 3984--4025 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
3974 ATGAAAGTTA
*
3984 CTGTAGC-AGGGTATCGGTAC
1 CTGTAGCAAGGGTATCGATAC
4004 CTGTAGCAAGGGTATCGATAC
1 CTGTAGCAAGGGTATCGATAC
4025 C
1 C
4026 CCTGAAGCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (21 bp):
CTGTAGCAAGGGTATCGATAC
Found at i:4034 original size:23 final size:21
Alignment explanation
Indices: 3991--4035 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
3981 TTACTGTAGC
* *
3991 AGGGTATCGGTACCTGTAGCA
1 AGGGTATCGATACCTGAAGCA
4012 AGGGTATCGATACCCCTGAAGCA
1 AGGGTATCGATA--CCTGAAGCA
4035 A
1 A
4036 TCTGAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 11 0.55
23 9 0.45
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
AGGGTATCGATACCTGAAGCA
Found at i:7756 original size:2 final size:2
Alignment explanation
Indices: 7749--7778 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7739 ATTTACATCC
7749 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7779 GTATGTATGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8411 original size:29 final size:30
Alignment explanation
Indices: 8379--8449 Score: 92
Period size: 29 Copynumber: 2.4 Consensus size: 30
8369 TATCATTATC
8379 AAAATATTATATCTATAATTTTA-T-AAATA
1 AAAATATTATAT-TATAATTTTATTAAAATA
*
8408 AAAATATTACTATTATTATTTTATTAAAATA
1 AAAATATTA-TATTATAATTTTATTAAAATA
*
8439 AAATTATTATA
1 AAAATATTATA
8450 AATTATATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
29 18 0.49
30 6 0.16
31 13 0.35
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (30 bp):
AAAATATTATATTATAATTTTATTAAAATA
Found at i:8465 original size:41 final size:40
Alignment explanation
Indices: 8418--8526 Score: 100
Period size: 41 Copynumber: 2.8 Consensus size: 40
8408 AAAATATTAC
8418 TATTATTATTTTATTAAAATAAAATTATTATAAATTATAT
1 TATTATTATTTTATTAAAATAAAATTATTATAAATTATAT
** * * * **
8458 TAATTATTATTAAAATGAGAATAATA-TATTATTGATTATAT
1 T-ATTATTATT-TTATTAAAATAAAATTATTATAAATTATAT
8499 TA--ATTA-TTTATTAAAATAATAATTATTA
1 TATTATTATTTTATTAAAATAA-AATTATTA
8527 AATATTAAAA
Statistics
Matches: 53, Mismatches: 12, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
36 8 0.15
37 2 0.04
38 9 0.17
40 2 0.04
41 23 0.43
42 9 0.17
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.50
Consensus pattern (40 bp):
TATTATTATTTTATTAAAATAAAATTATTATAAATTATAT
Found at i:8521 original size:19 final size:19
Alignment explanation
Indices: 8422--8525 Score: 65
Period size: 19 Copynumber: 5.3 Consensus size: 19
8412 TATTACTATT
8422 ATTATTTTATTAAAATAA-A
1 ATTA-TTTATTAAAATAATA
*
8441 ATTA-TTA-TAAATTATATTA
1 ATTATTTATTAAA--ATAATA
8460 ATTA-TTATTAAAATGAGAATA
1 ATTATTTATTAAAAT---AATA
** *
8481 A-TATATTATTGATTATATTA
1 ATTAT-TTATT-AAAATAATA
8501 ATTATTTATTAAAATAATA
1 ATTATTTATTAAAATAATA
8520 ATTATT
1 ATTATT
8526 AAATATTAAA
Statistics
Matches: 66, Mismatches: 8, Indels: 22
0.69 0.08 0.23
Matches are distributed among these distances:
16 4 0.06
17 3 0.05
18 5 0.08
19 24 0.36
20 15 0.23
21 7 0.11
22 5 0.08
23 3 0.05
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (19 bp):
ATTATTTATTAAAATAATA
Found at i:8532 original size:22 final size:22
Alignment explanation
Indices: 8507--8551 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
8497 ATTAATTATT
*
8507 TATTAAAATAATA-ATTATTAAA
1 TATTAAAA-AATATAATATTAAA
8529 TATTAAAAAATATAATATTAAA
1 TATTAAAAAATATAATATTAAA
8551 T
1 T
8552 TAAAATTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (22 bp):
TATTAAAAAATATAATATTAAA
Found at i:8564 original size:78 final size:79
Alignment explanation
Indices: 8413--8567 Score: 176
Period size: 78 Copynumber: 2.0 Consensus size: 79
8403 AAATAAAAAT
** * *
8413 ATTACTATTATTATTTTATTAAAATAAAATTATTATAAATTATATTAATTATTATTAAAATGAGA
1 ATTACTATTATTATTTTATTAAAATAAAATTATTATAAATTATAAAAATTAATATTAAAATGAAA
8478 ATAATATATTATTG
66 ATAATATATTATTG
8492 ATTA-TATTAATTA-TTTATTAAAATAATAATTATTA-AATATTA-AAAAATATAATATT-AAAT
1 ATTACTATT-ATTATTTTATTAAAATAA-AATTATTATAA-ATTATAAAAAT-TAATATTAAAAT
* **
8552 TAAAATTTTATATTAT
62 GAAAATAATATATTAT
8568 ATTTTTAAAG
Statistics
Matches: 65, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
78 39 0.60
79 26 0.40
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.48
Consensus pattern (79 bp):
ATTACTATTATTATTTTATTAAAATAAAATTATTATAAATTATAAAAATTAATATTAAAATGAAA
ATAATATATTATTG
Found at i:14841 original size:16 final size:16
Alignment explanation
Indices: 14820--14858 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
14810 CTGGAATGTT
14820 TCTGAAAGAATTAAAA
1 TCTGAAAGAATTAAAA
* *
14836 TCTGAAGGAATTAGAA
1 TCTGAAAGAATTAAAA
14852 TCTGAAA
1 TCTGAAA
14859 CCTGTTTGGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.49, C:0.08, G:0.18, T:0.26
Consensus pattern (16 bp):
TCTGAAAGAATTAAAA
Found at i:15496 original size:29 final size:29
Alignment explanation
Indices: 15459--15542 Score: 107
Period size: 29 Copynumber: 2.9 Consensus size: 29
15449 AATTTTTTTA
*
15459 AAAAGAAAATCCGACCCGATCCCGAAATTT
1 AAAA-AAAACCCGACCCGATCCCGAAATTT
* **
15489 AAAAAAAACCCGACCTGAATATC-AAATTT
1 AAAAAAAACCCGACCCG-ATCCCGAAATTT
15518 AAAAAAAACCCGACCCGATCCCGAA
1 AAAAAAAACCCGACCCGATCCCGAA
15543 TTTTTTTTTA
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
28 3 0.07
29 35 0.78
30 7 0.16
ACGTcount: A:0.48, C:0.27, G:0.11, T:0.14
Consensus pattern (29 bp):
AAAAAAAACCCGACCCGATCCCGAAATTT
Found at i:16673 original size:14 final size:15
Alignment explanation
Indices: 16654--16682 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
16644 GGGACAACTC
16654 GGTAAAAAAA-AAAA
1 GGTAAAAAAAGAAAA
16668 GGTAAAAAAAGAAAA
1 GGTAAAAAAAGAAAA
16683 TAAAAGGGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.07
Consensus pattern (15 bp):
GGTAAAAAAAGAAAA
Found at i:20977 original size:18 final size:17
Alignment explanation
Indices: 20954--20988 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
20944 AAAAGTTCGT
20954 TAAAGTTGAAAGAAGAGA
1 TAAAGTTGAAAG-AGAGA
20972 TAAAGTTGAAAGAGAGA
1 TAAAGTTGAAAGAGAGA
20989 AGGAGCGTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.54, C:0.00, G:0.29, T:0.17
Consensus pattern (17 bp):
TAAAGTTGAAAGAGAGA
Found at i:21682 original size:10 final size:9
Alignment explanation
Indices: 21665--21689 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
21655 TAATAAAGAT
21665 ATAAAAAAA
1 ATAAAAAAA
21674 ATAAAAAAA
1 ATAAAAAAA
21683 ATAAAAA
1 ATAAAAA
21690 GATATATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (9 bp):
ATAAAAAAA
Found at i:21990 original size:23 final size:22
Alignment explanation
Indices: 21956--21999 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
21946 GGAGAGAGGG
*
21956 AAAAATATATAATAATAATAGA
1 AAAAATAAATAATAATAATAGA
*
21978 AAAAATTAAATAATAATTATAG
1 AAAAA-TAAATAATAATAATAG
22000 CGTATAAAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.30
Consensus pattern (22 bp):
AAAAATAAATAATAATAATAGA
Found at i:24105 original size:105 final size:105
Alignment explanation
Indices: 23983--24441 Score: 882
Period size: 105 Copynumber: 4.4 Consensus size: 105
23973 TATTGTTCAG
23983 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAACC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAACC
*
24048 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGT
*
24088 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAAAAATGTTTGTTGACAACC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAACC
* *
24153 AGTGGTCCTTTCGTCGTGAAGTTGAACTTGCGTTGTCTGT
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGT
24193 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAACC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAACC
24258 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGT
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGT
24298 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAACC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAACC
24363 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGT
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGT
24403 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG
24442 GGTAAAACCT
Statistics
Matches: 347, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
105 347 1.00
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.36
Consensus pattern (105 bp):
AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTTGAGAAATGTTTGTTGACAACC
AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGT
Found at i:25246 original size:51 final size:51
Alignment explanation
Indices: 25191--25287 Score: 140
Period size: 51 Copynumber: 1.9 Consensus size: 51
25181 TTCTTTTCTC
* ** *
25191 TTTTTTCTTTTTCAATTTAGGGTGCCCTTTCGGGTTTTCACCCTAAAAGTT
1 TTTTTTCTTTTTCAACTTAGGACGCCCTCTCGGGTTTTCACCCTAAAAGTT
* *
25242 TTTTTTTTTTTTCAACTTAGGACGCCCTCTCGGGTTTTCATCCTAA
1 TTTTTTCTTTTTCAACTTAGGACGCCCTCTCGGGTTTTCACCCTAA
25288 GCGAAGTATT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 40 1.00
ACGTcount: A:0.15, C:0.22, G:0.14, T:0.48
Consensus pattern (51 bp):
TTTTTTCTTTTTCAACTTAGGACGCCCTCTCGGGTTTTCACCCTAAAAGTT
Found at i:34707 original size:20 final size:20
Alignment explanation
Indices: 34669--34712 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
34659 ATGGTTAGTA
*
34669 AAATAAAAATAAATGGAAAT
1 AAATAAAAATAAATAGAAAT
34689 AAATAAAAATAACA-AGAAAT
1 AAATAAAAATAA-ATAGAAAT
34709 AAAT
1 AAAT
34713 GGCAATAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 21 0.95
21 1 0.05
ACGTcount: A:0.73, C:0.02, G:0.07, T:0.18
Consensus pattern (20 bp):
AAATAAAAATAAATAGAAAT
Found at i:38172 original size:13 final size:13
Alignment explanation
Indices: 38137--38165 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
38127 GGAGCATTCG
38137 TTTATAATTGATT
1 TTTATAATTGATT
38150 TTTATAATTGATT
1 TTTATAATTGATT
38163 TTT
1 TTT
38166 GAAATTGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.66
Consensus pattern (13 bp):
TTTATAATTGATT
Found at i:39312 original size:17 final size:17
Alignment explanation
Indices: 39290--39322 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
39280 TTTTTTCATT
39290 AAGTTTTCATTTAATAA
1 AAGTTTTCATTTAATAA
*
39307 AAGTTTTTATTTAATA
1 AAGTTTTCATTTAATA
39323 TTATAATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.52
Consensus pattern (17 bp):
AAGTTTTCATTTAATAA
Found at i:40629 original size:23 final size:23
Alignment explanation
Indices: 40612--40662 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
40602 AATAACTGAT
40612 TAGGTAGCGCTTATATAATGTAA
1 TAGGTAGCGCTTATATAATGTAA
* **
40635 TATGTAGCGCTTATATAATAAAA
1 TAGGTAGCGCTTATATAATGTAA
40658 TAGGT
1 TAGGT
40663 TAATTACTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.37, C:0.08, G:0.20, T:0.35
Consensus pattern (23 bp):
TAGGTAGCGCTTATATAATGTAA
Found at i:40901 original size:131 final size:131
Alignment explanation
Indices: 40662--40924 Score: 427
Period size: 131 Copynumber: 2.0 Consensus size: 131
40652 ATAAAATAGG
* * *
40662 TTAATTACTTAATTTTTTATTACAACATATTAGGTAAACGCTTAAAATGTTACTAAGGATAACAT
1 TTAATTACTTAATTTGTTATTACAACATATTAGGTAAACGCCTAAAATGTTACCAAGGATAACAT
* * *
40727 AACCAGTTAATTATTGGAAACATTATCAAGCACAATAACATATTAGGTAGCGCTTATATAATGTA
66 AACCAGTTAATTACTAGAAACATTATCAAGCACAATAACATATTAGGTAGCGCTTATATAACGTA
40792 A
131 A
*
40793 TTAATTATTTAATTTGTTATTACAACATATTAGGTAAACGCCTAAAATGTTACCAAGGATAACAT
1 TTAATTACTTAATTTGTTATTACAACATATTAGGTAAACGCCTAAAATGTTACCAAGGATAACAT
* * * *
40858 AACCGGTTAATTACTAGAAACATTATCAAGCACAATAATATATTAGGTATCGTTTATATAACGTA
66 AACCAGTTAATTACTAGAAACATTATCAAGCACAATAACATATTAGGTAGCGCTTATATAACGTA
40923 A
131 A
40924 T
1 T
40925 AGGTAGCGCT
Statistics
Matches: 121, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
131 121 1.00
ACGTcount: A:0.41, C:0.13, G:0.11, T:0.35
Consensus pattern (131 bp):
TTAATTACTTAATTTGTTATTACAACATATTAGGTAAACGCCTAAAATGTTACCAAGGATAACAT
AACCAGTTAATTACTAGAAACATTATCAAGCACAATAACATATTAGGTAGCGCTTATATAACGTA
A
Found at i:40918 original size:23 final size:23
Alignment explanation
Indices: 40892--40943 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 23
40882 ATCAAGCACA
* * *
40892 ATAATATATTAGGTATCGTTTAT
1 ATAATATAATAGGTAGCGCTTAT
**
40915 ATAACGTAATAGGTAGCGCTTAT
1 ATAATATAATAGGTAGCGCTTAT
40938 ATAATA
1 ATAATA
40944 AAATTGGTTG
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (23 bp):
ATAATATAATAGGTAGCGCTTAT
Found at i:41024 original size:157 final size:158
Alignment explanation
Indices: 40796--41086 Score: 431
Period size: 157 Copynumber: 1.8 Consensus size: 158
40786 AATGTAATTA
* *
40796 ATTATTTAATTTGTTATTACAACATATTAGGTAAACGCCTAAAATGTTACCAAGGATAACATAAC
1 ATTATTTAATTTGTTATTACAACATATTAGGTAAACGACTAAAATGTTACCAAAGATAACATAAC
* * * * * * **
40861 CGGTTAATTACTAGAAACATTATCAAGCACAATAATATATTAGGTATCGTTTATATAACGTAATA
66 CAGTTAATTAATAGAAACATTATCAAGCACAATAACATATTAAGTAGCGCTTATATAACAAAATA
40926 GGTAGCGCTTATATAATAAAATTGGTTG
131 GGTAGCGCTTATATAATAAAATTGGTTG
* *
40954 ATTATTTAATTTGTTATTACAACATATTATGTAAAC-ACTTAAATGTTACCAAAGATAACATAAC
1 ATTATTTAATTTGTTATTACAACATATTAGGTAAACGACTAAAATGTTACCAAAGATAACATAAC
* * * *
41018 CAGTTAATTAATGGAAACATTATTAAGCATAATAACATATTAAGTAGCGCTTATGTAACAAAATA
66 CAGTTAATTAATAGAAACATTATCAAGCACAATAACATATTAAGTAGCGCTTATATAACAAAATA
41083 GGTA
131 GGTA
41087 ATTACTTACT
Statistics
Matches: 117, Mismatches: 16, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
157 82 0.70
158 35 0.30
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.34
Consensus pattern (158 bp):
ATTATTTAATTTGTTATTACAACATATTAGGTAAACGACTAAAATGTTACCAAAGATAACATAAC
CAGTTAATTAATAGAAACATTATCAAGCACAATAACATATTAAGTAGCGCTTATATAACAAAATA
GGTAGCGCTTATATAATAAAATTGGTTG
Found at i:41349 original size:74 final size:72
Alignment explanation
Indices: 41155--41390 Score: 332
Period size: 72 Copynumber: 3.2 Consensus size: 72
41145 AAAATTTAAA
* * *
41155 CTACCTATTACATTAAAATACCTA-TCGGTTTTTTTAAGGTTGTTAATACTGTAAACGGTAAAAA
1 CTACCTATTACATTAAAATATCTACTC-GTTTTTTTAAGGTTGCTAATAATGTAAACGGTAAAAA
41219 AAATAGGCG
65 AAATA-GCG
* * *
41228 CTACCTATTACATTAAAATATTTAC-CGGTTTTTTAAGGTTGCTAATAATGTAAACGATAAAAAA
1 CTACCTATTACATTAAAATATCTACTCGTTTTTTTAAGGTTGCTAATAATGTAAACGGTAAAAAA
*
41292 AATAGTG
66 AATAGCG
* *
41299 ATACCTATTACATTAAAATATCTACTAGTTTTTTTTTAAGGTTGCTAATAATGTAAACGGTAAAA
1 CTACCTATTACATTAAAATATCTACTCG--TTTTTTTAAGGTTGCTAATAATGTAAACGGTAAAA
41364 AAAATAAGCG
64 AAAAT-AGCG
41374 CTACCTATTACATTAAA
1 CTACCTATTACATTAAA
41391 CTACATACCA
Statistics
Matches: 144, Mismatches: 14, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
71 25 0.17
72 39 0.27
73 23 0.16
74 38 0.26
75 19 0.13
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (72 bp):
CTACCTATTACATTAAAATATCTACTCGTTTTTTTAAGGTTGCTAATAATGTAAACGGTAAAAAA
AATAGCG
Found at i:41671 original size:3 final size:3
Alignment explanation
Indices: 41663--41713 Score: 66
Period size: 3 Copynumber: 16.7 Consensus size: 3
41653 TTTCATCCCG
* *
41663 TTA TTA TTA TTA TTA TTA TCA TTA TTA TTA TTA TTTA TTA ATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA
*
41709 ATA TT
1 TTA TT
41714 GCTTTTGTAG
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
3 38 0.93
4 3 0.07
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:46879 original size:13 final size:12
Alignment explanation
Indices: 46848--46881 Score: 52
Period size: 11 Copynumber: 2.8 Consensus size: 12
46838 TATTTCGCCT
46848 GAAAAATGAATG
1 GAAAAATGAATG
46860 G-AAAATGAATG
1 GAAAAATGAATG
46871 GAAAAAATGAA
1 G-AAAAATGAA
46882 AAAAAAAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 11 0.55
12 1 0.05
13 8 0.40
ACGTcount: A:0.62, C:0.00, G:0.24, T:0.15
Consensus pattern (12 bp):
GAAAAATGAATG
Found at i:46896 original size:22 final size:22
Alignment explanation
Indices: 46871--46921 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
46861 AAAATGAATG
46871 GAAAAAATGA-AAAAAAAAGAAA
1 GAAAAAATGAGAAAAAAAA-AAA
*
46893 GAAAAAATGAGGAAAAAGAAAAA
1 GAAAAAATGA-GAAAAAAAAAAA
46916 GAAAAA
1 GAAAAA
46922 TAAAAGAAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 10 0.38
23 9 0.35
24 7 0.27
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.04
Consensus pattern (22 bp):
GAAAAAATGAGAAAAAAAAAAA
Found at i:46908 original size:23 final size:22
Alignment explanation
Indices: 46871--46921 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 22
46861 AAAATGAATG
46871 GAAAAAATGAAAAAAA-AAGAAA
1 GAAAAAATGAAAAAAAGAA-AAA
*
46893 GAAAAAATGAGGAAAAAGAAAAA
1 GAAAAAATGA-AAAAAAGAAAAA
46916 GAAAAA
1 GAAAAA
46922 TAAAAGAAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 10 0.38
23 14 0.54
24 2 0.08
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.04
Consensus pattern (22 bp):
GAAAAAATGAAAAAAAGAAAAA
Found at i:48306 original size:66 final size:66
Alignment explanation
Indices: 48067--48841 Score: 1337
Period size: 66 Copynumber: 11.8 Consensus size: 66
48057 TTCGATCCCA
* *
48067 ATTCAATTGATCAACTTCTCCAAGATTTGATATTCCCTTTAGAGTAAGTGGAACAAGTCTGCTTC
1 ATTCAATGGATCAACTTCTCCAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCTGCTTC
48132 G
66 G
48133 ATTCAATGGATCAAACTTCTCCAAGATTTG--ATTCCCTTCAGAGTAAGTGGAACAAGTCTGCTT
1 ATTCAATGGATC-AACTTCTCCAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCTGCTT
48196 CG
65 CG
*
48198 ATTC-ATGGATCAACTTCTCCAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCTACTTC
1 ATTCAATGGATCAACTTCTCCAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCTGCTTC
48262 G
66 G
*
48263 ATTCAATGGATCAACTTCTCCAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCTACTTC
1 ATTCAATGGATCAACTTCTCCAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCTGCTTC
48328 G
66 G
*
48329 ATTCAATGGATCAACTTCTCCAAGATTTGATATTCCCTTCAGAGAAAGTGGAACAAGTCTGCTTC
1 ATTCAATGGATCAACTTCTCCAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCTGCTTC
48394 G
66 G
*
48395 ATTCAATGGATCAACTTCTCCAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCTACTTC
1 ATTCAATGGATCAACTTCTCCAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCTGCTTC
48460 G
66 G
48461 ATTCAATGGATCAACTTCTCCAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCTGCTTC
1 ATTCAATGGATCAACTTCTCCAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCTGCTTC
48526 G
66 G
* *
48527 ATTCAATGGATCAACTTCTCCAAGATTTGATATTCCCTTCAGAGTAAGTGGAATAAATCTGCTTC
1 ATTCAATGGATCAACTTCTCCAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCTGCTTC
48592 G
66 G
*
48593 ATTCAATGGATCAACTTCTCCAAGATTTGATATTCCCTTCAAAGTAAGTGGAACAAGTCTGCTTC
1 ATTCAATGGATCAACTTCTCCAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCTGCTTC
48658 G
66 G
*
48659 ATTCAATGGATCAACTTCTCCAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTATGCTTC
1 ATTCAATGGATCAACTTCTCCAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCTGCTTC
48724 G
66 G
* * * *
48725 ATTCAATGGATCAATTTCTCCAAGATTTGATATTCCATTCAGAGTAAGTGGAACAAGGCTGCTTT
1 ATTCAATGGATCAACTTCTCCAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCTGCTTC
48790 G
66 G
* * *
48791 ATTCAATGAATCAACTT-TCCCAGATCTGATATTCCC-TCAGAAG-AAGTGGAA
1 ATTCAATGGATCAACTTCTCCAAGATTTGATATTCCCTTCAG-AGTAAGTGGAA
48842 TAGATCCCTC
Statistics
Matches: 679, Mismatches: 25, Indels: 12
0.95 0.03 0.02
Matches are distributed among these distances:
63 17 0.03
64 19 0.03
65 94 0.14
66 532 0.78
67 17 0.03
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (66 bp):
ATTCAATGGATCAACTTCTCCAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCTGCTTC
G
Found at i:48940 original size:111 final size:111
Alignment explanation
Indices: 48774--49242 Score: 636
Period size: 111 Copynumber: 4.2 Consensus size: 111
48764 CAGAGTAAGT
* * *
48774 GGAACAAGGCTGCTTTGATTCAATGAATCAACTTTCCCAGATCTGATATTCCCTCAGAAGAAGTG
1 GGAACAAGTCTACCTTGATTCAATGAATCAACTTTCCCAGATCTGATATTCCCTCAGAAGAAGTG
* * *
48839 GAATAGATCCCTCTCTTTCAAGATTTGGTATTCCTTGAGTGACAGC
66 GAACAGATCCCTCTCTTTCAAGATTTGATATTCCCTGAGTGACAGC
*
48885 GGAACAAGTCTACCTTGATTCAATGAATCAACTTTCCCAGATCTGATATTCCCTCAGAGGAAGTG
1 GGAACAAGTCTACCTTGATTCAATGAATCAACTTTCCCAGATCTGATATTCCCTCAGAAGAAGTG
* *
48950 GAACATAT-CC-CTCTTTCAAGATTTGATATTCCCTGAATGACAGC
66 GAACAGATCCCTCTCTTTCAAGATTTGATATTCCCTGAGTGACAGC
* * * * *
48994 GGAACAAGTCTACCTTGATTCAATAAATCAACTTTCCCAGATATGATATTCCCTCATAGGAAGCG
1 GGAACAAGTCTACCTTGATTCAATGAATCAACTTTCCCAGATCTGATATTCCCTCAGAAGAAGTG
* * *
49059 GAACAGATCCCTCTCTTTTAAGATTTGATATTCCCTGAGCGACAGT
66 GAACAGATCCCTCTCTTTCAAGATTTGATATTCCCTGAGTGACAGC
* * *
49105 GGAACAAGTCTACCCTGATTCAATGGATCAACTTTCCTAGATCTGATATATTCCCTCAGAAGAAG
1 GGAACAAGTCTACCTTGATTCAATGAATCAACTTTCCCAGATCTG--ATATTCCCTCAGAAGAAG
** * * * * **
49170 TGGAACAGATCAAATCTCTTTCAAGATTTGATATTTCATAAGTGATAAT
64 TGGAACAGATC-CCTCTCTTTCAAGATTTGATATTCCCTGAGTGACAGC
*
49219 GGAACAAGTCTACCCTGATTCAAT
1 GGAACAAGTCTACCTTGATTCAAT
49243 CTTCCCTGAA
Statistics
Matches: 318, Mismatches: 35, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
109 99 0.31
110 4 0.01
111 137 0.43
113 26 0.08
114 52 0.16
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (111 bp):
GGAACAAGTCTACCTTGATTCAATGAATCAACTTTCCCAGATCTGATATTCCCTCAGAAGAAGTG
GAACAGATCCCTCTCTTTCAAGATTTGATATTCCCTGAGTGACAGC
Found at i:49451 original size:3 final size:3
Alignment explanation
Indices: 49443--49490 Score: 69
Period size: 3 Copynumber: 15.3 Consensus size: 3
49433 TTTCATCCCG
*
49443 TTA TTA TTA TTA TTA TTA TTA TCA TTA TTA TTA TTTA TTA TTAA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TT-A TTA
49490 T
1 T
49491 ATTGCTTTTG
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
3 35 0.85
4 6 0.15
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:51328 original size:19 final size:18
Alignment explanation
Indices: 51293--51332 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
51283 CTCAAAGTGG
* *
51293 ATTATTTTATTTTTTTAAC
1 ATTATTTTATATATTT-AC
51312 ATTATTTTATATATTTAC
1 ATTATTTTATATATTTAC
51330 ATT
1 ATT
51333 TTCTTTGACA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (18 bp):
ATTATTTTATATATTTAC
Found at i:51358 original size:30 final size:29
Alignment explanation
Indices: 51301--51358 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 29
51291 GGATTATTTT
*
51301 ATTTTTTTAACATTATTTTATATATTTAC
1 ATTTTTTTAACATTATTTTATACATTTAC
*
51330 ATTTTCTTTGACATTATTTGTAT-CATTTA
1 ATTTT-TTTAACATTATTT-TATACATTTA
51359 TTAATTAGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 5 0.20
30 17 0.68
31 3 0.12
ACGTcount: A:0.28, C:0.09, G:0.03, T:0.60
Consensus pattern (29 bp):
ATTTTTTTAACATTATTTTATACATTTAC
Done.