Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008724.1 Hibiscus syriacus cultivar Beakdansim tig00111783_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5289199
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 22 of 23
Found at i:5009418 original size:21 final size:21
Alignment explanation
Indices: 5009394--5009450 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
5009384 GACTTGATAG
*
5009394 TATCGATACTATTGTTCACGA
1 TATCGATACTACTGTTCACGA
* * * *
5009415 TATCAATACTACTGTTTATGG
1 TATCGATACTACTGTTCACGA
5009436 TATCGATACTACTGT
1 TATCGATACTACTGT
5009451 AGCAGTATCG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (21 bp):
TATCGATACTACTGTTCACGA
Found at i:5024610 original size:47 final size:47
Alignment explanation
Indices: 5024541--5024637 Score: 194
Period size: 47 Copynumber: 2.1 Consensus size: 47
5024531 AAACATTTGT
5024541 AAATATTTTATAACCATACCTCAAACACAAAACAACTTAATAAGCAA
1 AAATATTTTATAACCATACCTCAAACACAAAACAACTTAATAAGCAA
5024588 AAATATTTTATAACCATACCTCAAACACAAAACAACTTAATAAGCAA
1 AAATATTTTATAACCATACCTCAAACACAAAACAACTTAATAAGCAA
5024635 AAA
1 AAA
5024638 CACCAAGTAG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 50 1.00
ACGTcount: A:0.55, C:0.21, G:0.02, T:0.23
Consensus pattern (47 bp):
AAATATTTTATAACCATACCTCAAACACAAAACAACTTAATAAGCAA
Found at i:5024671 original size:20 final size:21
Alignment explanation
Indices: 5024630--5024671 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
5024620 CAACTTAATA
5024630 AGCAAAAACACCAAGTAGCAT
1 AGCAAAAACACCAAGTAGCAT
5024651 AGCAAAAACACCAAGTA-CAT
1 AGCAAAAACACCAAGTAGCAT
5024671 A
1 A
5024672 CACTACAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.55, C:0.24, G:0.12, T:0.10
Consensus pattern (21 bp):
AGCAAAAACACCAAGTAGCAT
Found at i:5026743 original size:108 final size:106
Alignment explanation
Indices: 5026473--5026847 Score: 502
Period size: 106 Copynumber: 3.5 Consensus size: 106
5026463 AATATTTTAT
* * *
5026473 TTTGGAATTTGAGCAATGCTAGTAGTATCGATACTACCTTGTGAGTATCGATACTTCCACTACCT
1 TTTGGAATTTGAGCAATTCTGGTAGTATCGATACTACCTTGTGAGTATCGATACTTCCATTACCT
* ** * * * * *
5026538 TTGGTATCGGTACCCCTTT-GGTACCAGAATCATTTTTTCA
66 TTGGTATCGATATTCCTTTGGGTATCGGTACCATTTTTGCA
5026578 TTTTGGAATTTGAGCAATGT-TGGTAGTATCGATACTACCTTGTGAGTATCGATACTTCCATTAC
1 -TTTGGAATTTGAGCAAT-TCTGGTAGTATCGATACTACCTTGTGAGTATCGATACTTCCATTAC
* * *
5026642 CTTTGGTATCAATATTTCTTTGGGTTATTGGTACCATTTTTGCA
64 CTTTGGTATCGATATTCCTTTGGG-TATCGGTACCATTTTTGCA
* * ** *
5026686 TTATGGAATTTGAACAATTCTGGTAGTATCGATACGAAGTTGTGAGAATCGATACTTCCATTACC
1 TT-TGGAATTTGAGCAATTCTGGTAGTATCGATACTACCTTGTGAGTATCGATACTTCCATTACC
5026751 TTTGGTATCGATATTCCTTTGGGTATCGGTACCATTTTTGCA
65 TTTGGTATCGATATTCCTTTGGGTATCGGTACCATTTTTGCA
* * *
5026793 TTTGGAATTTGAGTAATTATGGTAGTATCGATACTACCTTTTGAGTATCGATACT
1 TTTGGAATTTGAGCAATTCTGGTAGTATCGATACTACCTTGTGAGTATCGATACT
5026848 ACCTTGTGAG
Statistics
Matches: 234, Mismatches: 30, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
106 120 0.51
107 25 0.11
108 89 0.38
ACGTcount: A:0.24, C:0.16, G:0.19, T:0.40
Consensus pattern (106 bp):
TTTGGAATTTGAGCAATTCTGGTAGTATCGATACTACCTTGTGAGTATCGATACTTCCATTACCT
TTGGTATCGATATTCCTTTGGGTATCGGTACCATTTTTGCA
Found at i:5026841 original size:20 final size:20
Alignment explanation
Indices: 5026816--5026866 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
5026806 TAATTATGGT
*
5026816 AGTATCGATACTACCTTTTG
1 AGTATCGATACTACCTTGTG
5026836 AGTATCGATACTACCTTGTG
1 AGTATCGATACTACCTTGTG
5026856 AGTATCGATAC
1 AGTATCGATAC
5026867 CATATGAACA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (20 bp):
AGTATCGATACTACCTTGTG
Found at i:5027878 original size:64 final size:64
Alignment explanation
Indices: 5027808--5027953 Score: 163
Period size: 65 Copynumber: 2.3 Consensus size: 64
5027798 ATGCACCAAT
*
5027808 CCATGCATTGATGCAC-CATGAATCAAATTG-AACATCGAATGCATTTCATGCATCGATGCACAT
1 CCATGCATCGATGCACTCA-GAATCAAA-TGAAACATCGAATGCATTTCATGCATCGATGCACAT
5027871 A
64 A
* *** *
5027872 CCATGCATCGATGCACTGAGAATTTTATGAAAACATCGAATGCATTTGATGCATCGATGCACCA-
1 CCATGCATCGATGCACTCAGAATCAAATG-AAACATCGAATGCATTTCATGCATCGATGCA-CAT
*
5027936 G
64 A
*
5027937 CCTTGCATCGATGCACT
1 CCATGCATCGATGCACT
5027954 ATGGCTATTT
Statistics
Matches: 70, Mismatches: 8, Indels: 7
0.82 0.09 0.08
Matches are distributed among these distances:
63 2 0.03
64 20 0.29
65 46 0.66
66 2 0.03
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.27
Consensus pattern (64 bp):
CCATGCATCGATGCACTCAGAATCAAATGAAACATCGAATGCATTTCATGCATCGATGCACATA
Found at i:5027968 original size:65 final size:65
Alignment explanation
Indices: 5027838--5027997 Score: 193
Period size: 65 Copynumber: 2.5 Consensus size: 65
5027828 AATCAAATTG
*
5027838 AACATCGAATGCATTTCATGCATCGATGCA-CATACCATGCATCGATGCACTGAGAATTTTATGA
1 AACATCGAATGCATTTGATGCATCGATGCACCATACCATGCATCGATGCACTGAGAATTTTATG-
5027902 A
65 A
* * **
5027903 AACATCGAATGCATTTGATGCATCGATGCACCA-GCCTTGCATCGATGCACT-ATGGCTATTT-T
1 AACATCGAATGCATTTGATGCATCGATGCACCATACCATGCATCGATGCACTGA-GAAT-TTTAT
5027965 GA
64 GA
* * *
5027967 AACATCGAATGCACTTGATGAATCGTTGCAC
1 AACATCGAATGCATTTGATGCATCGATGCAC
5027998 TCTTAGTGCA
Statistics
Matches: 84, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
64 30 0.36
65 49 0.58
66 5 0.06
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.28
Consensus pattern (65 bp):
AACATCGAATGCATTTGATGCATCGATGCACCATACCATGCATCGATGCACTGAGAATTTTATGA
Found at i:5033890 original size:23 final size:22
Alignment explanation
Indices: 5033813--5033891 Score: 88
Period size: 23 Copynumber: 3.6 Consensus size: 22
5033803 ACACCTAACA
5033813 GTGCATCGATGCATCCTTGAAT
1 GTGCATCGATGCATCCTTGAAT
* * * *
5033835 GTGGATCGATACA-CCATGAAG
1 GTGCATCGATGCATCCTTGAAT
* *
5033856 GTGCACCAATGCATGCCTTGAAT
1 GTGCATCGATGCAT-CCTTGAAT
5033879 GTGCATCGATGCA
1 GTGCATCGATGCA
5033892 CAATGCCATG
Statistics
Matches: 43, Mismatches: 12, Indels: 3
0.74 0.21 0.05
Matches are distributed among these distances:
21 15 0.35
22 11 0.26
23 17 0.40
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (22 bp):
GTGCATCGATGCATCCTTGAAT
Found at i:5033911 original size:43 final size:42
Alignment explanation
Indices: 5033812--5033914 Score: 118
Period size: 43 Copynumber: 2.4 Consensus size: 42
5033802 TACACCTAAC
* *
5033812 AGTGCATCGATGCATCCTTGAATGTGGATCGATACACCATGA
1 AGTGCATCGATGCATCCTTGAATGTGCATCGATACACAATGA
* * * *
5033854 AGGTGCACCAATGCATGCCTTGAATGTGCATCGATGCACAATGCC
1 A-GTGCATCGATGCAT-CCTTGAATGTGCATCGATACACAATG-A
5033899 A-TGCATCGATGCATCC
1 AGTGCATCGATGCATCC
5033915 GTCGGGTTTT
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
42 3 0.06
43 23 0.46
44 23 0.46
45 1 0.02
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.24
Consensus pattern (42 bp):
AGTGCATCGATGCATCCTTGAATGTGCATCGATACACAATGA
Found at i:5035492 original size:21 final size:21
Alignment explanation
Indices: 5035450--5035493 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
5035440 ACTCCGGGAG
*
5035450 CTAGCTCTTCATGAGCTTCTC
1 CTAGCTCTTCATGAGCTCCTC
*
5035471 CTAGCTCTTC-TCGTGCTCCTC
1 CTAGCTCTTCAT-GAGCTCCTC
5035492 CT
1 CT
5035494 CCTCCTCTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 19 0.95
ACGTcount: A:0.09, C:0.39, G:0.14, T:0.39
Consensus pattern (21 bp):
CTAGCTCTTCATGAGCTCCTC
Found at i:5036686 original size:19 final size:19
Alignment explanation
Indices: 5036637--5036688 Score: 95
Period size: 19 Copynumber: 2.7 Consensus size: 19
5036627 GAATGCATTT
*
5036637 CATGCATCGATACAAATAC
1 CATGCATCGATGCAAATAC
5036656 CATGCATCGATGCAAATAC
1 CATGCATCGATGCAAATAC
5036675 CATGCATCGATGCA
1 CATGCATCGATGCA
5036689 CTGAGGATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.37, C:0.27, G:0.15, T:0.21
Consensus pattern (19 bp):
CATGCATCGATGCAAATAC
Found at i:5036796 original size:64 final size:66
Alignment explanation
Indices: 5036657--5036799 Score: 186
Period size: 65 Copynumber: 2.2 Consensus size: 66
5036647 TACAAATACC
* *
5036657 ATGCATCGATGCA-AATACCATGCATCGATGCACTGAGGATTTTATGAAAACATCGAATGCATTT
1 ATGCATCGATGCACAATACCATGCATCGATGCACTCAGGATTTTATGAAAACATCGAATGCACTT
5036721 G
66 G
* * * * *
5036722 ATGCACCGATGCACCAT-CCATGCATCGATGTACTCTGGCTATTT-TG-AAACATCGAATGCACT
1 ATGCATCGATGCACAATACCATGCATCGATGCACTCAGGAT-TTTATGAAAACATCGAATGCACT
5036784 TG
65 TG
5036786 ATGCATCGATGCAC
1 ATGCATCGATGCAC
5036800 TCTTAGTGCA
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
64 30 0.44
65 33 0.49
66 5 0.07
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (66 bp):
ATGCATCGATGCACAATACCATGCATCGATGCACTCAGGATTTTATGAAAACATCGAATGCACTT
G
Found at i:5040954 original size:2 final size:2
Alignment explanation
Indices: 5040949--5040973 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
5040939 AAAAAAGTGT
5040949 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
5040974 TAATATTGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:5041037 original size:10 final size:10
Alignment explanation
Indices: 5041022--5041100 Score: 113
Period size: 10 Copynumber: 7.7 Consensus size: 10
5041012 TTATTTTATA
5041022 TTGAACCCGG
1 TTGAACCCGG
5041032 TTGAACCGCGG
1 TTGAACC-CGG
5041043 TTGAACCCGG
1 TTGAACCCGG
*
5041053 TTGAACCGCAG
1 TTGAACC-CGG
*
5041064 TTGAACCCAG
1 TTGAACCCGG
5041074 TTGAACCCGG
1 TTGAACCCGG
*
5041084 TTGAACCCGA
1 TTGAACCCGG
5041094 TTGAACC
1 TTGAACC
5041101 AGTGAACCAG
Statistics
Matches: 64, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
10 45 0.70
11 19 0.30
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (10 bp):
TTGAACCCGG
Found at i:5041048 original size:21 final size:21
Alignment explanation
Indices: 5041022--5041100 Score: 124
Period size: 21 Copynumber: 3.8 Consensus size: 21
5041012 TTATTTTATA
5041022 TTGAACCCGGTTGAACCGCGG
1 TTGAACCCGGTTGAACCGCGG
*
5041043 TTGAACCCGGTTGAACCGCAG
1 TTGAACCCGGTTGAACCGCGG
*
5041064 TTGAACCCAGTTGAACC-CGG
1 TTGAACCCGGTTGAACCGCGG
*
5041084 TTGAACCCGATTGAACC
1 TTGAACCCGGTTGAACC
5041101 AGTGAACCAG
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
20 17 0.32
21 36 0.68
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (21 bp):
TTGAACCCGGTTGAACCGCGG
Found at i:5041077 original size:31 final size:30
Alignment explanation
Indices: 5041022--5041100 Score: 106
Period size: 31 Copynumber: 2.6 Consensus size: 30
5041012 TTATTTTATA
*
5041022 TTGAACCCGGTTGAACCGCGGTTGAACCCGG
1 TTGAACCCAGTTGAACC-CGGTTGAACCCGG
*
5041053 TTGAACCGCAGTTGAACCCAGTTGAACCCGG
1 TTGAACC-CAGTTGAACCCGGTTGAACCCGG
5041084 TTGAACCC-GATTGAACC
1 TTGAACCCAG-TTGAACC
5041101 AGTGAACCAG
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
29 1 0.02
30 8 0.18
31 26 0.59
32 9 0.20
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (30 bp):
TTGAACCCAGTTGAACCCGGTTGAACCCGG
Found at i:5044318 original size:12 final size:12
Alignment explanation
Indices: 5044301--5044346 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
5044291 GGTAGTGGAA
5044301 AAAGGTGATGCT
1 AAAGGTGATGCT
* * *
5044313 AAAGGTTATACA
1 AAAGGTGATGCT
*
5044325 AAAGGTGATTCT
1 AAAGGTGATGCT
5044337 AAAGGTGATG
1 AAAGGTGATG
5044347 ATCAATGTGA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.28, T:0.26
Consensus pattern (12 bp):
AAAGGTGATGCT
Found at i:5044515 original size:33 final size:33
Alignment explanation
Indices: 5044452--5044516 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
5044442 GTGCTTTTAT
* **
5044452 TTTTTCTTCTTGTGATTGCTTCCATGTCTTGTA
1 TTTTTCTTCTTGTGATGGCTTCCACATCTTGTA
*
5044485 TTTTTCTTCTTGTGGTGGCTTCCACATCTTGT
1 TTTTTCTTCTTGTGATGGCTTCCACATCTTGT
5044517 TCTTTTATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.08, C:0.20, G:0.17, T:0.55
Consensus pattern (33 bp):
TTTTTCTTCTTGTGATGGCTTCCACATCTTGTA
Found at i:5046551 original size:31 final size:31
Alignment explanation
Indices: 5046516--5046698 Score: 129
Period size: 31 Copynumber: 5.8 Consensus size: 31
5046506 GTATTTCGGG
5046516 ACATATGGACAGTATACCTATGTTCTACAGA
1 ACATATGGACAGTATACCTATGTTCTACAGA
** * *
5046547 ACATATGGACAAAATTACCTATG-TCTTTCAGG
1 ACATATGGACAGTA-TACCTATGTTC-TACAGA
* * * * *
5046579 GCATATGGACAGTATACTTATATTATACGGA
1 ACATATGGACAGTATACCTATGTTCTACAGA
* * ** * * *
5046610 ACATATAGAAAAAATTACCTAT-TTCTTTCGGG
1 ACATATGGACAGTA-TACCTATGTTC-TACAGA
*
5046642 ATATATGGACAGTATACCTATGTTCTA-AGGA
1 ACATATGGACAGTATACCTATGTTCTACA-GA
* *
5046673 ACATATGGACAGTTTACCTAGGTTCT
1 ACATATGGACAGTATACCTATGTTCT
5046699 TCGGGACCTA
Statistics
Matches: 112, Mismatches: 33, Indels: 14
0.70 0.21 0.09
Matches are distributed among these distances:
31 66 0.59
32 46 0.41
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.32
Consensus pattern (31 bp):
ACATATGGACAGTATACCTATGTTCTACAGA
Found at i:5046584 original size:32 final size:31
Alignment explanation
Indices: 5046496--5046589 Score: 84
Period size: 32 Copynumber: 3.0 Consensus size: 31
5046486 AAGAGTGAAG
* *
5046496 AATTACATATGTATTTC-GGGACATATGGACAG
1 AATTACCTATGT-TTTCAGGG-CATATGGACAA
* * **
5046528 TA-TACCTATGTTCTACAGAACATATGGACAA
1 AATTACCTATGTT-TTCAGGGCATATGGACAA
5046559 AATTACCTATGTCTTTCAGGGCATATGGACA
1 AATTACCTATGT-TTTCAGGGCATATGGACA
5046590 GTATACTTAT
Statistics
Matches: 48, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
30 1 0.02
31 21 0.44
32 25 0.52
33 1 0.02
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (31 bp):
AATTACCTATGTTTTCAGGGCATATGGACAA
Found at i:5046584 original size:63 final size:63
Alignment explanation
Indices: 5046496--5046715 Score: 259
Period size: 63 Copynumber: 3.5 Consensus size: 63
5046486 AAGAGTGAAG
* *
5046496 AATTACATATGTATTTCGGGACATATGGACAGTATACCTATGTTCTACAGAACATATGGACAA
1 AATTACCTATGTCTTTCGGGACATATGGACAGTATACCTATGTTCTACAGAACATATGGACAA
* * * * * *
5046559 AATTACCTATGTCTTTCAGGG-CATATGGACAGTATACTTATATTATACGGAACATATAGAAAA
1 AATTACCTATGTCTTTC-GGGACATATGGACAGTATACCTATGTTCTACAGAACATATGGACAA
* *
5046622 AATTACCTATTTCTTTCGGGATATATGGACAGTATACCTATGTTCTA-AGGAACATATGGAC-A
1 AATTACCTATGTCTTTCGGGACATATGGACAGTATACCTATGTTCTACA-GAACATATGGACAA
** * *
5046684 GTTTACCTAGGT-TCTTCGGGACCTATGGACAG
1 AATTACCTATGTCT-TTCGGGACATATGGACAG
5046716 ATGTCGAGGT
Statistics
Matches: 131, Mismatches: 22, Indels: 9
0.81 0.14 0.06
Matches are distributed among these distances:
61 1 0.01
62 28 0.21
63 99 0.76
64 3 0.02
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (63 bp):
AATTACCTATGTCTTTCGGGACATATGGACAGTATACCTATGTTCTACAGAACATATGGACAA
Found at i:5046711 original size:31 final size:31
Alignment explanation
Indices: 5046510--5046715 Score: 121
Period size: 31 Copynumber: 6.6 Consensus size: 31
5046500 ACATATGTAT
*
5046510 TTCGGGACATATGGACAGTATACCTATGTTC
1 TTCGGGACATATGGACAGTATACCTAGGTTC
* * * ** *
5046541 TACAGAACATATGGACAAAATTACCTATG-TC
1 TTCGGGACATATGGACAGTA-TACCTAGGTTC
* ** *
5046572 TTTCAGGG-CATATGGACAGTATACTTATATTA
1 -TTC-GGGACATATGGACAGTATACCTAGGTTC
* * * * ** *
5046604 TACGGAACATATAGAAAAAATTACCTA-TTTC
1 TTCGGGACATATGGACAGTA-TACCTAGGTTC
* *
5046635 TTTCGGGATATATGGACAGTATACCTATGTTC
1 -TTCGGGACATATGGACAGTATACCTAGGTTC
** * *
5046667 TAAGGAACATATGGACAGTTTACCTAGGTTC
1 TTCGGGACATATGGACAGTATACCTAGGTTC
*
5046698 TTCGGGACCTATGGACAG
1 TTCGGGACATATGGACAG
5046716 ATGTCGAGGT
Statistics
Matches: 127, Mismatches: 40, Indels: 16
0.69 0.22 0.09
Matches are distributed among these distances:
30 2 0.02
31 81 0.64
32 43 0.34
33 1 0.01
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (31 bp):
TTCGGGACATATGGACAGTATACCTAGGTTC
Found at i:5056781 original size:21 final size:21
Alignment explanation
Indices: 5056757--5056800 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
5056747 TGCCGAAGTT
5056757 ACTGTAGCAGTGCATCGATAC
1 ACTGTAGCAGTGCATCGATAC
5056778 ACTGTAGCAGTGCATCGATAC
1 ACTGTAGCAGTGCATCGATAC
5056799 AC
1 AC
5056801 AATTGATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.23
Consensus pattern (21 bp):
ACTGTAGCAGTGCATCGATAC
Found at i:5066005 original size:12 final size:13
Alignment explanation
Indices: 5065978--5066010 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
5065968 ACATTATAAT
*
5065978 TTTTCAAACTTAG
1 TTTTCAAACATAG
5065991 TTTTCAAA-ATAG
1 TTTTCAAACATAG
5066003 TTTTCAAA
1 TTTTCAAA
5066011 TTTTGCCCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.36, C:0.12, G:0.06, T:0.45
Consensus pattern (13 bp):
TTTTCAAACATAG
Found at i:5073833 original size:43 final size:44
Alignment explanation
Indices: 5073770--5073865 Score: 149
Period size: 43 Copynumber: 2.2 Consensus size: 44
5073760 TTTTTACGCG
* *
5073770 TAAATAAAAAGTGAATAATTATTTAAAAATTATTTTAAAATTAA
1 TAAATAAAAAGTAAACAATTATTTAAAAATTATTTTAAAATTAA
*
5073814 TAAATAAAAA-TAAACAATTATTTTAAAATTATTTTAAAATTAA
1 TAAATAAAAAGTAAACAATTATTTAAAAATTATTTTAAAATTAA
*
5073857 TGAATAAAA
1 TAAATAAAA
5073866 TTTACTAAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
43 38 0.79
44 10 0.21
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.38
Consensus pattern (44 bp):
TAAATAAAAAGTAAACAATTATTTAAAAATTATTTTAAAATTAA
Found at i:5074461 original size:11 final size:11
Alignment explanation
Indices: 5074445--5074514 Score: 62
Period size: 11 Copynumber: 6.6 Consensus size: 11
5074435 AAAATTACAT
5074445 TATTAAAAATA
1 TATTAAAAATA
5074456 TATTAAAAATA
1 TATTAAAAATA
*
5074467 CGTATT---GATA
1 --TATTAAAAATA
5074477 T-TTATAAAAT-
1 TATTA-AAAATA
5074487 T-TTAAAAATA
1 TATTAAAAATA
5074497 TATTAAAAATA
1 TATTAAAAATA
5074508 TATTAAA
1 TATTAAA
5074515 TTTTAAAATA
Statistics
Matches: 49, Mismatches: 2, Indels: 16
0.73 0.03 0.24
Matches are distributed among these distances:
7 2 0.04
8 1 0.02
9 5 0.10
10 8 0.16
11 29 0.59
13 4 0.08
ACGTcount: A:0.56, C:0.01, G:0.03, T:0.40
Consensus pattern (11 bp):
TATTAAAAATA
Found at i:5075059 original size:34 final size:34
Alignment explanation
Indices: 5074981--5075059 Score: 88
Period size: 34 Copynumber: 2.3 Consensus size: 34
5074971 GTCTTTGCAA
* *
5074981 TGAACCTTAAACCTAAACTCTAAACTATAAACCT
1 TGAACCCTAAACCTAAACTCTAAACTATAAACAT
* ** *
5075015 TAAAAACTAAACCCTAAACT-TAAATTATAAACAT
1 TGAACCCTAAA-CCTAAACTCTAAACTATAAACAT
5075049 TGAACCCTAAA
1 TGAACCCTAAA
5075060 TACTAAATAC
Statistics
Matches: 35, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
34 27 0.77
35 8 0.23
ACGTcount: A:0.49, C:0.23, G:0.03, T:0.25
Consensus pattern (34 bp):
TGAACCCTAAACCTAAACTCTAAACTATAAACAT
Found at i:5075073 original size:28 final size:28
Alignment explanation
Indices: 5074986--5075112 Score: 102
Period size: 28 Copynumber: 4.6 Consensus size: 28
5074976 TGCAATGAAC
* *
5074986 CTTAAAC-CTAAACTCTAAACTA-TAAAC
1 CTTAAACACTAAACCCTAAA-TACTAAAA
* *
5075013 CTTAAAAACTAAACCCT-AA-ACTTAAA
1 CTTAAACACTAAACCCTAAATACTAAAA
* * *
5075039 TTATAAACATTGAACCCTAAATACTAAATA
1 CT-TAAACACTAAACCCTAAATACTAAA-A
* *
5075069 C-TAAACCCTAAACTCTAAATACTAAAA
1 CTTAAACACTAAACCCTAAATACTAAAA
*
5075096 CTTAAACCCTAAACCCT
1 CTTAAACACTAAACCCT
5075113 TAATTCGATT
Statistics
Matches: 78, Mismatches: 15, Indels: 13
0.74 0.14 0.12
Matches are distributed among these distances:
25 1 0.01
26 4 0.05
27 22 0.28
28 45 0.58
29 5 0.06
30 1 0.01
ACGTcount: A:0.49, C:0.25, G:0.01, T:0.25
Consensus pattern (28 bp):
CTTAAACACTAAACCCTAAATACTAAAA
Found at i:5075086 original size:21 final size:21
Alignment explanation
Indices: 5075051--5075108 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
5075041 ATAAACATTG
5075051 AACCCTAAA-TACTAAATACTA
1 AACCCTAAACT-CTAAATACTA
5075072 AACCCTAAACTCTAAATACTA
1 AACCCTAAACTCTAAATACTA
* * *
5075093 AAACTTAAACCCTAAA
1 AACCCTAAACTCTAAA
5075109 CCCTTAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
21 32 0.97
22 1 0.03
ACGTcount: A:0.52, C:0.26, G:0.00, T:0.22
Consensus pattern (21 bp):
AACCCTAAACTCTAAATACTA
Found at i:5076304 original size:23 final size:23
Alignment explanation
Indices: 5076274--5076346 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
5076264 ATACTTTACA
*
5076274 ATATAAACACTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
5076297 ATATAAACGCTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
* *
5076320 ATATAAGCGCTACCTATTACATC
1 ATATAAACGCTACCTATTACATT
5076343 ATAT
1 ATAT
5076347 TTTTACCTAT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.40, C:0.22, G:0.04, T:0.34
Consensus pattern (23 bp):
ATATAAACGCTACCTATTACATT
Found at i:5076737 original size:23 final size:23
Alignment explanation
Indices: 5076711--5076773 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
5076701 ATATAACAAC
5076711 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
5076734 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
5076757 TACCTATTACATCATAT
1 TACCTATTACATTATAT
5076774 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:5076750 original size:427 final size:430
Alignment explanation
Indices: 5075923--5076974 Score: 1963
Period size: 427 Copynumber: 2.5 Consensus size: 430
5075913 TATTACATTA
*
5075923 TATTATATTGAAAGTATCCATACTTTTTATAAAAATGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTCTTTTAAAGTTATGTAAT
*
5075988 TTATGTTTTAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
66 TTATGTTTCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
5076053 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTT
130 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTT
*
5076118 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
195 AATAATAATATATATCGAAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
5076183 CTTAAAACTCAATCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
260 CTTAAAACTCAATCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
* *
5076248 TTTATAAAAATGATAGATACTTTACAATATAAACACTACCTATTACATTATATAAACGCTACCTA
325 TTTATAAAAAGGATAGATACTTTACAATATAAACACTACCTATTACATTATATAAACGATACCTA
5076313 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
390 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
5076354 TATTATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTCTTTTAAAGTTATGTAAT
5076419 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
*
5076484 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
131 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTA
5076549 ATAAT-A-ATATATCGAAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
196 ATAATAATATATATCGAAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
*
5076612 TTAAAACTCACTC-AAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
261 TTAAAACTCAATCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
5076676 TTATAAAAAGGATAGATACTTTACAATAT-AACAACTACCTATTACATTATATAAACGATACCTA
326 TTATAAAAAGGATAGATACTTTACAATATAAAC-ACTACCTATTACATTATATAAACGATACCTA
5076740 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
390 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
5076781 TATTATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTCTTTTAAAGTTATGTAAT
*
5076846 TTATGTTTCAA-TTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
*
5076910 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAA-TTTAAATTTA
131 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTA
5076974 A
196 A
5076975 CAACATTAAC
Statistics
Matches: 610, Mismatches: 10, Indels: 8
0.97 0.02 0.01
Matches are distributed among these distances:
425 10 0.02
426 108 0.18
427 226 0.37
428 68 0.11
429 1 0.00
430 123 0.20
431 74 0.12
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.42
Consensus pattern (430 bp):
TATTATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTCTTTTAAAGTTATGTAAT
TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTA
ATAATAATATATATCGAAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
TTAAAACTCAATCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
TTATAAAAAGGATAGATACTTTACAATATAAACACTACCTATTACATTATATAAACGATACCTAT
TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
Found at i:5077247 original size:39 final size:39
Alignment explanation
Indices: 5077193--5077271 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
5077183 TCAAGTTGTA
*
5077193 GATTTTGATTTCCTTTTGCTTGGCATCATATGAGATTTG
1 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
*
5077232 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGCTTTG
1 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
5077271 G
1 G
5077272 GGTTTGATGA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.16, C:0.15, G:0.22, T:0.47
Consensus pattern (39 bp):
GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
Found at i:5077572 original size:18 final size:18
Alignment explanation
Indices: 5077549--5077585 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
5077539 CGAAATATAT
5077549 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
5077567 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
5077585 A
1 A
5077586 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:5078006 original size:25 final size:25
Alignment explanation
Indices: 5077972--5078021 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
5077962 ATTATTTTTC
*
5077972 CAAATAATGTACCCATAACAATGTT
1 CAAATAATGTACCCACAACAATGTT
5077997 CAAATAATGTACCCACAACAATGTT
1 CAAATAATGTACCCACAACAATGTT
5078022 TAATTGATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.44, C:0.22, G:0.08, T:0.26
Consensus pattern (25 bp):
CAAATAATGTACCCACAACAATGTT
Found at i:5078328 original size:23 final size:23
Alignment explanation
Indices: 5078302--5078364 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
5078292 ATATAACCAC
5078302 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
5078325 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
5078348 TACCTATTACATCATAT
1 TACCTATTACATTATAT
5078365 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:5078765 original size:25 final size:25
Alignment explanation
Indices: 5078708--5078773 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
5078698 CACTCAAAAG
*
5078708 ATGTATATACCTAAATATGTAGTTA
1 ATGTACATACCTAAATATGTAGTTA
***
5078733 ACAAACATACCTAAATATGTAGTTA
1 ATGTACATACCTAAATATGTAGTTA
*
5078758 TTGTACATACCTAAAT
1 ATGTACATACCTAAAT
5078774 TTAATGATAA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.42, C:0.14, G:0.09, T:0.35
Consensus pattern (25 bp):
ATGTACATACCTAAATATGTAGTTA
Found at i:5081584 original size:183 final size:183
Alignment explanation
Indices: 5081243--5081585 Score: 530
Period size: 183 Copynumber: 1.9 Consensus size: 183
5081233 TTAAAATTAC
*
5081243 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
1 CGACACTTTTTGAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
* * **
5081308 ATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCACTCATAAAACCGATATATTTATACCGGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCACGCATAAAACCGATATATTTATACCGGAA
* *
5081373 ATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
131 ACATTACAAAATTACCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
5081426 CGACACTTTTTGACAAT-GTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAA
1 CGACACTTTTTGA-AATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAA
*
5081490 TATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACC-AGTATATTTATACC-G
65 TATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCACGCATAAAACCGA-TATATTTATACCGG
* * **
5081553 AAAGCATTGCAAATTTACCTATTTTATTATAAT
129 AAA-CATTACAAAATTACCTATTACATTATAAT
5081586 ATGTTGAAAG
Statistics
Matches: 145, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
182 3 0.02
183 139 0.96
184 3 0.02
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.34
Consensus pattern (183 bp):
CGACACTTTTTGAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCACGCATAAAACCGATATATTTATACCGGAA
ACATTACAAAATTACCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
Found at i:5081958 original size:21 final size:22
Alignment explanation
Indices: 5081933--5081984 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
5081923 ATACTTTACA
*
5081933 ATATAACCACTACCTATTACATT
1 ATATAAACA-TACCTATTACATT
5081956 ATATAAACGATACCTATTACATT
1 ATATAAAC-ATACCTATTACATT
5081979 ATATAA
1 ATATAA
5081985 GTGCTACCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (22 bp):
ATATAAACATACCTATTACATT
Found at i:5081969 original size:23 final size:23
Alignment explanation
Indices: 5081943--5082005 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
5081933 ATATAACCAC
5081943 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
5081966 TACCTATTACATTATATAAGTGC
1 TACCTATTACATTATATAAACGA
*
5081989 TACCTATTACATCATAT
1 TACCTATTACATTATAT
5082006 TTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.05, T:0.38
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:5082392 original size:431 final size:431
Alignment explanation
Indices: 5081589--5082638 Score: 1919
Period size: 431 Copynumber: 2.4 Consensus size: 431
5081579 TTATAATATG
*
5081589 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATATTTTTTTTAAAGATATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGATATGTAATTTATGTT
*
5081654 TCAATTTGTTTTAAGTATGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
66 TCAATTTTTTTTAAGTATGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
*
5081719 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTAAGAATTTTTAATTTAATAATA
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTAATAATA
5081784 ATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAA
196 ATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAA
* *
5081849 CTCACTCAAAAGATAATCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATAGACACTTTTATAA
261 CTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTAAAAAAAGTATAGACACTTTTATAA
5081914 AAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACATT
326 AAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACATT
*
5081979 ATATAAGTGCTACCTATTACATCATATTTTTACCTATTATA
391 ATATAAGCGCTACCTATTACATCATATTTTTACCTATTATA
* * *
5082020 TTGAAAGTGTCCACAGTTTTTATAAAAATGATCGATACTTTTTTTAAAGATATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGATATGTAATTTATGTT
5082085 TCAATTTTTTTTAAGTATGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
66 TCAATTTTTTTTAAGTATGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
*
5082150 CAAAAAAATATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTAATAATA
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTAATAATA
5082215 ATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAA
196 ATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAA
5082280 CTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTAAAAAAAGTATAGACACTTTTATAA
261 CTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTAAAAAAAGTATAGACACTTTTATAA
5082345 AAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACATT
326 AAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACATT
5082410 ATATAAGCGCTACCTATTACATCATATTTTTACCTATTATA
391 ATATAAGCGCTACCTATTACATCATATTTTTACCTATTATA
*
5082451 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAAGTTATGTAATTTATGT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTT-AAAGATATGTAATTTATGT
* * *
5082516 TTCAA--TTTTTTAA-TAGCGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTTATTTA
65 TTCAATTTTTTTTAAGTA-TGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTG
*
5082578 CACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAA-TTTAAATTTAA
129 CACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTAA
5082639 CAACATTAAC
Statistics
Matches: 598, Mismatches: 19, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
429 12 0.02
430 100 0.17
431 463 0.77
432 23 0.04
ACGTcount: A:0.39, C:0.11, G:0.08, T:0.41
Consensus pattern (431 bp):
TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGATATGTAATTTATGTT
TCAATTTTTTTTAAGTATGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTAATAATA
ATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAA
CTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTAAAAAAAGTATAGACACTTTTATAA
AAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACATT
ATATAAGCGCTACCTATTACATCATATTTTTACCTATTATA
Found at i:5082400 original size:23 final size:23
Alignment explanation
Indices: 5082374--5082436 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
5082364 ATATAACCAC
5082374 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
5082397 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
5082420 TACCTATTACATCATAT
1 TACCTATTACATTATAT
5082437 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:5084041 original size:9 final size:9
Alignment explanation
Indices: 5084027--5084070 Score: 52
Period size: 9 Copynumber: 4.6 Consensus size: 9
5084017 CTTGTTTGGA
5084027 TCATCATCT
1 TCATCATCT
5084036 TCATCATCAT
1 TCATCATC-T
*
5084046 CATCATCATCG
1 --TCATCATCT
5084057 TCATCATCT
1 TCATCATCT
5084066 TCATC
1 TCATC
5084071 GTCAGATTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
9 21 0.70
10 1 0.03
12 8 0.27
ACGTcount: A:0.25, C:0.34, G:0.02, T:0.39
Consensus pattern (9 bp):
TCATCATCT
Found at i:5084119 original size:6 final size:6
Alignment explanation
Indices: 5084030--5084121 Score: 76
Period size: 6 Copynumber: 15.3 Consensus size: 6
5084020 GTTTGGATCA
* * * * * * **
5084030 TCATCT TCATCA TCATCA TCATCA TCGTCA TCATCT TCATCG TCAGAT
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT
* * * *
5084078 TCATCG TCATCA TCATCG TCAGCT TCATCT TCATCT TCATCT TC
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TC
5084122 TGCGACCGCT
Statistics
Matches: 70, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
6 70 1.00
ACGTcount: A:0.22, C:0.33, G:0.07, T:0.39
Consensus pattern (6 bp):
TCATCT
Found at i:5086134 original size:197 final size:198
Alignment explanation
Indices: 5085586--5086553 Score: 1785
Period size: 198 Copynumber: 4.9 Consensus size: 198
5085576 TTTAAATTAG
*
5085586 TATCGACATAAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATAC
1 TATCGACACAAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATAC
5085651 TTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGATC
66 TTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGATC
* *
5085716 GACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGACCAA
131 GACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCAA
5085781 AAA
196 AAA
*
5085784 TATCGACACCAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATAC
1 TATCGACACAAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATAC
5085849 TTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGATC
66 TTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGATC
5085914 GACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCAA
131 GACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCAA
5085979 AAA
196 AAA
*
5085982 TATCGACACAAACT-AAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCAGTATAC
1 TATCGACACAAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATAC
*
5086046 TTGTACCGGTTAGATTGAAAAATTAAATATTACATTATACTTTTGGGTTCGATGTTTTTGGGATC
66 TTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGATC
* *
5086111 CACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGACCAA
131 GACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCAA
5086176 AAA
196 AAA
*
5086179 TATCGACACCAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATAC
1 TATCGACACAAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATAC
5086244 TTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGATC
66 TTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGATC
*
5086309 GACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAACAA
131 GACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCAA
5086374 AAA
196 AAA
* *
5086377 TATCGACACAAACTAAAATAGTGTTGACACATTATTTAGACATATTCTCTCATAAAACCGGCATA
1 TATCGACACAAACTAAAA-AGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
*
5086442 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
65 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGG-GTTCGATGTTTTTGGGA
*
5086507 TCGACACGTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTT
129 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTT
5086554 GGCCATATTG
Statistics
Matches: 747, Mismatches: 20, Indels: 4
0.97 0.03 0.01
Matches are distributed among these distances:
197 192 0.26
198 402 0.54
199 91 0.12
200 62 0.08
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (198 bp):
TATCGACACAAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATAC
TTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGATC
GACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCAA
AAA
Found at i:5086331 original size:395 final size:396
Alignment explanation
Indices: 5085586--5086553 Score: 1812
Period size: 395 Copynumber: 2.4 Consensus size: 396
5085576 TTTAAATTAG
*
5085586 TATCGACATAAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATAC
1 TATCGACACAAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATAC
5085651 TTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGATC
66 TTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGATC
*
5085716 GACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGACCAA
131 GACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGACCAA
5085781 AAATATCGACACCAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTA
196 AAATATCGACACCAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTA
5085846 TACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGG
261 TACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGG
*
5085911 ATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAC
326 ATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAA
5085976 CAAAAA
391 CAAAAA
*
5085982 TATCGACACAAACT-AAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCAGTATAC
1 TATCGACACAAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATAC
*
5086046 TTGTACCGGTTAGATTGAAAAATTAAATATTACATTATACTTTTGGGTTCGATGTTTTTGGGATC
66 TTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGATC
*
5086111 CACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGACCAA
131 GACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGACCAA
5086176 AAATATCGACACCAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTA
196 AAATATCGACACCAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTA
5086241 TACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGG
261 TACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGG
5086306 ATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAA
326 ATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAA
5086371 CAAAAA
391 CAAAAA
* *
5086377 TATCGACACAAACTAAAATAGTGTTGACACATTATTTAGACATATTCTCTCATAAAACCGGCATA
1 TATCGACACAAACTAAAA-AGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
*
5086442 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
65 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGG-GTTCGATGTTTTTGGGA
* *
5086507 TCGACACGTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTT
129 TCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTT
5086554 GGCCATATTG
Statistics
Matches: 555, Mismatches: 14, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
395 390 0.70
396 16 0.03
397 89 0.16
398 60 0.11
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (396 bp):
TATCGACACAAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATAC
TTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGATC
GACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGACCAA
AAATATCGACACCAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTA
TACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGG
ATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAA
CAAAAA
Found at i:5086718 original size:19 final size:19
Alignment explanation
Indices: 5086672--5086720 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
5086662 TTATATTCAC
*
5086672 ATACAAAAATATAAATCGT
1 ATACAAAATTATAAATCGT
*
5086691 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
5086710 ATACAAAATTA
1 ATACAAAATTA
5086721 ACCCTACATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.57, C:0.10, G:0.02, T:0.31
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:5088549 original size:33 final size:33
Alignment explanation
Indices: 5088512--5088575 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
5088502 CATCTTAATA
*
5088512 TCACCCCTTAACACCCCAACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
* *
5088545 TCACCCCTCAACACCTCTACTTCTTTCACCA
1 TCACCCCTCAACACCCCAACTTCTTTCACCA
5088576 GTCCATCTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.23, C:0.48, G:0.00, T:0.28
Consensus pattern (33 bp):
TCACCCCTCAACACCCCAACTTCTTTCACCACT
Found at i:5088635 original size:21 final size:21
Alignment explanation
Indices: 5088610--5088653 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
5088600 CCCCTTATGC
5088610 CTCTCAAGTGTATCTTCGACT
1 CTCTCAAGTGTATCTTCGACT
* *
5088631 CTCTCAAGTTTCTCTTCGACT
1 CTCTCAAGTGTATCTTCGACT
5088652 CT
1 CT
5088654 TGATTGTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.32, G:0.11, T:0.41
Consensus pattern (21 bp):
CTCTCAAGTGTATCTTCGACT
Found at i:5090880 original size:17 final size:18
Alignment explanation
Indices: 5090858--5090900 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
5090848 ATATATCCGG
5090858 TATCATTT-TACCGGTTT
1 TATCATTTATACCGGTTT
5090875 TATCATTTTGATACCGGTTT
1 TATCA-TTT-ATACCGGTTT
5090895 TATCAT
1 TATCAT
5090901 ATTTTTACCT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 5 0.22
18 3 0.13
19 1 0.04
20 14 0.61
ACGTcount: A:0.21, C:0.16, G:0.12, T:0.51
Consensus pattern (18 bp):
TATCATTTATACCGGTTT
Found at i:5090909 original size:20 final size:19
Alignment explanation
Indices: 5090863--5090921 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 19
5090853 TCCGGTATCA
5090863 TTTTACCGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
5090882 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
* *
5090903 TTTTACCTGTTATATCATT
1 TTTTACCGGTTTTATCATT
5090922 GTGGATCGAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
19 3 0.09
20 28 0.82
21 3 0.09
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.54
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:5091134 original size:181 final size:183
Alignment explanation
Indices: 5090830--5091304 Score: 715
Period size: 181 Copynumber: 2.6 Consensus size: 183
5090820 CGTACTTACG
* *
5090830 AAAGTATCGACACTTTCAATATATCCGGTATCATTTTACCGGTTTTATCATTTTG-ATACCGGTT
1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGTATACCGGTT
* * * *
5090894 TTATCATATTTTTACCTGTTATATCATTGTGGATCGATATATTTTTTTAAAGTATCGACACATTA
66 TTATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACATTA
* *
5090959 TAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATA-T
131 TAGGAGCTAAAACTGCTTCTCATTTAAATTCACAAAGTGTCGATCCTTATATT
*
5091011 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGATTTTATCATTTTGTA-ACCGGTT
1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGTATACCGGTT
* *
5091075 TTATCATATTTTTACCTGGTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACTTTA
66 TTATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACATTA
** *
5091140 TAGGATTTAAAACTGCTTCTCATTTAAATTCACGAAGTGTCGATCCTTATATT
131 TAGGAGCTAAAACTGCTTCTCATTTAAATTCACAAAGTGTCGATCCTTATATT
* * * * * *
5091193 AAAGTACCGACACTTTAAATGTATCCGGTAGCGCTTTACCGGTTTTATCA-TTTCTATACCGGTT
1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGTATACCGGTT
* * *
5091257 TTGTCATAGTTTTACCTGTTATATCGTTTTGGATCGACACATTTTTTA
66 TTATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTA
5091305 TTTGGATCGA
Statistics
Matches: 266, Mismatches: 25, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
181 169 0.64
182 97 0.36
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (183 bp):
AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGTATACCGGTT
TTATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACATTA
TAGGAGCTAAAACTGCTTCTCATTTAAATTCACAAAGTGTCGATCCTTATATT
Found at i:5091823 original size:229 final size:228
Alignment explanation
Indices: 5091373--5091863 Score: 903
Period size: 229 Copynumber: 2.1 Consensus size: 228
5091363 ACTTTTATAC
5091373 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
1 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
5091438 TTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAAT
66 TTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAAT
*
5091503 TATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAT
131 TATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAG
*
5091568 ATAATAATAAATATGTTTTCCACAGTGAAATAA
196 ATAATAATAAATATATTTTCCACAGTGAAATAA
*
5091601 GTATGAACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
1 GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAA-TT
*
5091666 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACACAAAA
65 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
*
5091731 TTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAA
130 TTATTTGATT-ATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAA
5091796 AGATAATAATAAATATATTTT-CACAGTGAAATAA
194 AGATAATAATAAATATATTTTCCACAGTGAAATAA
*
5091830 GTATGGACACTTTTATAAAAATGATAGATACTTT
1 GTATGGACACTTTTATAAAAATGATATATACTTT
5091864 ACAATATAAC
Statistics
Matches: 254, Mismatches: 7, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
228 61 0.24
229 121 0.48
230 72 0.28
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.45
Consensus pattern (228 bp):
GTATGGACACTTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTT
TTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAAT
TATTTGATTATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAG
ATAATAATAAATATATTTTCCACAGTGAAATAA
Found at i:5094654 original size:37 final size:37
Alignment explanation
Indices: 5094608--5094691 Score: 141
Period size: 37 Copynumber: 2.3 Consensus size: 37
5094598 TAGAAAGATT
*
5094608 AAATCCATAATTATAGGTTCCCTGCTGTGATACAAAG
1 AAATACATAATTATAGGTTCCCTGCTGTGATACAAAG
*
5094645 AAATACATAATTATAGGTTCCCTGCTGTGATACGAAG
1 AAATACATAATTATAGGTTCCCTGCTGTGATACAAAG
*
5094682 AAATATATAA
1 AAATACATAA
5094692 AATAAGAAGT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.30
Consensus pattern (37 bp):
AAATACATAATTATAGGTTCCCTGCTGTGATACAAAG
Found at i:5095602 original size:48 final size:45
Alignment explanation
Indices: 5095504--5095620 Score: 130
Period size: 48 Copynumber: 2.6 Consensus size: 45
5095494 AAGATATTTT
* * *
5095504 GCGGCATTTTTCGGATACAAACG-C-CACAAAAGGTCTGGTATATA
1 GCGGCGTTTTT-GGATACAAACGCCGCACAAAAGATATGGTATATA
*
5095548 GAGGCGTTTTTAGGATACAAACGCCGCAAGCAAAAGATATGGTATATA
1 GCGGCGTTTTT-GGATACAAACGCCGC-A-CAAAAGATATGGTATATA
* *
5095596 GCGGCGTTTTTTGTTACAAACGCCG
1 GCGGCGTTTTTGGATACAAACGCCG
5095621 ATATTGTTTT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
44 20 0.33
45 1 0.02
46 1 0.02
47 13 0.21
48 26 0.43
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.26
Consensus pattern (45 bp):
GCGGCGTTTTTGGATACAAACGCCGCACAAAAGATATGGTATATA
Found at i:5096009 original size:21 final size:21
Alignment explanation
Indices: 5095985--5096044 Score: 84
Period size: 21 Copynumber: 2.9 Consensus size: 21
5095975 CTGCTGATAT
*
5095985 GCTGCTTCTCTCTGTGCTGCC
1 GCTGCTTCTCTCTGTGCTGCA
5096006 GCTGCTTCTCTCTGTGCTGCA
1 GCTGCTTCTCTCTGTGCTGCA
** *
5096027 AATGCTTCTCTCTATGCT
1 GCTGCTTCTCTCTGTGCT
5096045 TTCACTACTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.07, C:0.33, G:0.20, T:0.40
Consensus pattern (21 bp):
GCTGCTTCTCTCTGTGCTGCA
Found at i:5099442 original size:20 final size:20
Alignment explanation
Indices: 5099405--5099443 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
5099395 CACTGTAGTG
5099405 TATGTACTTGGTGTTTTTGC
1 TATGTACTTGGTGTTTTTGC
5099425 TATGCTACTTGGTGTTTTT
1 TATG-TACTTGGTGTTTTT
5099444 TCTTATTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.10, C:0.10, G:0.23, T:0.56
Consensus pattern (20 bp):
TATGTACTTGGTGTTTTTGC
Found at i:5099497 original size:47 final size:47
Alignment explanation
Indices: 5099439--5099535 Score: 185
Period size: 47 Copynumber: 2.1 Consensus size: 47
5099429 CTACTTGGTG
*
5099439 TTTTTTCTTATTAAGTTGTTTTGTGTTTGAGGTATGGTTATAAAATA
1 TTTTTGCTTATTAAGTTGTTTTGTGTTTGAGGTATGGTTATAAAATA
5099486 TTTTTGCTTATTAAGTTGTTTTGTGTTTGAGGTATGGTTATAAAATA
1 TTTTTGCTTATTAAGTTGTTTTGTGTTTGAGGTATGGTTATAAAATA
5099533 TTT
1 TTT
5099536 ACAAATGTTT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.23, C:0.02, G:0.20, T:0.56
Consensus pattern (47 bp):
TTTTTGCTTATTAAGTTGTTTTGTGTTTGAGGTATGGTTATAAAATA
Found at i:5102442 original size:21 final size:21
Alignment explanation
Indices: 5102379--5102443 Score: 53
Period size: 21 Copynumber: 3.1 Consensus size: 21
5102369 CAACGAAGTC
*
5102379 AAAGATTGAACCTCAAAAAGG
1 AAAGAATGAACCTCAAAAAGG
* * *
5102400 AATGCAAT-ATACCT-GAATAGG
1 AAAG-AATGA-ACCTCAAAAAGG
*
5102421 AAAGAGTGAACCTCAAAAAGG
1 AAAGAATGAACCTCAAAAAGG
5102442 AA
1 AA
5102444 TGCAATATAT
Statistics
Matches: 32, Mismatches: 8, Indels: 8
0.67 0.17 0.17
Matches are distributed among these distances:
20 6 0.19
21 20 0.62
22 6 0.19
ACGTcount: A:0.51, C:0.14, G:0.20, T:0.15
Consensus pattern (21 bp):
AAAGAATGAACCTCAAAAAGG
Found at i:5104904 original size:41 final size:42
Alignment explanation
Indices: 5104859--5105015 Score: 110
Period size: 41 Copynumber: 3.8 Consensus size: 42
5104849 ATTCATGGTC
* * * *
5104859 TTTTGCGGCGTTTGTA-CACAAACGCCACTGAAGTAT-TACTA
1 TTTTGCGGCGTTTGTATAAAAAACGCCACTAAAGT-TCAACTA
* * *
5104900 TTTTGAGGTGTTT-TATAAAAAACGCCGCTAAAGTTCAACTA
1 TTTTGCGGCGTTTGTATAAAAAACGCCACTAAAGTTCAACTA
* * *
5104941 TTTTGCGGCGTTTGT-TGAAAAAAATGCCACTATAGATTACACCTA
1 TTTTGCGGCGTTTGTAT--AAAAAACGCCACTAAAG-TT-CAACTA
** *
5104986 --TTGTAGCGTTTGTATAAAAAACGCCGCTAA
1 TTTTGCGGCGTTTGTATAAAAAACGCCACTAA
5105016 CGTAATATTT
Statistics
Matches: 90, Mismatches: 18, Indels: 15
0.73 0.15 0.12
Matches are distributed among these distances:
40 3 0.03
41 41 0.46
42 13 0.14
43 25 0.28
44 3 0.03
45 5 0.06
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.32
Consensus pattern (42 bp):
TTTTGCGGCGTTTGTATAAAAAACGCCACTAAAGTTCAACTA
Found at i:5111226 original size:39 final size:39
Alignment explanation
Indices: 5111183--5111258 Score: 91
Period size: 39 Copynumber: 1.9 Consensus size: 39
5111173 ATTTAAGATT
*
5111183 AAAATAAATAATTTA-AAAATTAAGGTTAAATAATTTTAA
1 AAAATAAA-AATTTAGAAAATTAAGGTGAAATAATTTTAA
* * * *
5111222 AAAATAGAGATTTAGAATATTAGGGTGAAATAATTTT
1 AAAATAAAAATTTAGAAAATTAAGGTGAAATAATTTT
5111259 GAAATTAGAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
38 5 0.16
39 26 0.84
ACGTcount: A:0.53, C:0.00, G:0.12, T:0.36
Consensus pattern (39 bp):
AAAATAAAAATTTAGAAAATTAAGGTGAAATAATTTTAA
Found at i:5124678 original size:15 final size:15
Alignment explanation
Indices: 5124634--5124679 Score: 83
Period size: 15 Copynumber: 3.1 Consensus size: 15
5124624 TTTTTGATCA
*
5124634 AGCAATTGTAAGAGA
1 AGCAATTGTAAGAGG
5124649 AGCAATTGTAAGAGG
1 AGCAATTGTAAGAGG
5124664 AGCAATTGTAAGAGG
1 AGCAATTGTAAGAGG
5124679 A
1 A
5124680 ACCTTGATGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.43, C:0.07, G:0.30, T:0.20
Consensus pattern (15 bp):
AGCAATTGTAAGAGG
Found at i:5129591 original size:22 final size:21
Alignment explanation
Indices: 5129559--5129653 Score: 63
Period size: 20 Copynumber: 4.5 Consensus size: 21
5129549 ACTGAAAGGG
* *
5129559 AGTATCAATACCATAGTGTAGT
1 AGTATCGATACCAT-GTGTAGA
*
5129581 AGTATCGATA-C-TGAG-AGAA
1 AGTATCGATACCATGTGTAG-A
* *
5129600 AGATATCGGTACCATAGTATAGA
1 AG-TATCGATACCAT-GTGTAGA
*
5129623 AGTATCGATACCATG-GTAGG
1 AGTATCGATACCATGTGTAGA
*
5129643 GGTATCGATAC
1 AGTATCGATAC
5129654 TATTGAGTTT
Statistics
Matches: 57, Mismatches: 10, Indels: 14
0.70 0.12 0.17
Matches are distributed among these distances:
18 2 0.04
19 4 0.07
20 21 0.37
21 3 0.05
22 21 0.37
23 4 0.07
24 2 0.04
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (21 bp):
AGTATCGATACCATGTGTAGA
Found at i:5130127 original size:26 final size:26
Alignment explanation
Indices: 5130061--5130205 Score: 125
Period size: 26 Copynumber: 6.0 Consensus size: 26
5130051 TAAAATGAAT
*
5130061 CCATAAATGAAATGCATGAAAGGATG
1 CCATGAATGAAATGCATGAAAGGATG
* *
5130087 -CAT---T--AAGGCAAGAAAGGATG
1 CCATGAATGAAATGCATGAAAGGATG
*
5130107 CCATGAATGAAATACATGAAAGGATG
1 CCATGAATGAAATGCATGAAAGGATG
* * *
5130133 ACATAAATGAAATGCATGAAATGATG
1 CCATGAATGAAATGCATGAAAGGATG
*
5130159 -CAT---T--AAGGCATGAAAGGATG
1 CCATGAATGAAATGCATGAAAGGATG
*
5130179 CCATGAAAGAAATGCATGAAAGGATG
1 CCATGAATGAAATGCATGAAAGGATG
5130205 C
1 C
5130206 ATTAAGCATG
Statistics
Matches: 94, Mismatches: 13, Indels: 24
0.72 0.10 0.18
Matches are distributed among these distances:
20 28 0.30
21 6 0.06
22 2 0.02
24 1 0.01
25 6 0.06
26 51 0.54
ACGTcount: A:0.46, C:0.11, G:0.25, T:0.19
Consensus pattern (26 bp):
CCATGAATGAAATGCATGAAAGGATG
Found at i:5130133 original size:17 final size:18
Alignment explanation
Indices: 5130113--5130154 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
5130103 GATGCCATGA
* *
5130113 ATGAAATACATGAAA-GG
1 ATGAAATAAATGAAATGC
*
5130130 ATGACATAAATGAAATGC
1 ATGAAATAAATGAAATGC
5130148 ATGAAAT
1 ATGAAAT
5130155 GATGCATTAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.52, C:0.07, G:0.19, T:0.21
Consensus pattern (18 bp):
ATGAAATAAATGAAATGC
Found at i:5130151 original size:72 final size:72
Alignment explanation
Indices: 5130062--5130204 Score: 250
Period size: 72 Copynumber: 2.0 Consensus size: 72
5130052 AAAATGAATC
*
5130062 CATAAATGAAATGCATGAAAGGATGCATTAAGGCAAGAAAGGATGCCATGAATGAAATACATGAA
1 CATAAATGAAATGCATGAAAGGATGCATTAAGGCAAGAAAGGATGCCATGAAAGAAATACATGAA
5130127 AGGATGA
66 AGGATGA
* * *
5130134 CATAAATGAAATGCATGAAATGATGCATTAAGGCATGAAAGGATGCCATGAAAGAAATGCATGAA
1 CATAAATGAAATGCATGAAAGGATGCATTAAGGCAAGAAAGGATGCCATGAAAGAAATACATGAA
5130199 AGGATG
66 AGGATG
5130205 CATTAAGCAT
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.46, C:0.10, G:0.25, T:0.19
Consensus pattern (72 bp):
CATAAATGAAATGCATGAAAGGATGCATTAAGGCAAGAAAGGATGCCATGAAAGAAATACATGAA
AGGATGA
Found at i:5130171 original size:46 final size:45
Alignment explanation
Indices: 5130121--5130236 Score: 180
Period size: 46 Copynumber: 2.6 Consensus size: 45
5130111 GAATGAAATA
* *
5130121 CATGAAAGGATGACATAAATGAAATGCATGAAATGATGCATTAAGG
1 CATGAAAGGATGCCATAAATGAAATGCATGAAAGGATGCATTAA-G
5130167 CATGAAAGGATGCCATGAAA-GAAATGCATGAAAGGATGCATTAAG
1 CATGAAAGGATGCCAT-AAATGAAATGCATGAAAGGATGCATTAAG
*
5130212 CATGAAATGATGCCATAAATGAAAT
1 CATGAAAGGATGCCATAAATGAAAT
5130237 TAACGAATAA
Statistics
Matches: 65, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
44 3 0.05
45 21 0.32
46 38 0.58
47 3 0.05
ACGTcount: A:0.46, C:0.10, G:0.23, T:0.21
Consensus pattern (45 bp):
CATGAAAGGATGCCATAAATGAAATGCATGAAAGGATGCATTAAG
Found at i:5130185 original size:13 final size:13
Alignment explanation
Indices: 5130167--5130205 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
5130157 TGCATTAAGG
5130167 CATGAAAGGATGC
1 CATGAAAGGATGC
*
5130180 CATGAAAGAAATG-
1 CATGAAAG-GATGC
5130193 CATGAAAGGATGC
1 CATGAAAGGATGC
5130206 ATTAAGCATG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
12 3 0.14
13 16 0.73
14 3 0.14
ACGTcount: A:0.44, C:0.13, G:0.28, T:0.15
Consensus pattern (13 bp):
CATGAAAGGATGC
Found at i:5130757 original size:81 final size:81
Alignment explanation
Indices: 5130603--5130764 Score: 227
Period size: 81 Copynumber: 2.0 Consensus size: 81
5130593 TAACAAAAAT
* * *
5130603 GTGTCAATCATGCTAGTTAGATGAAAGGTTAAATACATTTGAGTAAAATACTAAAAGCTTAATTG
1 GTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACATTTGAGTAAAAGACTAAAAGCTTAATGG
*
5130668 TGCCTTTGGCAGAAAG
66 TGCATTTGGCAGAAAG
* * *
5130684 GTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGGGTAAAAGACTAAATG-TCTAATG
1 GTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACATTTGAGTAAAAGACTAAAAGCT-TAATG
* *
5130748 GTGTATTTGGTAGAAAG
65 GTGCATTTGGCAGAAAG
5130765 ATGCTAATAA
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
80 1 0.01
81 70 0.99
ACGTcount: A:0.36, C:0.10, G:0.23, T:0.31
Consensus pattern (81 bp):
GTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACATTTGAGTAAAAGACTAAAAGCTTAATGG
TGCATTTGGCAGAAAG
Found at i:5130788 original size:81 final size:81
Alignment explanation
Indices: 5130604--5130789 Score: 214
Period size: 81 Copynumber: 2.3 Consensus size: 81
5130594 AACAAAAATG
* * * *
5130604 TGTCAATCATGCTAGTTAGATGAAAGGTTAAATACATTTGAGTAAAATACTAAAAGCTTAATTGT
1 TGTCAATAATGCAAGTTAGATGAAAGGTTAAATACATTTGAGTAAAAGACTAAAAGCTTAATGGT
* *
5130669 GCCTTTGGCAGAAAGG
66 GCATTTGGCAGAAAGA
* * * * *
5130685 TGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGGGTAAAAGACTAAATG-TCTAATGG
1 TGTCAATAATGCAAGTTAGATGAAAGGTTAAATACATTTGAGTAAAAGACTAAAAGCT-TAATGG
* *
5130749 TGTATTTGGTAGAAAGA
65 TGCATTTGGCAGAAAGA
*
5130766 TG-CTAATAATGCAAGTTGGATGAA
1 TGTC-AATAATGCAAGTTAGATGAA
5130790 GGATTAATTG
Statistics
Matches: 90, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
80 2 0.02
81 88 0.98
ACGTcount: A:0.37, C:0.10, G:0.23, T:0.31
Consensus pattern (81 bp):
TGTCAATAATGCAAGTTAGATGAAAGGTTAAATACATTTGAGTAAAAGACTAAAAGCTTAATGGT
GCATTTGGCAGAAAGA
Found at i:5131794 original size:17 final size:16
Alignment explanation
Indices: 5131774--5131821 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 16
5131764 TTTTATTTTG
5131774 TTAATTT-TTTTTGCAAT
1 TTAATTTATTTTT--AAT
5131791 TTAAATTTATTTCTTAAT
1 TT-AATTTATTT-TTAAT
5131809 TTAATTTATTTTT
1 TTAATTTATTTTT
5131822 TCTTTGGTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
16 2 0.07
17 11 0.39
18 10 0.36
19 3 0.11
20 2 0.07
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (16 bp):
TTAATTTATTTTTAAT
Found at i:5134181 original size:24 final size:24
Alignment explanation
Indices: 5134154--5134199 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
5134144 TTATTTTTAG
5134154 ATTTAAGAAGCTTATAAATATCAT
1 ATTTAAGAAGCTTATAAATATCAT
5134178 ATTTAAGAAGCTTATAAATATC
1 ATTTAAGAAGCTTATAAATATC
5134200 CTTCATGGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.37
Consensus pattern (24 bp):
ATTTAAGAAGCTTATAAATATCAT
Found at i:5134708 original size:24 final size:24
Alignment explanation
Indices: 5134681--5134726 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
5134671 TTATTTTTAG
5134681 ATTTAAGAAGCTTATAAATATCAT
1 ATTTAAGAAGCTTATAAATATCAT
5134705 ATTTAAGAAGCTTATAAATATC
1 ATTTAAGAAGCTTATAAATATC
5134727 CTTCATGGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.37
Consensus pattern (24 bp):
ATTTAAGAAGCTTATAAATATCAT
Found at i:5137738 original size:17 final size:18
Alignment explanation
Indices: 5137716--5137755 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
5137706 AATTGTGTTA
5137716 TTTTTAAT-TATGTTTGT
1 TTTTTAATGTATGTTTGT
* *
5137733 TTTTTAATGTTTTTTTGT
1 TTTTTAATGTATGTTTGT
5137751 TTTTT
1 TTTTT
5137756 TACATTTGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.12, C:0.00, G:0.10, T:0.78
Consensus pattern (18 bp):
TTTTTAATGTATGTTTGT
Found at i:5140620 original size:21 final size:21
Alignment explanation
Indices: 5140596--5140677 Score: 103
Period size: 21 Copynumber: 3.9 Consensus size: 21
5140586 TCCCTATCAT
5140596 CACTGCA-TCCATTTTAGATGG
1 CACTGCAGT-CATTTTAGATGG
5140617 CACTGCAGTCATTTTAGATGG
1 CACTGCAGTCATTTTAGATGG
* *
5140638 CACTGCAGTCATTTCAGATGA
1 CACTGCAGTCATTTTAGATGG
* * *
5140659 CACCGTAGTCATTTCAGAT
1 CACTGCAGTCATTTTAGAT
5140678 TCCACCATAG
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
21 55 0.98
22 1 0.02
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.32
Consensus pattern (21 bp):
CACTGCAGTCATTTTAGATGG
Found at i:5140695 original size:21 final size:21
Alignment explanation
Indices: 5140650--5140727 Score: 86
Period size: 21 Copynumber: 3.7 Consensus size: 21
5140640 CTGCAGTCAT
* * **
5140650 TTCAGATGACACCGTAGTCAT
1 TTCAGATGCCACCATAGTCGG
*
5140671 TTCAGATTCCACCATAG-CTGG
1 TTCAGATGCCACCATAGTC-GG
*
5140692 TTCAGATGCCACCACAGTCGG
1 TTCAGATGCCACCATAGTCGG
5140713 TTCAGATGCCACCAT
1 TTCAGATGCCACCAT
5140728 CACAGGTTTT
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
20 1 0.02
21 45 0.96
22 1 0.02
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (21 bp):
TTCAGATGCCACCATAGTCGG
Found at i:5143772 original size:101 final size:101
Alignment explanation
Indices: 5143563--5143790 Score: 246
Period size: 101 Copynumber: 2.2 Consensus size: 101
5143553 AGCTGGTAGT
* ** *
5143563 TGAATGCCTTCCCCTTGAACTTGAAGGCATCGTGTCATATGGGTTTTGAACTGAGTGATGCGTCG
1 TGAATG-CTTCCCCTTGAACTTGAAGGCATCGTGTCAAATGGGTACTGAACTGAGTGATGCATCG
* * * *
5143628 TAGGCATCTCCACATTGAGGTCAAAGAAGCTGCGAGT
65 AAGGCATCTCCACATTCAGGTCAAAGAAACTGCGAGA
* * * * * *
5143665 TTAATGCTTCCCCTGGAACTTGAATGCATCGTGTCAAATGGGTACTGAACAT-ATTGTTGTATC-
1 TGAATGCTTCCCCTTGAACTTGAAGGCATCGTGTCAAATGGGTACTGAAC-TGAGTGATGCATCG
* *
5143728 AAGGGCATCTCCATATTCAGGTCAAAGAAATTGAC-AGA
65 AA-GGCATCTCCACATTCAGGTCAAAGAAACTG-CGAGA
*
5143766 TGAATGCTTCCCCTTGAACTGGAAG
1 TGAATGCTTCCCCTTGAACTTGAAG
5143791 CGATGTTGCC
Statistics
Matches: 103, Mismatches: 20, Indels: 7
0.79 0.15 0.05
Matches are distributed among these distances:
100 1 0.01
101 95 0.92
102 7 0.07
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (101 bp):
TGAATGCTTCCCCTTGAACTTGAAGGCATCGTGTCAAATGGGTACTGAACTGAGTGATGCATCGA
AGGCATCTCCACATTCAGGTCAAAGAAACTGCGAGA
Found at i:5145750 original size:23 final size:23
Alignment explanation
Indices: 5145698--5145751 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
5145688 GAACAACAAG
5145698 ACGAGCAATGAGCATCGAGCTTA
1 ACGAGCAATGAGCATCGAGCTTA
* *
5145721 GCAAGCAATGAGCATCGAGCTTA
1 ACGAGCAATGAGCATCGAGCTTA
5145744 ACGAGCAA
1 ACGAGCAA
5145752 CAAGTTTTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.37, C:0.22, G:0.26, T:0.15
Consensus pattern (23 bp):
ACGAGCAATGAGCATCGAGCTTA
Found at i:5145820 original size:36 final size:36
Alignment explanation
Indices: 5145760--5145851 Score: 159
Period size: 36 Copynumber: 2.6 Consensus size: 36
5145750 AACAAGTTTT
*
5145760 CTTAAGGAGC-ACGAGTCGAGCAAATTTTTAACGAG
1 CTTAACGAGCAACGAGTCGAGCAAATTTTTAACGAG
*
5145795 CTTAACGAGCAACGAGTCGATCAAATTTTTAACGAG
1 CTTAACGAGCAACGAGTCGAGCAAATTTTTAACGAG
5145831 CTTAACGAGCAACGAGTCGAG
1 CTTAACGAGCAACGAGTCGAG
5145852 TAACAAAATT
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
35 9 0.17
36 44 0.83
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.22
Consensus pattern (36 bp):
CTTAACGAGCAACGAGTCGAGCAAATTTTTAACGAG
Found at i:5146138 original size:2 final size:2
Alignment explanation
Indices: 5146131--5146166 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
5146121 GGAACCTAAT
5146131 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
5146167 ATTACAATCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:5148945 original size:17 final size:17
Alignment explanation
Indices: 5148925--5148959 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
5148915 TATTTTTTGA
5148925 TATTTTTATTTAATTTT
1 TATTTTTATTTAATTTT
5148942 TATTTTTATTTAATTTT
1 TATTTTTATTTAATTTT
5148959 T
1 T
5148960 TAAATAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (17 bp):
TATTTTTATTTAATTTT
Found at i:5149647 original size:22 final size:25
Alignment explanation
Indices: 5149602--5149648 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
5149592 ATGAAGGCCT
*
5149602 TTTTTTTAATAGATATAGTTAATAA
1 TTTTTTTAATAGATATAGTAAATAA
5149627 TTTTTTTAATA-ATAT-G-AAATAA
1 TTTTTTTAATAGATATAGTAAATAA
5149649 GTACAAGATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 5 0.24
23 1 0.05
24 4 0.19
25 11 0.52
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (25 bp):
TTTTTTTAATAGATATAGTAAATAA
Found at i:5149860 original size:30 final size:30
Alignment explanation
Indices: 5149826--5149888 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
5149816 CAAATTAGTT
*
5149826 ACTAACGTTATCGTTTATTACAAAATGGTC
1 ACTAACATTATCGTTTATTACAAAATGGTC
* *
5149856 ACTAACATTATTGTTTGTTACAAAATGGTC
1 ACTAACATTATCGTTTATTACAAAATGGTC
5149886 ACT
1 ACT
5149889 TGACGTTAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (30 bp):
ACTAACATTATCGTTTATTACAAAATGGTC
Found at i:5150054 original size:45 final size:45
Alignment explanation
Indices: 5150003--5150092 Score: 126
Period size: 45 Copynumber: 2.0 Consensus size: 45
5149993 TGTTAGTGAT
* * * *
5150003 TTGCTGCTAAGCATAGCTATTGAAACATTATTCTAAAATGGGATA
1 TTGCTGCTAAACATAGCTACTCAAACATCATTCTAAAATGGGATA
* *
5150048 TTGCTGCTAAACATGGCTACTCAAACATCATTCTCAAATGGGATA
1 TTGCTGCTAAACATAGCTACTCAAACATCATTCTAAAATGGGATA
5150093 ATATGCTAGT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (45 bp):
TTGCTGCTAAACATAGCTACTCAAACATCATTCTAAAATGGGATA
Found at i:5152137 original size:26 final size:24
Alignment explanation
Indices: 5152101--5152154 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
5152091 GGCACCGGAG
5152101 TAAAG-AA-GAAGAAGAAG-AGAA
1 TAAAGAAAGGAAGAAGAAGAAGAA
5152122 TAAAGAAAGGAAGAAGAAGAAGAA
1 TAAAGAAAGGAAGAAGAAGAAGAA
5152146 TAAAGAAAG
1 TAAAGAAAG
5152155 AAATGATTGG
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
21 5 0.17
22 2 0.07
23 10 0.33
24 13 0.43
ACGTcount: A:0.67, C:0.00, G:0.28, T:0.06
Consensus pattern (24 bp):
TAAAGAAAGGAAGAAGAAGAAGAA
Found at i:5152407 original size:18 final size:18
Alignment explanation
Indices: 5152372--5152416 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
5152362 GCGATGTTGT
*
5152372 TATTATTATTTAATAAAA
1 TATTATTATTTAAGAAAA
*
5152390 TATTATTATTTGAGAAAA
1 TATTATTATTTAAGAAAA
*
5152408 -ACTATTATT
1 TATTATTATT
5152417 AGCAAATGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 8 0.33
18 16 0.67
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.49
Consensus pattern (18 bp):
TATTATTATTTAAGAAAA
Found at i:5153269 original size:5 final size:5
Alignment explanation
Indices: 5153259--5153396 Score: 276
Period size: 5 Copynumber: 27.6 Consensus size: 5
5153249 AAAAGAATGT
5153259 ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG
1 ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG
5153309 ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG
1 ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG
5153359 ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATA
1 ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATA
5153397 ACACTATTTA
Statistics
Matches: 133, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 133 1.00
ACGTcount: A:0.41, C:0.00, G:0.20, T:0.40
Consensus pattern (5 bp):
ATATG
Found at i:5153420 original size:14 final size:14
Alignment explanation
Indices: 5153401--5153447 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
5153391 ATGATAACAC
5153401 TATTTAATTTAATT
1 TATTTAATTTAATT
* *
5153415 TATTTAAATTCATT
1 TATTTAATTTAATT
5153429 TATTT-ATTTATATT
1 TATTTAATTTA-ATT
5153443 TATTT
1 TATTT
5153448 CTTAATTTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
13 3 0.11
14 25 0.89
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (14 bp):
TATTTAATTTAATT
Found at i:5153447 original size:18 final size:18
Alignment explanation
Indices: 5153401--5153458 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 18
5153391 ATGATAACAC
5153401 TATTTAATTTAATTTATTTA
1 TATTT-ATTT-ATTTATTTA
* *
5153421 AATTCATTTATTTATTTA
1 TATTTATTTATTTATTTA
* *
5153439 TATTTATTTCTTAATTTA
1 TATTTATTTATTTATTTA
5153457 TA
1 TA
5153459 CTTTTATAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
18 25 0.78
19 4 0.12
20 3 0.09
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (18 bp):
TATTTATTTATTTATTTA
Found at i:5154532 original size:22 final size:22
Alignment explanation
Indices: 5154504--5154552 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
5154494 TAAAATTAAA
5154504 TATTTAAATTATATTAGTATTT
1 TATTTAAATTATATTAGTATTT
5154526 TATTTAAATTATATTAGTATTT
1 TATTTAAATTATATTAGTATTT
5154548 TATTT
1 TATTT
5154553 TGTAAACATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (22 bp):
TATTTAAATTATATTAGTATTT
Found at i:5154991 original size:61 final size:60
Alignment explanation
Indices: 5154890--5155026 Score: 140
Period size: 61 Copynumber: 2.3 Consensus size: 60
5154880 TTAAGATGAG
* *
5154890 ATAAAATATATATTTTTATGTTAATAAGAAAAAAATTATATAT-ATATTTTAATA-AATAA
1 ATAAAATATATATTTTTATGTTAATAAGAAAAAAATTATATATAATAATTTAAGATAA-AA
** *
5154949 CATGAAAATATATA-TTTTATTGTT-ATTTGATAATAAAA-TATATTTAATAATTTAAGATAAAA
1 -AT-AAAATATATATTTTTA-TGTTAATAAGA-AA-AAAATTATATATAATAATTTAAGATAAAA
5155011 ATAAAATATATATTTT
1 ATAAAATATATATTTT
5155027 CAACTTAAAA
Statistics
Matches: 65, Mismatches: 5, Indels: 13
0.78 0.06 0.16
Matches are distributed among these distances:
60 21 0.32
61 27 0.42
62 15 0.23
63 2 0.03
ACGTcount: A:0.51, C:0.01, G:0.04, T:0.44
Consensus pattern (60 bp):
ATAAAATATATATTTTTATGTTAATAAGAAAAAAATTATATATAATAATTTAAGATAAAA
Found at i:5155075 original size:33 final size:32
Alignment explanation
Indices: 5155038--5155155 Score: 133
Period size: 33 Copynumber: 3.9 Consensus size: 32
5155028 AACTTAAAAA
*
5155038 ACATAAATTATTATAAAATAAAGTTAATACTAT
1 ACATAAATTATTATAAAATCAAGTTAATA-TAT
5155071 ACATAAATTATTATAAAATCAAGTTAAT-TA-
1 ACATAAATTATTATAAAATCAAGTTAATATAT
* * * *
5155101 A-GTTAATTGTTATAAAAT----TAAATATAT
1 ACATAAATTATTATAAAATCAAGTTAATATAT
5155128 ACATAAATTATTATAAAATCAAGTTAAT
1 ACATAAATTATTATAAAATCAAGTTAAT
5155156 TATTATAAAA
Statistics
Matches: 69, Mismatches: 9, Indels: 15
0.74 0.10 0.16
Matches are distributed among these distances:
25 4 0.06
26 2 0.03
27 1 0.01
28 14 0.20
29 14 0.20
30 1 0.01
31 2 0.03
32 4 0.06
33 27 0.39
ACGTcount: A:0.53, C:0.05, G:0.04, T:0.38
Consensus pattern (32 bp):
ACATAAATTATTATAAAATCAAGTTAATATAT
Found at i:5155133 original size:57 final size:52
Alignment explanation
Indices: 5155055--5155222 Score: 179
Period size: 48 Copynumber: 3.2 Consensus size: 52
5155045 TTATTATAAA
*
5155055 ATAAAGTT-AATACTATACATAAATTATTATAAAATCAAGTTAATTAAGTTAATTGTT
1 ATAAAATTAAATA-TATACATAAATTATTATAAAATCAAGTTAATTAA-TT-A---TT
5155112 ATAAAATTAAATATATACATAAATTATTATAAAATCAAG----TTAATTATT
1 ATAAAATTAAATATATACATAAATTATTATAAAATCAAGTTAATTAATTATT
* * *
5155160 ATAAAATCAAATATAAACATAAATTAATATAAAATCAAGTTAATT-ATTA-T
1 ATAAAATTAAATATATACATAAATTATTATAAAATCAAGTTAATTAATTATT
*
5155210 AAAAAATTCAAAT
1 ATAAAATT-AAAT
5155223 GCATACGTAC
Statistics
Matches: 99, Mismatches: 6, Indels: 18
0.80 0.05 0.15
Matches are distributed among these distances:
48 38 0.38
50 7 0.07
51 9 0.09
52 4 0.04
53 4 0.04
57 33 0.33
58 4 0.04
ACGTcount: A:0.54, C:0.05, G:0.04, T:0.37
Consensus pattern (52 bp):
ATAAAATTAAATATATACATAAATTATTATAAAATCAAGTTAATTAATTATT
Found at i:5155152 original size:48 final size:48
Alignment explanation
Indices: 5155100--5155213 Score: 192
Period size: 48 Copynumber: 2.4 Consensus size: 48
5155090 CAAGTTAATT
* * * *
5155100 AAGTTAATTGTTATAAAATTAAATATATACATAAATTATTATAAAATC
1 AAGTTAATTATTATAAAATCAAATATAAACATAAATTAATATAAAATC
5155148 AAGTTAATTATTATAAAATCAAATATAAACATAAATTAATATAAAATC
1 AAGTTAATTATTATAAAATCAAATATAAACATAAATTAATATAAAATC
5155196 AAGTTAATTATTATAAAA
1 AAGTTAATTATTATAAAA
5155214 AATTCAAATG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 62 1.00
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.37
Consensus pattern (48 bp):
AAGTTAATTATTATAAAATCAAATATAAACATAAATTAATATAAAATC
Found at i:5159982 original size:31 final size:31
Alignment explanation
Indices: 5159921--5159982 Score: 72
Period size: 31 Copynumber: 2.0 Consensus size: 31
5159911 ATTCGTTTTG
* * *
5159921 CAAAAAAAATAACAAACTATTAGACTAATTT
1 CAAAAAAAATAACAAAATATTAAACCAATTT
*
5159952 CAAACAAAATAACATAAAT-TTAAACCAATTT
1 CAAAAAAAATAACA-AAATATTAAACCAATTT
5159983 ACTATATAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
31 23 0.88
32 3 0.12
ACGTcount: A:0.58, C:0.15, G:0.02, T:0.26
Consensus pattern (31 bp):
CAAAAAAAATAACAAAATATTAAACCAATTT
Found at i:5160056 original size:915 final size:914
Alignment explanation
Indices: 5157322--5160067 Score: 4869
Period size: 909 Copynumber: 3.0 Consensus size: 914
5157312 AGTTTCTTCA
* *
5157322 TCTTTG-TTGGAATCATCATGGATTTCTCCCCATCGATTTTCATCATCAACATCAACAGTCAATT
1 TCTTTGCTT-GAATCATCATGGATTTCTCCCCATCGATTTTCAGCATCAACATCAACATTCAATT
*
5157386 -CGAGTTATATATGTTTCTCTCCTCGTACTCTACTTTTGTGGATGTTCCACCGACTTTATTTCCA
65 CCGAGTTATATATGTTTCTCTCCTCGTACTCTACTTTTGTGGACGTTCCACCGACTTTATTTCCA
5157450 CTTTCCAATAGCACCATAAAATTGTTTATCGATTTGTATGTCTGGTCCTCAAACTCACTTCCAAA
130 CTTTCCAATAGCACCATAAAATTGTTTATCGATTTGTATGTCTGGTCCTCAAACTCACTTCCAAA
*
5157515 AGCCGTTTGAGATGAATTTCCAGCCACATTTCTTGATGACCCAGGAACATCAGATATCTTACGCA
195 AGCCATTTGAGATGAATTTCCAGCCACATTTCTTGATGACCCAGGAACATCAGATATCTTACGCA
5157580 CATCAACAAATAACTCAATTACTGAAATATTTGTTAACTCATGTAATCCAATCATGGTTCTAATA
260 CATCAACAAATAACTCAATTACTGAAATATTTGTTAACTCATGTAATCCAATCATGGTTCTAATA
*
5157645 TCATCATCTTCTTCAACTAGTACTGCATCATATCTAACTGGATTGGGACATACCATGAACTTGTA
325 TCATCATCTTCTTCAACTAGTACTGCAACATATCTAACTGGATTGGGACATACCATGAACTTGTA
5157710 CTTCAAACCATAGCTCGGATTTTCCTTTTTATCCTCTGCTTCATTTCTACAAATGTGATGTCCCT
390 CTTCAAACCATAGCTCGGATTTTCCTTTTTATCCTCTGCTTCATTTCTACAAATGTGATGTCCCT
5157775 TTTGAACATCATATTTATAGGTCTTTCAGACTAAAAAACAACTTCGACCTCATTTTCCATAATAT
455 TTTGAACATCATATTTATAGGTCTTTCAGACTAAAAAACAACTTCGACCTCATTTTCCATAATAT
*
5157840 ATTCATTATAATGGACAATCGTGAAAAACTTATTGCTCATTTTCTCTACAAATTCAAAATTTTTA
520 ATTCATTATAATGGACAATCGTGAAAAACTTATTGCTCATTTTCTCTACAAATTCAAAA-ATTTA
5157905 TTTAGAATAAAAAAAATTATAGTACACTATGATCATAAATCGTAAAAATGATATAATACAATATA
584 TTTAGAAT-AAAAAAATTATAGTACACTATGATCATAAATCGTAAAAATGATATAATACAATATA
5157970 AAAACACTATTAACATAACAACAACCATAAAATTAACAAATATTTATAAAAATAATATTAACATA
648 AAAACACTATTAACATAACAACAACCATAAAATTAACAAATATTTATAAAAATAATATTAACATA
5158035 ATAATAAATAGTAAAATACTTCAAATAAAATTTCTTCAAACTTAATTCACCTTCGTTTTGCAAAA
713 ATAATAAATAGTAAAATACTTCAAATAAAATTTCTTCAAACTTAATTCACCTTCGTTTTGCAAAA
5158100 AAATATTAACAAACTATTAGACTAACTTCAAACAAAATAACAGAAAGTTAAACCAATTTACTATA
778 AAATATTAACAAACTATTAGACTAACTTCAAACAAAATAACAGAAAGTTAAACCAATTTACTATA
5158165 TAATACATACTCAAATTAGAATAACGAAAGAAAAACACACCAATTTTTTTGAAATGCTCCCTCTG
843 TAATACATACTCAAATTAGAATAACGAAAGAAAAACACACCAATTTTTTTGAAATGCTCCCTCTG
5158230 TTAATCT
908 TTAATCT
*
5158237 TCTTTGCTGGAATCATCATGGATTTCTCCCCATCGATTTTCAG------CATCAACATTCAATTC
1 TCTTTGCTTGAATCATCATGGATTTCTCCCCATCGATTTTCAGCATCAACATCAACATTCAATTC
5158296 CGAGTTATATATGTTTCTCTCCTCGTACTCTACTTTTGTGGACGTTCCACCGACTTTATTTCCAC
66 CGAGTTATATATGTTTCTCTCCTCGTACTCTACTTTTGTGGACGTTCCACCGACTTTATTTCCAC
5158361 TTTCCAATAGCACCATAAAATTGTTTATCGATTTGTATGTCTGGTCCTCAAACTCACTTCCAAAA
131 TTTCCAATAGCACCATAAAATTGTTTATCGATTTGTATGTCTGGTCCTCAAACTCACTTCCAAAA
5158426 GCCATTTGAGATGAATTTCCAGCCACATTTCTTGATGACCCAGGAACATCA-ATATCTTACGCAC
196 GCCATTTGAGATGAATTTCCAGCCACATTTCTTGATGACCCAGGAACATCAGATATCTTACGCAC
5158490 ATCAACAAATAACTCAATTACTGAAATATTTGTTAACTCATGTAATCCAATCATGGTTCTAATAT
261 ATCAACAAATAACTCAATTACTGAAATATTTGTTAACTCATGTAATCCAATCATGGTTCTAATAT
* *
5158555 CATCATCTTCTTCAACTAGTACTGCAGCATATGTAACTGGATTGGGACATACCATGAACTTGTAC
326 CATCATCTTCTTCAACTAGTACTGCAACATATCTAACTGGATTGGGACATACCATGAACTTGTAC
5158620 TTCAAACCATAGCTCGGATTTTCCTTTTTATCCTCTGCTTCATTTCTACAAATGTGATGTCCCTT
391 TTCAAACCATAGCTCGGATTTTCCTTTTTATCCTCTGCTTCATTTCTACAAATGTGATGTCCCTT
5158685 TTGAACATCATATTTATAGGTCTTTCAGACTAAAAAACAACTTCGACCTCATTTTCCATAATATA
456 TTGAACATCATATTTATAGGTCTTTCAGACTAAAAAACAACTTCGACCTCATTTTCCATAATATA
5158750 TTCATTATAATGGACAATCGTGAAAAACTTATTGCTCATTTTCTCTACAAATTCAAAAATTTTAT
521 TTCATTATAATGGACAATCGTGAAAAACTTATTGCTCATTTTCTCTACAAATTCAAAAA-TTTAT
5158815 TTAGAATAAAAAAAATTATAGTACACTATGATCATAAATCGTAAAAATGATATAATACAATATAA
585 TTAGAAT-AAAAAAATTATAGTACACTATGATCATAAATCGTAAAAATGATATAATACAATATAA
5158880 AAACACTATTAACATAACAACAACCATAAAATTAACAAATATTTATAAAAATAATATTAACATAA
649 AAACACTATTAACATAACAACAACCATAAAATTAACAAATATTTATAAAAATAATATTAACATAA
5158945 TAATAAATAGTAAAATACTTCAAATAAAATTTCTTCAAACTTAATTCACCTTCGTTTTGCAAAAA
714 TAATAAATAGTAAAATACTTCAAATAAAATTTCTTCAAACTTAATTCACCTTCGTTTTGCAAAAA
5159010 AATATTAACAAACTATTAGACTAACTTCAAACAAAATAACAGAAAGTTAAACCAATTTACTATAT
779 AATATTAACAAACTATTAGACTAACTTCAAACAAAATAACAGAAAGTTAAACCAATTTACTATAT
*
5159075 AATACATACTCAAATTAGAATAACGAAAGAAAAACACACCAATTTTTTTGAAATGCTCCATCTGT
844 AATACATACTCAAATTAGAATAACGAAAGAAAAACACACCAATTTTTTTGAAATGCTCCCTCTGT
5159140 TAATCT
909 TAATCT
5159146 TCTTTGCTTGAATCATCATGGATTTCTCCCCATCGATTTTCAGCATCAACATCAACATTCAATTC
1 TCTTTGCTTGAATCATCATGGATTTCTCCCCATCGATTTTCAGCATCAACATCAACATTCAATTC
* * * *
5159211 CGAGTTATATATGTTTCTCTCCTCGTACTCTACTATTGTGGACGTTCTACCAACTTCATTTCCAC
66 CGAGTTATATATGTTTCTCTCCTCGTACTCTACTTTTGTGGACGTTCCACCGACTTTATTTCCAC
* *
5159276 TTTCCAATAGCACCATAAAATTGTTTATCGATCTGTATGT-TGGGTCCTCAAACTCACTTCCGAA
131 TTTCCAATAGCACCATAAAATTGTTTATCGATTTGTATGTCT-GGTCCTCAAACTCACTTCCAAA
** *
5159340 AGTAATTTGAGATGAATTTCCAGCCACATTTCTTGATGACCCAAGAACATCAGATATCTTACGCA
195 AGCCATTTGAGATGAATTTCCAGCCACATTTCTTGATGACCCAGGAACATCAGATATCTTACGCA
* * * *
5159405 CATCAACAAAGAACTCAATTGCTGAAATATTTGTTAACTTATGTAATCCAATCATGGTTCCAATA
260 CATCAACAAATAACTCAATTACTGAAATATTTGTTAACTCATGTAATCCAATCATGGTTCTAATA
* *
5159470 TCATCATCTTCTTCAACTGGTACTGCAACATATCTAACTGGATTGGGACATACCATGAACATGTA
325 TCATCATCTTCTTCAACTAGTACTGCAACATATCTAACTGGATTGGGACATACCATGAACTTGTA
* * *
5159535 CTTCAAACCATAAATTG-TAGCTGGGTTTTCCTTTCTATCCTCTGCTTCATTTCTAAAAATGTGA
390 CTTCAAACCAT--A--GCT--C-GGATTTTCCTTTTTATCCTCTGCTTCATTTCTACAAATGTGA
*
5159599 TGTCCCTTTTGAACATCATATTTATAGGTCTTTCAGACTAAAAAACAACTCCGACCTCATTTTCC
448 TGTCCCTTTTGAACATCATATTTATAGGTCTTTCAGACTAAAAAACAACTTCGACCTCATTTTCC
* *
5159664 ATAATATGTTCATTATAATGGACAATCGTGAAAAACTTGTTGCTCATTTTCTCTACAAATTCAAA
513 ATAATATATTCATTATAATGGACAATCGTGAAAAACTTATTGCTCATTTTCTCTACAAATTCAAA
* * * *
5159729 AATTTATTTAGGAT-AAAAAATTATGGTACACTATAATCATAAATCGTAAAAATAATATAATAC-
578 AATTTATTTAGAATAAAAAAATTATAGTACACTATGATCATAAATCGTAAAAATGATATAATACA
*
5159792 A-ATAAAAACACTATTAACATAATAACAACCATAAAATTAACAAATATTTATAAAAATAATATTA
643 ATATAAAAACACTATTAACATAACAACAACCATAAAATTAACAAATATTTATAAAAATAATATTA
* * *
5159856 ACATAATAATAAATAGTAAAATACCTCAAATAAAATTTCTTCAAACTTAATTAACATTCGTTTTG
708 ACATAATAATAAATAGTAAAATACTTCAAATAAAATTTCTTCAAACTTAATTCACCTTCGTTTTG
* * *
5159921 CAAAAAAA-A-TAACAAACTATTAGACTAATTTCAAACAAAATAACATAAATTTAAACCAATTTA
773 CAAAAAAATATTAACAAACTATTAGACTAACTTCAAACAAAATAACAGAAAGTTAAACCAATTTA
5159984 CTATATAATACATAC-CAAATTAGAATAACGAAAGAAAAACACACCAATTTTTTTTGAAATGCTC
838 CTATATAATACATACTCAAATTAGAATAACGAAAGAAAAACACACCAA-TTTTTTTGAAATGCTC
5160048 CCTCTGTTAATCT
902 CCTCTGTTAATCT
5160061 TCTTTGC
1 TCTTTGC
5160068 ATTTGTTTCT
Statistics
Matches: 1767, Mismatches: 45, Indels: 38
0.96 0.02 0.02
Matches are distributed among these distances:
909 720 0.41
910 179 0.10
914 33 0.02
915 326 0.18
916 147 0.08
917 132 0.07
918 2 0.00
919 47 0.03
920 1 0.00
921 12 0.01
922 168 0.10
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.34
Consensus pattern (914 bp):
TCTTTGCTTGAATCATCATGGATTTCTCCCCATCGATTTTCAGCATCAACATCAACATTCAATTC
CGAGTTATATATGTTTCTCTCCTCGTACTCTACTTTTGTGGACGTTCCACCGACTTTATTTCCAC
TTTCCAATAGCACCATAAAATTGTTTATCGATTTGTATGTCTGGTCCTCAAACTCACTTCCAAAA
GCCATTTGAGATGAATTTCCAGCCACATTTCTTGATGACCCAGGAACATCAGATATCTTACGCAC
ATCAACAAATAACTCAATTACTGAAATATTTGTTAACTCATGTAATCCAATCATGGTTCTAATAT
CATCATCTTCTTCAACTAGTACTGCAACATATCTAACTGGATTGGGACATACCATGAACTTGTAC
TTCAAACCATAGCTCGGATTTTCCTTTTTATCCTCTGCTTCATTTCTACAAATGTGATGTCCCTT
TTGAACATCATATTTATAGGTCTTTCAGACTAAAAAACAACTTCGACCTCATTTTCCATAATATA
TTCATTATAATGGACAATCGTGAAAAACTTATTGCTCATTTTCTCTACAAATTCAAAAATTTATT
TAGAATAAAAAAATTATAGTACACTATGATCATAAATCGTAAAAATGATATAATACAATATAAAA
ACACTATTAACATAACAACAACCATAAAATTAACAAATATTTATAAAAATAATATTAACATAATA
ATAAATAGTAAAATACTTCAAATAAAATTTCTTCAAACTTAATTCACCTTCGTTTTGCAAAAAAA
TATTAACAAACTATTAGACTAACTTCAAACAAAATAACAGAAAGTTAAACCAATTTACTATATAA
TACATACTCAAATTAGAATAACGAAAGAAAAACACACCAATTTTTTTGAAATGCTCCCTCTGTTA
ATCT
Found at i:5163973 original size:14 final size:14
Alignment explanation
Indices: 5163944--5163989 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
5163934 CATTCGTAAA
5163944 CGTTCGATTATATGTT
1 CGTTCG-TT-TATGTT
5163960 CGTTCGTTTATGTT
1 CGTTCGTTTATGTT
* *
5163974 CGTTCATTTATATT
1 CGTTCGTTTATGTT
5163988 CG
1 CG
5163990 AACAGAGGTC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
14 20 0.71
15 2 0.07
16 6 0.21
ACGTcount: A:0.15, C:0.15, G:0.17, T:0.52
Consensus pattern (14 bp):
CGTTCGTTTATGTT
Found at i:5164275 original size:23 final size:23
Alignment explanation
Indices: 5164243--5164292 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
5164233 GTGTTTATGT
* *
5164243 TGTTCGTTTATTGTGTTTGTTTA
1 TGTTCATTTATTATGTTTGTTTA
5164266 TGTTCATTTATTATGTTTGTTTA
1 TGTTCATTTATTATGTTTGTTTA
5164289 TGTT
1 TGTT
5164293 AGATCGTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.12, C:0.04, G:0.18, T:0.66
Consensus pattern (23 bp):
TGTTCATTTATTATGTTTGTTTA
Found at i:5176541 original size:2 final size:2
Alignment explanation
Indices: 5176534--5176571 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
5176524 TCAATCTACA
5176534 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5176572 TTACGACATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:5176735 original size:83 final size:83
Alignment explanation
Indices: 5176599--5176752 Score: 195
Period size: 83 Copynumber: 1.9 Consensus size: 83
5176589 GACACACGAT
* * * *
5176599 TGTGTGTCATCTTTTCTAATGATGTGTGCTTCAATGACATGTAATGTAAGTCATAAATACGTGTC
1 TGTGTGTCATCTTTTCTAATGATGGGGGCTTCAATGACACGCAATGTAAGTCATAAATACGTGTC
5176664 ATAAATTTATAACACAAA
66 ATAAATTTATAACACAAA
* * * *
5176682 TGTGTGTCATCTTTAT-TTATGATGGGGGCTTCAATGACGCGCAATG-AGCGTCATAAATTCGTG
1 TGTGTGTCATCTTT-TCTAATGATGGGGGCTTCAATGACACGCAATGTA-AGTCATAAATACGTG
*
5176745 TTATAAAT
64 TCATAAAT
5176753 ACGCGTCATA
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
82 1 0.02
83 58 0.97
84 1 0.02
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.37
Consensus pattern (83 bp):
TGTGTGTCATCTTTTCTAATGATGGGGGCTTCAATGACACGCAATGTAAGTCATAAATACGTGTC
ATAAATTTATAACACAAA
Found at i:5185146 original size:16 final size:16
Alignment explanation
Indices: 5185125--5185157 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
5185115 CATGTAATAA
5185125 ACGAACATAAACAAAC
1 ACGAACATAAACAAAC
*
5185141 ACGAACATAAACGAAC
1 ACGAACATAAACAAAC
5185157 A
1 A
5185158 TAATTGAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.61, C:0.24, G:0.09, T:0.06
Consensus pattern (16 bp):
ACGAACATAAACAAAC
Found at i:5185150 original size:26 final size:26
Alignment explanation
Indices: 5185121--5185178 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
5185111 TGTTCATGTA
5185121 ATAAACGAACATAAACAAACACGAAC
1 ATAAACGAACATAAACAAACACGAAC
***
5185147 ATAAACGAACATAATTGAACACGAAC
1 ATAAACGAACATAAACAAACACGAAC
5185173 ATAAAC
1 ATAAAC
5185179 ATTAAAGACC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.59, C:0.21, G:0.09, T:0.12
Consensus pattern (26 bp):
ATAAACGAACATAAACAAACACGAAC
Found at i:5186291 original size:14 final size:14
Alignment explanation
Indices: 5186274--5186313 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
5186264 TGAACATAAG
5186274 CGAACATAACCGAA
1 CGAACATAACCGAA
5186288 CGAACAT-A---AA
1 CGAACATAACCGAA
5186298 CGAACATAACCGAA
1 CGAACATAACCGAA
5186312 CG
1 CG
5186314 TTCACAAACG
Statistics
Matches: 22, Mismatches: 0, Indels: 8
0.73 0.00 0.27
Matches are distributed among these distances:
10 9 0.41
11 1 0.05
13 1 0.05
14 11 0.50
ACGTcount: A:0.50, C:0.28, G:0.15, T:0.07
Consensus pattern (14 bp):
CGAACATAACCGAA
Found at i:5186292 original size:24 final size:24
Alignment explanation
Indices: 5186265--5186313 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
5186255 ATAAATGAAT
*
5186265 GAACATAAGCGAACATAACCGAAC
1 GAACATAAACGAACATAACCGAAC
5186289 GAACATAAACGAACATAACCGAAC
1 GAACATAAACGAACATAACCGAAC
5186313 G
1 G
5186314 TTCACAAACG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.51, C:0.24, G:0.16, T:0.08
Consensus pattern (24 bp):
GAACATAAACGAACATAACCGAAC
Found at i:5186322 original size:24 final size:24
Alignment explanation
Indices: 5186265--5186323 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
5186255 ATAAATGAAT
* *
5186265 GAACATAAGCGAACATAACCGAAC
1 GAACACAAACGAACATAACCGAAC
*
5186289 GAACATAAACGAACATAACCGAAC
1 GAACACAAACGAACATAACCGAAC
**
5186313 GTTCACAAACG
1 GAACACAAACG
5186324 TAAATGAACG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.49, C:0.25, G:0.15, T:0.10
Consensus pattern (24 bp):
GAACACAAACGAACATAACCGAAC
Found at i:5191405 original size:110 final size:110
Alignment explanation
Indices: 5191212--5191432 Score: 433
Period size: 110 Copynumber: 2.0 Consensus size: 110
5191202 ATTGATGCTT
5191212 ATTGGTAGATTTGACTTGTTAAAGAGCTAATTGAGAAATTAGAAACATTGGATGAGTTTAAAAAC
1 ATTGGTAGATTTGACTTGTTAAAGAGCTAATTGAGAAATTAGAAACATTGGATGAGTTTAAAAAC
5191277 AAGATAGAAATTTTGGTGTGATTCTTAGAAGCAAATGATCTTGAG
66 AAGATAGAAATTTTGGTGTGATTCTTAGAAGCAAATGATCTTGAG
*
5191322 ATTGGTAGATTTGACTTGTTAAAGAGCTAATTGAGAGATTAGAAACATTGGATGAGTTTAAAAAC
1 ATTGGTAGATTTGACTTGTTAAAGAGCTAATTGAGAAATTAGAAACATTGGATGAGTTTAAAAAC
5191387 AAGATAGAAATTTTGGTGTGATTCTTAGAAGCAAATGATCTTGAG
66 AAGATAGAAATTTTGGTGTGATTCTTAGAAGCAAATGATCTTGAG
5191432 A
1 A
5191433 GATACTAAAT
Statistics
Matches: 110, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
110 110 1.00
ACGTcount: A:0.38, C:0.06, G:0.23, T:0.33
Consensus pattern (110 bp):
ATTGGTAGATTTGACTTGTTAAAGAGCTAATTGAGAAATTAGAAACATTGGATGAGTTTAAAAAC
AAGATAGAAATTTTGGTGTGATTCTTAGAAGCAAATGATCTTGAG
Found at i:5191688 original size:20 final size:20
Alignment explanation
Indices: 5191663--5191700 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
5191653 TGATTCAATC
5191663 AGTATCGATACCAAAGGGGG
1 AGTATCGATACCAAAGGGGG
*
5191683 AGTATCGATACCGAAGGG
1 AGTATCGATACCAAAGGG
5191701 AAGGTATCGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.16, G:0.34, T:0.16
Consensus pattern (20 bp):
AGTATCGATACCAAAGGGGG
Found at i:5191726 original size:25 final size:26
Alignment explanation
Indices: 5191684--5191737 Score: 92
Period size: 25 Copynumber: 2.1 Consensus size: 26
5191674 CAAAGGGGGA
5191684 GTATCGATACCGAAGGGAAGGTATCG
1 GTATCGATACCGAAGGGAAGGTATCG
*
5191710 GTATCGATACC-ATGGGAAGGTATCG
1 GTATCGATACCGAAGGGAAGGTATCG
5191735 GTA
1 GTA
5191738 CCATAGTATG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 16 0.59
26 11 0.41
ACGTcount: A:0.30, C:0.15, G:0.33, T:0.22
Consensus pattern (26 bp):
GTATCGATACCGAAGGGAAGGTATCG
Found at i:5191991 original size:19 final size:20
Alignment explanation
Indices: 5191946--5191991 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
5191936 TGATTCAATC
**
5191946 AGTATCGATACCAAAGGGGG
1 AGTATCGATACCAAAGGAAG
*
5191966 AGTATCGATACCGAAGGAAG
1 AGTATCGATACCAAAGGAAG
5191986 -GTATCG
1 AGTATCG
5191992 GTATCGATAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.35, C:0.15, G:0.33, T:0.17
Consensus pattern (20 bp):
AGTATCGATACCAAAGGAAG
Found at i:5191995 original size:25 final size:25
Alignment explanation
Indices: 5191967--5192019 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 25
5191957 CAAAGGGGGA
5191967 GTATCGATACCGA-AGGAAGGTATCG
1 GTATCGATACC-ATAGGAAGGTATCG
*
5191992 GTATCGATACCATGGGAAGGTATCG
1 GTATCGATACCATAGGAAGGTATCG
5192017 GTA
1 GTA
5192020 CCATAGTATG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
24 1 0.04
25 25 0.96
ACGTcount: A:0.30, C:0.15, G:0.32, T:0.23
Consensus pattern (25 bp):
GTATCGATACCATAGGAAGGTATCG
Found at i:5192584 original size:44 final size:43
Alignment explanation
Indices: 5192475--5192663 Score: 198
Period size: 45 Copynumber: 4.5 Consensus size: 43
5192465 AATAAAAGAA
*
5192475 TAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCTTAGT
1 TAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCGTAGT
5192518 TGAAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCGTAGCT
1 T--AATGCATATGGGTGCATTATTGGCATGAAAGGATGCCGTAG-T
* *
5192564 TAATGCATATGGGTGCATTATCGGCAT-AAA--A----G-A-A
1 TAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCGTAGT
* * * **
5192598 TAATGTATATGGGTCCATTATTGGAATGAAAGGATGCCAAAGT
1 TAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCGTAGT
5192641 TGAAATGCATATGGGTGCATTAT
1 T--AATGCATATGGGTGCATTAT
5192664 CAACATAAAA
Statistics
Matches: 121, Mismatches: 11, Indels: 26
0.77 0.07 0.16
Matches are distributed among these distances:
34 23 0.19
35 3 0.02
36 1 0.01
37 2 0.02
41 1 0.01
42 1 0.01
43 5 0.04
44 25 0.21
45 58 0.48
46 2 0.02
ACGTcount: A:0.32, C:0.11, G:0.27, T:0.30
Consensus pattern (43 bp):
TAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCGTAGT
Found at i:5193400 original size:37 final size:37
Alignment explanation
Indices: 5193349--5193457 Score: 168
Period size: 37 Copynumber: 2.9 Consensus size: 37
5193339 TCAGTTTTTG
5193349 ATAT-ATATATAGTTTTTGAAAACATTTTGAAAATTT
1 ATATAATATATAGTTTTTGAAAACATTTTGAAAATTT
*
5193385 ATATAATATATAGTTTTTGAAAACATTTTGAAAACTT
1 ATATAATATATAGTTTTTGAAAACATTTTGAAAATTT
*
5193422 ATATAATATATAG-TTTTGAAAATTATTTTGGAAAAT
1 ATATAATATATAGTTTTTGAAAA-CATTTT-GAAAAT
5193458 AAATATTATT
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
36 13 0.19
37 49 0.73
38 5 0.07
ACGTcount: A:0.43, C:0.03, G:0.09, T:0.45
Consensus pattern (37 bp):
ATATAATATATAGTTTTTGAAAACATTTTGAAAATTT
Found at i:5201609 original size:23 final size:23
Alignment explanation
Indices: 5201545--5201609 Score: 85
Period size: 23 Copynumber: 2.8 Consensus size: 23
5201535 CTTATATGGA
* * *
5201545 ACTTCGGTGTATTTCTACATGGC
1 ACTTCGGTGCATTTATACGTGGC
* *
5201568 ACTTCGATGCAATTATACGTGGC
1 ACTTCGGTGCATTTATACGTGGC
5201591 ACTTCGGTGCATTTATACG
1 ACTTCGGTGCATTTATACG
5201610 AGCTGTGGTG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.35
Consensus pattern (23 bp):
ACTTCGGTGCATTTATACGTGGC
Found at i:5209813 original size:20 final size:20
Alignment explanation
Indices: 5209776--5209814 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
5209766 TTTGATTCCA
*
5209776 TTCAACTCAAGGCCATATCG
1 TTCAACTCAAGGCAATATCG
*
5209796 TTCAACTCAAGGGAATATC
1 TTCAACTCAAGGCAATATC
5209815 AAATTTACAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (20 bp):
TTCAACTCAAGGCAATATCG
Found at i:5209950 original size:85 final size:84
Alignment explanation
Indices: 5209796--5210143 Score: 543
Period size: 85 Copynumber: 4.1 Consensus size: 84
5209786 GGCCATATCG
* * *
5209796 TTCAACTCAAGGGAATATCAAATTTACAGCATAGCTCAAGGCGAGAAGGGTTATCTGTCAATGAA
1 TTCAGCTCAAGGGAATATCAAATTTACAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAA-CAA
5209861 AACCTTCGAGTTCGATTACA
65 AACCTTCGAGTTCGATTACA
* *
5209881 TTCAGCTCAAGGGCATATCAAATTTACAGAATAGCTCAAGGCGAGAAGGGCTATCTGTCAACAAG
1 TTCAGCTCAAGGGAATATCAAATTTACAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAACAA-
*
5209946 AACCTTCGAGTTCGATTATA
65 AACCTTCGAGTTCGATTACA
* *
5209966 TTCAGCTCAAGGGCATATCAAATTTACAGCATAGCTCAAGGCGATAAGGGCTATCTGTCAACAAA
1 TTCAGCTCAAGGGAATATCAAATTTACAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAACAAA
* *
5210031 CACCTTCGAGTTTGATTCCA
66 -ACCTTCGAGTTCGATTACA
* *
5210051 TTCAACTCAAGGGAATATCAAATTTACAGCATAGCTCAAGGCGAGAAGGGTTATCTGTCAACAAA
1 TTCAGCTCAAGGGAATATCAAATTTACAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAAC-AA
*
5210116 AACCTTCGAGTTCGATTCCA
65 AACCTTCGAGTTCGATTACA
5210136 TTCAGCTC
1 TTCAGCTC
5210144 GATGACAGCG
Statistics
Matches: 243, Mismatches: 17, Indels: 6
0.91 0.06 0.02
Matches are distributed among these distances:
84 3 0.01
85 237 0.98
86 3 0.01
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.26
Consensus pattern (84 bp):
TTCAGCTCAAGGGAATATCAAATTTACAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAACAAA
ACCTTCGAGTTCGATTACA
Found at i:5210783 original size:18 final size:18
Alignment explanation
Indices: 5210743--5210784 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
5210733 ATTTTTTGTT
* *
5210743 TTTTTTTAAAACATATAG
1 TTTTTTTAAAAAAAATAG
5210761 TTTTTTTAAAAAAAATCAG
1 TTTTTTTAAAAAAAAT-AG
5210780 TTTTT
1 TTTTT
5210785 GAAATATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.52
Consensus pattern (18 bp):
TTTTTTTAAAAAAAATAG
Found at i:5210831 original size:26 final size:27
Alignment explanation
Indices: 5210778--5210848 Score: 99
Period size: 26 Copynumber: 2.6 Consensus size: 27
5210768 AAAAAAAATC
*
5210778 AGTTTTTGAAATATATATATATAATATAT
1 AGTTTTTGAAACAT-T-TATATAATATAT
5210807 AGTTTTTGAAA-ATTTATATAATATAT
1 AGTTTTTGAAACATTTATATAATATAT
*
5210833 AGTTTATGAAACATTT
1 AGTTTTTGAAACATTT
5210849 TGAAAACTTA
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
26 22 0.55
27 5 0.12
28 2 0.05
29 11 0.28
ACGTcount: A:0.42, C:0.01, G:0.08, T:0.48
Consensus pattern (27 bp):
AGTTTTTGAAACATTTATATAATATAT
Found at i:5210853 original size:36 final size:35
Alignment explanation
Indices: 5210810--5210878 Score: 120
Period size: 36 Copynumber: 1.9 Consensus size: 35
5210800 AATATATAGT
*
5210810 TTTTGAAAATTTATATAATATATAGTTTATGAAACA
1 TTTTGAAAACTTATATAATATATAGTTT-TGAAACA
5210846 TTTTGAAAACTTATATAATATATAGTTTTGAAA
1 TTTTGAAAACTTATATAATATATAGTTTTGAAA
5210879 ATTATTTTGG
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 5 0.16
36 27 0.84
ACGTcount: A:0.43, C:0.03, G:0.09, T:0.45
Consensus pattern (35 bp):
TTTTGAAAACTTATATAATATATAGTTTTGAAACA
Found at i:5210892 original size:38 final size:35
Alignment explanation
Indices: 5210810--5210905 Score: 115
Period size: 36 Copynumber: 2.7 Consensus size: 35
5210800 AATATATAGT
5210810 TTTTGAAAATTTATATAATATATAGTTTATGAAACA
1 TTTTGAAAA-TTATATAATATATAGTTTATGAAACA
*
5210846 TTTTGAAAACTTATATAATATATAGTTT-TGAAAATTA
1 TTTTGAAAA-TTATATAATATATAGTTTATG-AAA-CA
*
5210883 TTTTGGAAAA-TAAATAATATATA
1 TTTT-GAAAATTATATAATATATA
5210906 TATATATAAT
Statistics
Matches: 54, Mismatches: 3, Indels: 6
0.86 0.05 0.10
Matches are distributed among these distances:
35 2 0.04
36 42 0.78
37 5 0.09
38 5 0.09
ACGTcount: A:0.46, C:0.02, G:0.08, T:0.44
Consensus pattern (35 bp):
TTTTGAAAATTATATAATATATAGTTTATGAAACA
Found at i:5210949 original size:6 final size:6
Alignment explanation
Indices: 5210938--5211013 Score: 93
Period size: 6 Copynumber: 12.3 Consensus size: 6
5210928 TAAAATAATA
*
5210938 TTATTT TTATTT TTATTT TTATTT ATTATTT TTATTT ATTATTT TTATTA
1 TTATTT TTATTT TTATTT TTATTT -TTATTT TTATTT -TTATTT TTATTT
5210988 TTACTTAT TTA-TT TTA-TT TTATTT TT
1 TTA-TT-T TTATTT TTATTT TTATTT TT
5211014 TTAAACATGT
Statistics
Matches: 63, Mismatches: 2, Indels: 10
0.84 0.03 0.13
Matches are distributed among these distances:
5 9 0.14
6 37 0.59
7 14 0.22
8 3 0.05
ACGTcount: A:0.21, C:0.01, G:0.00, T:0.78
Consensus pattern (6 bp):
TTATTT
Done.