Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008724.1 Hibiscus syriacus cultivar Beakdansim tig00111783_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5289199
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 18 of 23
Found at i:4020073 original size:130 final size:131
Alignment explanation
Indices: 4019764--4020075 Score: 350
Period size: 130 Copynumber: 2.4 Consensus size: 131
4019754 GTAATTAGCT
* * *
4019764 GCGTTTATATCCAAAAACGCCACTATAGATCTGACCTTTTGCAGCGTTTGT-GTCAAAAAACGCC
1 GCGTTTGTATCCAAAAACGCCACTATAGATCTGACCTTTTGCGGCGTTTTTAGTCAAAAAACGCC
* * * * * * ** *
4019828 GCTATATATCTAACCTTTTGCGGCGTATTTTCCCCAAAAACCCAGCATAGATCTTGACCTTTTGT
66 GCTAGAGAACTAACATTTTGCGGCGTATTGTACCCAAAAACCCAGCATAGATCTCAACCTTTTGC
4019893 G
131 G
* * * *
4019894 GCGTTTGTATCCAACAACGCCGCTATATATCT-ACCCTTTTGCGGTGTTTTTAG-C-AAAAACGC
1 GCGTTTGTATCCAAAAACGCCACTATAGATCTGA-CCTTTTGCGGCGTTTTTAGTCAAAAAACGC
* *
4019956 CGCTAGAGAACTTGACATTTTGCGGCGT-TTGTATCCAAAAACGCC-GCTATAGATCTCAACCTT
65 CGCTAGAGAAC-TAACATTTTGCGGCGTATTGTACCCAAAAAC-CCAGC-ATAGATCTCAACCTT
4020019 TTGCG
127 TTGCG
* *
4020024 GCGTTTGT-TCCAAAAACGACACTATAGATCTTGACTTTTTGCGGCGTTTTTA
1 GCGTTTGTATCCAAAAACGCCACTATAGATC-TGACCTTTTGCGGCGTTTTTA
4020076 TATCACAACT
Statistics
Matches: 151, Mismatches: 24, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
129 48 0.32
130 101 0.67
131 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.32
Consensus pattern (131 bp):
GCGTTTGTATCCAAAAACGCCACTATAGATCTGACCTTTTGCGGCGTTTTTAGTCAAAAAACGCC
GCTAGAGAACTAACATTTTGCGGCGTATTGTACCCAAAAACCCAGCATAGATCTCAACCTTTTGC
G
Found at i:4028656 original size:7 final size:7
Alignment explanation
Indices: 4028644--4028686 Score: 86
Period size: 7 Copynumber: 6.1 Consensus size: 7
4028634 CCGTACTAAA
4028644 ACCAAGC
1 ACCAAGC
4028651 ACCAAGC
1 ACCAAGC
4028658 ACCAAGC
1 ACCAAGC
4028665 ACCAAGC
1 ACCAAGC
4028672 ACCAAGC
1 ACCAAGC
4028679 ACCAAGC
1 ACCAAGC
4028686 A
1 A
4028687 AAACAAGAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 36 1.00
ACGTcount: A:0.44, C:0.42, G:0.14, T:0.00
Consensus pattern (7 bp):
ACCAAGC
Found at i:4034119 original size:31 final size:31
Alignment explanation
Indices: 4034084--4034155 Score: 144
Period size: 31 Copynumber: 2.3 Consensus size: 31
4034074 TGACTTAAAT
4034084 TCAAAATGATTCAATAAAAAACTAACTTGAA
1 TCAAAATGATTCAATAAAAAACTAACTTGAA
4034115 TCAAAATGATTCAATAAAAAACTAACTTGAA
1 TCAAAATGATTCAATAAAAAACTAACTTGAA
4034146 TCAAAATGAT
1 TCAAAATGAT
4034156 CTAACCCATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.54, C:0.12, G:0.07, T:0.26
Consensus pattern (31 bp):
TCAAAATGATTCAATAAAAAACTAACTTGAA
Found at i:4037922 original size:82 final size:82
Alignment explanation
Indices: 4037832--4038125 Score: 340
Period size: 82 Copynumber: 3.6 Consensus size: 82
4037822 GAAGACATTT
* *
4037832 CTGCTCTACCATTCATTCACGGGAAATCAAACTTGATCTGTGCCTCTTTTTCGGGTAGACAAATC
1 CTGCTCTACCATACATTCAGGGGAAATCAAACTTGATCTGTGCCTCTTTTTCGGGTAGACAAATC
4037897 CATGTTGGAATACGTGC
66 CATGTTGGAATACGTGC
* * * * *
4037914 CTACTCTACCATACATTTAGGGGCAATCAAACTTGATATGTGCCTCTTTTTCGGGTAGAAAAATC
1 CTGCTCTACCATACATTCAGGGGAAATCAAACTTGATCTGTGCCTCTTTTTCGGGTAGACAAATC
* * * * *
4037979 AATGTTGTAAGACTTGT
66 CATGTTGGAATACGTGC
* * * *
4037996 CTGCT-TCACCATACACTCAGGTGAAATCAGAC-TGAATCTGTGCCTCTTTTTTGGGTAGACAAA
1 CTGCTCT-ACCATACATTCAGGGGAAATCAAACTTG-ATCTGTGCCTCTTTTTCGGGTAGACAAA
* *
4038059 TCCATGTTGGAATATGTTC
64 TCCATGTTGGAATACGTGC
* ** * * *
4038078 CTGCTCCACCATTTATTCAGGGGAAATCAGACTGGATTTGTGCCTCTT
1 CTGCTCTACCATACATTCAGGGGAAATCAAACTTGATCTGTGCCTCTT
4038126 CTTCAAGTAG
Statistics
Matches: 173, Mismatches: 35, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
81 3 0.02
82 169 0.98
83 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (82 bp):
CTGCTCTACCATACATTCAGGGGAAATCAAACTTGATCTGTGCCTCTTTTTCGGGTAGACAAATC
CATGTTGGAATACGTGC
Found at i:4039043 original size:45 final size:44
Alignment explanation
Indices: 4038965--4039098 Score: 126
Period size: 45 Copynumber: 3.0 Consensus size: 44
4038955 TCCTCTTTTG
* * * *
4038965 AGAAAGTCAAGAATCACAACATTGAAAGATTGACTTCTCTTTACA
1 AGAAAGTCAAGAAT-ACAACACTAAAAGGTTGACTTCTCTTCACA
* * * **
4039010 AGAAAGTCAAGAATAGCATCACTAAAAGGTTGACGTCTCTCCATG
1 AGAAAGTCAAGAATA-CAACACTAAAAGGTTGACTTCTCTTCACA
* *
4039055 AGAAAGTCAATGACA-ACACCACTAAAAGGTTGATTTCTCTTCAC
1 AGAAAGTCAA-GA-ATACAACACTAAAAGGTTGACTTCTCTTCAC
4039099 GAAAGAGTCA
Statistics
Matches: 72, Mismatches: 14, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
44 1 0.01
45 67 0.93
46 3 0.04
47 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.25
Consensus pattern (44 bp):
AGAAAGTCAAGAATACAACACTAAAAGGTTGACTTCTCTTCACA
Found at i:4041066 original size:101 final size:104
Alignment explanation
Indices: 4040886--4041094 Score: 307
Period size: 101 Copynumber: 2.0 Consensus size: 104
4040876 CTGAATTCAG
* * * *
4040886 TAATCACCTTTATTAGGCTAGCTGAATCTTATCCATAAAGCCGGGGTGTTGAACCAATTGCTCTA
1 TAATCACCTTTATCAGGCTAGCTGAATCTTATCCATAAAGCCAGGGCGTTGAACCAATTACTCTA
* *
4040951 GAGGAAAAGTTCAAGCTTTATTG-A-ATATAT-ATATTA
66 GAGGAAAAGCTCAAGCTTTATTGTATAAATATAATATTA
* *
4040987 TAATCACCTTTATCAGGTTAGCTGAATCTTATCCATAAAGCCAGGGCGTTTAACCAATTACTCTA
1 TAATCACCTTTATCAGGCTAGCTGAATCTTATCCATAAAGCCAGGGCGTTGAACCAATTACTCTA
* *
4041052 GAGGGACAGCTCAAGCTTTATTGTATAAATATAATATTA
66 GAGGAAAAGCTCAAGCTTTATTGTATAAATATAATATTA
4041091 TAAT
1 TAAT
4041095 ATGGGTATAC
Statistics
Matches: 95, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
101 79 0.83
102 1 0.01
103 5 0.05
104 10 0.11
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Consensus pattern (104 bp):
TAATCACCTTTATCAGGCTAGCTGAATCTTATCCATAAAGCCAGGGCGTTGAACCAATTACTCTA
GAGGAAAAGCTCAAGCTTTATTGTATAAATATAATATTA
Found at i:4044937 original size:114 final size:114
Alignment explanation
Indices: 4044806--4045030 Score: 450
Period size: 114 Copynumber: 2.0 Consensus size: 114
4044796 TTAGTACAAC
4044806 TTTATTTGTTAATCAAATTACAAATCATAATGCAACAAAACTTATTTAAAACCAAACAATGGATC
1 TTTATTTGTTAATCAAATTACAAATCATAATGCAACAAAACTTATTTAAAACCAAACAATGGATC
4044871 AAAAACCAAATTAGAACGAACTTATAACTATCACCTGCAAAGACAACTA
66 AAAAACCAAATTAGAACGAACTTATAACTATCACCTGCAAAGACAACTA
4044920 TTTATTTGTTAATCAAATTACAAATCATAATGCAACAAAACTTATTTAAAACCAAACAATGGATC
1 TTTATTTGTTAATCAAATTACAAATCATAATGCAACAAAACTTATTTAAAACCAAACAATGGATC
4044985 AAAAACCAAATTAGAACGAACTTATAACTATCACCTGCAAAGACAA
66 AAAAACCAAATTAGAACGAACTTATAACTATCACCTGCAAAGACAA
4045031 TTAACTAATC
Statistics
Matches: 111, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
114 111 1.00
ACGTcount: A:0.48, C:0.18, G:0.07, T:0.26
Consensus pattern (114 bp):
TTTATTTGTTAATCAAATTACAAATCATAATGCAACAAAACTTATTTAAAACCAAACAATGGATC
AAAAACCAAATTAGAACGAACTTATAACTATCACCTGCAAAGACAACTA
Found at i:4048082 original size:15 final size:15
Alignment explanation
Indices: 4048064--4048105 Score: 75
Period size: 15 Copynumber: 2.8 Consensus size: 15
4048054 TAATTATATT
4048064 AACAATAAAAATAAA
1 AACAATAAAAATAAA
4048079 AACAATAAAAATAAA
1 AACAATAAAAATAAA
*
4048094 AATAATAAAAAT
1 AACAATAAAAAT
4048106 CCCGGACAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.79, C:0.05, G:0.00, T:0.17
Consensus pattern (15 bp):
AACAATAAAAATAAA
Found at i:4048653 original size:83 final size:80
Alignment explanation
Indices: 4048514--4048680 Score: 280
Period size: 83 Copynumber: 2.0 Consensus size: 80
4048504 AACATATACG
*
4048514 AAAGTTTTTGCATTTAAATGACACGTTTTTGTTTCTCTCACCGTTTTCGGTAATGATCATATGTA
1 AAAGTTTTTGCATTTAAATGACACGTTTTTGTTTCTCTCACCGTTTTCGGTAATG---ATAGGTA
*
4048579 TGCTAGTGTATTACTCCT
63 TGCCAGTGTATTACTCCT
4048597 AAAGTTTTTGCATTTAAATGACACGTTTTTGTTTCTCTCACCGTTTTCGGTAATGATAGGTATGC
1 AAAGTTTTTGCATTTAAATGACACGTTTTTGTTTCTCTCACCGTTTTCGGTAATGATAGGTATGC
*
4048662 CAGTGTATTTCTCCT
66 CAGTGTATTACTCCT
4048677 AAAG
1 AAAG
4048681 ATAGGTTAGA
Statistics
Matches: 81, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
80 26 0.32
83 55 0.68
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.43
Consensus pattern (80 bp):
AAAGTTTTTGCATTTAAATGACACGTTTTTGTTTCTCTCACCGTTTTCGGTAATGATAGGTATGC
CAGTGTATTACTCCT
Found at i:4052527 original size:20 final size:19
Alignment explanation
Indices: 4052490--4052550 Score: 52
Period size: 20 Copynumber: 3.1 Consensus size: 19
4052480 GTATCGATCC
*
4052490 AAAACGAT-ATACCAGGTAA
1 AAAACGATAAAACC-GGTAA
* * *
4052509 AAATATGATAAAATCGGTATC
1 AAA-ACGATAAAACCGGTA-A
4052530 AAAACGATAAAACCGGTAA
1 AAAACGATAAAACCGGTAA
4052549 AA
1 AA
4052551 GGTTACCGGA
Statistics
Matches: 32, Mismatches: 7, Indels: 6
0.71 0.16 0.13
Matches are distributed among these distances:
19 5 0.16
20 21 0.66
21 6 0.19
ACGTcount: A:0.54, C:0.13, G:0.15, T:0.18
Consensus pattern (19 bp):
AAAACGATAAAACCGGTAA
Found at i:4052599 original size:180 final size:180
Alignment explanation
Indices: 4052294--4052765 Score: 650
Period size: 182 Copynumber: 2.6 Consensus size: 180
4052284 TCGATCCAAA
* * *
4052294 TTAAAAATGTGTCGATCC-AAACGATATAACAGGT-AAACTATGACAAAACCGGTAT-AGAAATG
1 TTAAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCA-AAATG
* * * *
4052356 ATAAAACC-GT-AAAGCGCTACCGAATACATTTAAAGTGTCGGTACTTTAATATAAGGATCGACA
65 ATAAAACCGGTAAAAG-GATACCGGATATA-TTAAAGTGTCGATACTTTAATATAAGGATCGACA
*
4052419 CTTCGTGAATTTAAAAGAGAAACAGTTTTAAATCCTATAAAGTGTCGATACTT
128 CTTCGTGAATTTAAAAGAGAAACAGTTTTAAAGCCTATAAAGTGTCGATACTT
* * *
4052472 TTAAAAATGTATCGATCCAAAACGATATACCAGGTAAAAATATGATAAAATCGGTATCAAAACGA
1 TTAAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGA
*
4052537 TAAAACCGGTAAAAGGTTACCGGATATATTAACAGTGTCGATACTTT-ATATAAGGATCGACACT
66 TAAAACCGGTAAAAGGATACCGGATATATTAA-AGTGTCGATACTTTAATATAAGGATCGACACT
* ** *
4052601 TTGTGAATTTAAAAGAGAAACAGTTTTAGCGCCTATAATGTGTCGATACTT
130 TCGTGAATTTAAAAGAGAAACAGTTTTAAAGCCTATAAAGTGTCGATACTT
* * *
4052652 TAAAAAAAATATATCGATCCACAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAAT
1 T--TAAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAAT
* *
4052717 GATAAAACCGGTAAAATGATACCAGATATATTGAAAGTGTCGATACTTT
64 GATAAAACCGGTAAAAGGATACCGGATATATT-AAAGTGTCGATACTTT
4052766 CGTAAGTACG
Statistics
Matches: 261, Mismatches: 24, Indels: 14
0.87 0.08 0.05
Matches are distributed among these distances:
178 17 0.07
179 15 0.06
180 98 0.38
181 26 0.10
182 103 0.39
183 2 0.01
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.27
Consensus pattern (180 bp):
TTAAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGA
TAAAACCGGTAAAAGGATACCGGATATATTAAAGTGTCGATACTTTAATATAAGGATCGACACTT
CGTGAATTTAAAAGAGAAACAGTTTTAAAGCCTATAAAGTGTCGATACTT
Found at i:4052709 original size:20 final size:19
Alignment explanation
Indices: 4052686--4052732 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
4052676 CGATATAACA
4052686 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
*
4052706 GGTATCAAAATGATAAAACC
1 GGTA-AAAAATGATAAAACC
4052726 GGTAAAA
1 GGTAAAA
4052733 TGATACCAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.53, C:0.11, G:0.17, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:4052734 original size:17 final size:19
Alignment explanation
Indices: 4052695--4052737 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
4052685 AGGTAAAAAT
4052695 ATGATAAAACCGGTATCAAA
1 ATGATAAAACCGG-ATCAAA
4052715 ATGATAAAACCGG-T-AAA
1 ATGATAAAACCGGATCAAA
4052732 ATGATA
1 ATGATA
4052738 CCAGATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.39
18 1 0.04
20 13 0.57
ACGTcount: A:0.51, C:0.12, G:0.16, T:0.21
Consensus pattern (19 bp):
ATGATAAAACCGGATCAAA
Found at i:4054962 original size:20 final size:21
Alignment explanation
Indices: 4054937--4054979 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 21
4054927 AAGACAATCA
4054937 AGAGTCGAAGAGA-ACTTGAG
1 AGAGTCGAAGAGACACTTGAG
*
4054957 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGACACTTGAG
4054978 AG
1 AG
4054980 GCATAAGGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.40, C:0.12, G:0.33, T:0.16
Consensus pattern (21 bp):
AGAGTCGAAGAGACACTTGAG
Found at i:4055055 original size:33 final size:33
Alignment explanation
Indices: 4055013--4055078 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
4055003 AAATAGATGG
* *
4055013 AGTGGTGAAAGAAGTAGAGGTGTTGAGTGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTCAGGGGTGA
* *
4055046 AGTGGTGAAAGAAGTTGGGGTGTTCAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTCAGGGGTGA
4055079 TATTAAGATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.27, C:0.02, G:0.47, T:0.24
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTCAGGGGTGA
Found at i:4056858 original size:19 final size:19
Alignment explanation
Indices: 4056834--4056882 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
4056824 AATGTAGGGT
4056834 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
4056853 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
*
4056872 TATTTTTGTAT
1 TAATTTTGTAT
4056883 GTGAATAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.57
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:4057505 original size:193 final size:197
Alignment explanation
Indices: 4056998--4058148 Score: 1831
Period size: 193 Copynumber: 5.9 Consensus size: 197
4056988 CAATATGGCC
* *
4056998 AACAGGGTGCAACCATAAAGTGTCGAACCATATATAAAAAGTGTCGATCCTAAAAACATCGAAAC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCG-AAC
* **
4057063 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAGGTATACCAATTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
* *
4057128 GAATATGTCTAAATAATGTGTCGATACTTGTTTAGTTTGTGTCGATTTTTTTGGTCCAGAATGAA
130 GAATATGTCTAAATAATGTGTCGACACTTGTTTAGTTTGTGTCGATATTTTTGGTCCAG-A-GAA
4057193 TGGAA
193 TGGAA
*
4057198 AACAGGGTGCAACCATAAAGTGTCGATTCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
4057263 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
* *
4057328 AATATGTCTAAATAATGTATCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGA-AATGG
131 AATATGTCTAAATAATGTGTCGACACTTGTTTAGTTTGTGTCGATATTTTTGGTCCAGAGAATGG
4057392 -A
196 AA
*
4057393 AA-AGTGTGCAACCAT-AAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAAACATCGAAAC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCG-AAC
*
4057455 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCAGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
4057520 GAATATGTCTAAATAATGTGTCGACACTTGTTTAGTTTGTGTCGATATTTTTGGTCCAGA-ATGA
130 GAATATGTCTAAATAATGTGTCGACACTTGTTTAGTTTGTGTCGATATTTTTGGTCCAGAGA--A
4057584 TGGAA
193 TGGAA
*
4057589 AACAGGGTGCAA-CATAAAGTGTCGATCCATATATAAAAAGTGGCGATCCCAAAAACATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
*
4057653 C-AAAGTATAATGTAATATGT-ATTTTTCAATCTAACCGGTACAAGTATACCGATTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
*
4057716 AATATGTCTAAATAATGT-TCGACACTTGTTT-GTTTGTGTCGATATTTTTGGTCCATAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTTGTTTAGTTTGTGTCGATATTTTTGGTCCA-GA-GAAT
4057779 GGAA
194 GGAA
4057783 AACAGGGT--AACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
*
4057846 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATATCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
* * ****
4057911 AATATGTCTAAATAATGTGTCGACACCAT-TTAAAACAGTGTCGATATTTTTGGTCCAGAATGAA
131 AATATGTCTAAATAATGTGTCGACA-CTTGTTTAGTTTGTGTCGATATTTTTGGTCCAG-A-GAA
4057975 TGGAA
193 TGGAA
** *
4057980 AACAATGTGCAACCATAAGGTGTCGATCC--ATATAAAAAGTGTCGATCCCAAAAACATC-AACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
4058042 C-AAAGTATAATGT-A-ATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
4058104 AATATGTCTAAATAATGTGTCGACACTT-TTTAGTTTGTGTCGATA
131 AATATGTCTAAATAATGTGTCGACACTTGTTTAGTTTGTGTCGATA
4058149 CTAATTTAAA
Statistics
Matches: 892, Mismatches: 40, Indels: 46
0.91 0.04 0.05
Matches are distributed among these distances:
192 41 0.05
193 291 0.33
194 60 0.07
195 137 0.15
196 44 0.05
197 98 0.11
198 25 0.03
199 138 0.15
200 58 0.07
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (197 bp):
AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTTGTTTAGTTTGTGTCGATATTTTTGGTCCAGAGAATGG
AA
Found at i:4057891 original size:390 final size:392
Alignment explanation
Indices: 4056998--4058148 Score: 1889
Period size: 390 Copynumber: 2.9 Consensus size: 392
4056988 CAATATGGCC
* *
4056998 AACAGGGTGCAACCATAAAGTGTCGAACCATATATAAAAAGTGTCGATCCTAAAAACATCGAAAC
1 AACAGGGT--AACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAC
* *
4057063 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAGGTATACCAATTTTATGAGA
64 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCAGTTTTATGAGA
* *
4057128 GAATATGTCTAAATAATGTGTCGATACTTGTTTAGTTTGTGTCGATTTTTTTGGTCCAGAATGAA
129 GAATATGTCTAAATAATGTGTCGACACTTGTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAA
*
4057193 TGGAAAACAGGGTGCAACCATAAAGTGTCGATTCATATATAAAAAGTGTCGATCCCAAAAACATC
194 TGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATC
4057258 GAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTAT
259 GAACCC-AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTAT
*
4057323 GAGAGAATATGTCTAAATAATGTATCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAA
323 GAGAGAATATGTCTAAATAATGTATCGACAC-TTTTTAGTTTGTGTCGATATTTTTGGTCCAAAA
4057388 ATGGAA
387 ATGGAA
** * *
4057394 AAGTGTGCAACCAT-AAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAAACATCGAAACCC
1 AACAGGGTAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAACCC
4057457 AAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCAGTTTTATGAGAGA
66 AAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCAGTTTTATGAGAGA
4057522 ATATGTCTAAATAATGTGTCGACACTTGTTTAGTTTGTGTCGATATTTTTGGTCCAGAATG-ATG
131 ATATGTCTAAATAATGTGTCGACACTTGTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
*
4057586 GAAAACAGGGTGCAA-CATAAAGTGTCGATCCATATATAAAAAGTGGCGATCCCAAAAACATCGA
196 GAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGA
*
4057650 ACCCAAAGTATAATGTAATATGT-ATTTTTCAATCTAACCGGTACAAGTATACCGATTTTATGAG
261 ACCCAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAG
4057714 AGAATATGTCTAAATAATGT-TCGACACTTGTTT-GTTTGTGTCGATATTTTTGGTCCATAATGA
326 AGAATATGTCTAAATAATGTATCGACACTT-TTTAGTTTGTGTCGATATTTTTGGTCCA-AA--A
4057777 ATGGAA
387 ATGGAA
4057783 AACAGGGTAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCG-AACCC
1 AACAGGGTAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAACCC
* *
4057847 AAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATATCGGTTTTATGAGAGA
66 AAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCAGTTTTATGAGAGA
* * ****
4057912 ATATGTCTAAATAATGTGTCGACACCAT-TTAAAACAGTGTCGATATTTTTGGTCCAGAATGAAT
131 ATATGTCTAAATAATGTGTCGACA-CTTGTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAAT
** *
4057976 GGAAAACAATGTGCAACCATAAGGTGTCGATCC--ATATAAAAAGTGTCGATCCCAAAAACATC-
195 GGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCG
4058038 AACCCAAAGTATAATGT-A-ATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGA
260 AACCCAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGA
*
4058101 GAGAATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATA
325 GAGAATATGTCTAAATAATGTATCGACACTTTTTAGTTTGTGTCGATA
4058149 CTAATTTAAA
Statistics
Matches: 712, Mismatches: 31, Indels: 31
0.92 0.04 0.04
Matches are distributed among these distances:
386 26 0.04
387 15 0.02
388 124 0.17
389 75 0.11
390 217 0.30
391 61 0.09
392 167 0.23
393 17 0.02
394 6 0.01
396 4 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (392 bp):
AACAGGGTAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAACCC
AAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCAGTTTTATGAGAGA
ATATGTCTAAATAATGTGTCGACACTTGTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
GAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGA
ACCCAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAG
AGAATATGTCTAAATAATGTATCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAAAAATGG
AA
Found at i:4059617 original size:12 final size:12
Alignment explanation
Indices: 4059595--4059681 Score: 77
Period size: 12 Copynumber: 7.3 Consensus size: 12
4059585 CAAGCGGTCA
*
4059595 ATGAAGATGAAG
1 ATGACGATGAAG
*
4059607 CTGACGATGAAG
1 ATGACGATGAAG
*
4059619 ATGACGATGATG
1 ATGACGATGAAG
*
4059631 ATGATGATGAAG
1 ATGACGATGAAG
*
4059643 CT-ACGATGAAG
1 ATGACGATGAAG
* * *
4059654 ATGATGACGATG
1 ATGACGATGAAG
* *
4059666 ATGATGATGATG
1 ATGACGATGAAG
4059678 ATGA
1 ATGA
4059682 TCCAAACAAG
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
11 9 0.15
12 52 0.85
ACGTcount: A:0.38, C:0.07, G:0.32, T:0.23
Consensus pattern (12 bp):
ATGACGATGAAG
Found at i:4059632 original size:3 final size:3
Alignment explanation
Indices: 4059612--4059682 Score: 72
Period size: 3 Copynumber: 24.0 Consensus size: 3
4059602 TGAAGCTGAC
* * * * * *
4059612 GAT GAA GAT GAC GAT GAT GAT GAT GAT GAA GCT -AC GAT GAA GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
*
4059659 GAC GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT
4059683 CCAAACAAGT
Statistics
Matches: 53, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.37, C:0.06, G:0.32, T:0.25
Consensus pattern (3 bp):
GAT
Found at i:4060865 original size:16 final size:16
Alignment explanation
Indices: 4060844--4060876 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
4060834 TATCCACAAC
*
4060844 AAGTGTCGATTTAAAA
1 AAGTGTCGATTGAAAA
4060860 AAGTGTCGATTGAAAA
1 AAGTGTCGATTGAAAA
4060876 A
1 A
4060877 TGTAATAGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.45, C:0.06, G:0.21, T:0.27
Consensus pattern (16 bp):
AAGTGTCGATTGAAAA
Found at i:4061254 original size:23 final size:23
Alignment explanation
Indices: 4061223--4061295 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
4061213 ATAGGTAAAA
*
4061223 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
4061246 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
4061269 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
4061292 ATAT
1 ATAT
4061296 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:4061696 original size:22 final size:23
Alignment explanation
Indices: 4061644--4061706 Score: 92
Period size: 22 Copynumber: 2.8 Consensus size: 23
4061634 ATAGGTAAAA
*
4061644 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
4061667 ATATAATGTAATAGGTATCG-TT
1 ATATAATGTAATAGGTAGCGCTT
*
4061689 TTATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
4061707 TGGTATATTG
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
22 18 0.50
23 18 0.50
ACGTcount: A:0.35, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:4064885 original size:20 final size:23
Alignment explanation
Indices: 4064858--4064910 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 23
4064848 TAAAATATGA
4064858 TAATAGGTAGCG-CT-TATAATG
1 TAATAGGTAGCGTCTATATAATG
* *
4064879 T-ATAGGTATCGTTTATATAATG
1 TAATAGGTAGCGTCTATATAATG
4064901 TAATAGGTAG
1 TAATAGGTAG
4064911 TGGTTATATT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 9 0.35
21 2 0.08
22 8 0.31
23 7 0.27
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.38
Consensus pattern (23 bp):
TAATAGGTAGCGTCTATATAATG
Found at i:4064917 original size:23 final size:22
Alignment explanation
Indices: 4064872--4064919 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 22
4064862 AGGTAGCGCT
*
4064872 TATAATGTATAGGTATCGTTTA
1 TATAATGTATAGGTATCGGTTA
4064894 TATAATGTAATAGGTAGT-GGTTA
1 TATAATGT-ATAGGTA-TCGGTTA
4064917 TAT
1 TAT
4064920 TGTAAAGTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 8 0.35
23 14 0.61
24 1 0.04
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.44
Consensus pattern (22 bp):
TATAATGTATAGGTATCGGTTA
Found at i:4065289 original size:23 final size:23
Alignment explanation
Indices: 4065263--4065326 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
4065253 AATAGGTAAA
*
4065263 ATATGATGTAATAGGTAGCACTT
1 ATATAATGTAATAGGTAGCACTT
* **
4065286 ATATAATGTAATAGGTATCTTTT
1 ATATAATGTAATAGGTAGCACTT
4065309 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
4065327 TGGTTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.05, G:0.19, T:0.39
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCACTT
Found at i:4065717 original size:23 final size:23
Alignment explanation
Indices: 4065686--4065758 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
4065676 ATAGGTAAAA
*
4065686 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
4065709 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
4065732 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
4065755 ATAT
1 ATAT
4065759 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:4065775 original size:839 final size:825
Alignment explanation
Indices: 4064587--4066513 Score: 3120
Period size: 839 Copynumber: 2.3 Consensus size: 825
4064577 GGTATATACA
4064587 TTTTGA-TGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTT-TTTTTACG--
1 TTTTGAGTGAGTTTTAAGATATTAA-TTAGTAATTATAGGCGTCTAATGATTTTCTTTTTACGTT
* * * *
4064648 A-TATATATA-TA-TAAATT-TAAAGTCTAAATATATTTTATAAATATCAAAACAATCAAATAAT
65 ACGATATATATTATTAAATTAAAAATTCTAAATATTTTTTA-AAATATCAAAACAATCAAATAAT
*
4064709 TTTTTGTGCAATAAAATTATTAAATT-ATATTGTAGGTGGAAAACATG-AA-ACTATTAAAAAAA
129 TTTTTGTGCAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAA
*
4064771 TTGAAACATAAAATACATAACTTTAAAAGAAGTATCGATCC-TTTTTATAAAAGTATGGACACTT
194 TTGAAACATAAATTACATAACTTT-AAAGAAGTATCGATCCTTTTTTATAAAAGTATGGACACTT
4064835 TCAATATAATAGGTAAAATATGATAATAGGTAGCGCTTATAATGTATAGGTATCGTTTATATAAT
258 TCAATATAATAGGTAAAATATGATAATAGGTAGCGCTTATAATGTATAGGTATCGTTTATATAAT
4064900 GTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAA-AGTCTATACTTTTTTCAC
323 GTAATAGGTAGTGGTTATATTGTAAAGTATCTATCC-TTTTATAAAGAGTCTATACTTTTTTCAC
*
4064964 TGTGGAAAACATTAATTTAATGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATA
387 TGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAG-TTTAAGATATTAA-TTAGTAATTATA
4065029 GGC-TCTAATGATTTC-TTTTTACGTTACGATATATA-TATTATTAAATTAAAAATT-TAAATAT
450 GGCGTCTAATGATTTCTTTTTTACGTTACGATATATATTA-TATTAAATT-AAAATTCTAAATAT
**
4065090 TATTTTATAAAATATCAAAAC-ATCAAATAATTTTTTGT-GTAATGAAATTATTAAATTAATATT
513 TATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTACAAATGAAATTATT-AATTAATATT
4065153 GTAGGTGGAAAAC-TGAAACACTA-TTAAAAAAAATTGAAACA-AATTACATAACTTTAAACA-A
577 GTAGGTGGAAAACATGAAACA-TACTTAAAAAAAATTGAAACATAA-TACATAACTTTAAA-AGA
4065214 AGTATCGATCCTTTTTATAAAAAGTATGG-AC-TTCA-ATATAATAGGTAAAATATGATGTAATA
639 AGTATCGATCCTTTTTATAAAAAGTATGGAACTTTCATATAT-ATAGGTAAAATATGATGTAATA
*
4065276 GGTAGCACTTATATAATGTAATAGGTATCTTTTATATAATGTAATAGGTAGTGGTTATATTGTAA
703 GGTAGCACTTATATAA--TAATAGGTATC-GTTATATAATGTAATA-GTAGTGG-T-TATTGTAA
* *
4065341 AGTATCTATCCTTTTTTATAAAAGTGTCTATATTTTTTTCACTGTGGAAAACATTAA-TTAAGGT
762 AATATCTA----TTTTTATAAAAGTGTCTATACTTTTTTCACTGTGGAAAACATTAATTTAA-GT
4065405 TATC
822 TATC
4065409 TTTTGAGTGAGTTTTAAGATATTAATTAGTAATTATAGGCGTCTAATGATTTTCTTTTTACGTTA
1 TTTTGAGTGAGTTTTAAGATATTAATTAGTAATTATAGGCGTCTAATGATTTTCTTTTTACGTTA
4065474 CGATATATTATTATTAAATTAAAAATTCTAAATATTTTTTAAAATATCAAAACAATCAAATAATT
66 CGATATA-TATTATTAAATTAAAAATTCTAAATATTTTTTAAAATATCAAAACAATCAAATAATT
4065539 TTTTGTGCAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAT
130 TTTTGTGCAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAT
4065604 TGAAAACATAAATTACATAACTTTAAAGAAGTATCGATCCTTTTTTATAAAAGTATGGACACTTT
195 TG-AAACATAAATTACATAACTTTAAAGAAGTATCGATCCTTTTTTATAAAAGTATGGACACTTT
4065669 CAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTAT
259 CAATATAATAGGT-AAAATATGA--TAATAGGTAGCGC-T-TATAATGT-ATAGGTATCGTTTAT
*
4065734 ATAATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTATAAAGTGTCTATACTTTTT
318 ATAATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTATAAAGAGTCTATACTTTTT
*
4065799 TCACTGTGGAAAATATTAATTTAAGGTTATCTTTTGAGTGAGTTTAAGATATTAATTAGTAATTA
383 TCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTAAGATATTAATTAGTAATTA
4065864 TAGGCGTCTAATGATTTCTTTTTTACGTTACGATATATATTATATTAAATTAAAATTCTAAATAT
448 TAGGCGTCTAATGATTTCTTTTTTACGTTACGATATATATTATATTAAATTAAAATTCTAAATAT
4065929 TATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTACAAATGAAATTATTAATTAATATTG
513 TATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTACAAATGAAATTATTAATTAATATTG
4065994 TAGGTGGAAAACATGAAACATACTTAAAAAAAATTGAAACATAATACATAACTTTAAAAGAAGTA
578 TAGGTGGAAAACATGAAACATACTTAAAAAAAATTGAAACATAATACATAACTTTAAAAGAAGTA
4066059 TCGATCCTTTTTATAAAAAGTATGGACACTTTCATATATATAGGTAAAATATGATGTAATAGGTA
643 TCGATCCTTTTTATAAAAAGTATGGA-ACTTTCATATATATAGGTAAAATATGATGTAATAGGTA
*
4066124 GCGCTTATATAATAATAGGTATCGTTATATAATGTAATAGTAGTGGTTATTGTAAAATATCTATT
707 GCACTTATATAATAATAGGTATCGTTATATAATGTAATAGTAGTGGTTATTGTAAAATATCTATT
*
4066189 TTTATAAAAGTGTTTATACTTTTTTCACTGTGGAAAACATTAATTTAAGTTATC
772 TTTATAAAAGTGTCTATACTTTTTTCACTGTGGAAAACATTAATTTAAGTTATC
*
4066243 TTTTGAGTGAGTTTTAAGATATTATTTAGTAATTATAGGCGTCTAATGA-TTTCTTTTTTACGTT
1 TTTTGAGTGAGTTTTAAGATATTAATTAGTAATTATAGGCGTCTAATGATTTTC-TTTTTACGTT
4066307 ACGATATATATTATTAAATTAAAAATTCTAAATATTATTTTAAAATATCAAAAACAATCAAATAA
65 ACGATATATATTATTAAATTAAAAATTCTAAATATT-TTTTAAAATATC-AAAACAATCAAATAA
4066372 TTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAA
128 TTTTTTGTGC-AATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAA
*
4066437 AAATTGAAACATAAATTACATAACTTTAGAAAAAGTATCGATCCTTTTTGTA-AAAAGTATGGAC
191 AAATTGAAACATAAATTACATAACTTTA-AAGAAGTATCGATCCTTTTT-TATAAAAGTATGGAC
4066501 ACTTTCAACTATA
254 ACTTTCAA-TATA
4066514 TAATGTAATA
Statistics
Matches: 1043, Mismatches: 18, Indels: 72
0.92 0.02 0.06
Matches are distributed among these distances:
822 34 0.03
823 26 0.02
825 1 0.00
826 5 0.00
827 2 0.00
828 2 0.00
829 54 0.05
830 38 0.04
831 2 0.00
832 32 0.03
833 89 0.09
834 136 0.13
835 29 0.03
836 84 0.08
837 65 0.06
838 69 0.07
839 167 0.16
840 52 0.05
841 96 0.09
842 13 0.01
843 2 0.00
844 41 0.04
845 4 0.00
ACGTcount: A:0.40, C:0.08, G:0.12, T:0.40
Consensus pattern (825 bp):
TTTTGAGTGAGTTTTAAGATATTAATTAGTAATTATAGGCGTCTAATGATTTTCTTTTTACGTTA
CGATATATATTATTAAATTAAAAATTCTAAATATTTTTTAAAATATCAAAACAATCAAATAATTT
TTTGTGCAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATT
GAAACATAAATTACATAACTTTAAAGAAGTATCGATCCTTTTTTATAAAAGTATGGACACTTTCA
ATATAATAGGTAAAATATGATAATAGGTAGCGCTTATAATGTATAGGTATCGTTTATATAATGTA
ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTATAAAGAGTCTATACTTTTTTCACTGTG
GAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTAAGATATTAATTAGTAATTATAGGCGTC
TAATGATTTCTTTTTTACGTTACGATATATATTATATTAAATTAAAATTCTAAATATTATTTTAT
AAAATATCAAAACAATCAAATAATTTTTTGTACAAATGAAATTATTAATTAATATTGTAGGTGGA
AAACATGAAACATACTTAAAAAAAATTGAAACATAATACATAACTTTAAAAGAAGTATCGATCCT
TTTTATAAAAAGTATGGAACTTTCATATATATAGGTAAAATATGATGTAATAGGTAGCACTTATA
TAATAATAGGTATCGTTATATAATGTAATAGTAGTGGTTATTGTAAAATATCTATTTTTATAAAA
GTGTCTATACTTTTTTCACTGTGGAAAACATTAATTTAAGTTATC
Found at i:4065785 original size:19 final size:19
Alignment explanation
Indices: 4065761--4065797 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
4065751 GGTTATATTG
*
4065761 TAAAGTATCTATCCTTTTA
1 TAAAGTATCTATACTTTTA
*
4065780 TAAAGTGTCTATACTTTT
1 TAAAGTATCTATACTTTT
4065798 TTCACTGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.30, C:0.14, G:0.08, T:0.49
Consensus pattern (19 bp):
TAAAGTATCTATACTTTTA
Found at i:4066172 original size:22 final size:23
Alignment explanation
Indices: 4066107--4066173 Score: 70
Period size: 21 Copynumber: 3.1 Consensus size: 23
4066097 TATAGGTAAA
* * *
4066107 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGTGGTT
*
4066130 ATATAA--TAATAGGTA-TCGTT
1 ATATAATGTAATAGGTAGTGGTT
4066150 ATATAATGTAATA-GTAGTGGTT
1 ATATAATGTAATAGGTAGTGGTT
4066172 AT
1 AT
4066174 TGTAAAATAT
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
20 8 0.22
21 12 0.33
22 11 0.31
23 5 0.14
ACGTcount: A:0.36, C:0.04, G:0.21, T:0.39
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGGTT
Found at i:4067486 original size:14 final size:15
Alignment explanation
Indices: 4067467--4067498 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
4067457 AAGTTTACTT
4067467 TTTCTTTTA-TTTTC
1 TTTCTTTTATTTTTC
4067481 TTTCTTTTATTTTTC
1 TTTCTTTTATTTTTC
4067496 TTT
1 TTT
4067499 AAAGGTTTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.06, C:0.12, G:0.00, T:0.81
Consensus pattern (15 bp):
TTTCTTTTATTTTTC
Found at i:4069488 original size:11 final size:11
Alignment explanation
Indices: 4069468--4069501 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
4069458 ATTTTACTTT
4069468 TTTTTCTTTTTC
1 TTTTT-TTTTTC
4069480 TTTTTTTTTTC
1 TTTTTTTTTTC
4069491 TTTTGTTTTTT
1 TTTT-TTTTTT
4069502 TCAATGAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.88
Consensus pattern (11 bp):
TTTTTTTTTTC
Found at i:4070681 original size:6 final size:6
Alignment explanation
Indices: 4070660--4070705 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
4070650 TTGTACTTTA
* *
4070660 AAAAAT CAAGAAT AAAAAT -AAAAT AAAAA- CAAAAT AAAAAT AAAAA
1 AAAAAT -AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
4070706 GAACGAAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
5 9 0.27
6 19 0.58
7 5 0.15
ACGTcount: A:0.80, C:0.04, G:0.02, T:0.13
Consensus pattern (6 bp):
AAAAAT
Found at i:4070686 original size:11 final size:11
Alignment explanation
Indices: 4070660--4070704 Score: 63
Period size: 11 Copynumber: 3.9 Consensus size: 11
4070650 TTGTACTTTA
4070660 AAAAATCAAGAAT
1 AAAAAT-AA-AAT
4070673 AAAAATAAAAT
1 AAAAATAAAAT
*
4070684 AAAAACAAAAT
1 AAAAATAAAAT
4070695 AAAAATAAAA
1 AAAAATAAAA
4070705 AGAACGAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
11 22 0.73
12 2 0.07
13 6 0.20
ACGTcount: A:0.80, C:0.04, G:0.02, T:0.13
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:4070697 original size:22 final size:24
Alignment explanation
Indices: 4070660--4070704 Score: 76
Period size: 22 Copynumber: 2.0 Consensus size: 24
4070650 TTGTACTTTA
4070660 AAAAATCAAGAATAAAAATAAAAT
1 AAAAATCAAGAATAAAAATAAAAT
4070684 AAAAA-CAA-AATAAAAATAAAA
1 AAAAATCAAGAATAAAAATAAAA
4070705 AGAACGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 13 0.62
23 3 0.14
24 5 0.24
ACGTcount: A:0.80, C:0.04, G:0.02, T:0.13
Consensus pattern (24 bp):
AAAAATCAAGAATAAAAATAAAAT
Found at i:4102143 original size:40 final size:38
Alignment explanation
Indices: 4102089--4102385 Score: 403
Period size: 38 Copynumber: 7.9 Consensus size: 38
4102079 CATATAAATA
*
4102089 TTTCAAAAACTATATATTATATATATTTTCGAAAATGT
1 TTTCAAAAACTATATATTATATATATTTTCAAAAATGT
4102127 TTTCAAAAACTATATATTATATATATTTTCAAAAAATGT
1 TTTCAAAAACTATATATTATATATATTTTC-AAAAATGT
*
4102166 TTTCAAAAAC------TT-TA-CTATTTTCAAAAATGT
1 TTTCAAAAACTATATATTATATATATTTTCAAAAATGT
* *
4102196 TTTCAAAAACTATATATTATTTATATTTTCAAAAAAAGT
1 TTTCAAAAACTATATATTATATATATTTTC-AAAAATGT
* * *
4102235 TTTTAAAATCTATATACTATATATATTTTCAAAAATGT
1 TTTCAAAAACTATATATTATATATATTTTCAAAAATGT
4102273 TTTCAAAAACTATATATTATATATATTTTCAAAAAATGTT
1 TTTCAAAAACTATATATTATATATATTTTC-AAAAATG-T
* *
4102313 TTTTAAAAACTATATACTATATATATTTTCAAAAATGT
1 TTTCAAAAACTATATATTATATATATTTTCAAAAATGT
* *
4102351 TTTCAAAAACTACATATTATATATATATTCAAAAA
1 TTTCAAAAACTATATATTATATATATTTTCAAAAA
4102386 CTATACAATA
Statistics
Matches: 228, Mismatches: 19, Indels: 24
0.84 0.07 0.09
Matches are distributed among these distances:
30 18 0.08
31 7 0.03
32 2 0.01
33 2 0.01
36 2 0.01
37 1 0.00
38 103 0.45
39 64 0.28
40 29 0.13
ACGTcount: A:0.45, C:0.09, G:0.03, T:0.44
Consensus pattern (38 bp):
TTTCAAAAACTATATATTATATATATTTTCAAAAATGT
Found at i:4102355 original size:78 final size:77
Alignment explanation
Indices: 4102093--4102385 Score: 440
Period size: 78 Copynumber: 3.9 Consensus size: 77
4102083 TAAATATTTC
* *
4102093 AAAAACTATATATTATATATATTTTCGAAAATGTTTTCAAAAACTATATATTATATATATTTTCA
1 AAAAACTATATACTATATATATTTTCAAAAATGTTTTCAAAAACTATATATTATATATATTTTCA
* *
4102158 AAAAATGTTTTC
66 AAAAAAGTTTTT
*
4102170 AAAAACT-T-TAC------TATTTTCAAAAATGTTTTCAAAAACTATATATTATTTATATTTTCA
1 AAAAACTATATACTATATATATTTTCAAAAATGTTTTCAAAAACTATATATTATATATATTTTCA
4102227 AAAAAAGTTTTT
66 AAAAAAGTTTTT
*
4102239 AAAATCTATATACTATATATATTTTCAAAAATGTTTTCAAAAACTATATATTATATATATTTTCA
1 AAAAACTATATACTATATATATTTTCAAAAATGTTTTCAAAAACTATATATTATATATATTTTCA
*
4102304 AAAAATGTTTTTT
66 AAAAAAG-TTTTT
* *
4102317 AAAAACTATATACTATATATATTTTCAAAAATGTTTTCAAAAACTACATATTATATATATATTCA
1 AAAAACTATATACTATATATATTTTCAAAAATGTTTTCAAAAACTATATATTATATATATTTTCA
4102382 AAAA
66 AAAA
4102386 CTATACAATA
Statistics
Matches: 196, Mismatches: 11, Indels: 17
0.88 0.05 0.08
Matches are distributed among these distances:
69 60 0.31
70 1 0.01
71 3 0.02
75 2 0.01
76 1 0.01
77 58 0.30
78 71 0.36
ACGTcount: A:0.45, C:0.09, G:0.03, T:0.43
Consensus pattern (77 bp):
AAAAACTATATACTATATATATTTTCAAAAATGTTTTCAAAAACTATATATTATATATATTTTCA
AAAAAAGTTTTT
Found at i:4105691 original size:36 final size:35
Alignment explanation
Indices: 4105622--4105695 Score: 103
Period size: 36 Copynumber: 2.1 Consensus size: 35
4105612 ATAACCTTAT
* *
4105622 AAAAATAAAAATGAGAAAGTTCAAAAGACAAGTTGC
1 AAAAAGAAAAATGAGAAAGTTCAAAAAACAAGTT-C
* *
4105658 AAAAAGAAATATGAGAAAGTTCAAAAAATAAGTTC
1 AAAAAGAAAAATGAGAAAGTTCAAAAAACAAGTTC
4105693 AAA
1 AAA
4105696 CAGTATGCTA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
35 4 0.12
36 30 0.88
ACGTcount: A:0.61, C:0.07, G:0.15, T:0.18
Consensus pattern (35 bp):
AAAAAGAAAAATGAGAAAGTTCAAAAAACAAGTTC
Found at i:4110478 original size:28 final size:26
Alignment explanation
Indices: 4110438--4110498 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
4110428 TTCGAAAATG
*
4110438 TTTTCAAAAA-TATATATTATATATA
1 TTTTCAAAAACTATATACTATATATA
4110463 TTTTCAAAAACTATATACTATATATA
1 TTTTCAAAAACTATATACTATATATA
4110489 TTTTCAAAAA
1 TTTTCAAAAA
4110499 ATGTTTTCAA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 10 0.29
26 24 0.71
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (26 bp):
TTTTCAAAAACTATATACTATATATA
Found at i:4110485 original size:63 final size:65
Alignment explanation
Indices: 4110401--4110614 Score: 254
Period size: 77 Copynumber: 3.1 Consensus size: 65
4110391 CATACAAATA
* * *
4110401 TTTCAAAAACTATATATTATATATATTTTC-GAAAATGTTTTCAAAAA-TATATATTATATATAT
1 TTTCAAAAACTATATACTATATATATTTTCAAAAAATGTTTTCAAAAACTATATACTATATATAT
4110464 TTTCAAAAACTATATACTATATATATTTTCAAAAAATGTTTTCAAAAACTATATACTATATATAT
1 TTTCAAAAACTATATACTATATATATTTTCAAAAAATGTTTTCAAAAACTATATAC--TATATA-
4110529 TTTCAAAAATGT
63 --T-----A--T
*
4110541 TTTCAAAAACTATATATTATATATATTTTCAAAAAATGATTTT-AAAAACTATATACTATATATA
1 TTTCAAAAACTATATACTATATATATTTTCAAAAAATG-TTTTCAAAAACTATATACTATATATA
4110605 T
65 T
4110606 TTTCAAAAA
1 TTTCAAAAA
4110615 TATTTTCAAA
Statistics
Matches: 132, Mismatches: 4, Indels: 28
0.80 0.02 0.17
Matches are distributed among these distances:
63 29 0.22
64 16 0.12
65 16 0.12
67 7 0.05
70 1 0.01
72 1 0.01
75 7 0.05
77 51 0.39
78 4 0.03
ACGTcount: A:0.46, C:0.08, G:0.02, T:0.43
Consensus pattern (65 bp):
TTTCAAAAACTATATACTATATATATTTTCAAAAAATGTTTTCAAAAACTATATACTATATATAT
Found at i:4110510 original size:39 final size:39
Alignment explanation
Indices: 4110463--4110649 Score: 303
Period size: 39 Copynumber: 4.9 Consensus size: 39
4110453 ATTATATATA
4110463 TTTTCAAAAACTATATACTATATATATTTTCAAAAAATG
1 TTTTCAAAAACTATATACTATATATATTTTCAAAAAATG
4110502 TTTTCAAAAACTATATACTATATATATTTTC-AAAAATG
1 TTTTCAAAAACTATATACTATATATATTTTCAAAAAATG
*
4110540 TTTTCAAAAACTATATATTATATATATTTTCAAAAAATG
1 TTTTCAAAAACTATATACTATATATATTTTCAAAAAATG
*
4110579 ATTTT-AAAAACTATATACTATATATATTTTC-AAAAATA
1 -TTTTCAAAAACTATATACTATATATATTTTCAAAAAATG
*
4110617 TTTTCAAAAACTACAT--TATATATATTTTCAAAA
1 TTTTCAAAAACTATATACTATATATATTTTCAAAA
4110650 CTATACAATA
Statistics
Matches: 140, Mismatches: 4, Indels: 10
0.91 0.03 0.06
Matches are distributed among these distances:
36 13 0.09
37 7 0.05
38 53 0.38
39 63 0.45
40 4 0.03
ACGTcount: A:0.47, C:0.10, G:0.02, T:0.42
Consensus pattern (39 bp):
TTTTCAAAAACTATATACTATATATATTTTCAAAAAATG
Found at i:4110554 original size:77 final size:76
Alignment explanation
Indices: 4110460--4110649 Score: 321
Period size: 77 Copynumber: 2.5 Consensus size: 76
4110450 TATATTATAT
4110460 ATATTTTCAAAAACTATATACTATATATATTTTCAAAAAATG-TTTTCAAAAACTATATACTATA
1 ATATTTTCAAAAACTATATA-TATATATATTTTCAAAAAATGATTTT-AAAAACTATATACTATA
4110524 TATATTTTCAAAA
64 TATATTTTCAAAA
*
4110537 ATGTTTTCAAAAACTATATATTATATATATTTTCAAAAAATGATTTTAAAAACTATATACTATAT
1 ATATTTTCAAAAACTATATA-TATATATATTTTCAAAAAATGATTTTAAAAACTATATACTATAT
4110602 ATATTTTCAAAA
65 ATATTTTCAAAA
*
4110614 ATATTTTCAAAAACTACAT-TATATATATTTTCAAAA
1 ATATTTTCAAAAACTATATATATATATATTTTCAAAA
4110650 CTATACAATA
Statistics
Matches: 108, Mismatches: 4, Indels: 4
0.93 0.03 0.03
Matches are distributed among these distances:
75 17 0.16
77 87 0.81
78 4 0.04
ACGTcount: A:0.47, C:0.09, G:0.02, T:0.42
Consensus pattern (76 bp):
ATATTTTCAAAAACTATATATATATATATTTTCAAAAAATGATTTTAAAAACTATATACTATATA
TATTTTCAAAA
Found at i:4110660 original size:23 final size:24
Alignment explanation
Indices: 4110614--4110668 Score: 76
Period size: 23 Copynumber: 2.3 Consensus size: 24
4110604 ATTTTCAAAA
**
4110614 ATATTTTCAAAAACTACATTATAT
1 ATATTTTCAAAAACTACACAATAT
*
4110638 ATATTTTC-AAAACTATACAATAT
1 ATATTTTCAAAAACTACACAATAT
4110661 ATATTTTC
1 ATATTTTC
4110669 CGAAAACCGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 20 0.71
24 8 0.29
ACGTcount: A:0.44, C:0.13, G:0.00, T:0.44
Consensus pattern (24 bp):
ATATTTTCAAAAACTACACAATAT
Found at i:4110701 original size:38 final size:37
Alignment explanation
Indices: 4110642--4110741 Score: 125
Period size: 38 Copynumber: 2.7 Consensus size: 37
4110632 TTATATATAT
*
4110642 TTTCAAAACTATACAATATATATTTTCCGAAAACCG-
1 TTTCAAAACTATATAATATATATTTTCCGAAAACCGA
*
4110678 TTCTCAAAACTTATATAATATATATGTTTTCGAAAACCGA
1 TT-TCAAAAC-TATATAATATATAT-TTTCCGAAAACCGA
*
4110718 TTTGAAAACTATAT-AT-TATATTTT
1 TTTCAAAACTATATAATATATATTTT
4110742 AAAAAATAGC
Statistics
Matches: 57, Mismatches: 3, Indels: 9
0.83 0.04 0.13
Matches are distributed among these distances:
35 3 0.05
36 7 0.12
37 9 0.16
38 18 0.32
39 18 0.32
40 2 0.04
ACGTcount: A:0.40, C:0.14, G:0.06, T:0.40
Consensus pattern (37 bp):
TTTCAAAACTATATAATATATATTTTCCGAAAACCGA
Found at i:4111474 original size:22 final size:22
Alignment explanation
Indices: 4111431--4111474 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
4111421 AATTATTTTT
*
4111431 AAATAATTATTTAAATAAAATA
1 AAATAATTATTTAAAAAAAATA
*
4111453 AAAT-ATTTTTTAAAAAATAATA
1 AAATAATTATTTAAAAAA-AATA
4111475 GAATTCGTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (22 bp):
AAATAATTATTTAAAAAAAATA
Found at i:4114095 original size:13 final size:13
Alignment explanation
Indices: 4114068--4114113 Score: 85
Period size: 13 Copynumber: 3.6 Consensus size: 13
4114058 TAAAAACACG
4114068 TAAAAAATAAA-T
1 TAAAAAATAAAGT
4114080 TAAAAAATAAAGT
1 TAAAAAATAAAGT
4114093 TAAAAAATAAAGT
1 TAAAAAATAAAGT
4114106 TAAAAAAT
1 TAAAAAAT
4114114 TACCTTGCTG
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
12 11 0.33
13 22 0.67
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (13 bp):
TAAAAAATAAAGT
Found at i:4117371 original size:14 final size:14
Alignment explanation
Indices: 4117352--4117387 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
4117342 TTTTTATTTA
4117352 TTTAATTTCATTCC
1 TTTAATTTCATTCC
4117366 TTTAATTTCATTCC
1 TTTAATTTCATTCC
4117380 TTTAATTT
1 TTTAATTT
4117388 TTTATTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.22, C:0.17, G:0.00, T:0.61
Consensus pattern (14 bp):
TTTAATTTCATTCC
Found at i:4117439 original size:14 final size:14
Alignment explanation
Indices: 4117352--4117441 Score: 51
Period size: 14 Copynumber: 6.5 Consensus size: 14
4117342 TTTTTATTTA
* *
4117352 TTTAATTTCATTCC
1 TTTAATTTTAGTCC
* *
4117366 TTTAATTTCATTCC
1 TTTAATTTTAGTCC
**
4117380 TTTAATTTT--TTA
1 TTTAATTTTAGTCC
* *
4117392 TTTTATTTTTG-CC
1 TTTAATTTTAGTCC
* *
4117405 TTTCATTTTTCAGTAC
1 TTT-AATTTT-AGTCC
4117421 TTTAATTTTAGTCC
1 TTTAATTTTAGTCC
4117435 TTTAATT
1 TTTAATT
4117442 ATTGCGCTTT
Statistics
Matches: 59, Mismatches: 12, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
12 9 0.15
13 3 0.05
14 37 0.63
15 6 0.10
16 4 0.07
ACGTcount: A:0.20, C:0.14, G:0.03, T:0.62
Consensus pattern (14 bp):
TTTAATTTTAGTCC
Found at i:4121841 original size:54 final size:54
Alignment explanation
Indices: 4121755--4122200 Score: 658
Period size: 54 Copynumber: 8.3 Consensus size: 54
4121745 TTAGGTACTC
* * **
4121755 TATGTGCAACCCACATAATTCATCATAAGTTGATAAACAACCATTTTGTAACTA
1 TATGTGCAACCCACAGAATTCATCATAAGTTGATGAACAACCATTTTGGCACTA
* * *
4121809 TATCTGCAACCCACAGAATTAATCATAAGTTGATGAACAACCGTTTTGGCACTA
1 TATGTGCAACCCACAGAATTCATCATAAGTTGATGAACAACCATTTTGGCACTA
* *
4121863 TAAGTGCAACCCACGGAATTCATCATAAGTTGATGAACAACCATTTTGGCACTA
1 TATGTGCAACCCACAGAATTCATCATAAGTTGATGAACAACCATTTTGGCACTA
* * *
4121917 TATGTGCAACCCACGGAATTCATCATAAGTTGATGAACAACCGTTTTGGCACTG
1 TATGTGCAACCCACAGAATTCATCATAAGTTGATGAACAACCATTTTGGCACTA
* * *
4121971 TTTGTGCAACCCACAGAATTCATCATAAGTTAATGAACAACCGTTTTGGCACTA
1 TATGTGCAACCCACAGAATTCATCATAAGTTGATGAACAACCATTTTGGCACTA
* *
4122025 TATGTGAAACCCACAAAATTCATCATAAGTTGATGAACAACCATTTTGGCACTA
1 TATGTGCAACCCACAGAATTCATCATAAGTTGATGAACAACCATTTTGGCACTA
* * * *
4122079 TATATGCAACCTAGAGAATTCATCATAAGTTGATGAACAACCATTTTGACACTA
1 TATGTGCAACCCACAGAATTCATCATAAGTTGATGAACAACCATTTTGGCACTA
** * *
4122133 TATGTGCAACCCATGGAATTCATCATAAGTTGATGAACAACCGTTTAGGCACTA
1 TATGTGCAACCCACAGAATTCATCATAAGTTGATGAACAACCATTTTGGCACTA
*
4122187 TGTGTGCAACCCAC
1 TATGTGCAACCCAC
4122201 GTAATTCTTA
Statistics
Matches: 353, Mismatches: 39, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 353 1.00
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (54 bp):
TATGTGCAACCCACAGAATTCATCATAAGTTGATGAACAACCATTTTGGCACTA
Found at i:4127696 original size:54 final size:54
Alignment explanation
Indices: 4127631--4128250 Score: 927
Period size: 54 Copynumber: 11.5 Consensus size: 54
4127621 TGTACTTTAC
4127631 GCACTATATGTGCAACCCACGGAATTCATCATAAGTTGATGAACAACCGTTTTG
1 GCACTATATGTGCAACCCACGGAATTCATCATAAGTTGATGAACAACCGTTTTG
* *
4127685 GAACTATATGTGCAACCCACGAAATTCATCATAAGTTGATGAACAACCGTTTTG
1 GCACTATATGTGCAACCCACGGAATTCATCATAAGTTGATGAACAACCGTTTTG
* ** * *
4127739 GCACTATATGTTCAACCCACAAAATTCATTATATGTTGATGAACAACCGTTTTG
1 GCACTATATGTGCAACCCACGGAATTCATCATAAGTTGATGAACAACCGTTTTG
*
4127793 GCACTTTATGTGCAACCCACGGAATTCATCATAAGTTGATGAACAACCGTTTTG
1 GCACTATATGTGCAACCCACGGAATTCATCATAAGTTGATGAACAACCGTTTTG
* *
4127847 GCACTATATGTGCAACCCACGAAATTCATTATAAGTTGATGAACAACCG-TTTG
1 GCACTATATGTGCAACCCACGGAATTCATCATAAGTTGATGAACAACCGTTTTG
* * * * *
4127900 GCACTATATGTTCAACCTATGGAATTCACCATAAGTTGATGAACAACCATTTTG
1 GCACTATATGTGCAACCCACGGAATTCATCATAAGTTGATGAACAACCGTTTTG
* * * *
4127954 GCACTATATGTTCAACCCACAGAATTCATTATATGTTGATGAACAACCGTTTTG
1 GCACTATATGTGCAACCCACGGAATTCATCATAAGTTGATGAACAACCGTTTTG
*
4128008 GCACTTTATGTGCAACCCACGGAATTCATCATAAGTTGATGAACAACCGTTTTG
1 GCACTATATGTGCAACCCACGGAATTCATCATAAGTTGATGAACAACCGTTTTG
* * * *
4128062 GCACTATATGTGCAACCCACGAAATTCATTATAAGTTGTTGAACAGCCGTTTTG
1 GCACTATATGTGCAACCCACGGAATTCATCATAAGTTGATGAACAACCGTTTTG
* * * *
4128116 GCACTATATGTTCAACCTATGGAATTCACCATAAGTTGATGAACAACCGTTTTG
1 GCACTATATGTGCAACCCACGGAATTCATCATAAGTTGATGAACAACCGTTTTG
* * * *
4128170 GCACTATATGTGCAATCCACTGAATTCATCATAAGTTAATGAACAACCGTTTAG
1 GCACTATATGTGCAACCCACGGAATTCATCATAAGTTGATGAACAACCGTTTTG
* *
4128224 GCACTATGTGTGCAACCCACGTAATTC
1 GCACTATATGTGCAACCCACGGAATTC
4128251 TTAATGAGGT
Statistics
Matches: 505, Mismatches: 60, Indels: 2
0.89 0.11 0.00
Matches are distributed among these distances:
53 46 0.09
54 459 0.91
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (54 bp):
GCACTATATGTGCAACCCACGGAATTCATCATAAGTTGATGAACAACCGTTTTG
Found at i:4128589 original size:44 final size:44
Alignment explanation
Indices: 4128530--4128613 Score: 159
Period size: 44 Copynumber: 1.9 Consensus size: 44
4128520 CATTTTTGGT
4128530 AGAAAGGTGCCACTAATGCAAGTTAGATGAATAACGATGCTGGC
1 AGAAAGGTGCCACTAATGCAAGTTAGATGAATAACGATGCTGGC
*
4128574 AGAAAGGTGCCACTAATGCAAGTTAGATGAATAATGATGC
1 AGAAAGGTGCCACTAATGCAAGTTAGATGAATAACGATGC
4128614 ATTATCGGCA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.21
Consensus pattern (44 bp):
AGAAAGGTGCCACTAATGCAAGTTAGATGAATAACGATGCTGGC
Found at i:4136178 original size:11 final size:12
Alignment explanation
Indices: 4136152--4136182 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
4136142 ACATCAATTT
4136152 AGTTAGGTGAAG
1 AGTTAGGTGAAG
4136164 AGTTAGGTG-AG
1 AGTTAGGTGAAG
4136175 AGTTAGGT
1 AGTTAGGT
4136183 ATTTGTCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.29, C:0.00, G:0.42, T:0.29
Consensus pattern (12 bp):
AGTTAGGTGAAG
Found at i:4146404 original size:21 final size:21
Alignment explanation
Indices: 4146380--4146469 Score: 74
Period size: 21 Copynumber: 4.2 Consensus size: 21
4146370 CGAAGTGCCT
*
4146380 CATAATTATCCCGAAGGACCA
1 CATAATTGTCCCGAAGGACCA
* * **
4146401 CATAGGTT-TGCACTGAAGTTCCA
1 CATA-ATTGT-C-CCGAAGGACCA
*
4146424 CATAATTGTCCCAAAGGACCA
1 CATAATTGTCCCGAAGGACCA
* *
4146445 CATAGTTGTCTCGAAGGACCA
1 CATAATTGTCCCGAAGGACCA
4146466 CATA
1 CATA
4146470 GAACCCTTGA
Statistics
Matches: 53, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
21 34 0.64
22 6 0.11
23 13 0.25
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (21 bp):
CATAATTGTCCCGAAGGACCA
Found at i:4146428 original size:44 final size:44
Alignment explanation
Indices: 4146363--4146449 Score: 129
Period size: 44 Copynumber: 2.0 Consensus size: 44
4146353 TAGCTCGTAA
* *
4146363 TTTGCACCGAAGTGCCTCATAATTATCCCGAAGGACCACATAGG
1 TTTGCACCGAAGTGCCACATAATTATCCCAAAGGACCACATAGG
* * *
4146407 TTTGCACTGAAGTTCCACATAATTGTCCCAAAGGACCACATAG
1 TTTGCACCGAAGTGCCACATAATTATCCCAAAGGACCACATAG
4146450 TTGTCTCGAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.24
Consensus pattern (44 bp):
TTTGCACCGAAGTGCCACATAATTATCCCAAAGGACCACATAGG
Found at i:4151388 original size:21 final size:21
Alignment explanation
Indices: 4151364--4151404 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
4151354 GAAGTGCCGC
4151364 ATAATTATCCCGAAA-GACCAA
1 ATAATTATCCC-AAAGGACCAA
*
4151385 ATAATTGTCCCAAAGGACCA
1 ATAATTATCCCAAAGGACCA
4151405 CATAGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.44, C:0.24, G:0.12, T:0.20
Consensus pattern (21 bp):
ATAATTATCCCAAAGGACCAA
Found at i:4151871 original size:2 final size:2
Alignment explanation
Indices: 4151864--4151890 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
4151854 TGTCATAAAT
4151864 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
4151891 TGTAGATTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4161028 original size:23 final size:23
Alignment explanation
Indices: 4160966--4161054 Score: 96
Period size: 23 Copynumber: 4.0 Consensus size: 23
4160956 ACAGCTCGTA
*
4160966 ATTTGCACAGAAGTGCCACATA-
1 ATTTGCACCGAAGTGCCACATAG
*
4160988 ATTAT-C-CCGAAAG-ACCACATAG
1 ATT-TGCACCG-AAGTGCCACATAG
*
4161010 ATTTGCACCGAAGTGCCACGTAG
1 ATTTGCACCGAAGTGCCACATAG
*
4161033 ATTTGCACCGAAGTGCCTCATA
1 ATTTGCACCGAAGTGCCACATA
4161055 ATTGTCCCGA
Statistics
Matches: 55, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
21 10 0.18
22 14 0.25
23 31 0.56
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22
Consensus pattern (23 bp):
ATTTGCACCGAAGTGCCACATAG
Found at i:4161076 original size:21 final size:21
Alignment explanation
Indices: 4161052--4161092 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
4161042 GAAGTGCCTC
* *
4161052 ATAATTGTCCCGAATGACCAA
1 ATAATTGTCCCAAAGGACCAA
4161073 ATAATTGTCCCAAAGGACCA
1 ATAATTGTCCCAAAGGACCA
4161093 CATAGAACCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.39, C:0.24, G:0.15, T:0.22
Consensus pattern (21 bp):
ATAATTGTCCCAAAGGACCAA
Found at i:4165512 original size:11 final size:11
Alignment explanation
Indices: 4165496--4165541 Score: 83
Period size: 11 Copynumber: 4.2 Consensus size: 11
4165486 ATTTATCATT
4165496 TTAAAACACAC
1 TTAAAACACAC
4165507 TTAAAACACAC
1 TTAAAACACAC
*
4165518 ATAAAACACAC
1 TTAAAACACAC
4165529 TTAAAACACAC
1 TTAAAACACAC
4165540 TT
1 TT
4165542 CTCCCCCTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
11 33 1.00
ACGTcount: A:0.54, C:0.26, G:0.00, T:0.20
Consensus pattern (11 bp):
TTAAAACACAC
Found at i:4167810 original size:23 final size:23
Alignment explanation
Indices: 4167784--4167845 Score: 106
Period size: 23 Copynumber: 2.7 Consensus size: 23
4167774 TCCCCTATGG
*
4167784 GGGGGAATCGGTTTCCATTCAAA
1 GGGGGAATCGGTTCCCATTCAAA
*
4167807 GGGGGAATCAGTTCCCATTCAAA
1 GGGGGAATCGGTTCCCATTCAAA
4167830 GGGGGAATCGGTTCCC
1 GGGGGAATCGGTTCCC
4167846 TCATGGGGGG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.23
Consensus pattern (23 bp):
GGGGGAATCGGTTCCCATTCAAA
Found at i:4167859 original size:20 final size:20
Alignment explanation
Indices: 4167830--4167867 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
4167820 CCCATTCAAA
*
4167830 GGGGGAATCGGTTCCCTCAT
1 GGGGGAATCGATTCCCTCAT
*
4167850 GGGGGGATCGATTCCCTC
1 GGGGGAATCGATTCCCTC
4167868 TGCACCAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.26, G:0.37, T:0.24
Consensus pattern (20 bp):
GGGGGAATCGATTCCCTCAT
Found at i:4175644 original size:21 final size:21
Alignment explanation
Indices: 4175620--4175660 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
4175610 GAAGTGCCAC
* *
4175620 ATAATTGTCCCGAAGGACCAA
1 ATAATTGTCCCAAAAGACCAA
4175641 ATAATTGTCCCAAAAGACCA
1 ATAATTGTCCCAAAAGACCA
4175661 CATAGAACCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.41, C:0.24, G:0.15, T:0.20
Consensus pattern (21 bp):
ATAATTGTCCCAAAAGACCAA
Found at i:4180456 original size:23 final size:23
Alignment explanation
Indices: 4180390--4180475 Score: 90
Period size: 23 Copynumber: 3.8 Consensus size: 23
4180380 ACAACTCGTA
*
4180390 ATTTGCACAGAAGTGCCACATA-
1 ATTTGCACCGAAGTGCCACATAG
*
4180412 ATTAT-C-CCAAAG-GACCACATAG
1 ATT-TGCACCGAAGTG-CCACATAG
*
4180434 ATTTGCACTGAAGTGCCACATAG
1 ATTTGCACCGAAGTGCCACATAG
*
4180457 GTTTGCACCGAAGTGCCAC
1 ATTTGCACCGAAGTGCCAC
4180476 GTAATTATCC
Statistics
Matches: 52, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
20 1 0.02
21 12 0.23
22 8 0.15
23 30 0.58
24 1 0.02
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.22
Consensus pattern (23 bp):
ATTTGCACCGAAGTGCCACATAG
Found at i:4188978 original size:21 final size:22
Alignment explanation
Indices: 4188939--4188989 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
4188929 AAATATCCCG
*
4188939 AAATAAAAAAGAAAATAAATACA
1 AAATAAAAAAG-AAATAAAAACA
* *
4188962 AAATAAAAAAG-AGTAAAAACT
1 AAATAAAAAAGAAATAAAAACA
4188983 AAATAAA
1 AAATAAA
4188990 TTAACTAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 14 0.56
23 11 0.44
ACGTcount: A:0.76, C:0.04, G:0.06, T:0.14
Consensus pattern (22 bp):
AAATAAAAAAGAAATAAAAACA
Found at i:4189468 original size:2 final size:2
Alignment explanation
Indices: 4189463--4189498 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
4189453 AATAAAACAA
4189463 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4189499 GTTAGATTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4190587 original size:2 final size:2
Alignment explanation
Indices: 4190582--4190648 Score: 84
Period size: 2 Copynumber: 33.5 Consensus size: 2
4190572 TGTTATATGT
*
4190582 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
4190624 TA TA -A TCA TA TCA T- TA TT TA TA TA T
1 TA TA TA T-A TA T-A TA TA TA TA TA TA T
4190649 GGACAAAATA
Statistics
Matches: 57, Mismatches: 4, Indels: 8
0.83 0.06 0.12
Matches are distributed among these distances:
1 2 0.04
2 51 0.89
3 4 0.07
ACGTcount: A:0.45, C:0.03, G:0.01, T:0.51
Consensus pattern (2 bp):
TA
Found at i:4191634 original size:124 final size:124
Alignment explanation
Indices: 4191271--4191634 Score: 541
Period size: 124 Copynumber: 2.9 Consensus size: 124
4191261 GTTGATCTAT
* * *
4191271 TGGGCACGATATCCTTCGTCGTGAAGTTAAAATCGTGGATGGCTCCTTCGTTGTGAAGTTGAGCT
1 TGGGCACGATATCCTTCGTCGTGAAGTTGAAATCTTGGATGGCTCATTCGTTGTGAAGTTGAGCT
* *
4191336 TTGAATTGGATATCCTTCGTTGTGAAAATGAAATCCAATCTAGAGATGGATACTACTGG
66 TTGAATTGGATATCCTTCGTTGTGAAGATGAAATCCAATCTAGAGATGTATACTACTGG
* * *
4191395 TGGGCACGATATCCTTTGTCGTGAAGTTGAAAT-TATGGATGTCTAATTCGTTGTGAAGTTGAGC
1 TGGGCACGATATCCTTCGTCGTGAAGTTGAAATCT-TGGATGGCTCATTCGTTGTGAAGTTGAGC
** * ** ** *
4191459 TTTGAATTGGATATCCTTTATTGTGAAGTTGAAATCCAATCTAGAGATGTATGTTGTTTG
65 TTTGAATTGGATATCCTTCGTTGTGAAGATGAAATCCAATCTAGAGATGTATACTACTGG
4191519 TGGGCACGATATCCTTCGTCGTGAAGTTGAAATCTTGGATGGCTCATTCGTTGTGAAGTTGAGCT
1 TGGGCACGATATCCTTCGTCGTGAAGTTGAAATCTTGGATGGCTCATTCGTTGTGAAGTTGAGCT
* * *
4191584 TTGAATTAGATATCCTTCGTTGTGAAGGTGAAATCCAATCTAGAGTTGTAT
66 TTGAATTGGATATCCTTCGTTGTGAAGATGAAATCCAATCTAGAGATGTAT
4191635 TGCTTCACCC
Statistics
Matches: 214, Mismatches: 24, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
124 213 1.00
125 1 0.00
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.36
Consensus pattern (124 bp):
TGGGCACGATATCCTTCGTCGTGAAGTTGAAATCTTGGATGGCTCATTCGTTGTGAAGTTGAGCT
TTGAATTGGATATCCTTCGTTGTGAAGATGAAATCCAATCTAGAGATGTATACTACTGG
Found at i:4191795 original size:64 final size:63
Alignment explanation
Indices: 4191707--4191944 Score: 343
Period size: 64 Copynumber: 3.7 Consensus size: 63
4191697 GTAAGTTGCT
* **
4191707 TTGTTTC-GAGTCCAATATCCTTCGTTGTGTAGTTGAAATTGACTCTGAATGAAACTCCAAAG
1 TTGTTTCTGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAATGAAACTGGAAAG
* *
4191769 TTGTTTACTGAGTCCAATATCTTTCGTTGTGAAGTTGAAATTGACTCTGAAGGAAACTGGAAAG
1 TTGTTT-CTGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAATGAAACTGGAAAG
* * * *
4191833 TTGTTTGTTGAGTCCAATATCCTTCATCGTGAAGTTAAAATTGACTCTGAATGAAACTGGAAAG
1 TTGTTT-CTGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAATGAAACTGGAAAG
* *
4191897 TTGTTTCTTGAGTCCAATATTCTTTGTTGTGAAGTTGAAATTGACTCT
1 TTGTTTC-TGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCT
4191945 ACAAGCTGTA
Statistics
Matches: 155, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
62 6 0.04
63 1 0.01
64 148 0.95
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (63 bp):
TTGTTTCTGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAATGAAACTGGAAAG
Found at i:4191846 original size:128 final size:131
Alignment explanation
Indices: 4191699--4191944 Score: 385
Period size: 128 Copynumber: 1.9 Consensus size: 131
4191689 AATCTTGAGT
* * * *
4191699 AAGTTGCTTTGTTTCGAGTCCAATATCCTTCGTTGTGTAGTTGAAATTGACTCTGAATGAAACTC
1 AAGTTGCTTTGTTTCGAGTCCAATATCCTTCATCGTGAAGTTAAAATTGACTCTGAATGAAACTC
4191764 CAAAGTTGTTTAC-TGAGTCCAATA-TCTTTCGTTGTGAAGTTGAAATTGACTCTGAAGGAAACT
66 CAAAGTTGTTT-CTTGAGTCCAATATTCTTT-GTTGTGAAGTTGAAATTGACTCTGAAGGAAACT
4191827 GGA
129 GGA
*
4191830 AAGTTG-TTTG-TT-GAGTCCAATATCCTTCATCGTGAAGTTAAAATTGACTCTGAATGAAACTG
1 AAGTTGCTTTGTTTCGAGTCCAATATCCTTCATCGTGAAGTTAAAATTGACTCTGAATGAAACTC
*
4191892 GAAAGTTGTTTCTTGAGTCCAATATTCTTTGTTGTGAAGTTGAAATTGACTCT
66 CAAAGTTGTTTCTTGAGTCCAATATTCTTTGTTGTGAAGTTGAAATTGACTCT
4191945 ACAAGCTGTA
Statistics
Matches: 107, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
127 1 0.01
128 89 0.83
129 7 0.07
130 4 0.04
131 6 0.06
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (131 bp):
AAGTTGCTTTGTTTCGAGTCCAATATCCTTCATCGTGAAGTTAAAATTGACTCTGAATGAAACTC
CAAAGTTGTTTCTTGAGTCCAATATTCTTTGTTGTGAAGTTGAAATTGACTCTGAAGGAAACTGG
A
Found at i:4197239 original size:2 final size:2
Alignment explanation
Indices: 4197232--4197277 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
4197222 TAGTAAGATA
4197232 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4197274 AT AT
1 AT AT
4197278 GACGAAAGTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4198250 original size:23 final size:23
Alignment explanation
Indices: 4198209--4198260 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
4198199 AAATGTCTTG
*
4198209 AAATAAAAAAGAAAATAAATACA
1 AAATAAAAAAGAAAATAAAAACA
* *
4198232 AAATAAAAAA-AAGAGTAAAAACC
1 AAATAAAAAAGAA-AATAAAAACA
4198255 AAATAA
1 AAATAA
4198261 GTTAACTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 2 0.08
23 23 0.92
ACGTcount: A:0.77, C:0.06, G:0.06, T:0.12
Consensus pattern (23 bp):
AAATAAAAAAGAAAATAAAAACA
Found at i:4198369 original size:13 final size:13
Alignment explanation
Indices: 4198344--4198369 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4198334 TAAACAAAAC
4198344 AAAAAATAATAAT
1 AAAAAATAATAAT
4198357 AAAAAATAATAAT
1 AAAAAATAATAAT
4198370 GTATATATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (13 bp):
AAAAAATAATAAT
Found at i:4201117 original size:16 final size:14
Alignment explanation
Indices: 4201088--4201122 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 14
4201078 CGTTCATTTA
4201088 ATAAATAAACGAAC
1 ATAAATAAACGAAC
4201102 ATAAATGAATACGAAC
1 ATAAAT-AA-ACGAAC
4201118 ATAAA
1 ATAAA
4201123 GGAACAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.32
15 2 0.11
16 11 0.58
ACGTcount: A:0.63, C:0.11, G:0.09, T:0.17
Consensus pattern (14 bp):
ATAAATAAACGAAC
Found at i:4201244 original size:13 final size:13
Alignment explanation
Indices: 4201222--4201259 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
4201212 ACAAACGAAC
*
4201222 GAACATAATAAAT
1 GAACAAAATAAAT
*
4201235 GAACACAATAAAT
1 GAACAAAATAAAT
4201248 GAACAAAATAAA
1 GAACAAAATAAA
4201260 CACAAAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.66, C:0.11, G:0.08, T:0.16
Consensus pattern (13 bp):
GAACAAAATAAAT
Found at i:4201535 original size:14 final size:14
Alignment explanation
Indices: 4201516--4201542 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
4201506 CCTATGTTCA
4201516 AACATAAATGAACG
1 AACATAAATGAACG
4201530 AACATAAATGAAC
1 AACATAAATGAAC
4201543 ATGGATGAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.15, G:0.11, T:0.15
Consensus pattern (14 bp):
AACATAAATGAACG
Found at i:4202795 original size:124 final size:124
Alignment explanation
Indices: 4202570--4203042 Score: 721
Period size: 124 Copynumber: 3.8 Consensus size: 124
4202560 CTATCCATTA
* * * *
4202570 GGCACGATATCATTCATCGTGAAGTTGAAATCGTGGATGTCTCCTTCTTTGTGAAGTTGAGCTTT
1 GGCACGATATCCTTCATCGTGAAGTTGAAATCGTGGATGGCTCATTCATTGTGAAGTTGAGCTTT
* * *
4202635 GAATTGAATATCCTTCGTTATGAAGTTGAACTCCAATCTAGAGATGGATGCTGCTTGTG
66 GAATTGGATATCCTTCGTTATGAAGTTGAAATCCAATCTAGAGATGGATGTTGCTTGTG
* * * *
4202694 GGCATGATATCCTTTATCGTGAAGTTGAAATCGTGGATGGCTCATTCGTTGTGAAGTTGATCTTT
1 GGCACGATATCCTTCATCGTGAAGTTGAAATCGTGGATGGCTCATTCATTGTGAAGTTGAGCTTT
* * *
4202759 AAATTGGATATCATTCGTCATGAAGTTGAAATCCAATCTAGAGATGGATGTTGCTTGTG
66 GAATTGGATATCCTTCGTTATGAAGTTGAAATCCAATCTAGAGATGGATGTTGCTTGTG
* * *
4202818 GGCACGATATCCTTCGTCGTGAAGTTAAAATCGTGGATGGCTCATTCCTTGTGAAGTTGAGCTTT
1 GGCACGATATCCTTCATCGTGAAGTTGAAATCGTGGATGGCTCATTCATTGTGAAGTTGAGCTTT
* * *
4202883 GAATTGGATATTCTTCATTGTGAAGTTGAAATCCAATCTAGAGATGGATGTTGCTTGTG
66 GAATTGGATATCCTTCGTTATGAAGTTGAAATCCAATCTAGAGATGGATGTTGCTTGTG
* *
4202942 GGCACGATATCCTTCATCGTGAAGTTGAAATCATGGATGACTCATTCATTGTGAAGTTGAGCTTT
1 GGCACGATATCCTTCATCGTGAAGTTGAAATCGTGGATGGCTCATTCATTGTGAAGTTGAGCTTT
* * *
4203007 GAATTAGATATCCTTCGTTGTGAAGTTGAAAACCAA
66 GAATTGGATATCCTTCGTTATGAAGTTGAAATCCAA
4203043 GGGTTGTTTC
Statistics
Matches: 315, Mismatches: 34, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
124 315 1.00
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (124 bp):
GGCACGATATCCTTCATCGTGAAGTTGAAATCGTGGATGGCTCATTCATTGTGAAGTTGAGCTTT
GAATTGGATATCCTTCGTTATGAAGTTGAAATCCAATCTAGAGATGGATGTTGCTTGTG
Found at i:4203097 original size:60 final size:60
Alignment explanation
Indices: 4203002--4203227 Score: 256
Period size: 60 Copynumber: 3.7 Consensus size: 60
4202992 GTGAAGTTGA
* * * *
4203002 GCTTTGAATTAGATATCCTTCGTTGTGAAGTTGAAAACCAAGGGTTGTTTCACCAAATTG
1 GCTTTGAGTTAGATATCCTTCGTTCTGAAGTTGAAATCCAAGAGTTGTTTCACCAAATTG
* * * * *
4203062 GTTTTGAGTTGGATATCCTTCGTCCTAAAGTTGAAATCCAATCTTGAGTAAGTTTCACCAAATTG
1 GCTTTGAGTTAGATATCCTTCGTTCTGAAGTTGAAATCCAA----GAGT-TGTTTCACCAAATTG
* *
4203127 GCTTTGAGTTAGATATCCTTCGTTCTGAAGTTGAAATCCAAGTA-TTGTTTTACCAAATTA
1 GCTTTGAGTTAGATATCCTTCGTTCTGAAGTTGAAATCCAAG-AGTTGTTTCACCAAATTG
* * * *
4203187 GCTTTGATTTGGATATCCTTCGTTGTGAAATTGAAATCCAA
1 GCTTTGAGTTAGATATCCTTCGTTCTGAAGTTGAAATCCAA
4203228 TCTTGAATAT
Statistics
Matches: 140, Mismatches: 20, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
60 83 0.59
61 2 0.01
62 1 0.01
64 3 0.02
65 51 0.36
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (60 bp):
GCTTTGAGTTAGATATCCTTCGTTCTGAAGTTGAAATCCAAGAGTTGTTTCACCAAATTG
Found at i:4203134 original size:65 final size:63
Alignment explanation
Indices: 4203047--4203233 Score: 231
Period size: 65 Copynumber: 3.0 Consensus size: 63
4203037 AACCAAGGGT
* *
4203047 TGTTTCACCAAATTGGTTTTGAGTTGGATATCCTTCGTCCTAAAGTTGAAATCCAATCTTGAG
1 TGTTTCACCAAATTGGCTTTGAGTTGGATATCCTTCGTTCTAAAGTTGAAATCCAATCTTGAG
* * *
4203110 TAAGTTTCACCAAATTGGCTTTGAGTTAGATATCCTTCGTTCTGAAGTTGAAATCCAAGTATT--
1 T--GTTTCACCAAATTGGCTTTGAGTTGGATATCCTTCGTTCTAAAGTTGAAATCCAA-TCTTGA
4203173 G
63 G
* * *
4203174 T-TTT-ACCAAATTAGCTTTGATTTGGATATCCTTCGTTGTGAAA-TTGAAATCCAATCTTGA
1 TGTTTCACCAAATTGGCTTTGAGTTGGATATCCTTCGTTCT-AAAGTTGAAATCCAATCTTGA
4203234 ATATTGTTTG
Statistics
Matches: 107, Mismatches: 11, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
59 3 0.03
60 42 0.39
61 5 0.05
63 1 0.01
64 2 0.02
65 51 0.48
66 3 0.03
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (63 bp):
TGTTTCACCAAATTGGCTTTGAGTTGGATATCCTTCGTTCTAAAGTTGAAATCCAATCTTGAG
Found at i:4203148 original size:125 final size:125
Alignment explanation
Indices: 4203002--4203233 Score: 349
Period size: 125 Copynumber: 1.9 Consensus size: 125
4202992 GTGAAGTTGA
* * * *
4203002 GCTTTGAATTAGATATCCTTCGTTGTGAAGTTGAAAACCAAGGGTTGTTTCACCAAATTGGTTTT
1 GCTTTGAATTAGATATCCTTCGTTCTGAAGTTGAAAACCAAGGATTGTTTCACCAAATTAGCTTT
4203067 GAGTTGGATATCCTTCGTCCT-AAAGTTGAAATCCAATCTTGAGTAAGTTTCACCAAATTG
66 GAGTTGGATATCCTTCGTCCTGAAA-TTGAAATCCAATCTTGAGTAAGTTTCACCAAATTG
* * * *
4203127 GCTTTGAGTTAGATATCCTTCGTTCTGAAGTTGAAATCCAAGTATTGTTTTACCAAATTAGCTTT
1 GCTTTGAATTAGATATCCTTCGTTCTGAAGTTGAAAACCAAGGATTGTTTCACCAAATTAGCTTT
* **
4203192 GATTTGGATATCCTTCGTTGTGAAATTGAAATCCAATCTTGA
66 GAGTTGGATATCCTTCGTCCTGAAATTGAAATCCAATCTTGA
4203234 ATATTGTTTG
Statistics
Matches: 95, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
125 92 0.97
126 3 0.03
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.38
Consensus pattern (125 bp):
GCTTTGAATTAGATATCCTTCGTTCTGAAGTTGAAAACCAAGGATTGTTTCACCAAATTAGCTTT
GAGTTGGATATCCTTCGTCCTGAAATTGAAATCCAATCTTGAGTAAGTTTCACCAAATTG
Found at i:4205148 original size:27 final size:27
Alignment explanation
Indices: 4205091--4205148 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 27
4205081 ATTTTGTTTC
*
4205091 TCTTTTTTTTATTTTCTCTTTGCTTTTT
1 TCTTTTTTTTATTTTCTCTTT-CTTTAT
4205119 TCTTTGTTTTT-TTTCTCTCTTT-TTTAT
1 TCTTT-TTTTTATTT-TCTCTTTCTTTAT
4205146 TCT
1 TCT
4205149 GATTGGATCT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
27 7 0.26
28 8 0.30
29 12 0.44
ACGTcount: A:0.03, C:0.16, G:0.03, T:0.78
Consensus pattern (27 bp):
TCTTTTTTTTATTTTCTCTTTCTTTAT
Found at i:4206387 original size:27 final size:27
Alignment explanation
Indices: 4206352--4206403 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
4206342 AAGAAATTTC
* *
4206352 ATGTTTATG-AAAATGCTTAAAAATGAA
1 ATGTATATGCAAAATGC-AAAAAATGAA
4206379 ATGTATATGCAAAATGCAAAAAATG
1 ATGTATATGCAAAATGCAAAAAATG
4206404 CATGATATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.50, C:0.06, G:0.15, T:0.29
Consensus pattern (27 bp):
ATGTATATGCAAAATGCAAAAAATGAA
Found at i:4207274 original size:16 final size:17
Alignment explanation
Indices: 4207249--4207281 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
4207239 ATAAAAAGTC
*
4207249 CTACCTCACATG-TTAT
1 CTACCCCACATGCTTAT
4207265 CTACCCCACATGCTTAT
1 CTACCCCACATGCTTAT
4207282 TATTCATACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.24, C:0.36, G:0.06, T:0.33
Consensus pattern (17 bp):
CTACCCCACATGCTTAT
Found at i:4208994 original size:11 final size:11
Alignment explanation
Indices: 4208978--4209003 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
4208968 AATGGAGAAT
4208978 ATCAGAATAAG
1 ATCAGAATAAG
4208989 ATCAGAATAAG
1 ATCAGAATAAG
4209000 ATCA
1 ATCA
4209004 AAAGGAAACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.12, G:0.15, T:0.19
Consensus pattern (11 bp):
ATCAGAATAAG
Found at i:4209329 original size:13 final size:13
Alignment explanation
Indices: 4209313--4209348 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
4209303 GCCCCGATTA
4209313 CCCGATTACCCGC
1 CCCGATTACCCGC
4209326 CCCGATTACCCGC
1 CCCGATTACCCGC
4209339 CCCGA-TACCC
1 CCCGATTACCC
4209349 AACCCGATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 5 0.22
13 18 0.78
ACGTcount: A:0.17, C:0.56, G:0.14, T:0.14
Consensus pattern (13 bp):
CCCGATTACCCGC
Found at i:4209499 original size:23 final size:24
Alignment explanation
Indices: 4209458--4209519 Score: 72
Period size: 23 Copynumber: 2.6 Consensus size: 24
4209448 ATATATATAT
* * * *
4209458 ATACTCGGCCCGATTCCCGGCCCA
1 ATACTCGACCCAATACCCGACCCA
4209482 ATAC-CGACCCAATACCCGACCCA
1 ATACTCGACCCAATACCCGACCCA
*
4209505 ATACTCGGCCCAATA
1 ATACTCGACCCAATA
4209520 TCCGTTTAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
23 19 0.59
24 13 0.41
ACGTcount: A:0.27, C:0.44, G:0.15, T:0.15
Consensus pattern (24 bp):
ATACTCGACCCAATACCCGACCCA
Found at i:4209502 original size:12 final size:12
Alignment explanation
Indices: 4209473--4209519 Score: 60
Period size: 12 Copynumber: 4.0 Consensus size: 12
4209463 CGGCCCGATT
*
4209473 CCCGGCCCAATA
1 CCCGACCCAATA
4209485 -CCGACCCAATA
1 CCCGACCCAATA
4209496 CCCGACCCAATA
1 CCCGACCCAATA
* *
4209508 CTCGGCCCAATA
1 CCCGACCCAATA
4209520 TCCGTTTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
11 10 0.32
12 21 0.68
ACGTcount: A:0.30, C:0.47, G:0.13, T:0.11
Consensus pattern (12 bp):
CCCGACCCAATA
Found at i:4211296 original size:33 final size:33
Alignment explanation
Indices: 4211254--4211316 Score: 126
Period size: 33 Copynumber: 1.9 Consensus size: 33
4211244 AGTTAGTTTG
4211254 ACTATATATATATATATAATTGATAATCCACCA
1 ACTATATATATATATATAATTGATAATCCACCA
4211287 ACTATATATATATATATAATTGATAATCCA
1 ACTATATATATATATATAATTGATAATCCA
4211317 ACCGTACCTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.46, C:0.13, G:0.03, T:0.38
Consensus pattern (33 bp):
ACTATATATATATATATAATTGATAATCCACCA
Found at i:4212278 original size:46 final size:46
Alignment explanation
Indices: 4212211--4212304 Score: 152
Period size: 46 Copynumber: 2.0 Consensus size: 46
4212201 TTGAAGGGTC
4212211 GAATAACAAGAGAAAAGTCGAATAAAAAGCAATGCATTCATTTGTT
1 GAATAACAAGAGAAAAGTCGAATAAAAAGCAATGCATTCATTTGTT
* * * *
4212257 GAATAACGAGAGAAAAGTCGAATATAAATCGATGCATTCATTTGTT
1 GAATAACAAGAGAAAAGTCGAATAAAAAGCAATGCATTCATTTGTT
4212303 GA
1 GA
4212305 TTATCGACAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.45, C:0.11, G:0.19, T:0.26
Consensus pattern (46 bp):
GAATAACAAGAGAAAAGTCGAATAAAAAGCAATGCATTCATTTGTT
Found at i:4212993 original size:85 final size:85
Alignment explanation
Indices: 4212890--4213059 Score: 304
Period size: 85 Copynumber: 2.0 Consensus size: 85
4212880 AGCATCAGCT
* *
4212890 CATACCACTAACATTTTAGTTTAAAGCCTAAAAAATAATGTTAACACCGAGAAACCTACTCGATA
1 CATACCACTAACAATTTAGTTTAAAGCCTAAAAAATAATGTTAACACCAAGAAACCTACTCGATA
4212955 GTACCTCTAAGGAGCATCTG
66 GTACCTCTAAGGAGCATCTG
* *
4212975 CATACCACTACCAATTTAGTTTAAAGCCTAAAAATTAATGTTAACACCAAGAAACCTACTCGATA
1 CATACCACTAACAATTTAGTTTAAAGCCTAAAAAATAATGTTAACACCAAGAAACCTACTCGATA
4213040 GTACCTCTAAGGAGCATCTG
66 GTACCTCTAAGGAGCATCTG
4213060 ACGTCCTCAA
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 81 1.00
ACGTcount: A:0.39, C:0.23, G:0.12, T:0.26
Consensus pattern (85 bp):
CATACCACTAACAATTTAGTTTAAAGCCTAAAAAATAATGTTAACACCAAGAAACCTACTCGATA
GTACCTCTAAGGAGCATCTG
Found at i:4216879 original size:88 final size:88
Alignment explanation
Indices: 4216689--4216960 Score: 382
Period size: 88 Copynumber: 3.0 Consensus size: 88
4216679 ACTGCGTCCA
* *
4216689 TAGGGCTTACCCTAAGCACAGAGCAAAAAGGGAGCCAACCTAAGGATATACCTTGGGGGCCTATG
1 TAGGG-TTACCCTAAGCACACAGC--AAAGGGAACCAACCTAAGGATATACCTT-GGGGCCTATG
* *
4216754 GGCCTACCCATGGATATCCTTAGATCAG
62 GGCC-ACCCAAGGATATCCTTAGATCCG
4216782 TAGGGTTACCCTAAGCACACAGCAAAGGGAACCAACCTAAGGATATACCTTGGGGCCTATGGGCC
1 TAGGGTTACCCTAAGCACACAGCAAAGGGAACCAACCTAAGGATATACCTTGGGGCCTATGGGCC
4216847 ACCCAAGGATATCCTTAGATCCG
66 ACCCAAGGATATCCTTAGATCCG
* * ** *
4216870 TAGGGTTACCTTAAGCACACAGCAAAGGGAACCAACCTAAGAATATGTCTTGGGGCCTATGAGCT
1 TAGGGTTACCCTAAGCACACAGCAAAGGGAACCAACCTAAGGATATACCTTGGGGCCTATGGGC-
* * *
4216935 TACCCAAGGGTATCCTTAGGTCCG
65 CACCCAAGGATATCCTTAGATCCG
4216959 TA
1 TA
4216961 AGGTCTTACC
Statistics
Matches: 166, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
88 80 0.48
89 37 0.22
90 27 0.16
92 17 0.10
93 5 0.03
ACGTcount: A:0.30, C:0.25, G:0.25, T:0.20
Consensus pattern (88 bp):
TAGGGTTACCCTAAGCACACAGCAAAGGGAACCAACCTAAGGATATACCTTGGGGCCTATGGGCC
ACCCAAGGATATCCTTAGATCCG
Found at i:4221827 original size:97 final size:97
Alignment explanation
Indices: 4221715--4221915 Score: 305
Period size: 97 Copynumber: 2.1 Consensus size: 97
4221705 ATATACCATG
* *
4221715 GGGCCTATGGTCCTACCCAAGGATATCCTTAGATCTGTAGGGTTACCCTAAGCACACAAT-AAAG
1 GGGCCTATGGGCCTACCCAAGGATATCCTTAGATCCGTAGGGTTACCCTAAGCACAC-ATCAAAG
* *
4221779 AGAACCAACCTAAGTATATACATTGGGGCCTAT
65 AGAACCAACCTAAGGATATACATTAGGGCCTAT
* * *
4221812 GGGCCTATGGGCCTACCCAAGGATATTCTTAGATCCGTAGGGTTACCTTAAGCACACATCAAAGG
1 GGGCCTATGGGCCTACCCAAGGATATCCTTAGATCCGTAGGGTTACCCTAAGCACACATCAAAGA
* *
4221877 GAACCAACCTAAGGATATTCCTTAGGGCCTAT
66 GAACCAACCTAAGGATATACATTAGGGCCTAT
4221909 GGGCCTA
1 GGGCCTA
4221916 CCCAAGGGTA
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
96 2 0.02
97 92 0.98
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.23
Consensus pattern (97 bp):
GGGCCTATGGGCCTACCCAAGGATATCCTTAGATCCGTAGGGTTACCCTAAGCACACATCAAAGA
GAACCAACCTAAGGATATACATTAGGGCCTAT
Found at i:4224773 original size:31 final size:30
Alignment explanation
Indices: 4224732--4224789 Score: 89
Period size: 31 Copynumber: 1.9 Consensus size: 30
4224722 GTCAAAGGGT
4224732 CGGGTCAACGGTCGGGTCAAACCGGGTCAAA
1 CGGGTCAACGGTCGGGTCAAA-CGGGTCAAA
* *
4224763 CGGGTTAACGGTTGGGTCAAACGGGTC
1 CGGGTCAACGGTCGGGTCAAACGGGTC
4224790 GGGTCAAATC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 6 0.24
31 19 0.76
ACGTcount: A:0.22, C:0.22, G:0.38, T:0.17
Consensus pattern (30 bp):
CGGGTCAACGGTCGGGTCAAACGGGTCAAA
Found at i:4224804 original size:15 final size:14
Alignment explanation
Indices: 4224721--4224804 Score: 61
Period size: 12 Copynumber: 5.9 Consensus size: 14
4224711 AGCGGTCAAC
4224721 GGTCAAA-GGGTCG
1 GGTCAAACGGGTCG
4224734 GGTC-AAC-GGTCG
1 GGTCAAACGGGTCG
4224746 GGTCAAACCGGGTCAAACG
1 GGTCAAA-CGGGT----CG
* *
4224765 GGT-TAAC-GGTTG
1 GGTCAAACGGGTCG
4224777 GGTCAAACGGGTCG
1 GGTCAAACGGGTCG
4224791 GGTCAAATCGGGTC
1 GGTCAAA-CGGGTC
4224805 AACTTCCTCG
Statistics
Matches: 56, Mismatches: 4, Indels: 20
0.70 0.05 0.25
Matches are distributed among these distances:
12 15 0.27
13 9 0.16
14 12 0.21
15 9 0.16
16 3 0.05
17 1 0.02
18 2 0.04
19 5 0.09
ACGTcount: A:0.23, C:0.20, G:0.39, T:0.18
Consensus pattern (14 bp):
GGTCAAACGGGTCG
Found at i:4226876 original size:89 final size:89
Alignment explanation
Indices: 4226684--4226959 Score: 347
Period size: 89 Copynumber: 3.1 Consensus size: 89
4226674 CAGAACTATG
* * * *
4226684 TCCGTAGGGCTTATCCTAAGCACATAGCAA-AAAGGGATCCAACCTAAGGATATACCTTGGGACC
1 TCCGTAGGG-TTACCCTAAG--CATA-CAACAAATGGAACCAACCTAAGGATATACCTTGGGGCC
*
4226748 TATGGGCCTACCAAAGGATATCCTTAGA
62 TATGGGCCTACCCAAGGATATCCTTAGA
* * *
4226776 TCCATATGGTTACCCTAAGCATACAACAAATGGAACCAACCTAAGCATATACCTTGGGGCCTATG
1 TCCGTAGGGTTACCCTAAGCATACAACAAATGGAACCAACCTAAGGATATACCTTGGGGCCTATG
4226841 GGCCTACCCAAGGATATCCTTAGA
66 GGCCTACCCAAGGATATCCTTAGA
* * * * * * *
4226865 TCTGTAGGGTTACCTTAAGCACATAGCAAATGAAACCAACCTAAGGATATGCCTTGGGGCCTATG
1 TCCGTAGGGTTACCCTAAGCATACAACAAATGGAACCAACCTAAGGATATACCTTGGGGCCTATG
* * *
4226930 GGCATACCCAAGGGTATCCTTAGG
66 GGCCTACCCAAGGATATCCTTAGA
4226954 TCCGTA
1 TCCGTA
4226960 AGGTCTTACC
Statistics
Matches: 161, Mismatches: 22, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
88 3 0.02
89 142 0.88
91 9 0.06
92 7 0.04
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (89 bp):
TCCGTAGGGTTACCCTAAGCATACAACAAATGGAACCAACCTAAGGATATACCTTGGGGCCTATG
GGCCTACCCAAGGATATCCTTAGA
Found at i:4231642 original size:19 final size:19
Alignment explanation
Indices: 4231618--4231669 Score: 104
Period size: 19 Copynumber: 2.7 Consensus size: 19
4231608 AATAGCCTGA
4231618 GTGCATCGATGCATGGCTG
1 GTGCATCGATGCATGGCTG
4231637 GTGCATCGATGCATGGCTG
1 GTGCATCGATGCATGGCTG
4231656 GTGCATCGATGCAT
1 GTGCATCGATGCAT
4231670 CAAATGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.17, C:0.21, G:0.35, T:0.27
Consensus pattern (19 bp):
GTGCATCGATGCATGGCTG
Found at i:4231727 original size:84 final size:83
Alignment explanation
Indices: 4231573--4231735 Score: 249
Period size: 84 Copynumber: 2.0 Consensus size: 83
4231563 TGCACTAAGA
* *
4231573 GTGCATCGATGCATAAAATGCATTCGATGTTTCAAAATAGCCTGAGTGCATCGATGCATGGCTGG
1 GTGCATCGATGCATAAAATGCATTCGATGTTTCAAAATACCCTGAGGGCATCGATGCATGGCTGG
4231638 TGCATCGATGCATGGCTG
66 TGCATCGATGCATGGCTG
*
4231656 GTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAA-ACCCTGAGGGCATCGATGCATGG-T
1 GTGCATCGATGCATAAAATGCATTCGATG-TTTCA-AAATACCCTGAGGGCATCGATGCATGGCT
*
4231719 ATGTGCATCGATGCATG
64 -GGTGCATCGATGCATG
4231736 AAATGCATTC
Statistics
Matches: 73, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
83 29 0.40
84 41 0.56
85 3 0.04
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (83 bp):
GTGCATCGATGCATAAAATGCATTCGATGTTTCAAAATACCCTGAGGGCATCGATGCATGGCTGG
TGCATCGATGCATGGCTG
Found at i:4231790 original size:65 final size:63
Alignment explanation
Indices: 4231635--4231793 Score: 178
Period size: 65 Copynumber: 2.5 Consensus size: 63
4231625 GATGCATGGC
* *
4231635 TGGTGCATCGATGCATGGCTGGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAACCC
1 TGGTGCATCGATGCATGGTTGGTGCATCGATGCATCAAATGCATTCGATG-TTTCATAAAACCA
* * * **
4231699 TGAGGGCATCGATGCATGGTAT-GTGCATCGATGCATGAAATGCATTCGATG-TTCAATTTATTC
1 TG-GTGCATCGATGCATGGT-TGGTGCATCGATGCATCAAATGCATTCGATGTTTC-A-TAAAAC
4231762 CA
62 CA
*
4231764 TGGTGCATCGATGTATGGATTGGTGCATCG
1 TGGTGCATCGATGCATGG-TTGGTGCATCG
4231794 GTGTATCACT
Statistics
Matches: 80, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
63 3 0.04
64 18 0.22
65 58 0.73
66 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.31
Consensus pattern (63 bp):
TGGTGCATCGATGCATGGTTGGTGCATCGATGCATCAAATGCATTCGATGTTTCATAAAACCA
Found at i:4234387 original size:23 final size:22
Alignment explanation
Indices: 4234360--4234485 Score: 121
Period size: 23 Copynumber: 5.6 Consensus size: 22
4234350 GCATGGCCTT
4234360 GTGCATCGATGCACATTCAAGG
1 GTGCATCGATGCACATTCAAGG
* * *
4234382 AGTGCATCGGTGCACCTTC-ATG
1 -GTGCATCGATGCACATTCAAGG
*
4234404 GTGTATCGATGCACATTCAAGG
1 GTGCATCGATGCACATTCAAGG
* * *
4234426 AGTGCATCGGTGCACCTTC-ATG
1 -GTGCATCGATGCACATTCAAGG
*
4234448 GTGTATCGATGCACATTCAAGGG
1 GTGCATCGATGCACATTCAA-GG
*
4234471 GATGCATCAATGCAC
1 G-TGCATCGATGCAC
4234486 TGTTAGGTGT
Statistics
Matches: 81, Mismatches: 17, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
21 30 0.37
22 7 0.09
23 33 0.41
24 11 0.14
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (22 bp):
GTGCATCGATGCACATTCAAGG
Found at i:4234413 original size:44 final size:44
Alignment explanation
Indices: 4234364--4234504 Score: 214
Period size: 44 Copynumber: 3.2 Consensus size: 44
4234354 GGCCTTGTGC
4234364 ATCGATGCACATTCAAGGAGTGCATCGGTGCACCTTCATGGTGT
1 ATCGATGCACATTCAAGGAGTGCATCGGTGCACCTTCATGGTGT
4234408 ATCGATGCACATTCAAGGAGTGCATCGGTGCACCTTCATGGTGT
1 ATCGATGCACATTCAAGGAGTGCATCGGTGCACCTTCATGGTGT
* ** *
4234452 ATCGATGCACATTCAAGGGGATGCATCAATGCA-CTGTTA-GGTGT
1 ATCGATGCACATTCAAGGAG-TGCATCGGTGCACCT-TCATGGTGT
4234496 ATCGATGCA
1 ATCGATGCA
4234505 TTAAGCACAA
Statistics
Matches: 91, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
44 79 0.87
45 12 0.13
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (44 bp):
ATCGATGCACATTCAAGGAGTGCATCGGTGCACCTTCATGGTGT
Found at i:4240425 original size:65 final size:65
Alignment explanation
Indices: 4240292--4240451 Score: 218
Period size: 65 Copynumber: 2.5 Consensus size: 65
4240282 TGCACTAAGA
*
4240292 GTGCATCGATGCATAAAATGCATTCGATG-TTTCAAAATAGCCTGAGTGCATCGATGAATGGCTG
1 GTGCATCGATGCATAAAATGCATTCGATGTTTTCAAAATACCCTGAGTGCATCGATGAATGGCTG
* * * *
4240356 GTGCATCGATGCATCAAATGTATTAGATGTTTTCATAAA-ACCCTGAGTGCATCGATGCATGG-T
1 GTGCATCGATGCATAAAATGCATTCGATGTTTTCA-AAATACCCTGAGTGCATCGATGAATGGCT
*
4240419 AT
65 -G
*
4240421 GTGCATCGATGCATGAAATGCATTCGATGTT
1 GTGCATCGATGCATAAAATGCATTCGATGTT
4240452 CAATTTATTC
Statistics
Matches: 84, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
64 27 0.32
65 54 0.64
66 3 0.04
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.31
Consensus pattern (65 bp):
GTGCATCGATGCATAAAATGCATTCGATGTTTTCAAAATACCCTGAGTGCATCGATGAATGGCTG
Found at i:4240490 original size:65 final size:63
Alignment explanation
Indices: 4240292--4240496 Score: 211
Period size: 65 Copynumber: 3.2 Consensus size: 63
4240282 TGCACTAAGA
* * * *
4240292 GTGCATCGATGCATAAAATGCATTCGATGTTTCAAAATAGCCTGAGTGCATCGATGAATGGCTG
1 GTGCATCGATGCATAAAATGCATTCGATGTTTC-AATTAACCTGAGTGCATCGATGCATGGTTG
* * * *
4240356 GTGCATCGATGCATCAAATGTATTAGATGTTTTC-ATAAAACCCTGAGTGCATCGATGCATGGTA
1 GTGCATCGATGCATAAAATGCATTCGATG-TTTCAAT-TAA-CCTGAGTGCATCGATGCATGGT-
4240420 T-
62 TG
* *
4240421 GTGCATCGATGCATGAAATGCATTCGATG-TTCAATTTATTCCATG-GTGCATCGATGCATGGAT
1 GTGCATCGATGCATAAAATGCATTCGATGTTTCAA-TTA-ACC-TGAGTGCATCGATGCATGG-T
4240484 TG
62 TG
4240486 GTGCATCGATG
1 GTGCATCGATG
4240497 TATCACTTTG
Statistics
Matches: 118, Mismatches: 13, Indels: 19
0.79 0.09 0.13
Matches are distributed among these distances:
63 4 0.03
64 48 0.41
65 65 0.55
66 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.31
Consensus pattern (63 bp):
GTGCATCGATGCATAAAATGCATTCGATGTTTCAATTAACCTGAGTGCATCGATGCATGGTTG
Found at i:4245003 original size:24 final size:24
Alignment explanation
Indices: 4244952--4245003 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
4244942 AAAAAAGTAG
* *
4244952 TAAAAATATATAAAATAAAGAAAG
1 TAAAAATAAATAAAATAAAGAAAA
* *
4244976 TAAAAATAAATAAAATACATAAAA
1 TAAAAATAAATAAAATAAAGAAAA
4245000 TAAA
1 TAAA
4245004 GACGATGATG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.21
Consensus pattern (24 bp):
TAAAAATAAATAAAATAAAGAAAA
Found at i:4245199 original size:15 final size:15
Alignment explanation
Indices: 4245167--4245286 Score: 59
Period size: 15 Copynumber: 7.8 Consensus size: 15
4245157 AAATAATGAA
* *
4245167 AAAAATAAATTAAAAT
1 AAAAATAAAAT-ATAT
*
4245183 AAAAATAAGATATAT
1 AAAAATAAAATATAT
*
4245198 -AAAATAAAATGTAT
1 AAAAATAAAATATAT
*
4245212 ATAAATAATAATA-AT
1 AAAAATAA-AATATAT
* * *
4245227 AATAATAAAGACTAAAG
1 AAAAATAAA-A-TATAT
*
4245244 AATAATAAAATA-AT
1 AAAAATAAAATATAT
4245258 AAAATAATAAAATAATAT
1 -AAA-AATAAAAT-ATAT
*
4245276 AGAAA-AAAATA
1 AAAAATAAAATA
4245287 AAAATAAAAA
Statistics
Matches: 82, Mismatches: 13, Indels: 20
0.71 0.11 0.17
Matches are distributed among these distances:
14 15 0.18
15 27 0.33
16 25 0.30
17 13 0.16
18 2 0.02
ACGTcount: A:0.70, C:0.01, G:0.04, T:0.25
Consensus pattern (15 bp):
AAAAATAAAATATAT
Found at i:4245203 original size:14 final size:14
Alignment explanation
Indices: 4245184--4245295 Score: 61
Period size: 16 Copynumber: 7.6 Consensus size: 14
4245174 AATTAAAATA
*
4245184 AAAATAAGATATAT
1 AAAATAAAATATAT
*
4245198 AAAATAAAATGTAT
1 AAAATAAAATATAT
4245212 ATAAATAATAATA-AT
1 A-AAATAA-AATATAT
* *
4245227 AATAATAAAGACTAAAG
1 AA-AATAAA-A-TATAT
*
4245244 AATAATAAAATAATAA
1 AA-AATAAAAT-ATAT
4245260 AATAATAAAATAATAT
1 AA-AATAAAAT-ATAT
*
4245276 AGAA-AAAA-ATA-
1 AAAATAAAATATAT
4245287 AAAATAAAA
1 AAAATAAAA
4245296 ATAGTATAAT
Statistics
Matches: 81, Mismatches: 9, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
11 3 0.04
12 7 0.09
14 19 0.23
15 18 0.22
16 24 0.30
17 10 0.12
ACGTcount: A:0.71, C:0.01, G:0.04, T:0.24
Consensus pattern (14 bp):
AAAATAAAATATAT
Found at i:4245223 original size:3 final size:3
Alignment explanation
Indices: 4245215--4245274 Score: 56
Period size: 3 Copynumber: 20.3 Consensus size: 3
4245205 AATGTATATA
*
4245215 AAT AAT AAT AAT AAT AAT AA- AGACT AAAG AAT AAT AA- AAT AAT AA-
1 AAT AAT AAT AAT AAT AAT AAT A-A-T -AAT AAT AAT AAT AAT AAT AAT
4245260 AAT AAT AA- AAT AAT A
1 AAT AAT AAT AAT AAT A
4245275 TAGAAAAAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
2 7 0.15
3 39 0.81
5 1 0.02
6 1 0.02
ACGTcount: A:0.70, C:0.02, G:0.03, T:0.25
Consensus pattern (3 bp):
AAT
Found at i:4245225 original size:26 final size:25
Alignment explanation
Indices: 4245180--4245260 Score: 71
Period size: 26 Copynumber: 3.2 Consensus size: 25
4245170 AATAAATTAA
4245180 AATAAA-AAT-AAG-ATATATAAAAT
1 AATAAAGAATAAAGAATA-ATAAAAT
* *
4245203 AA-AATGTATATAAATAATAATAATAAT
1 AATAAAG-A-ATAAAGAATAATAA-AAT
*
4245230 AATAAAGACTAAAGAATAATAAAAT
1 AATAAAGAATAAAGAATAATAAAAT
4245255 AATAAA
1 AATAAA
4245261 ATAATAAAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
22 2 0.04
23 2 0.04
24 1 0.02
25 11 0.24
26 18 0.39
27 9 0.20
28 3 0.07
ACGTcount: A:0.68, C:0.01, G:0.05, T:0.26
Consensus pattern (25 bp):
AATAAAGAATAAAGAATAATAAAAT
Found at i:4245231 original size:16 final size:16
Alignment explanation
Indices: 4245156--4245274 Score: 73
Period size: 16 Copynumber: 7.1 Consensus size: 16
4245146 CCAATAATGC
*
4245156 AAAATAATGAAAAAAAT
1 AAAATAAT-AAAATAAT
* *
4245173 AAATTAA-AATAAAAAT
1 AAAATAATAA-AATAAT
*
4245189 AAGATATATAAAATAA-
1 AAAATA-ATAAAATAAT
**
4245205 AATGTATATAAATAATAAT
1 AAAATA-AT-AA-AATAAT
4245224 AATAATAATAAAGACTAA-
1 AA-AATAATAAA-A-TAAT
*
4245242 AGAATAATAAAATAAT
1 AAAATAATAAAATAAT
4245258 AAAATAATAAAATAAT
1 AAAATAATAAAATAAT
4245274 A
1 A
4245275 TAGAAAAAAA
Statistics
Matches: 82, Mismatches: 10, Indels: 21
0.73 0.09 0.19
Matches are distributed among these distances:
15 5 0.06
16 34 0.41
17 23 0.28
18 11 0.13
19 7 0.09
20 2 0.02
ACGTcount: A:0.70, C:0.01, G:0.04, T:0.25
Consensus pattern (16 bp):
AAAATAATAAAATAAT
Found at i:4245268 original size:26 final size:26
Alignment explanation
Indices: 4245212--4245260 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
4245202 TAAAATGTAT
*
4245212 ATAAATAATAATAATAATAATAAAGA
1 ATAAAGAATAATAATAATAATAAAGA
*
4245238 CTAAAGAATAATAA-AATAATAAA
1 ATAAAGAATAATAATAATAATAAA
4245261 ATAATAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 9 0.43
26 12 0.57
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.24
Consensus pattern (26 bp):
ATAAAGAATAATAATAATAATAAAGA
Found at i:4247020 original size:34 final size:35
Alignment explanation
Indices: 4246977--4247049 Score: 94
Period size: 35 Copynumber: 2.1 Consensus size: 35
4246967 GTGGCATATG
* *
4246977 CACATTGCTCAAACTGT-GTTTATGTAAACAAAAC
1 CACATTGCTCAAACTGTGGTTAATGTAAACAAAAA
* **
4247011 CACATTGCTCCATGTGTGGTTAATGTAAACAAAAA
1 CACATTGCTCAAACTGTGGTTAATGTAAACAAAAA
4247046 CACA
1 CACA
4247050 CTCCTCTGTG
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
34 14 0.42
35 19 0.58
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.27
Consensus pattern (35 bp):
CACATTGCTCAAACTGTGGTTAATGTAAACAAAAA
Found at i:4251817 original size:21 final size:18
Alignment explanation
Indices: 4251786--4251836 Score: 66
Period size: 21 Copynumber: 2.7 Consensus size: 18
4251776 ATTTCATAAA
*
4251786 TTTAATTATTTTTTTATTT
1 TTTAAATATTTTTTTA-TT
4251805 GTTTATAATATTTTTTTATT
1 -TTTA-AATATTTTTTTATT
4251825 TTTAAATATTTT
1 TTTAAATATTTT
4251837 AGATGGCATC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 8 0.28
19 4 0.14
20 6 0.21
21 11 0.38
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (18 bp):
TTTAAATATTTTTTTATT
Found at i:4257613 original size:34 final size:36
Alignment explanation
Indices: 4257570--4257656 Score: 106
Period size: 36 Copynumber: 2.5 Consensus size: 36
4257560 TAAAAGTTAG
* *
4257570 TTTCAAAGTTTGG-CAA-CCAACTTTGAAAAATGTT
1 TTTCAAAGTTTGGTAAATCCAACTTTGAAAAATATT
****
4257604 TTTCAAAGTTTGGTAAATGTTTCTTTGAAAAATATT
1 TTTCAAAGTTTGGTAAATCCAACTTTGAAAAATATT
4257640 TTTCAAAGTTTGGTAAA
1 TTTCAAAGTTTGGTAAA
4257657 ATTTGGTAGA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
34 13 0.29
35 2 0.04
36 30 0.67
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.41
Consensus pattern (36 bp):
TTTCAAAGTTTGGTAAATCCAACTTTGAAAAATATT
Found at i:4257615 original size:21 final size:21
Alignment explanation
Indices: 4257591--4257651 Score: 53
Period size: 21 Copynumber: 3.2 Consensus size: 21
4257581 GGCAACCAAC
4257591 TTTGAAAAATGTTTTTCAAAG
1 TTTGAAAAATGTTTTTCAAAG
**
4257612 TTTGGTAAATG--TTTC----
1 TTTGAAAAATGTTTTTCAAAG
*
4257627 TTTGAAAAATATTTTTCAAAG
1 TTTGAAAAATGTTTTTCAAAG
4257648 TTTG
1 TTTG
4257652 GTAAAATTTG
Statistics
Matches: 29, Mismatches: 5, Indels: 12
0.63 0.11 0.26
Matches are distributed among these distances:
15 8 0.28
17 4 0.14
19 4 0.14
21 13 0.45
ACGTcount: A:0.33, C:0.05, G:0.15, T:0.48
Consensus pattern (21 bp):
TTTGAAAAATGTTTTTCAAAG
Found at i:4266355 original size:38 final size:38
Alignment explanation
Indices: 4266286--4266362 Score: 104
Period size: 38 Copynumber: 2.0 Consensus size: 38
4266276 GAAAGTGATA
*
4266286 TTATATGTAGAAAATAAATATTGATACTTGTATATAATG
1 TTATAGGTAGAAAATAAATATTGATACTTGTATA-AATG
*
4266325 TTATAGGTAGAAAAT-AATATTGA-AGGTTGTATAAATG
1 TTATAGGTAGAAAATAAATATTGATA-CTTGTATAAATG
4266362 T
1 T
4266363 ACCGATACTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
37 6 0.17
38 15 0.43
39 14 0.40
ACGTcount: A:0.43, C:0.01, G:0.17, T:0.39
Consensus pattern (38 bp):
TTATAGGTAGAAAATAAATATTGATACTTGTATAAATG
Found at i:4267967 original size:12 final size:12
Alignment explanation
Indices: 4267937--4268004 Score: 55
Period size: 12 Copynumber: 5.7 Consensus size: 12
4267927 TATTGGAAAA
4267937 GAGGAAGAGGAG
1 GAGGAAGAGGAG
* * *
4267949 GAAGAGGAGGAA
1 GAGGAAGAGGAG
* * *
4267961 GAGGAGGAAGAT
1 GAGGAAGAGGAG
4267973 GAGGAAGAGGAG
1 GAGGAAGAGGAG
* *
4267985 AAGGAAGAGAAG
1 GAGGAAGAGGAG
*
4267997 GAAGAAGA
1 GAGGAAGA
4268005 AAAGGTAGTA
Statistics
Matches: 43, Mismatches: 13, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
12 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.50, T:0.01
Consensus pattern (12 bp):
GAGGAAGAGGAG
Found at i:4268001 original size:9 final size:9
Alignment explanation
Indices: 4267937--4267984 Score: 87
Period size: 9 Copynumber: 5.3 Consensus size: 9
4267927 TATTGGAAAA
4267937 GAGGAAGAG
1 GAGGAAGAG
4267946 GAGGAAGAG
1 GAGGAAGAG
4267955 GAGGAAGAG
1 GAGGAAGAG
*
4267964 GAGGAAGAT
1 GAGGAAGAG
4267973 GAGGAAGAG
1 GAGGAAGAG
4267982 GAG
1 GAG
4267985 AAGGAAGAGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 37 1.00
ACGTcount: A:0.44, C:0.00, G:0.54, T:0.02
Consensus pattern (9 bp):
GAGGAAGAG
Found at i:4268001 original size:21 final size:17
Alignment explanation
Indices: 4267931--4267984 Score: 81
Period size: 18 Copynumber: 3.1 Consensus size: 17
4267921 GAAGGTTATT
*
4267931 GGAAAAGAGGAAGAGGA
1 GGAAGAGAGGAAGAGGA
4267948 GGAAGAGGAGGAAGAGGA
1 GGAAGA-GAGGAAGAGGA
4267966 GGAAGATGAGGAAGAGGA
1 GGAAGA-GAGGAAGAGGA
4267984 G
1 G
4267985 AAGGAAGAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
17 5 0.15
18 29 0.85
ACGTcount: A:0.46, C:0.00, G:0.52, T:0.02
Consensus pattern (17 bp):
GGAAGAGAGGAAGAGGA
Found at i:4268009 original size:21 final size:21
Alignment explanation
Indices: 4267965--4268009 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
4267955 GAGGAAGAGG
* *
4267965 AGGAAGATGAGGAAGAGGAGA
1 AGGAAGATGAGGAAGAAGAAA
4267986 AGGAAGA-GAAGGAAGAAGAAA
1 AGGAAGATG-AGGAAGAAGAAA
4268007 AGG
1 AGG
4268010 TAGTAGGGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 20 0.95
ACGTcount: A:0.53, C:0.00, G:0.44, T:0.02
Consensus pattern (21 bp):
AGGAAGATGAGGAAGAAGAAA
Found at i:4272312 original size:200 final size:199
Alignment explanation
Indices: 4271642--4273198 Score: 1253
Period size: 200 Copynumber: 7.9 Consensus size: 199
4271632 ATAAGTAAAA
* * * * *
4271642 AGAAAGTATCGATACAATTATGAAAAGTATTGATTCTTAAAACTTTGAAACCGATTAACTTAAAG
1 AGAAAGTATCGATACAAGTATGAAAAGTATCGATTCTTAAAACTTCGAAACTGATT-ATTTAAAG
* * * * * * *
4271707 TAATAGGTAAATTTAAAATG-ATAGCTGTAAAAAGATACTAGTTT-ATGATAAAATATGTTAACA
65 TAATAGGTAAATTTACAATGTA-AGCGGTAAAAATATACCAGTTTAATGAAAAAATACGTAAACA
* * * * * * ** *
4271770 TAAAGTAGCGATACTTTTTTTATGTGTATCAATACTTTTTGTTCAGTATGCTTCGTAATCTTAAG
129 TAAAGTATCGATACTTTTTGTAAGTGTATCGATACTTTTTGTCCAGTATGCATCCCAATC--GAG
* * ***
4271835 TAAGTAAAA
192 -ATGCATGC
*
4271844 AGAAAGTATCGATACAAGTATGAAAAGTATCGATTCTTAAAACTTCGAAACTGATTAACTTAAAG
1 AGAAAGTATCGATACAAGTATGAAAAGTATCGATTCTTAAAACTTCGAAACTGATT-ATTTAAAG
* * * * * *
4271909 TAATAGGTCAATTTACAATGTTAGCGGTAAAAAGATACCAGTTT-ATGATAAAATACTTTAACAT
65 TAATAGGTAAATTTACAATGTAAGCGGTAAAAATATACCAGTTTAATGAAAAAATACGTAAACAT
** * * **
4271973 AAAGTATAAATACTTTTT-T-A-TGTATCGATACTTTTT-TCCAGTATGCTTTCCAAACTTAAGT
130 AAAGTATCGATACTTTTTGTAAGTGTATCGATACTTTTTGTCCAGTATGC-ATCCCAA-TCGAG-
* * ***
4272034 AAGTAAAA
192 ATGCATGC
* * * ** * * *
4272042 AGAAAGTATCAAAACAAATATGAAAAGTATCGATTCACAAAACTT-TAAAATCGATTATTTGAAG
1 AGAAAGTATCGATACAAGTATGAAAAGTATCGATTCTTAAAACTTCGAAACT-GATTATTT-AAA
* * * *
4272106 GTAATAGGTAACTTTACAATGTTAGCGGTAAAAATATACCAGTTTAATGACAAGATACGTAAACA
64 GTAATAGGTAAATTTACAATGTAAGCGGTAAAAATATACCAGTTTAATGAAAAAATACGTAAACA
* ** * *
4272171 TAAAGTATCGATCCTTTTTGTATTTGTGTCAATACTTTTTGTCCAGTATGCATCCCAATCGAGAT
129 TAAAGTATCGATACTTTTTGTAAGTGTATCGATACTTTTTGTCCAGTATGCATCCCAATCGAGAT
*
4272236 GCACGC
194 GCATGC
* * * *
4272242 ATAAAGTATCGATACAAGTATGAAAAGTATCGATTCTTAAAACATCAAAACTGATTATTTAATGG
1 AGAAAGTATCGATACAAGTATGAAAAGTATCGATTCTTAAAACTTCGAAACTGATTATTTAA-AG
* * * * *
4272307 TAATAGGTAAATTGACAATGTAAGCAGTAAAAATATATCAGTTTAATGAGAAAATACATAAACAT
65 TAATAGGTAAATTTACAATGTAAGCGGTAAAAATATACCAGTTTAATGAAAAAATACGTAAACAT
* * * * * *
4272372 AAAGTATCAATACTTTTTGTAAGAGTATCGATACTTTTTGTCTAATATGCATCCCAAACGAGGTG
130 AAAGTATCGATACTTTTTGTAAGTGTATCGATACTTTTTGTCCAGTATGCATCCCAATCGAGATG
* *
4272437 AACGC
195 CATGC
* * * * *
4272442 TGAAAGCATCGATACAAGTACGAGAAGTATCGATTCTTAAAACTTCGAAA-TCGATTAGTATAAA
1 AGAAAGTATCGATACAAGTATGAAAAGTATCGATTCTTAAAACTTCGAAACT-GATTA-TTTAAA
* * * * *
4272506 GTAATAGATAAATTTACAATGTCAGCAGTAAAAAAATACC-GATTTAATGAAAACAATACATAAA
64 GTAATAGGTAAATTTACAATGTAAGCGGTAAAAATATACCAG-TTTAATGAAAA-AATACGTAAA
* * * * * **** **
4272570 CATAAAGTATCAATACTTTTTGTCCAATATGCATCCCAAACGAGATG--CACGTA-G-A--AAAT
127 CATAAAGTATCGATACTTTTTGT--AA-GTGTAT-CGATACTTTTTGTCCA-GTATGCATCCCA-
* *
4272629 ATC--GATACATGT
186 ATCGAGATGCATGC
* * * *
4272641 ATGAGAAGTATCGATTC---T-T--AAA--A-C--TTC--GAAAC--C--AA-TTAGTA--TAAA
1 A-GA-AAGTATCGATACAAGTATGAAAAGTATCGATTCTTAAAACTTCGAAACTGATTATTTAAA
* * * * *
4272686 GTAATAGGTAAATTGACAATGAAAGTGGTAAAAATATATCAGTTTAATGAGAAAATACGTAAACA
64 GTAATAGGTAAATTTACAATGTAAGCGGTAAAAATATACCAGTTTAATGAAAAAATACGTAAACA
* * * *
4272751 TAAAGTATCTATAGTTTTTGTAA-TACTATCGATACTTTTTGTCCAGTATGCATCCCAAACGAGA
129 TAAAGTATCGATACTTTTTGTAAGT-GTATCGATACTTTTTGTCCAGTATGCATCCCAATCGAGA
*
4272815 TGCATGT
193 TGCATGC
* * * *
4272822 AGAAAGTATCAATACATA-TAT-AAGAAGTATCGATTCTTAAAACTTTGAAACCGATTAGTATAA
1 AGAAAGTATCGATACA-AGTATGAA-AAGTATCGATTCTTAAAACTTCGAAACTGATTA-TTTAA
* *
4272885 AGTAATAGGTAAATTTACAATGTAAGCGGTAAAAATATATCAGTTTAATGAAAAAATACGTATAC
63 AGTAATAGGTAAATTTACAATGTAAGCGGTAAAAATATACCAGTTTAATGAAAAAATACGTAAAC
* * * *
4272950 ATAAAGTATCGATAC-TTCTGTAAGAGTATCGATACTTTTTGTCTAGTATGCATCCCAAACGAGA
128 ATAAAGTATCGATACTTTTTGTAAGTGTATCGATACTTTTTGTCCAGTATGCATCCCAATCGAGA
4273014 TGCATGC
193 TGCATGC
* * * * *
4273021 AGAAAGTATTGATACATGTATGAGAAGTATCGATTCTTAAAACTTCGAAACCGATTAGTATAAAG
1 AGAAAGTATCGATACAAGTATGAAAAGTATCGATTCTTAAAACTTCGAAACTGATTA-TTTAAAG
* * * *
4273086 TAATAGGTAAATTTACAATGTAAGCGGTAGAAATATA-CTGATTTAATGACAAAATATGTAAA-A
65 TAATAGGTAAATTTACAATGTAAGCGGTAAAAATATACCAG-TTTAATGAAAAAATACGTAAACA
* * * *
4273149 GTAGAA-TATCGATACTTTTTGAAAGAGTATTGATACTTTTT-TCTAGTATG
129 -TA-AAGTATCGATACTTTTTGTAAGTGTATCGATACTTTTTGTCCAGTATG
4273199 AAAACACCAA
Statistics
Matches: 1115, Mismatches: 178, Indels: 127
0.79 0.13 0.09
Matches are distributed among these distances:
175 7 0.01
176 5 0.00
177 5 0.00
178 1 0.00
179 42 0.04
180 49 0.04
181 10 0.01
182 1 0.00
183 4 0.00
184 4 0.00
185 2 0.00
186 1 0.00
187 1 0.00
188 5 0.00
190 6 0.01
192 5 0.00
193 1 0.00
195 2 0.00
196 2 0.00
197 10 0.01
198 113 0.10
199 240 0.22
200 365 0.33
201 57 0.05
202 152 0.14
203 14 0.01
204 5 0.00
205 6 0.01
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (199 bp):
AGAAAGTATCGATACAAGTATGAAAAGTATCGATTCTTAAAACTTCGAAACTGATTATTTAAAGT
AATAGGTAAATTTACAATGTAAGCGGTAAAAATATACCAGTTTAATGAAAAAATACGTAAACATA
AAGTATCGATACTTTTTGTAAGTGTATCGATACTTTTTGTCCAGTATGCATCCCAATCGAGATGC
ATGC
Found at i:4272719 original size:180 final size:179
Alignment explanation
Indices: 4272395--4272771 Score: 515
Period size: 180 Copynumber: 2.1 Consensus size: 179
4272385 TTTTTGTAAG
* * * *
4272395 AGTATCGATACTTTTTGTCTAATATGCATCCCAAACGAGGTGAACGCTGAAAGCATCGATACAAG
1 AGTATCAATACTTTTTGTCCAATATGCATCCCAAACGAGATGAACGCTGAAAACATCGATACAAG
* * *
4272460 TACGAGAAGTATCGATTCTTAAAACTTCGAAATCGATTAGTATAAAGTAATAGATAAATTTACAA
66 TACGAGAAGTATCGATTCTTAAAACTTCGAAACCAATTAGTATAAAGTAATAGATAAATTGACAA
**
4272525 TGTCAGCAGTAAAAAAATACC-GATTTAATGAAAACAATACATAAACATAA
131 TGAAAGCAGTAAAAAAATACCAG-TTTAATGAAAA-AATACATAAACATAA
* * *
4272575 AGTATCAATACTTTTTGTCCAATATGCATCCCAAACGAGATGCACG-TAGAAAATATCGATACAT
1 AGTATCAATACTTTTTGTCCAATATGCATCCCAAACGAGATGAACGCT-GAAAACATCGATACAA
* *
4272639 GTATGAGAAGTATCGATTCTTAAAACTTCGAAACCAATTAGTATAAAGTAATAGGTAAATTGACA
65 GTACGAGAAGTATCGATTCTTAAAACTTCGAAACCAATTAGTATAAAGTAATAGATAAATTGACA
** * * * *
4272704 ATGAAAGTGGTAAAAATATATCAGTTTAATGAGAAAATACGTAAACATAA
130 ATGAAAGCAGTAAAAAAATACCAGTTTAATGAAAAAATACATAAACATAA
* *
4272754 AGTATCTATAGTTTTTGT
1 AGTATCAATACTTTTTGT
4272772 AATACTATCG
Statistics
Matches: 173, Mismatches: 22, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
179 31 0.18
180 141 0.82
181 1 0.01
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.29
Consensus pattern (179 bp):
AGTATCAATACTTTTTGTCCAATATGCATCCCAAACGAGATGAACGCTGAAAACATCGATACAAG
TACGAGAAGTATCGATTCTTAAAACTTCGAAACCAATTAGTATAAAGTAATAGATAAATTGACAA
TGAAAGCAGTAAAAAAATACCAGTTTAATGAAAAAATACATAAACATAA
Found at i:4272900 original size:380 final size:389
Alignment explanation
Indices: 4271844--4273198 Score: 1369
Period size: 380 Copynumber: 3.5 Consensus size: 389
4271834 GTAAGTAAAA
* * * *
4271844 AGAAAGTATCGATACAAGTATGAAAAGTATCGATTCTTAAAACTTCGAAACTGATTAACT-TAAA
1 AGAAAGTATCGATACATGTATGAGAAGTATCGATTCTTAAAACTTCGAAACCGATT-AGTATAAA
* * * * * * * *
4271908 GTAATAGGTCAATTTACAATGTTAGCGGTAAAAAGATACCAGTTT-ATGATAAAATACTTTAACA
65 GTAATAGGTAAATTGACAATGTAAGCGGTAAAAATATATCAGTTTAATGAGAAAATACGTAAACA
* * * * * *
4271972 TAAAGTATAAATACTTTTT-T-A-TGTATCGATACTTTTT-TCCAGTATGCTTTCCAAACTTAAG
130 TAAAGTATCAATACTTTTTGTAAGAGTATCGATACTTTTTGTCTAGTATGCATCCCAAAC--GAG
* *** * * * * ** ** *
4272033 TAAGTAA-AAAGAAAGTATCAAAACAAATATGAA-AAGTATCGATTCACAAAACTTTAAAATCGA
193 -ATG-AACGCTGAAAGCATCAATACAAGTA-CAAGAAGTATCGATTCTTAAAACTTCGAAACCGA
* * * * * * *
4272096 TTA-TTTGAAGGTAATAGGTAACTTTACAATGTTAGCGGTAAAAATATACCAGTTTAATGACAAG
255 TTAGTAT-AAAGTAATAGATAAATTTACAATGTAAGCAGTAAAAAAATACCAGTTTAATGA-AA-
* ** *
4272160 ATACGTAA-ACATAAAGTATCGATCCTTTTTGTATTTGTGTCAATACTTTTTGTCCAGTATGCAT
317 ATACG-AATACATAAAG-ATC-A---ATTAAG-A---GTATCAATACTTTTTGTCCAGTATGCAT
*
4272224 CCCAATCGAGATGCACGC
372 CCCAAACGAGATGCACGC
* * * * * * * *
4272242 ATAAAGTATCGATACAAGTATGAAAAGTATCGATTCTTAAAACATCAAAACTGATTA-TTTAATG
1 AGAAAGTATCGATACATGTATGAGAAGTATCGATTCTTAAAACTTCGAAACCGATTAGTATAA-A
* *
4272306 GTAATAGGTAAATTGACAATGTAAGCAGTAAAAATATATCAGTTTAATGAGAAAATACATAAACA
65 GTAATAGGTAAATTGACAATGTAAGCGGTAAAAATATATCAGTTTAATGAGAAAATACGTAAACA
* *
4272371 TAAAGTATCAATACTTTTTGTAAGAGTATCGATACTTTTTGTCTAATATGCATCCCAAACGAGGT
130 TAAAGTATCAATACTTTTTGTAAGAGTATCGATACTTTTTGTCTAGTATGCATCCCAAACGAGAT
* * *
4272436 GAACGCTGAAAGCATCGATACAAGTACGAGAAGTATCGATTCTTAAAACTTCGAAATCGATTAGT
195 GAACGCTGAAAGCATCAATACAAGTACAAGAAGTATCGATTCTTAAAACTTCGAAACCGATTAGT
*
4272501 ATAAAGTAATAGATAAATTTACAATGTCAGCAGTAAAAAAATACC-GATTTAATG-AAA-AC-AA
260 ATAAAGTAATAGATAAATTTACAATGTAAGCAGTAAAAAAATACCAG-TTTAATGAAAATACGAA
*
4272562 TACAT-AA-A-C-A-TAA-AGTATCAATACTTTTTGTCCAATATGCATCCCAAACGAGATGCACG
324 TACATAAAGATCAATTAAGAGTATCAATACTTTTTGTCCAGTATGCATCCCAAACGAGATGCACG
*
4272621 T
389 C
* *
4272622 AGAAAATATCGATACATGTATGAGAAGTATCGATTCTTAAAACTTCGAAACCAATTAGTATAAAG
1 AGAAAGTATCGATACATGTATGAGAAGTATCGATTCTTAAAACTTCGAAACCGATTAGTATAAAG
* *
4272687 TAATAGGTAAATTGACAATGAAAGTGGTAAAAATATATCAGTTTAATGAGAAAATACGTAAACAT
66 TAATAGGTAAATTGACAATGTAAGCGGTAAAAATATATCAGTTTAATGAGAAAATACGTAAACAT
* * * * *
4272752 AAAGTATCTATAGTTTTTGTAATACTATCGATACTTTTTGTCCAGTATGCATCCCAAACGAGATG
131 AAAGTATCAATACTTTTTGTAAGAGTATCGATACTTTTTGTCTAGTATGCATCCCAAACGAGATG
* * * * *
4272817 CATG-TAGAAAGTATCAATACATA-TATAAGAAGTATCGATTCTTAAAACTTTGAAACCGATTAG
196 AACGCT-GAAAGCATCAATACA-AGTACAAGAAGTATCGATTCTTAAAACTTCGAAACCGATTAG
* * * *
4272880 TATAAAGTAATAGGTAAATTTACAATGTAAGCGGTAAAAATATATCAGTTTAATGAAAAAATACG
259 TATAAAGTAATAGATAAATTTACAATGTAAGCAGTAAAAAAATACCAGTTTAATG--AAAATACG
* * *
4272945 TATACATAAAGTATCGATACTTCTGTAAGAGTATCGATACTTTTTGTCTAGTATGCATCCCAAAC
322 AATACATAAAG-ATC-A-A----T-TAAGAGTATCAATACTTTTTGTCCAGTATGCATCCCAAAC
*
4273010 GAGATGCATGC
379 GAGATGCACGC
*
4273021 AGAAAGTATTGATACATGTATGAGAAGTATCGATTCTTAAAACTTCGAAACCGATTAGTATAAAG
1 AGAAAGTATCGATACATGTATGAGAAGTATCGATTCTTAAAACTTCGAAACCGATTAGTATAAAG
* * * * *
4273086 TAATAGGTAAATTTACAATGTAAGCGGTAGAAATATA-CTGATTTAATGACAAAATATGTAAA-A
66 TAATAGGTAAATTGACAATGTAAGCGGTAAAAATATATCAG-TTTAATGAGAAAATACGTAAACA
* * *
4273149 GTAGAA-TATCGATACTTTTTGAAAGAGTATTGATACTTTTT-TCTAGTATG
130 -TA-AAGTATCAATACTTTTTGTAAGAGTATCGATACTTTTTGTCTAGTATG
4273199 AAAACACCAA
Statistics
Matches: 813, Mismatches: 106, Indels: 76
0.82 0.11 0.08
Matches are distributed among these distances:
379 1 0.00
380 310 0.38
381 6 0.01
383 4 0.00
384 2 0.00
385 7 0.01
386 2 0.00
388 1 0.00
389 1 0.00
391 1 0.00
392 2 0.00
394 4 0.00
395 4 0.00
396 3 0.00
397 5 0.01
398 108 0.13
399 225 0.28
400 92 0.11
401 5 0.01
402 15 0.02
403 15 0.02
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.31
Consensus pattern (389 bp):
AGAAAGTATCGATACATGTATGAGAAGTATCGATTCTTAAAACTTCGAAACCGATTAGTATAAAG
TAATAGGTAAATTGACAATGTAAGCGGTAAAAATATATCAGTTTAATGAGAAAATACGTAAACAT
AAAGTATCAATACTTTTTGTAAGAGTATCGATACTTTTTGTCTAGTATGCATCCCAAACGAGATG
AACGCTGAAAGCATCAATACAAGTACAAGAAGTATCGATTCTTAAAACTTCGAAACCGATTAGTA
TAAAGTAATAGATAAATTTACAATGTAAGCAGTAAAAAAATACCAGTTTAATGAAAATACGAATA
CATAAAGATCAATTAAGAGTATCAATACTTTTTGTCCAGTATGCATCCCAAACGAGATGCACGC
Done.