Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008724.1 Hibiscus syriacus cultivar Beakdansim tig00111783_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5289199
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 6 of 23
Found at i:1361164 original size:16 final size:16
Alignment explanation
Indices: 1361145--1361191 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 16
1361135 TATTTATTTG
1361145 AAATAATATTATTTTT
1 AAATAATATTATTTTT
*
1361161 AAATTATATATTTAATTTT
1 AAA-TA-ATA-TTATTTTT
1361180 AAATAATATTAT
1 AAATAATATTAT
1361192 ACGGAACCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
16 6 0.23
17 5 0.19
18 5 0.19
19 10 0.38
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
AAATAATATTATTTTT
Found at i:1361327 original size:23 final size:23
Alignment explanation
Indices: 1361262--1361327 Score: 73
Period size: 23 Copynumber: 2.8 Consensus size: 23
1361252 TAAAATTAAA
1361262 TAAATAACTTAAAGTAATATT-ATTT
1 TAAATAA-TTAAA-TAAT-TTGATTT
*
1361287 TAAATAATTAATTAATTTGATTT
1 TAAATAATTAAATAATTTGATTT
1361310 TAAA-AATTAAATATATTT
1 TAAATAATTAAATA-ATTT
1361328 TTATAATATT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
22 10 0.27
23 16 0.43
24 4 0.11
25 7 0.19
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (23 bp):
TAAATAATTAAATAATTTGATTT
Found at i:1362140 original size:41 final size:41
Alignment explanation
Indices: 1362095--1362173 Score: 140
Period size: 41 Copynumber: 1.9 Consensus size: 41
1362085 CCAATCGTAG
* *
1362095 AAGTTTAACAGAAAAGCTAGTTATTAGCCTCAAAAGATTGA
1 AAGTTGAACAGAAAAGCCAGTTATTAGCCTCAAAAGATTGA
1362136 AAGTTGAACAGAAAAGCCAGTTATTAGCCTCAAAAGAT
1 AAGTTGAACAGAAAAGCCAGTTATTAGCCTCAAAAGAT
1362174 AGACATTCCA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.44, C:0.14, G:0.18, T:0.24
Consensus pattern (41 bp):
AAGTTGAACAGAAAAGCCAGTTATTAGCCTCAAAAGATTGA
Found at i:1363315 original size:2 final size:2
Alignment explanation
Indices: 1363310--1363344 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
1363300 GAAAAAAATA
1363310 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1363345 CTATACCACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1363624 original size:23 final size:23
Alignment explanation
Indices: 1363598--1363645 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
1363588 ATAAAATACA
*
1363598 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
** *
1363621 ATAATGTAATAGGTAGTGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
1363644 AT
1 AT
1363646 TTACCTATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.35
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:1364097 original size:23 final size:23
Alignment explanation
Indices: 1364071--1364133 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
1364061 ATATAACCAC
1364071 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
1364094 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
1364117 TACCTATTACATCATAT
1 TACCTATTACATTATAT
1364134 GTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:1364536 original size:25 final size:25
Alignment explanation
Indices: 1364479--1364544 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
1364469 CACTCAAAAG
*
1364479 ATGTATATACCTAAATATGTAGTTA
1 ATGTACATACCTAAATATGTAGTTA
***
1364504 ACAAACATACCTAAATATGTAGTTA
1 ATGTACATACCTAAATATGTAGTTA
*
1364529 TTGTACATACCTAAAT
1 ATGTACATACCTAAAT
1364545 TTAATGATAA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.42, C:0.14, G:0.09, T:0.35
Consensus pattern (25 bp):
ATGTACATACCTAAATATGTAGTTA
Found at i:1365403 original size:183 final size:183
Alignment explanation
Indices: 1364845--1365368 Score: 1003
Period size: 183 Copynumber: 2.9 Consensus size: 183
1364835 TCTTCTGTTC
* * *
1364845 ACATTATAAATCTGGGTTCCGATGTGTAAATGTCGATACTTTTTTAAATCGTATCGACACATTTT
1 ACATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACATTTT
1364910 TCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTA
66 TCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTA
1364975 TTCGCGCATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATT
131 TTCGCGCATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATT
1365028 ACATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACATTTT
1 ACATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACATTTT
1365093 TCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTA
66 TCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTA
1365158 TTCGCGCATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATT
131 TTCGCGCATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATT
1365211 ACATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACATTTT
1 ACATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACATTTT
* *
1365276 TCTTCCAATATGAACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTATAGACCTA
66 TCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTA
1365341 TTCGCGCATAAAACCGGTATATTTATAC
131 TTCGCGCATAAAACCGGTATATTTATAC
1365369 TGATAGCATT
Statistics
Matches: 336, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
183 336 1.00
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.35
Consensus pattern (183 bp):
ACATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACATTTT
TCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTA
TTCGCGCATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATT
Found at i:1366726 original size:20 final size:18
Alignment explanation
Indices: 1366672--1366717 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 18
1366662 TCCGGTATCA
1366672 TTTTACCGGTTTATCATT
1 TTTTACCGGTTTATCATT
*
1366690 TTGATACCGGTTTTATCATAT
1 TT-TTACCGG-TTTATCAT-T
1366711 TTTTACC
1 TTTTACC
1366718 TGTTATATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 2 0.09
19 6 0.26
20 12 0.52
21 3 0.13
ACGTcount: A:0.20, C:0.17, G:0.11, T:0.52
Consensus pattern (18 bp):
TTTTACCGGTTTATCATT
Found at i:1366875 original size:20 final size:20
Alignment explanation
Indices: 1366850--1366888 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
1366840 CGGTAACGTT
1366850 TTACCGGTTTTATCATTTTG
1 TTACCGGTTTTATCATTTTG
1366870 TTACCGGTTTTATCATTTT
1 TTACCGGTTTTATCATTTT
1366889 TACCTGGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.15, C:0.15, G:0.13, T:0.56
Consensus pattern (20 bp):
TTACCGGTTTTATCATTTTG
Found at i:1366944 original size:176 final size:175
Alignment explanation
Indices: 1366639--1367103 Score: 603
Period size: 176 Copynumber: 2.6 Consensus size: 175
1366629 CGTACTTACG
* *
1366639 AAAGTATCGACACTTTCAATATATCCGGTATCATTTTACCGG-TTTATCATTTTGATACCGGTTT
1 AAAGTATCGACACTTT-AA-ATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* *
1366703 TATCATATTTTTACCTGTTATATCGTTGTGGATCGATATATTTTTTTAAAGTATCGACATTATAG
64 TATC--ATTTTTACCTGTTATATCGTT-TGGATCGATACATTTTTTAAAAGTATCGACATTATAG
* *
1366768 GCGCTATAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATA-T
126 GAGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
* *
1366817 AAAGTATCGACACTTTTAATATCCGGTAACGTTTTACCGGTTTTATCATTTTGTTACCGGTTTTA
1 AAAGTATCGACACTTTAAATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTTTA
* * *
1366882 TCATTTTTACCTGGTATATAGTTTGGATCGATACATTTTTTAAAAGTATCGACACTTTATAGGAT
66 TCATTTTTACCTGTTATATCGTTTGGATCGATACATTTTTTAAAAGTATCGACA--TTATAGGAG
* * *
1366947 TTAAAATTGCTTCTCTTTTAAATTCACGAAGTGTCGATCCTTATATT
129 CTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
* * * * *
1366994 AAAGTACCGACACTTTAAATGTATCCGGTAGCGCTTGACCGGTTTTATAATTTCT-ATACCGGTT
1 AAAGTATCGACACTTTAAA--TATCCGGTAACGTTTTACCGGTTTTATCATTT-TGATACCGGTT
* *
1367058 TTGTCATAGTTTTACCTGTTATATCGTTTTGGATCGACACATTTTT
63 TTATCAT--TTTTACCTGTTATATCG-TTTGGATCGATACATTTTT
1367104 AATTTGGATC
Statistics
Matches: 252, Mismatches: 25, Indels: 16
0.86 0.09 0.05
Matches are distributed among these distances:
174 29 0.12
175 19 0.08
176 68 0.27
177 44 0.17
178 16 0.06
179 42 0.17
180 1 0.00
181 15 0.06
182 18 0.07
ACGTcount: A:0.26, C:0.17, G:0.15, T:0.43
Consensus pattern (175 bp):
AAAGTATCGACACTTTAAATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTTTA
TCATTTTTACCTGTTATATCGTTTGGATCGATACATTTTTTAAAAGTATCGACATTATAGGAGCT
AAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
Found at i:1367556 original size:17 final size:17
Alignment explanation
Indices: 1367534--1367566 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
1367524 AGGATAGATA
1367534 TTTACCGATAACCAAAG
1 TTTACCGATAACCAAAG
*
1367551 TTTACCGATTACCAAA
1 TTTACCGATAACCAAA
1367567 TATTTTAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.24, G:0.09, T:0.27
Consensus pattern (17 bp):
TTTACCGATAACCAAAG
Found at i:1369873 original size:13 final size:13
Alignment explanation
Indices: 1369845--1369878 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
1369835 TTTAATTGCA
1369845 AAAATTGAAAAATT
1 AAAATT-AAAAATT
*
1369859 AAAATTAAAATTT
1 AAAATTAAAAATT
1369872 AAAATTA
1 AAAATTA
1369879 CCCGAATCGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (13 bp):
AAAATTAAAAATT
Found at i:1371837 original size:2 final size:2
Alignment explanation
Indices: 1371830--1371887 Score: 107
Period size: 2 Copynumber: 29.0 Consensus size: 2
1371820 TAAAACAATA
*
1371830 AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1371872 AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT
1371888 GTGTGTGTGT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1372710 original size:106 final size:106
Alignment explanation
Indices: 1372524--1373826 Score: 2102
Period size: 106 Copynumber: 12.4 Consensus size: 106
1372514 GCATTGTTCC
* * * * * *
1372524 GAGTCTAATATCATCCGTCGTGAAGTTGAAATTGGCTCTGGAATCGGGAAATTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
* * * * *
1372589 CCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGCCTC
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
1372630 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAATTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
* * *
1372695 CCAGCGGTCCATTCGTCGTGAAGTTGAACTTGCGTTATCTC
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
1372736 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
* *
1372801 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTC
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
1372842 GAGTCCAATATCCTTCGCTATGAAGTTGAAATTGGCTCTGAAATTGGG-AA--GTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
*
1372904 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
1372945 GAGTCCAATATTCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAA-TGTTTATTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
*
1373009 CCAACGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
1373050 GAGTCCAATATCCTTCGTTGTGAAGTTCAAATTGGCTCTGAAATTGAGAGA-TGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
1373114 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
1373155 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATTGGGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
* *
1373220 CCAGCGGTCCCTTCGTTGTGAAGTTGAACTTGAGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
1373261 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
*
1373326 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTT-TCTC
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
1373366 GAGTCC-A-ATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
1373429 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
1373470 GAGTCTAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
1373535 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
1373576 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTTTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
*
1373641 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
1373682 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATT-AGAAATTTGTTTATTGATA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAA-TTGTTTGTTGACA
1373746 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
65 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
1373788 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCT
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCT
1373827 CGAGCAAAAT
Statistics
Matches: 1128, Mismatches: 62, Indels: 14
0.94 0.05 0.01
Matches are distributed among these distances:
103 188 0.17
104 11 0.01
105 210 0.19
106 719 0.64
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.34
Consensus pattern (106 bp):
GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:1373527 original size:315 final size:318
Alignment explanation
Indices: 1372524--1373826 Score: 2147
Period size: 315 Copynumber: 4.1 Consensus size: 318
1372514 GCATTGTTCC
* * * * * *
1372524 GAGTCTAATATCATCCGTCGTGAAGTTGAAATTGGCTCTGGAATCGGGAAATTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
* * * * *
1372589 CCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGCCTCGAGTCCAATATCCTTCGCTGTGAA
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
* * * *
1372654 GTTGAAATTGGCTCCGAAATTGGGAAATTGTTTGTTGACAACCAGCGGTCCATTCGTCGTGAAGT
131 GTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGT
* *
1372719 TGAACTTGCGTTATCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGG
196 TGAACTTGCGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAG
* *
1372784 AAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTC
261 AAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
1372842 GAGTCCAATATCCTTCGCTATGAAGTTGAAATTGGCTCTGAAATTGGG-AA--GTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
*
1372904 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTGGAGTCCAATATTCTTCGTTGTGAA
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
* * *
1372969 GTTGAAATTGGCTCTGAAATTGAGAA-ATGTTTATTGACAACCAACGGTCCCTTCGTCGTGAAGT
131 GTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGT
* * *
1373033 TGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTCAAATTGGCTCTGAAATTGAG
196 TGAACTTGCGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAG
*
1373098 -AGATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
261 AAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
1373155 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATTGGGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
* *
1373220 CCAGCGGTCCCTTCGTTGTGAAGTTGAACTTGAGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
1373285 GTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGT
131 GTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGT
*
1373350 TGAACTTGCGTT-TCTCGAGTCC-A-ATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAG
196 TGAACTTGCGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAG
1373412 AAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
261 AAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
1373470 GAGTCTAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
*
1373535 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
* *
1373600 GTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTTTTGACAACCAGCGGTCCCTTCGTCGTGAAGT
131 GTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGT
*
1373665 TGAACTTGCGTTGTCTTGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATT-AG
196 TGAACTTGCGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAG
* * *
1373729 AAATTTGTTTATTGATAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
261 -AAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
1373788 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCT
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCT
1373827 CGAGCAAAAT
Statistics
Matches: 921, Mismatches: 55, Indels: 18
0.93 0.06 0.02
Matches are distributed among these distances:
313 99 0.11
314 133 0.14
315 352 0.38
316 118 0.13
317 52 0.06
318 167 0.18
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.34
Consensus pattern (318 bp):
GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
GTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGT
TGAACTTGCGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAG
AAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:1377380 original size:2 final size:2
Alignment explanation
Indices: 1377373--1377441 Score: 122
Period size: 2 Copynumber: 35.0 Consensus size: 2
1377363 TAAAACAATA
*
1377373 AT AT AT AT AT GT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1377414 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1377442 GTGTGTGTGT
Statistics
Matches: 64, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
1 1 0.02
2 63 0.98
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1378237 original size:121 final size:121
Alignment explanation
Indices: 1378023--1378610 Score: 804
Period size: 121 Copynumber: 4.8 Consensus size: 121
1378013 CGATTTGTTA
1378023 GGCACGATATCCTTCGTCGTGAAGTTGAAATCGTGGATGGCTCATTCATTGTGAAGTTGAGCTTT
1 GGCACGATATCCTTCGTCGTGAAGTTGAAATCGTGGATGGCTCATTCATTGTGAAGTTGAGCTTT
* * *
1378088 GAATTGGATATCCTTCGCCGTGATGTTGAAATCCAAGGGTTGCATTGCTTCTTGTG
66 GAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAAGGGTTGCATTGCTGCTTGTG
* * *
1378144 GGCACAATATCCTTCGTCATGAAGTTGAAAAT-GTGGATGGCTCCTTCATTGTGAAGTTGAGCTT
1 GGCACGATATCCTTCGTCGTGAAGTTG-AAATCGTGGATGGCTCATTCATTGTGAAGTTGAGCTT
* * *
1378208 TGAGTTGGATATTCTTCGTCGTGAAGTTGAAATCAAAGGGTTGCATTGCTGCTTGTG
65 TGAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAAGGGTTGCATTGCTGCTTGTG
* * *
1378265 GGCACGATATTCTTCGTCGTGAAGTTGAAATCGTGGATGACTCATTCATTGTGAAGTTGAGTTTT
1 GGCACGATATCCTTCGTCGTGAAGTTGAAATCGTGGATGGCTCATTCATTGTGAAGTTGAGCTTT
* *
1378330 GAATTGGATATCTTTCATCGTGAAGTTGAAATCCAAGGGTTGCATTGCTGCTTGTG
66 GAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAAGGGTTGCATTGCTGCTTGTG
* * * * * * *
1378386 GGCACGCTATCATTCGCCGTGAAGTTGAAATCGTGGATGCCCCATTCGTTGTGAAGTTGAGCCTT
1 GGCACGATATCCTTCGTCGTGAAGTTGAAATCGTGGATGGCTCATTCATTGTGAAGTTGAGCTTT
* *** * * *
1378451 GAATTGGATATCCTTCGTCGTTAAGTTGAAATCTAATCTAA-AAATGGA-TGTTGCTGGTG
66 GAATTGGATATCCTTCGTCGTGAAGTTGAAATC----C-AAGGGTTGCATTGCTGCTTGTG
* * * *
1378510 GGCACGATATCCTTCATCGTGAAGTTGAAATCGTGGATGACTCATTCGTTGTGAAGTTGAGTTTT
1 GGCACGATATCCTTCGTCGTGAAGTTGAAATCGTGGATGGCTCATTCATTGTGAAGTTGAGCTTT
*
1378575 GAATTGGATATCCTTTGTCGTGAAGTTGAAATCCAA
66 GAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAA
1378611 TGGTGTAATT
Statistics
Matches: 412, Mismatches: 48, Indels: 16
0.87 0.10 0.03
Matches are distributed among these distances:
119 2 0.00
120 5 0.01
121 298 0.72
122 4 0.01
124 97 0.24
125 4 0.01
126 2 0.00
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.35
Consensus pattern (121 bp):
GGCACGATATCCTTCGTCGTGAAGTTGAAATCGTGGATGGCTCATTCATTGTGAAGTTGAGCTTT
GAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAAGGGTTGCATTGCTGCTTGTG
Found at i:1378731 original size:64 final size:63
Alignment explanation
Indices: 1378630--1378862 Score: 295
Period size: 64 Copynumber: 3.6 Consensus size: 63
1378620 TTGCATTGTT
* *
1378630 TCGAGTCCAATATCTTTTGAAGTGGAGTTGAAATTGACTCTGAATGAAATTGGAAAGTTGTTTG
1 TCGAGTCTAATATCTTTTGAAGT-GAGTTGAAATTGACTCTGAATGAAACTGGAAAGTTGTTTG
1378694 TCGAGTCTAATATCTTTTGAAGTAGAGTTGAAATTGACTCTGAATGAAACTGGAAAGTTGTTTG
1 TCGAGTCTAATATCTTTTGAAGT-GAGTTGAAATTGACTCTGAATGAAACTGGAAAGTTGTTTG
* * * ** * *
1378758 TTGAGTCTAATATCCTTCGCTGTGAAATTGAAATTGACTTTGAATGAAACTGGAAAGTTGTTTG
1 TCGAGTCTAATATCTTTTGAAGTG-AGTTGAAATTGACTCTGAATGAAACTGGAAAGTTGTTTG
* * * ** *
1378822 TTGAGTCTAATATCATTCGTTGTGAAGTTGAAATCGACTCT
1 TCGAGTCTAATATCTTTTGAAGTG-AGTTGAAATTGACTCT
1378863 AAAAGCTGCA
Statistics
Matches: 153, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
63 1 0.01
64 152 0.99
ACGTcount: A:0.30, C:0.11, G:0.23, T:0.37
Consensus pattern (63 bp):
TCGAGTCTAATATCTTTTGAAGTGAGTTGAAATTGACTCTGAATGAAACTGGAAAGTTGTTTG
Found at i:1382475 original size:14 final size:14
Alignment explanation
Indices: 1382456--1382489 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
1382446 TTTAAATGCA
1382456 AAAATTAAAAATTG
1 AAAATTAAAAATTG
*
1382470 AAAATT-AAAATTT
1 AAAATTAAAAATTG
1382483 AAAATTA
1 AAAATTA
1382490 CCCGATTCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (14 bp):
AAAATTAAAAATTG
Found at i:1382607 original size:13 final size:13
Alignment explanation
Indices: 1382589--1382613 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1382579 ATCAAAAGAA
1382589 AAAAACATAAAAT
1 AAAAACATAAAAT
1382602 AAAAACATAAAA
1 AAAAACATAAAA
1382614 AAATATAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.08, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAACATAAAAT
Found at i:1386797 original size:2 final size:2
Alignment explanation
Indices: 1386790--1386821 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
1386780 TTACACATAA
1386790 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1386822 GTCTAATTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1388877 original size:19 final size:18
Alignment explanation
Indices: 1388853--1388911 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 18
1388843 AACAATACTA
1388853 ATTATTTATTTCAAATAAT
1 ATTATTTATTT-AAATAAT
*
1388872 ATTA-TT-TTTAAATTAT
1 ATTATTTATTTAAATAAT
1388888 A-TATTTAATTTTAAATAAT
1 ATTATTT-A-TTTAAATAAT
1388907 ATTAT
1 ATTAT
1388912 ACGAACCAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
15 2 0.06
16 9 0.27
17 3 0.09
18 2 0.06
19 14 0.42
20 3 0.09
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (18 bp):
ATTATTTATTTAAATAAT
Found at i:1393002 original size:34 final size:34
Alignment explanation
Indices: 1392959--1393029 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
1392949 CATATGCACG
1392959 AGTTGAAATTCAATTAAAACTAACAAAACCATCA
1 AGTTGAAATTCAATTAAAACTAACAAAACCATCA
*
1392993 AGTTGAAATTCAATTAAAACTAACATAACCATCA
1 AGTTGAAATTCAATTAAAACTAACAAAACCATCA
1393027 AGT
1 AGT
1393030 GGTCTAAGTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.51, C:0.17, G:0.07, T:0.25
Consensus pattern (34 bp):
AGTTGAAATTCAATTAAAACTAACAAAACCATCA
Found at i:1400858 original size:46 final size:46
Alignment explanation
Indices: 1400787--1401003 Score: 314
Period size: 46 Copynumber: 4.8 Consensus size: 46
1400777 GATAAAATCT
* * *
1400787 CTTACCATTT-ATCCCATAAGCTCGTAAGCTTATTTTACCAAAACA
1 CTTACCATTTAAACCCATAAGCTCGTAAGCTTATTTTACCAATATA
* *
1400832 CTTATCATTTAAACCCATAAGCTCGTAAGCTAATTTTACCAATATA
1 CTTACCATTTAAACCCATAAGCTCGTAAGCTTATTTTACCAATATA
*
1400878 CTTACCATTTAATCCCATAAGCTCGTAAGCTTATTTTACCAATATA
1 CTTACCATTTAAACCCATAAGCTCGTAAGCTTATTTTACCAATATA
* * *
1400924 CTTACCATTTAATCCCATAAGCTCATAAGCTTGTTTTACCAATATA
1 CTTACCATTTAAACCCATAAGCTCGTAAGCTTATTTTACCAATATA
* *
1400970 CTTGCCA-TTATA-CCATAAGCTCGTAAGCTTATTT
1 CTTACCATTTAAACCCATAAGCTCGTAAGCTTATTT
1401004 GCATGGTTAC
Statistics
Matches: 156, Mismatches: 15, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
44 20 0.13
45 12 0.08
46 124 0.79
ACGTcount: A:0.33, C:0.24, G:0.07, T:0.36
Consensus pattern (46 bp):
CTTACCATTTAAACCCATAAGCTCGTAAGCTTATTTTACCAATATA
Found at i:1405689 original size:54 final size:54
Alignment explanation
Indices: 1405641--1406104 Score: 718
Period size: 54 Copynumber: 8.6 Consensus size: 54
1405631 CATAGTGTTG
* *
1405641 ATACAGTAATTCACAAACTCATTATGAATTACGT-GGCTTGCACACATAGTGCCA
1 ATACGGTAATTCACAAACTCATTATGAATTACTTAGG-TTGCACACATAGTGCCA
* *
1405695 ATACGGTAATTCACAAACTCATTATGAATTACTTAGGTTACACACATAGTTCCA
1 ATACGGTAATTCACAAACTCATTATGAATTACTTAGGTTGCACACATAGTGCCA
*
1405749 ATACGGTAATTCACAAACTAATTATGAATTACTTAGGTTGCACACATAGTGCCA
1 ATACGGTAATTCACAAACTCATTATGAATTACTTAGGTTGCACACATAGTGCCA
*
1405803 ATACGGTAATTCACAAACTAATTATGAATTACTTAGGTTGCAC-C-TAATGTGCCA
1 ATACGGTAATTCACAAACTCATTATGAATTACTTAGGTTGCACACAT-A-GTGCCA
* * * *
1405857 ATACGATAATTCAAAAACTCATTATGAATTACTTAGGTTGCACATATAGTGCTA
1 ATACGGTAATTCACAAACTCATTATGAATTACTTAGGTTGCACACATAGTGCCA
* * * *
1405911 ATATGGTAATTCACAAACTAATTATGAATTATTTAGGTTGCACACATAATGCCA
1 ATACGGTAATTCACAAACTCATTATGAATTACTTAGGTTGCACACATAGTGCCA
*
1405965 ATACGGTAATTCACAAACTCATTATGAATTACTTAGATTGCACACATAGTGCCA
1 ATACGGTAATTCACAAACTCATTATGAATTACTTAGGTTGCACACATAGTGCCA
*
1406019 ATACGGTAATTAACAAACTCATTATGAATTACTTAGGTTGCACACATAGTGCCA
1 ATACGGTAATTCACAAACTCATTATGAATTACTTAGGTTGCACACATAGTGCCA
* *
1406073 ATACGGTAATTCATAAACTAATTATGAATTAC
1 ATACGGTAATTCACAAACTCATTATGAATTAC
1406105 GACTAATGAT
Statistics
Matches: 375, Mismatches: 30, Indels: 10
0.90 0.07 0.02
Matches are distributed among these distances:
52 1 0.00
53 2 0.01
54 368 0.98
55 3 0.01
56 1 0.00
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (54 bp):
ATACGGTAATTCACAAACTCATTATGAATTACTTAGGTTGCACACATAGTGCCA
Found at i:1406111 original size:17 final size:17
Alignment explanation
Indices: 1406089--1406121 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
1406079 TAATTCATAA
*
1406089 ACTAATTATGAATTACG
1 ACTAATGATGAATTACG
1406106 ACTAATGATGAATTAC
1 ACTAATGATGAATTAC
1406122 TTAGGTTGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.33
Consensus pattern (17 bp):
ACTAATGATGAATTACG
Found at i:1408090 original size:81 final size:81
Alignment explanation
Indices: 1407955--1408532 Score: 904
Period size: 81 Copynumber: 7.1 Consensus size: 81
1407945 TGTTAATCAT
* * *
1407955 TTAATATTTTACTCAAAGGCATTTAGCCTTTCATCTAACTTGCAATTTTGGCACCTTTCTTCCAA
1 TTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCTAACTTGCAATATTGGCACCTTTCTGCCAA
1408020 ATGCACAACTAGGCAA
66 ATGCACAACTAGGCAA
* *
1408036 TTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCCAACTTGCAATATTGGCACCTTTTTGCCAA
1 TTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCTAACTTGCAATATTGGCACCTTTCTGCCAA
*
1408101 ATGCACAGCTAGGCAA
66 ATGCACAACTAGGCAA
* * *
1408117 TTAATTTTTTACTCAAAGGCATTTAGCCTTTCATCTAACTTGCAATATTGACACCTTTATGCCAA
1 TTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCTAACTTGCAATATTGGCACCTTTCTGCCAA
*
1408182 ATGCACAACTAGGTAA
66 ATGCACAACTAGGCAA
* * * *
1408198 TTAATCGTTTACTCAAAGGCATTTAGCCTTTCATCTAACATGCAATATTGGTACCTTTATGCCAA
1 TTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCTAACTTGCAATATTGGCACCTTTCTGCCAA
*
1408263 ATGCACAACTAGGTAA
66 ATGCACAACTAGGCAA
* * * **
1408279 TTAATATTTTACTCAAAGACATTTAGCGTTTCATCTAACTTGCAATATTGGCATATTTCTGCCAA
1 TTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCTAACTTGCAATATTGGCACCTTTCTGCCAA
*
1408344 ATGTACAACTAGGCAA
66 ATGCACAACTAGGCAA
* * * * *
1408360 TTAATCTTTTACTCAAAGACATTTATCCTTTCATCTAACTTGCAATATTGACACCTTTTTTCCAA
1 TTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCTAACTTGCAATATTGGCACCTTTCTGCCAA
*
1408425 ATGCACAACTAGACAA
66 ATGCACAACTAGGCAA
*
1408441 TTAATCTTTTACTCAAAGGCATTTACCCTTTCATCTAACTTGCAATATTGGCACCTTTCTGCCAA
1 TTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCTAACTTGCAATATTGGCACCTTTCTGCCAA
1408506 ATGCACAACTAGGCAA
66 ATGCACAACTAGGCAA
1408522 TTAATCTTTTA
1 TTAATCTTTTA
1408533 TTTTAAGAAC
Statistics
Matches: 453, Mismatches: 44, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 453 1.00
ACGTcount: A:0.31, C:0.22, G:0.11, T:0.35
Consensus pattern (81 bp):
TTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCTAACTTGCAATATTGGCACCTTTCTGCCAA
ATGCACAACTAGGCAA
Found at i:1435440 original size:17 final size:17
Alignment explanation
Indices: 1435418--1435452 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
1435408 GAATTTTCTG
1435418 CATTTCATACATTCATT
1 CATTTCATACATTCATT
*
1435435 CATTTCATATATTCATT
1 CATTTCATACATTCATT
1435452 C
1 C
1435453 CCACACCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.23, G:0.00, T:0.49
Consensus pattern (17 bp):
CATTTCATACATTCATT
Found at i:1436401 original size:2 final size:2
Alignment explanation
Indices: 1436394--1436430 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
1436384 GAGAAATCCA
1436394 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1436431 AAGAGAAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1438195 original size:36 final size:37
Alignment explanation
Indices: 1438149--1438221 Score: 103
Period size: 37 Copynumber: 2.0 Consensus size: 37
1438139 CATTTTATAA
*
1438149 TTTAATAAT-AATTTTATTTGCAATAAAAAAAGTAAT
1 TTTAATAATAAATTTTATTTGCAATAAAAAAACTAAT
* * *
1438185 TTTATTAATAAATTTTATTTTCAGTAAAAAAACTAAT
1 TTTAATAATAAATTTTATTTGCAATAAAAAAACTAAT
1438222 AAGATAAGAT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
36 8 0.25
37 24 0.75
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (37 bp):
TTTAATAATAAATTTTATTTGCAATAAAAAAACTAAT
Found at i:1438692 original size:30 final size:30
Alignment explanation
Indices: 1438658--1438719 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
1438648 ATCACTGAAT
* * *
1438658 TTTAGATAGAATACCAATTTGACTCTAAAC
1 TTTAGATACAATACCAATTTCACCCTAAAC
* *
1438688 TTTAGATACAATATCATTTTCACCCTAAAC
1 TTTAGATACAATACCAATTTCACCCTAAAC
1438718 TT
1 TT
1438720 CATATAAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.37, C:0.19, G:0.06, T:0.37
Consensus pattern (30 bp):
TTTAGATACAATACCAATTTCACCCTAAAC
Found at i:1446186 original size:244 final size:241
Alignment explanation
Indices: 1445747--1446636 Score: 949
Period size: 244 Copynumber: 3.8 Consensus size: 241
1445737 CAGCATACTA
* * *
1445747 TTCGGGCAGGATGTTTTCACATGTTTTTCGAAAAATGAGAAAAG-ATACTAATTTAAATCTGAAA
1 TTCGGGCAGGATGTTTTCACATATTTTTCGAAAAATGAGAAAAGTAT-CTCATTTAAATCTAAAA
* * *
1445811 ATTGAAATTTTTAAAAAGCAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAA
65 ATTGAAA-TTTTGAAAAGTAAGAAAATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAA
* * * *
1445876 ATTGGTAAGTCCTTCGGGCTATAAGTAAGTCTTTTGAGCATGATGAGTAAATCTTTCGGGTCATC
129 ATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTTGAGAATGATGAGTAAATCCTTCGGGTCATC
*
1445941 TATAAGTCTTTCGAGCAAGTTGATAAGTCCCTCGAGTCATCCATAAGACT
194 TATAAGCCTTTCGAGCAAGTTGATAAGTCCCTC-AGTCATCCATAAGA-T
*
1445991 TTCGGGCAGGATGTTTTCACATATTTTTTTGAAAAATGAGAGAAA-TATCTCATTTAAATCTAAA
1 TTCGGGCAGGATGTTTTCACATA-TTTTTCGAAAAATGAGA-AAAGTATCTCATTTAAATCTAAA
** * *
1446055 AATTGAAATTTTGAAAAGTAAGAAAATGATTCCCAAAGTTTCGTACCTAGTAAACTATTTCTAAA
64 AATTGAAATTTTGAAAAGTAAGAAAATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAA
* * *
1446120 ATTGGTAAGTCCTTCGGCCCATCAGTAAGTCTTTTGAGAATGATGTGTAAATCCTTCGGATCATC
129 ATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTTGAGAATGATGAGTAAATCCTTCGGGTCATC
**
1446185 TATAAGCCTTTCGAGCAAGAGGATAAGT--C-C--T--T-C-----A-
194 TATAAGCCTTTCGAGCAAGTTGATAAGTCCCTCAGTCATCCATAAGAT
* * * *
1446219 ----GGCAGGATGTTTTTACATATTTTTCGAAAAATTAGAAAAAGTTTCTCCTTTAAA--T----
1 TTCGGGCAGGATGTTTTCACATATTTTTCGAAAAATGAG-AAAAGTATCTCATTTAAATCTAAAA
** * * *
1446274 A-TGAAAAATTGAAAAGTAAAAAAATTATTTACAAAGTTTCTTACCTAGTAAACTATTTCCAAAA
65 ATTGAAATTTTGAAAAGTAAGAAAATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAA
* * * * * *
1446338 TTGGTAAGTCCTTCGGGGCATCAGTTAGTCTTTCGAGAATGATGAGTAAATCTTTCGGGTTATAT
130 TTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTTGAGAATGATGAGTAAATCCTTCGGGTCATCT
* * * * * *
1446403 CTGAGCCTTTCAAGCAA-TATAATAAGTCCTTCAGGTCATCCATAAGGT
195 ATAAGCCTTTCGAGCAAGT-TGATAAGTCCCTCA-GTCATCCATAAGAT
* * * *
1446451 CTTCAGGCAAGATGTTTTCACATATTTTTTGAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAA
1 -TTCGGGCAGGATGTTTTCACATATTTTTCGAAAAATGAGAAAAGTATCTCATTTAAATCTAAAA
* * *
1446516 ATTGAAAATTTTGAAAAGTAA-AAAATGATTTTCAAAGTTTATTACGTAGTAAATTATTAT-CAA
65 ATTG-AAATTTTGAAAAGTAAGAAAATGATTTTCAAAGTTTCTTACCTAGTAAACTATT-TCCAA
** * * * * * *
1446579 AATTTATAAGTCATTCGAGCCATTAATAAGTCTTTTGAGCATAATGAGTAAATCCTTC
128 AATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTTGAGAATGATGAGTAAATCCTTC
1446637 AGGTTATATA
Statistics
Matches: 536, Mismatches: 75, Indels: 71
0.79 0.11 0.10
Matches are distributed among these distances:
217 131 0.24
218 1 0.00
220 1 0.00
222 1 0.00
223 18 0.03
224 30 0.06
225 1 0.00
226 1 0.00
230 1 0.00
235 1 0.00
236 18 0.03
237 31 0.06
238 2 0.00
241 1 0.00
242 2 0.00
243 83 0.15
244 170 0.32
245 38 0.07
246 5 0.01
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (241 bp):
TTCGGGCAGGATGTTTTCACATATTTTTCGAAAAATGAGAAAAGTATCTCATTTAAATCTAAAAA
TTGAAATTTTGAAAAGTAAGAAAATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAAT
TGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTTGAGAATGATGAGTAAATCCTTCGGGTCATCTA
TAAGCCTTTCGAGCAAGTTGATAAGTCCCTCAGTCATCCATAAGAT
Found at i:1447123 original size:41 final size:42
Alignment explanation
Indices: 1447016--1447124 Score: 114
Period size: 42 Copynumber: 2.6 Consensus size: 42
1447006 CCAAAATTGG
* * * *
1447016 TAAGTCATTCGGGCCATCACTAAGTCTTTCGAGCATGATGTG
1 TAAGTCCTTCGGGCCATCACTAAGACTTTCGAGCAAGATGTA
* * * *
1447058 TAAATCCTTTGGGTCATCTA-TAAGAGTTTCGAGCAAGATG-A
1 TAAGTCCTTCGGGCCATC-ACTAAGACTTTCGAGCAAGATGTA
*
1447099 TAAGTCCTTCGGGCCATCCCTAAGAC
1 TAAGTCCTTCGGGCCATCACTAAGAC
1447125 CTCTGGTAGG
Statistics
Matches: 52, Mismatches: 13, Indels: 5
0.74 0.19 0.07
Matches are distributed among these distances:
41 20 0.38
42 31 0.60
43 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (42 bp):
TAAGTCCTTCGGGCCATCACTAAGACTTTCGAGCAAGATGTA
Found at i:1447307 original size:243 final size:242
Alignment explanation
Indices: 1446661--1447369 Score: 924
Period size: 242 Copynumber: 2.9 Consensus size: 242
1446651 CCATCAATAA
* * * * *
1446661 GTTTTTCGAAAAAAAGATAAAAATATCTCATTTAAATCT-GAATGTTCAAATTTTTGAAAAGTAA
1 GTTTTTC-AAAAAATGAGAAAAATTTCTCATTTACATCTAAAAT-TT-AAA-TTTTGAAAAGTAA
** * *
1446725 GAAAATGATTCCCAAAGTTTCGTACCTAGTAAACTATTTCTAAAATTGGTAAGTCCTTC-GGCCA
62 GAAAATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCC-
* * * * *
1446789 ATCATTAAGTCTTTTGAGCATGATGTGTAAATCCATCGGATCATCTATAAGCCTTTCGAGCAAGA
126 ATCAATAAGTCTTTCGAGCATGATGTGTAAATCCTTCGGGTCATCTATAAGACTTTCGAGCAAGA
* *
1446854 GGATAAGTCCTTCGAGCCATCCCTAAGACCTATGGTAGGATGTTTTCACAGG
191 TGATAAGTCCTTCGGGCCATCCCTAAGACCTATGGTAGGATGTTTTCACAGG
* * * *
1446906 TTTTTTCGAAAAATGAG-AAACTTTCTCATTTACATCTAAAATTAAAAATTTTGAAAAGTAAGAA
1 GTTTTTCAAAAAATGAGAAAAATTTCTCATTTACATCTAAAATT-TAAATTTTGAAAAGTAAGAA
** * *
1446970 AACAATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTCGGGCCATCA
65 AATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCA
* * *
1447035 CTAAGTCTTTCGAGCATGATGTGTAAATCCTTTGGGTCATCTATAAGAGTTTCGAGCAAGATGAT
130 ATAAGTCTTTCGAGCATGATGTGTAAATCCTTCGGGTCATCTATAAGACTTTCGAGCAAGATGAT
* *
1447100 AAGTCCTTCGGGCCATCCCTAAGACCTCTGGTAGGATGTTTTCAGAGG
195 AAGTCCTTCGGGCCATCCCTAAGACCTATGGTAGGATGTTTTCACAGG
* *
1447148 GTTTTTCAAAAAATGAGAAAAGTTTCTCATTTACATCTAAAATTTAAATTTTAGAATAGTAAGAA
1 GTTTTTCAAAAAATGAGAAAAATTTCTCATTTACATCTAAAATTTAAATTTT-GAAAAGTAAGAA
* * *
1447213 AATGATTTTCAAAGTTTCTTACCTCGTAAATTATTTCCAAAATTGGTAAATCCTTCGGGCCATCA
65 AATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCA
* ** * * *
1447278 ATAAGTCTGTCGAGCATGATGACTAAATCCTTCGAGCCATCTATAA-TCTTTACGAGCAAGATGA
130 ATAAGTCTTTCGAGCATGATGTGTAAATCCTTCGGGTCATCTATAAGACTTT-CGAGCAAGATGA
**
1447342 TAAGT-CTTCTGGGCCATCGATAAGACCT
194 TAAGTCCTTC-GGGCCATCCCTAAGACCT
1447370 TCGGGCATGA
Statistics
Matches: 406, Mismatches: 51, Indels: 16
0.86 0.11 0.03
Matches are distributed among these distances:
242 199 0.49
243 191 0.47
244 10 0.02
245 6 0.01
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.33
Consensus pattern (242 bp):
GTTTTTCAAAAAATGAGAAAAATTTCTCATTTACATCTAAAATTTAAATTTTGAAAAGTAAGAAA
ATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAA
TAAGTCTTTCGAGCATGATGTGTAAATCCTTCGGGTCATCTATAAGACTTTCGAGCAAGATGATA
AGTCCTTCGGGCCATCCCTAAGACCTATGGTAGGATGTTTTCACAGG
Found at i:1447318 original size:42 final size:42
Alignment explanation
Indices: 1447259--1447341 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
1447249 CCAAAATTGG
* *
1447259 TAAATCCTTCGGGCCATCAATAAGTCTGT-CGAGCATGATGAC
1 TAAATCCTTCGAGCCATCAATAA-TCTGTACGAGCAAGATGAC
* *
1447301 TAAATCCTTCGAGCCATCTATAATCTTTACGAGCAAGATGA
1 TAAATCCTTCGAGCCATCAATAATCTGTACGAGCAAGATGA
1447342 TAAGTCTTCT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
41 4 0.11
42 32 0.89
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (42 bp):
TAAATCCTTCGAGCCATCAATAATCTGTACGAGCAAGATGAC
Found at i:1447412 original size:162 final size:162
Alignment explanation
Indices: 1447214--1447542 Score: 439
Period size: 162 Copynumber: 2.0 Consensus size: 162
1447204 TAGTAAGAAA
* * * *
1447214 ATGATTTTCAAAGTTTCTTACCTCGTAAATTATTTCCAAAATTGGTAAATCCTTCGGGCCATCAA
1 ATGATTTTCAAAGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAATCCTTCGAGCCATCAA
* * * *
1447279 TAAGTCTGT-CGAGCATGATGACTAAATCCTTCGAGCCATCTATAA-TCTTTACGAGCAAGATGA
66 TAAGTCT-TCCGAGAATGATGACTAAATCCTTCGAGCCATATATAAGCCTTT-CAAGCAAGATGA
*
1447342 TAAG-TCTTCTGGGCCATCGATAAGACCTTCGGGC
129 TAAGTTCTTC-GGGCCATCCATAAGACCTTCGGGC
*
1447376 ATGATTTTCAAAGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGAGCCATCAA
1 ATGATTTTCAAAGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAATCCTTCGAGCCATCAA
* * * * *
1447441 TAAGTCTTCCGAGAATGATGAGTAAATCCTTTGGGTCATATATAAGCCTTTCAAGGAAGATGATA
66 TAAGTCTTCCGAGAATGATGACTAAATCCTTCGAGCCATATATAAGCCTTTCAAGCAAGATGATA
* * * *
1447506 AGTTCTTCGGGCCGTCCATAAGGCGTTTGGGC
131 AGTTCTTCGGGCCATCCATAAGACCTTCGGGC
1447538 ATGAT
1 ATGAT
1447543 GCTTTCACAT
Statistics
Matches: 145, Mismatches: 19, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
161 1 0.01
162 135 0.93
163 9 0.06
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (162 bp):
ATGATTTTCAAAGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAATCCTTCGAGCCATCAA
TAAGTCTTCCGAGAATGATGACTAAATCCTTCGAGCCATATATAAGCCTTTCAAGCAAGATGATA
AGTTCTTCGGGCCATCCATAAGACCTTCGGGC
Found at i:1447988 original size:647 final size:646
Alignment explanation
Indices: 1446737--1448027 Score: 1555
Period size: 647 Copynumber: 2.0 Consensus size: 646
1446727 AAATGATTCC
* * *
1446737 CAAAGTTTCGTACCTAGTAAACTATTTCTAAAATTGGTAAGTCCTTCGGCCAATCATTAAGTCTT
1 CAAAGATTCGTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGCCAATCAATAAGTCTT
** * * * *
1446802 TTGAGCATGATGTGTAAATCCATCGGATCATCTATAAGCCTTTCGAGCAAGAGGATAAGTCCTTC
66 CCGAGAATGATGAGTAAATCCATCGGATCATATATAAGCCTTTCAAGCAAGAGGATAAGTCCTTC
* * * *
1446867 GAGCCATCCCTAAGACCTATGGTAGGATGTTTTCACAGGTTTTTTCGAAAAATGAGAAACTTTCT
131 GAGCCATCCATAAGACCTATGGCAGGATGCTTTCACAGATTTTTTCGAAAAATGAGAAACTTTCT
*
1446932 CATTTACATCTAAAATTAAAAATTTTGAAAAGTAAGAAAACAATTTTCAAAGTTTATTACCTAGT
196 CATTTAAATCTAAAATTAAAAATTTTGAAAAGTAAGAAAACAATTTTCAAAGTTTATTACCTAGT
* * *
1446997 AAACTATTTCCAAAATTGGTAAGTCATTCGGGCCATCACTAAGTCTTTCGAGCATGATGTGTAAA
261 AAACTATTTCCAAAATTGGTAAGCCATTCAGGCCATCACTAAGTCTTTCGAGCATGATGAGTAAA
* * * * *
1447062 TCCTTTGGGTCATCTATAAGAGTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCCTAAGACCT
326 TCATTTGGGTCATATATAAGACTTTCAAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCT
* * * * * *
1447127 CTGGTAGGATGTTTTCAGAGGGTTTTTCAAAAAATGAGAAAAGTTTCTCATTTACATCTAAAATT
391 CGGGCAAGATGTTTTCACAGGATTTTCCAAAAAATGAG-AAAGTTTCTCATTTACATCTAAAATT
* * * * *
1447192 TAAATTTTAGAATAGTAAGAAAATGATTTTCAAAGTTTCTTACCTCGTAAATTATTTCCAAAATT
455 GAAATTTTAGAATAGTAACAAAATCATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATT
* * *
1447257 GGTAAATCCTTCGGGCCATCAATAAGTCTGTCGAGCATGATGACTAAATCCTTCGAGCCATCTAT
520 GGTAAATCCTTCGGGCAATCAATAAGTCTGTCAAGCATGATGACTAAATCATTCGAGCCATCTAT
* *
1447322 AATCTTTACGAGCAAGATGATAAGT-CTTCTGGGCCATCGATAAGACCTTCGGGCATGATTTT
585 AAGCTTTACGAGCAAGATGATAAGTCCTTC-AGGCCATCGATAAGACCTTCGGGCATGATTTT
*
1447384 CAAAGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGAGCC-ATCAATAAGTCT
1 CAAAGATTCGTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCG-GCCAATCAATAAGTCT
* * * * * *
1447448 TCCGAGAATGATGAGTAAATCCTTTGGGTCATATATAAGCCTTTCAAGGAAGATGATAAGTTCTT
65 TCCGAGAATGATGAGTAAATCCATCGGATCATATATAAGCCTTTCAAGCAAGAGGATAAGTCCTT
* * * * * * * * *
1447513 CGGGCCGTCCATAAGGCGTTTGGGCATGATGCTTTCACATATTTTTTTGAAAAATGAGAAAAGTT
130 CGAGCCATCCATAAGACCTAT-GGCAGGATGCTTTCACAGATTTTTTCGAAAAATGAG-AAACTT
* **
1447578 TCTCATTTAAATCTAAAAATTGAAAATTTTGAAAA-TAAGAAAACAATTTTCATCGTTTATTACC
193 TCTCATTTAAATCT-AAAATTAAAAATTTTGAAAAGTAAGAAAACAATTTTCAAAGTTTATTACC
* * * * * * *
1447642 TAGTAAACTATTTTCGAAATTGGTAAGCCTTTCAGGCCATTAGTAGGTCTTTCG-GGAGTGATGA
257 TAGTAAACTATTTCCAAAATTGGTAAGCCATTCAGGCCATCACTAAGTCTTTCGAGCA-TGATGA
* * *
1447706 GTATATCATTTGGGTCATATATAAGCCTTTCAAG-AATGTTGATAAGTCCTTCGGGCCATCCATA
321 GTAAATCATTTGGGTCATATATAAGACTTTCAAGCAA-GATGATAAGTCCTTCGGGCCATCCATA
*** * * * *
1447770 AGTTTTTCGGGCAAGATGTTTTCACA-TATTTTCCTAAAAATGAG-AA-TTTTTTATTTA-AGTC
385 AG-ACCTCGGGCAAGATGTTTTCACAGGATTTTCCAAAAAATGAGAAAGTTTCTCATTTACA-TC
* *
1447831 TAAAAATTGAAATTTTTGAA-ATGTAACAAAATCATTCTT-AAAGTTTTTTACCTAGTAAACTAT
448 T-AAAATTGAAATTTTAGAATA-GTAACAAAATCATT-TTCAAAGTTTCTTACCTAGTAAACTAT
* * * * * *
1447894 TTCTAAAATTGGTAAGTCCTTTGGGCAATCAGTAAGTCTTTCAAGCATGATGAGTAAATCATTCG
510 TTCCAAAATTGGTAAATCCTTCGGGCAATCAATAAGTCTGTCAAGCATGATGACTAAATCATTCG
* * * * * * *
1447959 GGTCATCTATAAGCATTT-TGAAG-AAGATGATAAGTCCTTCAGGCCATCTATAAGTCTTTTGGG
575 AGCCATCTATAAGC-TTTACG-AGCAAGATGATAAGTCCTTCAGGCCATCGATAAGACCTTCGGG
1448022 CATGAT
638 CATGAT
1448028 GTTTTCACAT
Statistics
Matches: 541, Mismatches: 89, Indels: 28
0.82 0.14 0.04
Matches are distributed among these distances:
645 1 0.00
646 13 0.02
647 279 0.52
648 48 0.09
649 165 0.30
650 35 0.06
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.34
Consensus pattern (646 bp):
CAAAGATTCGTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGCCAATCAATAAGTCTT
CCGAGAATGATGAGTAAATCCATCGGATCATATATAAGCCTTTCAAGCAAGAGGATAAGTCCTTC
GAGCCATCCATAAGACCTATGGCAGGATGCTTTCACAGATTTTTTCGAAAAATGAGAAACTTTCT
CATTTAAATCTAAAATTAAAAATTTTGAAAAGTAAGAAAACAATTTTCAAAGTTTATTACCTAGT
AAACTATTTCCAAAATTGGTAAGCCATTCAGGCCATCACTAAGTCTTTCGAGCATGATGAGTAAA
TCATTTGGGTCATATATAAGACTTTCAAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCT
CGGGCAAGATGTTTTCACAGGATTTTCCAAAAAATGAGAAAGTTTCTCATTTACATCTAAAATTG
AAATTTTAGAATAGTAACAAAATCATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTG
GTAAATCCTTCGGGCAATCAATAAGTCTGTCAAGCATGATGACTAAATCATTCGAGCCATCTATA
AGCTTTACGAGCAAGATGATAAGTCCTTCAGGCCATCGATAAGACCTTCGGGCATGATTTT
Found at i:1448433 original size:244 final size:243
Alignment explanation
Indices: 1447393--1448547 Score: 1256
Period size: 244 Copynumber: 4.7 Consensus size: 243
1447383 TCAAAGATTC
* * * * * *
1447393 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGAGCCATCAATAAGTCTTCCGAGAATG
1 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTTGGGCCATCAGTAAGTCTTTCGAGCATG
* * * *
1447458 ATGAGTAAATCCTTTGGGTCATATATAAGCCTTTCAAGGAAGATGATAAGTTCTTCGGGCCGTCC
66 ATGAGTAAATCATTTGGGTCATATATAAGCCTTTCAAGAAAGATGATAAGTCCTTCGGGCCATCC
* * *
1447523 ATAAGGCGTTTGGGC-ATGATGCTTTCACATATTTTTTTGAAAAATGAGAAAAGTTTCTCATTTA
131 ATAAGTC-TTTGGGCAAT-ATGTTTTCACATA-TTTTTCGAAAAATGAGAAAAGTTTCTCATTTA
* **
1447587 AATCTAAAAATTGAAAATTTTGAAAA-TAAGAAAACAATTTTCATCGTTTA
193 AATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAACAATTTTAAAGGTTTA
* * * ** * * *
1447637 TTACCTAGTAAACTATTTTCGAAATTGGTAAGCCTTTCAGGCCATTAGTAGGTCTTTCG-GGAGT
1 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTTGGGCCATCAGTAAGTCTTTCGAGCA-T
* * *
1447701 GATGAGTATATCATTTGGGTCATATATAAGCCTTTCAAGAATGTTGATAAGTCCTTCGGGCCATC
65 GATGAGTAAATCATTTGGGTCATATATAAGCCTTTCAAGAAAGATGATAAGTCCTTCGGGCCATC
* * * * * *
1447766 CATAAGTTTTTCGGGCAAGATGTTTTCACATATTTTCCTAAAAATGAG--AA-TTTTTTATTTAA
130 CATAAGTCTTT-GGGCAATATGTTTTCACATATTTTTCGAAAAATGAGAAAAGTTTCTCATTTAA
* * * * *
1447828 GTCTAAAAATTGAAATTTTTGAAATGTAACAAAATC-ATTCTTAAA-GTTTT
194 ATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAA-CAATT-TTAAAGGTTTA
* * * *
1447878 TTACCTAGTAAACTATTTCTAAAATTGGTAAGTCCTTTGGGCAATCAGTAAGTCTTTCAAGCATG
1 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTTGGGCCATCAGTAAGTCTTTCGAGCATG
* * * * *
1447943 ATGAGTAAATCATTCGGGTCATCTATAAGCATTTTGAAG-AAGATGATAAGTCCTTCAGGCCATC
66 ATGAGTAAATCATTTGGGTCATATATAAGC-CTTTCAAGAAAGATGATAAGTCCTTCGGGCCATC
* * * * *
1448007 TATAAGTCTTTTGGGC-ATGATGTTTTCACATCTTTTTTTGAAAACTAAGAAAAGTTTCTCATTT
130 CATAAGTC-TTTGGGCAAT-ATGTTTTCACAT-ATTTTTCGAAAAATGAGAAAAGTTTCTCATTT
* *
1448071 AAATCTAAAAATTGAAAATTTTGGAATGTAAGAAAACAATTTTCAAA-GTTTA
192 AAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAACAATTTT-AAAGGTTTA
* * * * ** *
1448123 TTACCAAGTAAACTATTTCCGAAATTGGTAAGTCTGTTAGGATATCAGTAAGTCTTTCGGGCATG
1 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTTGGGCCATCAGTAAGTCTTTCGAGCATG
* * *
1448188 ATGCA-TATATCATTTGGGTCATATATAAGACTTTCAAGAAAGTTGATAAGTCCTTCGGGCCATC
66 ATG-AGTAAATCATTTGGGTCATATATAAGCCTTTCAAGAAAGATGATAAGTCCTTCGGGCCATC
* * **** * *
1448252 CATAAGTTCTTTGGGCAATACGTTTTCACATATTTTCCGAAAAATGAGACTTTTTTTTTATTTAA
130 CATAAG-TCTTTGGGCAATATGTTTTCACATATTTTTCGAAAAATGAGAAAAGTTTCTCATTTAA
* *
1448317 ATCTAAAAATTGAAATTTTTGAAAAGTAAGAAAACGATTCTTAAAGGTTT-
194 ATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAACAATT-TTAAAGGTTTA
* * *
1448367 TTACCTAGTAAACTATTTCCAAAATTTGTAAGTTTTTTGGGCCATCAGTAAGTTTTTCGAGCATG
1 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTTGGGCCATCAGTAAGTCTTTCGAGCATG
* * ** * ** * *
1448432 ATGTGTAAATCCTTCAGGTCATCTATAAGCCTTTTGAGCAAGATGATAAGTCCTTTGGGCCATCC
66 ATGAGTAAATCATTTGGGTCATATATAAGCCTTTCAAGAAAGATGATAAGTCCTTCGGGCCATCC
* * * * *
1448497 GTAAGATCATCGGGCAAAATGTTTTCACATGTTTTTCGAAAAATGAGAAAA
131 ATAAG-TCTTTGGGCAATATGTTTTCACATATTTTTCGAAAAATGAGAAAA
1448548 ATATGATAAG
Statistics
Matches: 750, Mismatches: 138, Indels: 46
0.80 0.15 0.05
Matches are distributed among these distances:
240 33 0.04
241 137 0.18
242 26 0.03
243 18 0.02
244 349 0.47
245 182 0.24
246 5 0.01
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (243 bp):
TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTTGGGCCATCAGTAAGTCTTTCGAGCATG
ATGAGTAAATCATTTGGGTCATATATAAGCCTTTCAAGAAAGATGATAAGTCCTTCGGGCCATCC
ATAAGTCTTTGGGCAATATGTTTTCACATATTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAAT
CTAAAAATTGAAAATTTTGAAAAGTAAGAAAACAATTTTAAAGGTTTA
Found at i:1448608 original size:76 final size:76
Alignment explanation
Indices: 1448474--1448623 Score: 203
Period size: 76 Copynumber: 2.0 Consensus size: 76
1448464 TTTGAGCAAG
** * *
1448474 ATGATAAGTCCTTTGGGCCATCCGTAAGATCATCGGGCAAAATGTTTTCACATGTTTTTCGAAAA
1 ATGATAAGTCCTTCAGGCCATCCCTAAGATCATCGGGCAAAATGTTTTCACAGGTTTTTCGAAAA
1448539 ATGAGAAAAAT
66 ATGAGAAAAAT
* * * **
1448550 ATGATAAGTCCTTCAGGCCATCCCTAAGA-CCTCTGGTAGGATGTTTTCACAGGTTTTTTCGAAA
1 ATGATAAGTCCTTCAGGCCATCCCTAAGATCATCGGGCAAAATGTTTTCACAGG-TTTTTCGAAA
1448614 AATGAGAAAA
65 AATGAGAAAA
1448624 GTTTCTTATT
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
75 18 0.28
76 46 0.72
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (76 bp):
ATGATAAGTCCTTCAGGCCATCCCTAAGATCATCGGGCAAAATGTTTTCACAGGTTTTTCGAAAA
ATGAGAAAAAT
Found at i:1448881 original size:161 final size:162
Alignment explanation
Indices: 1448669--1448981 Score: 400
Period size: 161 Copynumber: 1.9 Consensus size: 162
1448659 TAGTAAGAAA
* * * *
1448669 ATGATTTTCAAAGTTTCTTACCTCGTAAATTATTTCCAAAATTGGTAAGTCCTTTGAGCCATCAA
1 ATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGATAAGTCCTTCGAGCCATCAA
* * *
1448734 TAAGTCTGT-AGAGCATGATGACTAAATCCTTCAAGTCATCTATAAGCTTTTCAAGCAAAATGAT
66 TAAGTCTGTCA-AGCATGATGACTAAATCCTTCAAGTCATATATAAGCCTTTCAAGCAAAATAAT
1448798 AAG-TCTTCTGGGCCATCCATAAGACCTTCGGCC
130 AAGTTCTTC-GGGCCATCCATAAGACCTTCGGCC
* * *
1448831 ATGATTTTCAAA-TATTCTTACCTAGT-AACTATTTCCAAAATTGATAAGTCCTTCGGGCTATTA
1 ATGATTTTCAAAGT-TTCTTACCTAGTAAACTATTTCCAAAATTGATAAGTCCTTCGAGCCATCA
* * ** * * *
1448894 ATAAGTCTTTCAAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGGAAGATAAT
65 ATAAGTCTGTCAAGCATGATGACTAAATCCTTCAAGTCATATATAAGCCTTTCAAGCAAAATAAT
* *
1448959 ATGTTCTTCGGGCCGTCCATAAG
130 AAGTTCTTCGGGCCATCCATAAG
1448982 TCTTTTGGGC
Statistics
Matches: 129, Mismatches: 19, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
161 100 0.78
162 29 0.22
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (162 bp):
ATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGATAAGTCCTTCGAGCCATCAA
TAAGTCTGTCAAGCATGATGACTAAATCCTTCAAGTCATATATAAGCCTTTCAAGCAAAATAATA
AGTTCTTCGGGCCATCCATAAGACCTTCGGCC
Found at i:1449453 original size:41 final size:41
Alignment explanation
Indices: 1449361--1449467 Score: 117
Period size: 42 Copynumber: 2.6 Consensus size: 41
1449351 CCAAAATTCG
* * * *
1449361 TAAGTCCTTTGGGCCATCAGTAAGTCTTTCGAGCATGATGTG
1 TAAGTCCTTCGGGCCATCA-TAAGCCTTTCGAGCAAGATGTA
* * *
1449403 TAAATCCTTCGGGTCATCTATAAGCCTTTTGAGCAAGATG-A
1 TAAGTCCTTCGGGCCATC-ATAAGCCTTTCGAGCAAGATGTA
1449444 TAAGTCCTTCGGGCCATCCATAAG
1 TAAGTCCTTCGGGCCAT-CATAAG
1449468 ATCTTTAGGC
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
41 20 0.37
42 33 0.61
43 1 0.02
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.31
Consensus pattern (41 bp):
TAAGTCCTTCGGGCCATCATAAGCCTTTCGAGCAAGATGTA
Found at i:1449731 original size:244 final size:244
Alignment explanation
Indices: 1448848--1449907 Score: 1229
Period size: 244 Copynumber: 4.4 Consensus size: 244
1448838 TCAAATATTC
* * * *
1448848 TTACCTAGT-AACTATTTCCAAAATTGATAAGTCCTTCGGGCTATTAATAAGTCTTTCAAGCATG
1 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATAAGTCTTTCGAGCATG
* * * * *
1448912 ATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGGAAGATAATATGTTCTTCGGGCCGTCC
66 ATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGAAAGATTATAAGTCCTTCGGGCCATCC
* * ** * * ** * * *
1448977 ATAAGTCTTTTGGGCATGATGTTTTCACATTTTTTTTTGAAAACTAAGAAAAGTTTCTCATTTAA
131 ATAAGACCTTCAGGCAAGATGTTTTCACA-TATTTTTCAAAAAATGAGAAAAATTTCTCATTTAA
* * *
1449042 ATCTAAAAATTGAAAATTTTGGAATGTAAGAAAACAATTTTCAAAGTTTA
195 ATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAACAATTTTCAAAGTGTA
* * * ** * * * **
1449092 TTACCTAGTAAACTATTTTCGAAATTGGTAAGTCTTTCATGCCATCAGTAGGTCTTTCGGGTGTG
1 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATAAGTCTTTCGAGCATG
* * * * *
1449157 ATGAGTATATCATTCGGGTCATATATAAGACTTTCAAGAATG-TTGATAAGTCCTTCGGGCCATC
66 ATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGAAAGATT-ATAAGTCCTTCGGGCCATC
*** * * *
1449221 CATAAGTTGTTC-GAGCAAGATGTTTTCACATATTTTCCAAAAAATGAG---AATTTTTTATTTA
130 CATAAGACCTTCAG-GCAAGATGTTTTCACATATTTTTCAAAAAATGAGAAAAATTTCTCATTTA
* * * *
1449282 AAACTAAAAATTGAAATTTTTGAAAAGTAAGAAAACGATTCTT-AAAG-GTTT
194 AATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAACAATT-TTCAAAGTG-TA
* * *
1449333 TTACCTAGTAAACTATTTCCAAAATTCGTAAGTCCTTTGGGCCATCAGTAAGTCTTTCGAGCATG
1 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATAAGTCTTTCGAGCATG
* * * * *
1449398 ATGTGTAAATCCTTCGGGTCATCTATAAGCCTTTTGAGCAAGATGATAAGTCCTTCGGGCCATCC
66 ATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGAAAGATTATAAGTCCTTCGGGCCATCC
* * * * * *
1449463 ATAAGATCTTTAGGCAAAATGTTTTCACATGTTTTTCGAAAAATGAGAAAAATTTCTCTTTTAAA
131 ATAAGACCTTCAGGCAAGATGTTTTCACATATTTTTCAAAAAATGAGAAAAATTTCTCATTTAAA
* ** *
1449528 TCTTAAAATTG-AAATTTTAGAAAAGTAAGAAAACGTTTTTCAAAGTGTC
196 TCTAAAAATTGAAAATTTT-GAAAAGTAAGAAAACAATTTTCAAAGTGTA
*
1449577 TTACCTAGTAAACTATTTCAAAAATTGGTAAGTCCTTCGGGCCATCAATAAGTCTTTCGAGCATG
1 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATAAGTCTTTCGAGCATG
** *
1449642 ATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGAAAGATTATAAGTCCTTCAAGCCATAC
66 ATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGAAAGATTATAAGTCCTTCGGGCCATCC
* * ** *
1449707 ATAAGACCTTCAGGCAGGATGTTTTCACATATTTTTAAAAAAATGAGAAATGTTTTTCATTTAAA
131 ATAAGACCTTCAGGCAAGATGTTTTCACATATTTTTCAAAAAATGAGAAAAATTTCTCATTTAAA
* * * * *
1449772 TATGAAAATTGAAAATTTTGAAATGTAAGAAAACAATTTTAAAAGTTTA
196 TCTAAAAATTGAAAATTTTGAAAAGTAAGAAAACAATTTTCAAAGTGTA
** * *
1449821 TTACCTAGTAAACTATTTCCAAAATTACTAAGTCATTCGGGCCATCACTAAGTCTTTCGAGCATG
1 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATAAGTCTTTCGAGCATG
* *
1449886 ATGTGTAAATCCTTAGGGTCAT
66 ATGAGTAAATCCTTCGGGTCAT
1449908 TCAGGCAGGA
Statistics
Matches: 684, Mismatches: 118, Indels: 28
0.82 0.14 0.03
Matches are distributed among these distances:
241 195 0.29
242 4 0.01
243 8 0.01
244 352 0.51
245 125 0.18
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (244 bp):
TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATAAGTCTTTCGAGCATG
ATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGAAAGATTATAAGTCCTTCGGGCCATCC
ATAAGACCTTCAGGCAAGATGTTTTCACATATTTTTCAAAAAATGAGAAAAATTTCTCATTTAAA
TCTAAAAATTGAAAATTTTGAAAAGTAAGAAAACAATTTTCAAAGTGTA
Found at i:1450058 original size:192 final size:192
Alignment explanation
Indices: 1449715--1450099 Score: 671
Period size: 192 Copynumber: 2.0 Consensus size: 192
1449705 ACATAAGACC
1449715 TTCAGGCAGGATGTTTTCACATATTTTTAAAAAAATGAGAAATGTTTTTCATTTAAATATGAAAA
1 TTCAGGCAGGATGTTTTCACATATTTTTAAAAAAATGAGAAATGTTTTTCATTTAAATATGAAAA
*
1449780 TTGAAAATTTTGAAATGTAAGAAAACAATTTTAAAAGTTTATTACCTAGTAAACTATTTCCAAAA
66 TTGAAAATTTTGAAAAGTAAGAAAACAATTTTAAAAGTTTATTACCTAGTAAACTATTTCCAAAA
1449845 TTACTAAGTCATTCGGGCCATCACTAAGTCTTTCGAGCATGATGTGTAAATCCTTAGGGTCA
131 TTACTAAGTCATTCGGGCCATCACTAAGTCTTTCGAGCATGATGTGTAAATCCTTAGGGTCA
* * *
1449907 TTCAGGCAGGATGTTTTCACATGTTTTTAGAAAAATGAGAAATGTTTTTCATTTAAATCTGAAAA
1 TTCAGGCAGGATGTTTTCACATATTTTTAAAAAAATGAGAAATGTTTTTCATTTAAATATGAAAA
* *
1449972 TTGAAATTTTTGAAAAGTAAGAAAACAATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAA
66 TTGAAAATTTTGAAAAGTAAGAAAACAATTTTAAAAGTTTATTACCTAGTAAACTATTTCCAAAA
** * * *
1450037 TTTGTAATTCATTCTGGCCATCACTAAGTCTTTCGAGCATGATGTGTAAATCCTTCGGGTCA
131 TTACTAAGTCATTCGGGCCATCACTAAGTCTTTCGAGCATGATGTGTAAATCCTTAGGGTCA
1450099 T
1 T
1450100 CTATAAGCCT
Statistics
Matches: 182, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
192 182 1.00
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (192 bp):
TTCAGGCAGGATGTTTTCACATATTTTTAAAAAAATGAGAAATGTTTTTCATTTAAATATGAAAA
TTGAAAATTTTGAAAAGTAAGAAAACAATTTTAAAAGTTTATTACCTAGTAAACTATTTCCAAAA
TTACTAAGTCATTCGGGCCATCACTAAGTCTTTCGAGCATGATGTGTAAATCCTTAGGGTCA
Found at i:1450358 original size:243 final size:243
Alignment explanation
Indices: 1449914--1450394 Score: 653
Period size: 243 Copynumber: 2.0 Consensus size: 243
1449904 TCATTCAGGC
* * * *
1449914 AGGATGTTTTCACATGTTTTTAGAAAAATGAGAAATGTTTTTCATTTAAATCTGAAAATTGAAAT
1 AGGATATTTTCACAGGTTTTTAGAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAAATTGAAAT
*
1449979 TTTTGAAAAGTAAGAAAACAATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTTGTAA
66 TTTTGAAAAGTAAGAAAACAATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAA
* * * * * * * ** *
1450044 TTCATTCTGGCCATCACTAAGTCTTTCGAGCATGATGTGTAAATCCTTCGGGTCATCTATAAGCC
131 GTCATTCGGGCCATCAATAAATATGTCGAGAATGATGACTAAATCCTTCGAGTCATCTATAAGCC
*
1450109 TTTCGAGCAAGATGATAAGTCCTTC-AGGCCATCCCTAAGACCTCTGGT
196 TTTCGAGCAAGATGATAAGT-CTTCTAGGCCATCCATAAGACCTCTGGT
** * *
1450157 AGGATATTTTCACAGGTTTTTTCTAAAAATGAGAAAAGTTTCTCATTTACATCT-AAAATTTAAA
1 AGGATATTTTCACAGG-TTTTTAGAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAAATTGAAA
* * * *
1450221 TTTTTGAATAGTAAGAAAA-ATATTTTCAAAGTTTCTTACCTCGTAAATTATTTCCAAAATTGGT
65 TTTTTGAAAAGTAAGAAAACA-ATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGT
* * * *
1450285 AAGTCCTTCGGGCCATCAATAAATATGTCGAGAATGATGACTAAATCCTTTGAGTCATCTGTATG
129 AAGTCATTCGGGCCATCAATAAATATGTCGAGAATGATGACTAAATCCTTCGAGTCATCTATAAG
*
1450350 CTTTTCGAGCAAGATGATAAGTCTTCTAGGCCATCCATAAGACCT
194 CCTTTCGAGCAAGATGATAAGTCTTCTAGGCCATCCATAAGACCT
1450395 TCGGGCATGA
Statistics
Matches: 206, Mismatches: 29, Indels: 6
0.85 0.12 0.02
Matches are distributed among these distances:
242 5 0.02
243 169 0.82
244 32 0.16
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.35
Consensus pattern (243 bp):
AGGATATTTTCACAGGTTTTTAGAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAAATTGAAAT
TTTTGAAAAGTAAGAAAACAATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAA
GTCATTCGGGCCATCAATAAATATGTCGAGAATGATGACTAAATCCTTCGAGTCATCTATAAGCC
TTTCGAGCAAGATGATAAGTCTTCTAGGCCATCCATAAGACCTCTGGT
Found at i:1450437 original size:162 final size:162
Alignment explanation
Indices: 1450242--1450567 Score: 438
Period size: 162 Copynumber: 2.0 Consensus size: 162
1450232 TAAGAAAAAT
* * *
1450242 ATTTTCAAAGTTTCTTACCTCGTAAATTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATAA
1 ATTTTCAAAGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATAA
* ** * * * *
1450307 ATATGTCGAGAATGATGACTAAATCCTTTGAGTCATCTGTATGCTTTTCGAGCAAGATGATAAG-
66 ATATGTCGAGAATGATGACTAAATCATTCAAGTCATATATAAGCCTTTCGAGCAAGATGATAAGT
* *
1450371 TCTTCTAGGCCATCCATAAGACCTTCGGGCATG
131 TCTTCGA-GCCATCCAAAAGACCTTCGGGCATG
*
1450404 ATTTTCAATGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATAA
1 ATTTTCAAAGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATAA
* * * * * *
1450469 GTCTTTCGAGCATGATGAGTAAATCATTCAAGTCATATATAAGCCTTTCGAGGAAGATGATAAGT
66 ATATGTCGAGAATGATGACTAAATCATTCAAGTCATATATAAGCCTTTCGAGCAAGATGATAAGT
* * *
1450534 TCTTCGAGCCATCCAAAAGTCTTTTGGGCATG
131 TCTTCGAGCCATCCAAAAGACCTTCGGGCATG
1450566 AT
1 AT
1450568 GTTTTCATAT
Statistics
Matches: 141, Mismatches: 22, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
162 135 0.96
163 6 0.04
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (162 bp):
ATTTTCAAAGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATAA
ATATGTCGAGAATGATGACTAAATCATTCAAGTCATATATAAGCCTTTCGAGCAAGATGATAAGT
TCTTCGAGCCATCCAAAAGACCTTCGGGCATG
Found at i:1450793 original size:406 final size:405
Alignment explanation
Indices: 1449999--1450796 Score: 958
Period size: 406 Copynumber: 2.0 Consensus size: 405
1449989 TAAGAAAACA
* * * * *
1449999 ATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTTGTAATTCATTCTGGCCATCACTAA
1 ATTTTCAAAGATTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTCGGGCCATCAATAA
* * ** *
1450064 GTCTTTCGAGCATGATGTGTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATAAGT
66 GTCTTTCGAGCATGATGAGTAAATCATTCAAGTCATATATAAGCCTTTCGAGCAAGATGATAAGT
** * *
1450129 CCTTCAGGCCATCCCTAAGACCTCTGGTAGGATATTTTCACAGGTTTTTTCTAAAAATGAGAAAA
131 CCTTCAGGCCATCCAAAAGACCTCTGGCAGGATATTTTCACAGGTTTTTTCGAAAAATGAGAAAA
* * * * * * *
1450194 GTTTCTCATTTACATCTAAAATTTAAATTTTTGAATAGTAAGAAAAATATTTTCAAAGTTTCTTA
196 GTTTCTAATTTAAATCTAAAAATGAAAATTTTGAAAAGTAAGAAAAATATTTTCAAAGTTTATTA
* * * *
1450259 CCTCGTAAATTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATAAATATGTCGAGAATGATG
261 CATAGTAAACTATTTCCAAAATTGGTAAGTCCTTCAGGCCATCAATAAATATGTCGAGAATGATG
* * * * * *
1450324 ACTAAATCCTTTGAGTCATCTGTATGCTTTTCGAGCAAGATGATAAGTCTTCTAGGCCATCCATA
326 ACTAAATCATTCGAGTCATATATAAGCTTTTCAAGCAAGATGATAAGTCTTCTAGGCCATCCATA
1450389 AGACCTTCGGGCATG
391 AGACCTTCGGGCATG
* * *
1450404 ATTTTCAATGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATAA
1 ATTTTCAAAGATTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTCGGGCCATCAATAA
*
1450469 GTCTTTCGAGCATGATGAGTAAATCATTCAAGTCATATATAAGCCTTTCGAGGAAGATGATAAGT
66 GTCTTTCGAGCATGATGAGTAAATCATTCAAGTCATATATAAGCCTTTCGAGCAAGATGATAAGT
* * * * * * * **
1450534 TCTTC-GAGCCATCCAAAAGTCTTTTGGGCATGATGTTTTCATATTTTTTTTCGAAAAATGAGAA
131 CCTTCAG-GCCATCCAAAAGACCTCT-GGCAGGATATTTTCACAGGTTTTTTCGAAAAATGAGAA
1450598 AAGTTTCTAATTTAAATCTAAAAATGAAAATTTTGAAAAGTAAGAAAACA-ATTTTCAAAGTTTA
194 AAGTTTCTAATTTAAATCTAAAAATGAAAATTTTGAAAAGTAAGAAAA-ATATTTTCAAAGTTTA
* * * * * ** * * * **
1450662 TTACATAGTAAACTATTTTCGAAATTGGTAAGTCTTTCATGCCATCAGTAGGTCTTTCGGGCGTG
258 TTACATAGTAAACTATTTCCAAAATTGGTAAGTCCTTCAGGCCATCAATAAATATGTCGAGAATG
* * * * *
1450727 ATGAGTATATCATTCGGGTCATATATAAGAC-TTTCAAG-AATGTTGATAAGTCCTTC-GGGCCA
323 ATGACTAAATCATTCGAGTCATATATAAG-CTTTTCAAGCAA-GATGATAAGT-CTTCTAGGCCA
1450789 TCCATAAG
385 TCCATAAG
1450797 TTCTTCGAGC
Statistics
Matches: 326, Mismatches: 61, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
404 1 0.00
405 135 0.41
406 184 0.56
407 6 0.02
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35
Consensus pattern (405 bp):
ATTTTCAAAGATTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTCGGGCCATCAATAA
GTCTTTCGAGCATGATGAGTAAATCATTCAAGTCATATATAAGCCTTTCGAGCAAGATGATAAGT
CCTTCAGGCCATCCAAAAGACCTCTGGCAGGATATTTTCACAGGTTTTTTCGAAAAATGAGAAAA
GTTTCTAATTTAAATCTAAAAATGAAAATTTTGAAAAGTAAGAAAAATATTTTCAAAGTTTATTA
CATAGTAAACTATTTCCAAAATTGGTAAGTCCTTCAGGCCATCAATAAATATGTCGAGAATGATG
ACTAAATCATTCGAGTCATATATAAGCTTTTCAAGCAAGATGATAAGTCTTCTAGGCCATCCATA
AGACCTTCGGGCATG
Found at i:1451204 original size:244 final size:244
Alignment explanation
Indices: 1450404--1452273 Score: 2064
Period size: 244 Copynumber: 7.7 Consensus size: 244
1450394 TTCGGGCATG
* * * * * *
1450404 ATTTTCAATGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATAA
1 ATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCAGGCCATCAGTAA
* ** *
1450469 GTCTTTCGAGCATGATGAGTAAATCATTCAAGTCATATATAAGCCTTTCGAGGAAGATGATAAGT
66 GTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGAAAGATGATAAGT
* * * * * * * *
1450534 TCTTCGAGCCATCCAAAAGTCTTTTGGGCATGATGTTTTCATATTTTTTTTCGAAAAATGAGAAA
131 CCTTCGGGCCATCCATAAGACTTTCGGGCAGGATGTTTTCACA-TGTTTTTCGAAAAATGAGAAA
* *
1450599 AGTTTCTAATTTAAATCTAAAAA-TGAAAATTTTGAAAAGTAAGAAAACA
195 ATTTTCTCATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAACA
* * * * *
1450648 ATTTTCAAAGTTTATTACATAGTAAACTATTTTCGAAATTGGTAAGTCTTTCATGCCATCAGTAG
1 ATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCAGGCCATCAGTAA
* * * * * * * *
1450713 GTCTTTCGGGCGTGATGAGTATATCATTCGGGTCATATATAAGACTTTCAAGAATGTTGATAAGT
66 GTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGAAAGATGATAAGT
* * * * *
1450778 CCTTCGGGCCATCCATAAG-TTCTTCGAGCAAGATGTTTTCACATATTTTTCGAAAAAT--GCAA
131 CCTTCGGGCCATCCATAAGACT-TTCGGGCAGGATGTTTTCACATGTTTTTCGAAAAATGAGAAA
* * * * * *
1450840 TTTTTTTTATTTAAATCTAAAAATTGAAATTTTTGAAACGTAAGAAAACG
195 ATTTTCTCATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAACA
* * * * * *
1450890 ATTCTT-AATGTTTTTTACCCAGTAAACTATTTCCAAAATTGGTAAGTCCTTT-GGGCAACCAGT
1 ATT-TTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGT-CTTTCAGGCCATCAGT
* * * * *
1450953 AAGTCTTTCGTGCATGATGAGTAAATCGTTCGGGTCATCTATAAGCCTTTTGAGGAAGATGATAA
64 AAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGAAAGATGATAA
* * * *
1451018 GTCCTTCAGGCCATCTATAAGACTTTCGGGTAGGATGTTTCCACATGTTTTTCGAAAAATGAGAA
129 GTCCTTCGGGCCATCCATAAGACTTTCGGGCAGGATGTTTTCACATGTTTTTCGAAAAATGAGAA
*
1451083 AATTTTCTCATTGAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAACA
194 AATTTTCTCATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAACA
* * *
1451134 ATTTTCAAAGTTTATTACATAGTAAACTATTTCCAAAATTAGTATGTCTTTCAGGCCATCAGTAA
1 ATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCAGGCCATCAGTAA
* * * * * *
1451199 GTCTTTCGTGCATGATGCA-TATATCATTTGGGTCATATATAAGCCTTTCAAGAAAGTTGATAAG
66 GTCTTTCGAGCATGATG-AGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGAAAGATGATAAG
* ** *
1451263 TCCTTCGGGCCATCCATAAG-TTCTTCGGGCAATATGTTTTCACAT-ATTTTCTGAAAAATGAG-
130 TCCTTCGGGCCATCCATAAGACT-TTCGGGCAGGATGTTTTCACATGTTTTTC-GAAAAATGAGA
* * *
1451325 -AATTGCTT-T-ATTTAAATCTAAAAATTGAAATTTTTGAAAACT-AGGAAACA
193 AAATT--TTCTCATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAACA
* * *
1451375 ATTCTT-AAAGGTTT-TTACCTAGTAAATTATTTCCAAAATTGGTAAGTCCTTTGA-GCCATTAG
1 ATT-TTCAAA-GTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGT-CTTTCAGGCCATCAG
* * * *
1451437 TAAGTCTTTCGAGCATGATGTGTAAATCCTTCGGGTCATCTATAAGCCTTTTGAGCAAGATGATA
63 TAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGAAAGATGATA
** *
1451502 AGTCCTTCGGGAAATCCATAAGA-TCTTCGGGCA-AATTGTTTTCACATGTTTTTCGAAAAATGA
128 AGTCCTTCGGGCCATCCATAAGACT-TTCGGGCAGGA-TGTTTTCACATGTTTTTCGAAAAATGA
* ** * * *
1451565 TAAAAAATTCTCTTTTAAATCTTAAAATTG-AAATTTTAGAAAAGTAAGAAAACG
191 GAAAATTTTCTCATTTAAATCTAAAAATTGAAAATTTT-GAAAAGTAAGAAAACA
* * * * ** * * *
1451619 TTTTTCAAAGTGTCTTACCTAGTACACTATTTTGAAAATTGATAAGTCCTTCAGGCCATCAATAA
1 ATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCAGGCCATCAGTAA
*
1451684 GTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGAAAGATTATAAGT
66 GTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGAAAGATGATAAGT
** * * * * *
1451749 CCTTCAAGCCATACATAAGACCTTCAGGCAGGATGTTTTCACATATTTTTAGAAAAATGAG-AAA
131 CCTTCGGGCCATCCATAAGACTTTCGGGCAGGATGTTTTCACATGTTTTTCGAAAAATGAGAAAA
* * *
1451813 TGTTTTTCATTTAAATATGAAAATTGAAAATTTTGAAAAGTAAGAAAACA
196 T-TTTCTCATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAACA
* * *
1451863 ATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTCGGGCCATCACTAA
1 ATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCAGGCCATCAGTAA
1451928 GTCTTTCGAGCATGAT-ATGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGAAAGATGATAAG
66 GTCTTTCGAGCATGATGA-GTAAATCCTTCGGGTCATATATAAGCCTTTCGAGAAAGATGATAAG
* * * * *
1451992 TCCTTCAGGCCATCCCTAAGAC-CTCTGGCAGGATGTTTTCACAGGTTTTTTCGAAAAATGAGAA
130 TCCTTCGGGCCATCCATAAGACTTTCGGGCAGGATGTTTTCACATG-TTTTTCGAAAAATGAGAA
* * * * * **
1452056 AAGTTTCTCATTTACATCT-AAAATTTAAATTTTTGAATAGTAAGAAAATT
194 AATTTTCTCATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAACA
* * * * * * * *
1452106 ATTTACAAAGTTTCTTACCTCGTAAATTGTTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATAA
1 ATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCAGGCCATCAGTAA
* * * * * * * * * *
1452171 ATATGTCGAGCATGATGACTAAATCCTTTGAGTCATCTTTAAGCTTTTCGAGCAAGATGATAAGT
66 GTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGAAAGATGATAAGT
* *
1452236 -CTTCTGGGCCATCCATAAGACCTTCGGGCATGAT-TTTT
131 CCTTC-GGGCCATCCATAAGACTTTCGGGCAGGATGTTTT
1452274 AAAGATTCTT
Statistics
Matches: 1368, Mismatches: 218, Indels: 81
0.82 0.13 0.05
Matches are distributed among these distances:
240 1 0.00
241 177 0.13
242 232 0.17
243 246 0.18
244 700 0.51
245 12 0.01
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (244 bp):
ATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCAGGCCATCAGTAA
GTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGAAAGATGATAAGT
CCTTCGGGCCATCCATAAGACTTTCGGGCAGGATGTTTTCACATGTTTTTCGAAAAATGAGAAAA
TTTTCTCATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAACA
Found at i:1451674 original size:485 final size:485
Alignment explanation
Indices: 1450418--1452273 Score: 2252
Period size: 485 Copynumber: 3.8 Consensus size: 485
1450408 TCAATGATTC
*
1450418 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATAAGTCTTTCGAGCATG
1 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATG
* ** *
1450483 ATGAGTAAATCATTCAAGTCATATATAAGCCTTTCGAGGAAGATGATAAGTTCTTC-GAGCCATC
66 ATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGGAAGATGATAAGTCCTTCAG-GCCATC
* * * * * * *
1450547 CAAAAGTCTTTTGGGCATGATGTTTTCATATTTTTTTTCGAAAAATGAGAAAAGTTTCTAATTTA
130 CATAAGACTTTCGGGCAGGATGTTTTCACA-TGTTTTTCGAAAAATGAGAAAAGTTTCTCATTTA
*
1450612 AATCTAAAAATGAAAATTTTGAAAAGTAAGAAAACAATTTTCAAAGTTTATTACATAGTAAACTA
194 AATCTAAAATTGAAAATTTTGAAAAGTAAGAAAACAATTTTCAAAGTTTATTACATAGTAAACTA
* * * * * * * * * *
1450677 TTTTCGAAATTGGTAAGTCTTTCATGCCATCAGTAGGTCTTTCGGGCGTGATGAGTATATCATTC
259 TTTCCAAAATTGATAAGTCCTTCAGGCCATCAATAAGTCTTTCGAGCATGATGAGTAAATCATTC
* * ** *
1450742 GGGTCATATATAAGACTTTCAAGAATGTTGATAAGTCCTTCGGGCCATCCATAAGTTCTTCGAGC
324 GGGTCATATATAAGCCTTTCAAGAAAGTTGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGC
* * *
1450807 AAGATGTTTTCACATATTTTTCGAAAAATGCA-ATTTTTTTTATTTAAATCTAAAAATTGAAATT
389 AAGATGTTTTCACATATTTTTAGAAAAATG-AGAATTGTTTTATTTAAATCTAAAAATTGAAATT
* * *
1450871 TTTG-AAACGTAAGAAAACGATTCTTAATGTTTT
453 TTTGAAAAC-TAAGAAAACAATTCTTAAAGGTTT
* * * * *
1450904 TTACCCAGTAAACTATTTCCAAAATTGGTAAGTCCTTTGGGCAACCAGTAAGTCTTTCGTGCATG
1 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATG
* * * *
1450969 ATGAGTAAATCGTTCGGGTCATCTATAAGCCTTTTGAGGAAGATGATAAGTCCTTCAGGCCATCT
66 ATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGGAAGATGATAAGTCCTTCAGGCCATCC
* * * *
1451034 ATAAGACTTTCGGGTAGGATGTTTCCACATGTTTTTCGAAAAATGAGAAAATTTTCTCATTGAAA
131 ATAAGACTTTCGGGCAGGATGTTTTCACATGTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAA
1451099 TCTAAAAATTGAAAATTTTGAAAAGTAAGAAAACAATTTTCAAAGTTTATTACATAGTAAACTAT
196 TCT-AAAATTGAAAATTTTGAAAAGTAAGAAAACAATTTTCAAAGTTTATTACATAGTAAACTAT
* * * * *
1451164 TTCCAAAATT-AGTATGTCTTTCAGGCCATCAGTAAGTCTTTCGTGCATGATGCA-TATATCATT
260 TTCCAAAATTGA-TAAGTCCTTCAGGCCATCAATAAGTCTTTCGAGCATGATG-AGTAAATCATT
* **
1451227 TGGGTCATATATAAGCCTTTCAAGAAAGTTGATAAGTCCTTCGGGCCATCCATAAGTTCTTCGGG
323 CGGGTCATATATAAGCCTTTCAAGAAAGTTGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGG
* *
1451292 CAATATGTTTTCACATATTTTCT-GAAAAATGAGAATTGCTTTATTTAAATCTAAAAATTGAAAT
388 CAAGATGTTTTCACATATTTT-TAGAAAAATGAGAATTGTTTTATTTAAATCTAAAAATTGAAAT
*
1451356 TTTTGAAAACT-AGGAAACAATTCTTAAAGGTTT
452 TTTTGAAAACTAAGAAAACAATTCTTAAAGGTTT
* * * *
1451389 TTACCTAGTAAATTATTTCCAAAATTGGTAAGTCCTTTGAGCCATTAGTAAGTCTTTCGAGCATG
1 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATG
* * * * * **
1451454 ATGTGTAAATCCTTCGGGTCATCTATAAGCCTTTTGAGCAAGATGATAAGTCCTTCGGGAAATCC
66 ATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGGAAGATGATAAGTCCTTCAGGCCATCC
* * ** *
1451519 ATAAGA-TCTTCGGGCA-AATTGTTTTCACATGTTTTTCGAAAAATGATAAAAAATTCTCTTTTA
131 ATAAGACT-TTCGGGCAGGA-TGTTTTCACATGTTTTTCGAAAAATGAGAAAAGTTTCTCATTTA
** * * * *
1451582 AATCTTAAAATTG-AAATTTTAGAAAAGTAAGAAAACGTTTTTCAAAGTGTCTTACCTAGTACAC
194 AATC-TAAAATTGAAAATTTT-GAAAAGTAAGAAAACAATTTTCAAAGTTTATTACATAGTAAAC
** *
1451646 TATTTTGAAAATTGATAAGTCCTTCAGGCCATCAATAAGTCTTTCGAGCATGATGAGTAAATCCT
257 TATTTCCAAAATTGATAAGTCCTTCAGGCCATCAATAAGTCTTTCGAGCATGATGAGTAAATCAT
* ** * *
1451711 TCGGGTCATATATAAGCCTTTCGAGAAAGATT-ATAAGTCCTTCAAGCCATACATAAGACCTTCA
322 TCGGGTCATATATAAGCCTTTCAAGAAAG-TTGATAAGTCCTTCGGGCCATCCATAAGACCTTCG
* * * *
1451775 GGCAGGATGTTTTCACATATTTTTAGAAAAATGAGAAATGTTTTTCATTTAAATATGAAAATTGA
386 GGCAAGATGTTTTCACATATTTTTAGAAAAATGAGAATTG-TTTT-ATTTAAATCTAAAAATTGA
* *
1451840 AAATTTTGAAAAGTAAGAAAACAATT-TTCAAA-GTTT
449 AATTTTTGAAAACTAAGAAAACAATTCTT-AAAGGTTT
* *
1451876 ATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTCGGGCCATCACTAAGTCTTTCGAGCAT
1 -TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCAT
*
1451941 GAT-ATGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGAAAGATGATAAGTCCTTCAGGCCAT
65 GATGA-GTAAATCCTTCGGGTCATATATAAGCCTTTCGAGGAAGATGATAAGTCCTTCAGGCCAT
* * * *
1452005 CCCTAAGAC-CTCTGGCAGGATGTTTTCACAGGTTTTTTCGAAAAATGAGAAAAGTTTCTCATTT
129 CCATAAGACTTTCGGGCAGGATGTTTTCACATG-TTTTTCGAAAAATGAGAAAAGTTTCTCATTT
* * * * ** * * * * *
1452069 ACATCTAAAATTTAAATTTTTGAATAGTAAGAAAATTATTTACAAAGTTTCTTACCTCGTAAATT
193 AAATCTAAAATTGAAAATTTTGAAAAGTAAGAAAACAATTTTCAAAGTTTATTACATAGTAAACT
* * * * * * * *
1452134 GTTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATAAATATGTCGAGCATGATGACTAAATCCTT
258 ATTTCCAAAATTGATAAGTCCTTCAGGCCATCAATAAGTCTTTCGAGCATGATGAGTAAATCATT
* * * * * * * *
1452199 TGAGTCATCTTTAAGCTTTTCGAGCAAGATGATAAGT-CTTCTGGGCCATCCATAAGACCTTCGG
323 CGGGTCATATATAAGCCTTTCAAGAAAGTTGATAAGTCCTTC-GGGCCATCCATAAGACCTTCGG
*
1452263 GCATGAT-TTTT
387 GCAAGATGTTTT
1452274 AAAGATTCTT
Statistics
Matches: 1190, Mismatches: 153, Indels: 54
0.85 0.11 0.04
Matches are distributed among these distances:
484 11 0.01
485 410 0.34
486 388 0.33
487 209 0.18
488 172 0.14
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (485 bp):
TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATG
ATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGGAAGATGATAAGTCCTTCAGGCCATCC
ATAAGACTTTCGGGCAGGATGTTTTCACATGTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAA
TCTAAAATTGAAAATTTTGAAAAGTAAGAAAACAATTTTCAAAGTTTATTACATAGTAAACTATT
TCCAAAATTGATAAGTCCTTCAGGCCATCAATAAGTCTTTCGAGCATGATGAGTAAATCATTCGG
GTCATATATAAGCCTTTCAAGAAAGTTGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGCAA
GATGTTTTCACATATTTTTAGAAAAATGAGAATTGTTTTATTTAAATCTAAAAATTGAAATTTTT
GAAAACTAAGAAAACAATTCTTAAAGGTTT
Found at i:1452308 original size:162 final size:163
Alignment explanation
Indices: 1452112--1452436 Score: 456
Period size: 162 Copynumber: 2.0 Consensus size: 163
1452102 AATTATTTAC
* * * *
1452112 AAAGTTTCTTACCTCGTAAATTGTTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATAAATATGT
1 AAAGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATAAATATGT
* ** * * *
1452177 CGAGCATGATGACTAAATCCTTTGAGTCATCTTTAAGCTTTTCGAGCAAGATGATAAG-TCTTCT
66 CGAGCATGATGACTAAATCATTCAAGTCATATATAAGCCTTTCGAGCAAGATGATAAGTTCTT-T
*
1452241 GGGCCATCCATAAGACCTTCGGGCATGAT-TTTT
130 GAGCCATCCATAAGACCTTCGGGCATGATGTTTT
* * *
1452274 AAAGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATAAGTCTTT
1 AAAGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATAAATATGT
* *
1452339 CGAGCATGATGAGTAAATCATTCAAGTCATATATAAGCCTTTCGAGGAAGATGATAAGTTCTTTG
66 CGAGCATGATGACTAAATCATTCAAGTCATATATAAGCCTTTCGAGCAAGATGATAAGTTCTTTG
* * *
1452404 AGCCATCCATAAGTCTTTTGGGCATGATGTTTT
131 AGCCATCCATAAGACCTTCGGGCATGATGTTTT
1452437 CATATCTTTT
Statistics
Matches: 142, Mismatches: 19, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
162 134 0.94
163 8 0.06
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34
Consensus pattern (163 bp):
AAAGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATAAATATGT
CGAGCATGATGACTAAATCATTCAAGTCATATATAAGCCTTTCGAGCAAGATGATAAGTTCTTTG
AGCCATCCATAAGACCTTCGGGCATGATGTTTT
Found at i:1452654 original size:406 final size:405
Alignment explanation
Indices: 1451863--1452660 Score: 1000
Period size: 406 Copynumber: 2.0 Consensus size: 405
1451853 TAAGAAAACA
* *
1451863 ATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTCGGGCCATCACTAA
1 ATTTTCAAAGATTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTCGGGCCATCAATAA
* **
1451928 GTCTTTCGAGCATGATATGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGAAAGATGATAAGT
66 GTCTTTCGAGCATGATATGTAAATCATTCAAGTCATATATAAGCCTTTCGAGAAAGATGATAAGT
* *
1451993 CCTTCAGGCCATCCCTAAGACCTCTGGCAGGATGTTTTCACAGGTTTTTTCGAAAAATGAGAAAA
131 CCTTCAGGCCATCCATAAGACCTCTGGCAGGATGTTTTCACAGCTTTTTTCGAAAAATGAGAAAA
* * * * * *
1452058 GTTTCTCATTTACATCTAAAATTTAAATTTTTGAATAGTAAGAAAATTATTTACAAAGTTTCTTA
196 GTTTCTCATTTAAATCTAAAAATGAAAATTTTGAAAAGTAAGAAAATTATTTACAAAGTTTATTA
* *** *
1452123 CCTCGTAAATTGTTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATAAATATGTCGAGCATGATG
261 CCTAGTAAACCATTTCCAAAATTGGTAAGTCCTTCAGGCCATCAATAAATATGTCGAGCATGATG
* * * ** * * *
1452188 ACTAAATCCTTTGAGTCATCTTTAAGCTTTTCGAGCAAGATGATAAGTCTTCTGGGCCATCCATA
326 ACTAAATCATTGGAGTCATATACAAGCCTTTCAAGCAAGATGATAAGTCTTCTAGGCCATCCATA
1452253 AGACCTTCGGGCATG
391 AGACCTTCGGGCATG
* * *
1452268 ATTTTTAAAGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATAA
1 ATTTTCAAAGATTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTCGGGCCATCAATAA
*
1452333 GTCTTTCGAGCATGATGA-GTAAATCATTCAAGTCATATATAAGCCTTTCGAGGAAGATGATAAG
66 GTCTTTCGAGCATGAT-ATGTAAATCATTCAAGTCATATATAAGCCTTTCGAGAAAGATGATAAG
* * * * * * * *
1452397 TTCTT-TGAGCCATCCATAAGTCTTTTGGGCATGATGTTTTCATATCTTTTTTCGAAAAATGAGA
130 TCCTTCAG-GCCATCCATAAGACCTCT-GGCAGGATGTTTTCACAGCTTTTTTCGAAAAATGAGA
1452461 AAAGTTTCTCATTTAAATCTAAAAATGAAAATTTTGAAAAGTAAGAAAACATT-TTT-CAAAGTT
193 AAAGTTTCTCATTTAAATCTAAAAATGAAAATTTTGAAAAGTAAG-AAA-ATTATTTACAAAGTT
* * * ** * * *
1452524 TATTACCTAGTAAACCATTTTCGAAATTGGTAAG-CCTTTTAGGCCATCAATAGGTCTTTCGGGC
256 TATTACCTAGTAAACCATTTCCAAAATTGGTAAGTCC-TTCAGGCCATCAATAAATATGTCGAGC
* * * *
1452588 CTGATGAGTATATCATTCGGA-TCATATACAAGCCTTTCAAG-AATGTTGATAAGTCCTTC-AGG
320 ATGATGACTAAATCATT-GGAGTCATATACAAGCCTTTCAAGCAA-GATGATAAGT-CTTCTAGG
*
1452650 CCATCTATAAG
382 CCATCCATAAG
1452661 TTCTTCGAGC
Statistics
Matches: 333, Mismatches: 51, Indels: 17
0.83 0.13 0.04
Matches are distributed among these distances:
404 1 0.00
405 140 0.42
406 177 0.53
407 12 0.04
408 3 0.01
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (405 bp):
ATTTTCAAAGATTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTCGGGCCATCAATAA
GTCTTTCGAGCATGATATGTAAATCATTCAAGTCATATATAAGCCTTTCGAGAAAGATGATAAGT
CCTTCAGGCCATCCATAAGACCTCTGGCAGGATGTTTTCACAGCTTTTTTCGAAAAATGAGAAAA
GTTTCTCATTTAAATCTAAAAATGAAAATTTTGAAAAGTAAGAAAATTATTTACAAAGTTTATTA
CCTAGTAAACCATTTCCAAAATTGGTAAGTCCTTCAGGCCATCAATAAATATGTCGAGCATGATG
ACTAAATCATTGGAGTCATATACAAGCCTTTCAAGCAAGATGATAAGTCTTCTAGGCCATCCATA
AGACCTTCGGGCATG
Found at i:1453182 original size:484 final size:484
Alignment explanation
Indices: 1452267--1454598 Score: 2943
Period size: 484 Copynumber: 4.8 Consensus size: 484
1452257 CTTCGGGCAT
*
1452267 GATTTTTAAAGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATA
1 GATTCTTAAAGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATA
* **
1452332 AGTCTTTCGAGCATGATGAGTAAATCATTCAAGTCATATATAAGCCTTTCGAGGAAGATGATAAG
66 AGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGGAAGATGATAAG
* * * *
1452397 TTCTTTGAGCCATCCATAAGTCTTTTGGGCATGATGTTTTCATATCTTTTTTCGAAAAATGAGAA
131 TCCTTCGAGCCATCCATAAGTCTTTTGGGCAGGATGTTTTCACAT-TTTTTTCGAAAAATGAGAA
*
1452462 AAGTTTCTCATTTAAATCTAAAAATGAAAATTTTGAAAAGTAAGAAAACATTTTTCAAAGTTTAT
195 AAGTTTCTCATTTAAATCTAAAAATGAAAATTTTGAAAAGTAAGAAAACAATTTTCAAAGTTTAT
* * * * * *
1452527 TACCTAGTAAACCATTTTCGAAATTGGTAAGCCTTTTAGGCCATCAATAGGTCTTTCGGGCCTGA
260 TACCTAGTAAACTATTTCCGAAATTGGTAAGTCTTTCAGGCCATCAATAAGTCTTTCGGGCATGA
* * * *
1452592 TGAGTATATCATTCGGATCATATACAAGCCTTTCAAGAATGTTGATAAGTCCTTCAGGCCATCTA
325 TGAGTATATCATTCGGGTCATATATAAGCCTTTCAAGAAAGTTGATAAGTCCTTCAGGCCATCCA
*
1452657 TAAGTTCTTCGAGCAAGATGTTTTCACATATTTTCCGAAAAATGAGAATTTTTTATTTAAATCTA
390 TAAGTTCTTCGAGCAAGATGTTTTCACATATTTTTCGAAAAATGAGAATTTTTTATTTAAATCTA
* *
1452722 AAAATTGAAATTTTTGTAACGTAAGAAAAT
455 AAAATTGAAATTTTTGAAACGTAAGAAAAC
* *
1452752 GATTCTTAAAGATTCTAACCTAGTAAACTATTTCCAAAATTGGTAAGGCCTTCGGGCCATCAATA
1 GATTCTTAAAGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATA
**
1452817 AGTCTTTCGAGCATGATGAGTAAATCCTTCAAGTCATATATAAGCCTTTCGAGGAAGATGATAAG
66 AGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGGAAGATGATAAG
* * **
1452882 TTCTTCGAGCCATCCATAAGTCTTTTGGGCATGATGTTTTCATTTTTTTTTCGAAAAATGAGAAA
131 TCCTTCGAGCCATCCATAAGTCTTTTGGGCAGGATGTTTTCACATTTTTTTCGAAAAATGAGAAA
*
1452947 AGTTTCTAATTTAAATCTAAAAATGAAAATTTTGAAAAGTAAGAAAACAATTTTCAAAGTTTATT
196 AGTTTCTCATTTAAATCTAAAAATGAAAATTTTGAAAAGTAAGAAAACAATTTTCAAAGTTTATT
* ** * * * *
1453012 ACATAGTAAACTATTTTTGAAATTGGTAAGTCTTTCATGCCATCAGTAGGTCTTTCGGGCGTGAT
261 ACCTAGTAAACTATTTCCGAAATTGGTAAGTCTTTCAGGCCATCAATAAGTCTTTCGGGCATGAT
* * * * *
1453077 GTGTATATCATTCGGGTTATATATAAGACTTTCAAGAATGTTGATAAGTCCTTCGGGCCATCCAT
326 GAGTATATCATTCGGGTCATATATAAGCCTTTCAAGAAAGTTGATAAGTCCTTCAGGCCATCCAT
1453142 AAGTTCTTCGAGCAAGATGTTTTCACATATTTTTCGAAAAATGA-AATTTTTTTATTTAAATCTA
391 AAGTTCTTCGAGCAAGATGTTTTCACATATTTTTCGAAAAATGAGAA-TTTTTTATTTAAATCTA
*
1453206 AAAATTTAAATTTTTGAAACGTAAGAAAAC
455 AAAATTGAAATTTTTGAAACGTAAGAAAAC
* * * * * * *
1453236 GATTCTTAATGTTTTTTACCCAGTAAACTATTTCCAAAATTGGTAAGTCCTTTGGG-CAACTAGT
1 GATTCTTAAAGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATC-AAT
* * * *
1453300 AAGTCTTTCGTGCATGATGAGTAAATCGTTCGGGTCATCTATAAGCCTTTTGAGGAAGATGATAA
65 AAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGGAAGATGATAA
* * * * **
1453365 GTCCTTC-AGGCCATCTATAAGACTTTCGGGTAGGATGTTTTCACAAGTTTTTCGAAAAATGAGA
130 GTCCTTCGA-GCCATCCATAAGTCTTTTGGGCAGGATGTTTTCACATTTTTTTCGAAAAATGAGA
* *
1453429 AAA-TATTCTCATTGAAATCTAAAAATTGAAAATTTGGAAAAGTAAGAAAACAATTTTCAAAGTT
194 AAAGT-TTCTCATTTAAATCTAAAAA-TGAAAATTTTGAAAAGTAAGAAAACAATTTTCAAAGTT
* * * *
1453493 TATTACATAGTAAACTATTTCCGAAATTAGTAAGTCTTTCAGGCCATCAGTAAGTCTTTCGTGCA
257 TATTACCTAGTAAACTATTTCCGAAATTGGTAAGTCTTTCAGGCCATCAATAAGTCTTTCGGGCA
* *
1453558 TGATGCA-TATATCATTTGGGTCATATATAAGCCTTTCAAGAAAGTTGATAAGTCCTTCGGGCCA
322 TGATG-AGTATATCATTCGGGTCATATATAAGCCTTTCAAGAAAGTTGATAAGTCCTTCAGGCCA
* *
1453622 TCCATAAGTTCTTCGGGCAATATGTTTTCACATA-TTTTCTGAAAAATGAGAATTTTTTATTTAA
386 TCCATAAGTTCTTCGAGCAAGATGTTTTCACATATTTTTC-GAAAAATGAGAATTTTTTATTTAA
*
1453686 ATCTAAAAATTGAAATTTTTGAAAAC-T-AGGAAAC
450 ATCTAAAAATTGAAATTTTTG-AAACGTAAGAAAAC
* * * *** * *
1453720 GATTCTTAAAGGTTTTTACCTAGTAAATTATTTCCAAAATTGGTAAGTCCTTTAAGCCATTAGTA
1 GATTCTTAAAGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATA
* * * ** *
1453785 AGTCTTTCGAGCATGATGTGTAAATCCTTCGGGTCATCTATATGCCTTTTAAGCAAGATGATAAG
66 AGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGGAAGATGATAAG
* * * * *
1453850 TCCTTCGGGCCATCCGTAAGATC-TTCGGGCA-AATTGTTTTCACATGTTTTTCGAAAAATGAGA
131 TCCTTCGAGCCATCCATAAG-TCTTTTGGGCAGGA-TGTTTTCACATTTTTTTCGAAAAATGAGA
** * * ** *
1453913 AAAAATTCTCTTTTAAATCTTAAAATCG-AAATTTTAGAAAAGTAAGAAAACGTTTTTCAAAGTG
194 AAAGTTTCTCATTTAAATCTAAAAAT-GAAAATTTT-GAAAAGTAAGAAAACAATTTTCAAAGTT
* * * *
1453977 TCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCAGGCCATCAATAAGTCTTTCGAGCA
257 TATTACCTAGTAAACTATTTCCGAAATTGGTAAGTCTTTCAGGCCATCAATAAGTCTTTCGGGCA
* * * * * *
1454042 TGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGAAAGATT-ATAAGTCTTTAAAGCCA
322 TGATGAGTATATCATTCGGGTCATATATAAGCCTTTCAAGAAAG-TTGATAAGTCCTTCAGGCCA
* ** * * *
1454106 TACATAAGACCTTC-AGGCAGGATGTTTTCACATGTTTTTAGAAAAATGAGAAATGTTTTTCATT
386 TCCATAAGTTCTTCGA-GCAAGATGTTTTCACATATTTTTCGAAAAATGAG-AAT-TTTTT-ATT
* *
1454170 TAAATCTGAAAATTGAAATTTTTGAAAAGTAAGAAAAC
447 TAAATCTAAAAATTGAAATTTTTGAAACGTAAGAAAAC
* * * * * *
1454208 AATT-TTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTCTGGCCATCACT
1 GATTCTT-AAAGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAAT
* *
1454272 AAGTCTTTCGAGCATGATGTGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGAAAGATGATAA
65 AAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGGAAGATGATAA
* * * * *
1454337 GTCCTTC-AGGCCATCCCTAAGACCTCT-GGCAGGATGTTTTCACAGGTTTTTTCGAAAAATGAG
130 GTCCTTCGA-GCCATCCATAAGTCTTTTGGGCAGGATGTTTTCACA-TTTTTTTCGAAAAATGAG
* * * * * **
1454400 AAAAGTTTCTCATTTACATCTAAAATTTAAATTTTTGAATAGTAAGAAAATTATTTTCAAAGTTT
193 AAAAGTTTCTCATTTAAATCTAAAAATGAAAATTTTGAAAAGTAAGAAAACAATTTTCAAAGTTT
* * * * * * * * * *
1454465 CTTACCTCGTAAATTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATAAATATGTCGAGCAT
258 ATTACCTAGTAAACTATTTCCGAAATTGGTAAGTCTTTCAGGCCATCAATAAGTCTTTCGGGCAT
* * * * * * * * * *
1454530 GATGACTAAATCCTTTGAGTCATCTTTAAGCTTTTCAAGCAAGATGATAAGT-CTTCTAGGCCAT
323 GATGAGTATATCATTCGGGTCATATATAAGCCTTTCAAGAAAGTTGATAAGTCCTTC-AGGCCAT
1454594 CCATA
387 CCATA
1454599 TGACCTTCAG
Statistics
Matches: 1633, Mismatches: 181, Indels: 64
0.87 0.10 0.03
Matches are distributed among these distances:
483 16 0.01
484 834 0.51
485 408 0.25
486 17 0.01
487 178 0.11
488 180 0.11
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (484 bp):
GATTCTTAAAGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATA
AGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGGAAGATGATAAG
TCCTTCGAGCCATCCATAAGTCTTTTGGGCAGGATGTTTTCACATTTTTTTCGAAAAATGAGAAA
AGTTTCTCATTTAAATCTAAAAATGAAAATTTTGAAAAGTAAGAAAACAATTTTCAAAGTTTATT
ACCTAGTAAACTATTTCCGAAATTGGTAAGTCTTTCAGGCCATCAATAAGTCTTTCGGGCATGAT
GAGTATATCATTCGGGTCATATATAAGCCTTTCAAGAAAGTTGATAAGTCCTTCAGGCCATCCAT
AAGTTCTTCGAGCAAGATGTTTTCACATATTTTTCGAAAAATGAGAATTTTTTATTTAAATCTAA
AAATTGAAATTTTTGAAACGTAAGAAAAC
Found at i:1453649 original size:244 final size:242
Alignment explanation
Indices: 1452268--1454598 Score: 2509
Period size: 244 Copynumber: 9.6 Consensus size: 242
1452258 TTCGGGCATG
* * * * *
1452268 ATTTTTAAAGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATAA
1 ATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCAGGCCATCAATAA
* ** * *
1452333 GTCTTTCGAGCATGATGAGTAAATCATTCAAGTCATATATAAGCCTTTCGAGGAAGATGATAAGT
66 GTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCAAGAAAGATGATAAGT
* * * * * **
1452398 TCTT-TGAGCCATCCATAAGTCTTTTGGGCATGATGTTTTCATATCTTTTTTCGAAAAATGAGAA
131 CCTTCAG-GCCATCCATAAGTC-TTCGGGCAAGATGTTTTCACA-AGTTTTTCGAAAAATGAGAA
*
1452462 AAGTTTCTCATTTAAATCTAAAAA-TGAAAATTTTGAAAAGTAAGAAAACA
193 AA-TTTCTCATTTAAATCTAAAAATTGAAATTTTTGAAAAGTAAGAAAACA
* * * * * * *
1452512 TTTTTCAAAGTTTATTACCTAGTAAACCATTTTCGAAATTGGTAAGCCTTTTAGGCCATCAATAG
1 ATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCAGGCCATCAATAA
* * * * * * * *
1452577 GTCTTTCGGGCCTGATGAGTATATCATTCGGATCATATACAAGCCTTTCAAGAATGTTGATAAGT
66 GTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCAAGAAAGATGATAAGT
* * *
1452642 CCTTCAGGCCATCTATAAGTTCTTCGAGCAAGATGTTTTCACATA-TTTTCCGAAAAATGAG--A
131 CCTTCAGGCCATCCATAAG-TCTTCGGGCAAGATGTTTTCACA-AGTTTTTCGAAAAATGAGAAA
* * * * **
1452704 ATTTTTTATTTAAATCTAAAAATTGAAATTTTTGTAACGTAAGAAAATG
194 ATTTCTCATTTAAATCTAAAAATTGAAATTTTTGAAAAGTAAGAAAACA
* * * * * *
1452753 ATTCTT-AAAGATTCTAACCTAGTAAACTATTTCCAAAATTGGTAAGGCCTTCGGGCCATCAATA
1 ATT-TTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCAGGCCATCAATA
** * *
1452817 AGTCTTTCGAGCATGATGAGTAAATCCTTCAAGTCATATATAAGCCTTTCGAGGAAGATGATAAG
65 AGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCAAGAAAGATGATAAG
* * * ****
1452882 TTCTTC-GAGCCATCCATAAGTCTTTTGGGCATGATGTTTTCATTTTTTTTTCGAAAAATGAGAA
130 TCCTTCAG-GCCATCCATAAGTC-TTCGGGCAAGATGTTTTCACAAGTTTTTCGAAAAATGAGAA
* *
1452946 AAGTTTCTAATTTAAATCTAAAAA-TGAAAATTTTGAAAAGTAAGAAAACA
193 AA-TTTCTCATTTAAATCTAAAAATTGAAATTTTTGAAAAGTAAGAAAACA
* *** * * *
1452996 ATTTTCAAAGTTTATTACATAGTAAACTATTTTTGAAATTGGTAAGTCTTTCATGCCATCAGTAG
1 ATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCAGGCCATCAATAA
* * * * * * * * *
1453061 GTCTTTCGGGCGTGATGTGTATATCATTCGGGTTATATATAAGACTTTCAAGAATGTTGATAAGT
66 GTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCAAGAAAGATGATAAGT
* *
1453126 CCTTCGGGCCATCCATAAGTTCTTCGAGCAAGATGTTTTCACATA-TTTTTCGAAAAAT--GAAA
131 CCTTCAGGCCATCCATAAG-TCTTCGGGCAAGATGTTTTCACA-AGTTTTTCGAAAAATGAGAAA
* * * * * *
1453188 TTTTTTTATTTAAATCTAAAAATTTAAATTTTTGAAACGTAAGAAAACG
194 ATTTCTCATTTAAATCTAAAAATTGAAATTTTTGAAAAGTAAGAAAACA
* * * * * *
1453237 ATTCTT-AATGTTTTTTACCCAGTAAACTATTTCCAAAATTGGTAAGTCCTTT--GGGCAACTAG
1 ATT-TTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGT-CTTTCAGGCCATC-AA
* * * ** *
1453299 TAAGTCTTTCGTGCATGATGAGTAAATCGTTCGGGTCATCTATAAGCCTTTTGAGGAAGATGATA
63 TAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCAAGAAAGATGATA
* * * *
1453364 AGTCCTTCAGGCCATCTATAAGACTTTCGGGTAGGATGTTTTCACAAGTTTTTCGAAAAATGAGA
128 AGTCCTTCAGGCCATCCATAAGTC-TTCGGGCAAGATGTTTTCACAAGTTTTTCGAAAAATGAGA
* * *
1453429 AAATATTCTCATTGAAATCTAAAAATTGAAAATTTGGAAAAGTAAGAAAACA
192 AAAT-TTCTCATTTAAATCTAAAAATTGAAATTTTTGAAAAGTAAGAAAACA
* * * *
1453481 ATTTTCAAAGTTTATTACATAGTAAACTATTTCCGAAATTAGTAAGTCTTTCAGGCCATCAGTAA
1 ATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCAGGCCATCAATAA
* * * * *
1453546 GTCTTTCGTGCATGATGCA-TATATCATTTGGGTCATATATAAGCCTTTCAAGAAAGTTGATAAG
66 GTCTTTCGAGCATGATG-AGTAAATCCTTCGGGTCATATATAAGCCTTTCAAGAAAGATGATAAG
* *
1453610 TCCTTCGGGCCATCCATAAGTTCTTCGGGCAATATGTTTTCAC-A-TATTTTCTGAAAAATGAG-
130 TCCTTCAGGCCATCCATAAG-TCTTCGGGCAAGATGTTTTCACAAGT-TTTTC-GAAAAATGAGA
* * * * *
1453672 -AATTTTTTATTTAAATCTAAAAATTGAAATTTTTGAAAACT-AGGAAACG
192 AAATTTCTCATTTAAATCTAAAAATTGAAATTTTTGAAAAGTAAGAAAACA
* * * *
1453721 ATTCTT-AAAGGTTT-TTACCTAGTAAATTATTTCCAAAATTGGTAAGTCCTTT-AAGCCATTAG
1 ATT-TTCAAA-GTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGT-CTTTCAGGCCATCAA
* * * * *
1453783 TAAGTCTTTCGAGCATGATGTGTAAATCCTTCGGGTCATCTATATGCCTTTTAAGCAAGATGATA
63 TAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCAAGAAAGATGATA
* * *
1453848 AGTCCTTCGGGCCATCCGTAAGATCTTCGGGCAA-ATTGTTTTCACATGTTTTTCGAAAAATGAG
128 AGTCCTTCAGGCCATCCATAAG-TCTTCGGGCAAGA-TGTTTTCACAAGTTTTTCGAAAAATGAG
* * * * * *
1453912 AAAAAATTCTCTTTTAAATCTTAAAATCGAAATTTTAGAAAAGTAAGAAAACG
191 -AAAATTTCTCATTTAAATCTAAAAATTGAAATTTTTGAAAAGTAAGAAAACA
* * * *
1453965 TTTTTCAAAGTGTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCAGGCCATCAATAA
1 ATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCAGGCCATCAATAA
* *
1454030 GTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGAAAGATTATAAGT
66 GTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCAAGAAAGATGATAAGT
* * * * * * * * *
1454095 CTTTAAAGCCATACATAAGACCTTCAGGCAGGATGTTTTCACATGTTTTTAGAAAAATGAGAAAT
131 CCTTCAGGCCATCCATAAG-TCTTCGGGCAAGATGTTTTCACAAGTTTTTCGAAAAATGAGAAA-
* * *
1454160 GTTTTTCATTTAAATCTGAAAATTGAAATTTTTGAAAAGTAAGAAAACA
194 ATTTCTCATTTAAATCTAAAAATTGAAATTTTTGAAAAGTAAGAAAACA
* * *
1454209 ATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTCTGGCCATCACTAA
1 ATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCAGGCCATCAATAA
* *
1454274 GTCTTTCGAGCATGATGTGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGAAAGATGATAAGT
66 GTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCAAGAAAGATGATAAGT
* * * * * *
1454339 CCTTCAGGCCATCCCTAAGACCTCTGGCAGGATGTTTTCACAGGTTTTTTCGAAAAATGAGAAAA
131 CCTTCAGGCCATCCATAAGTCTTCGGGCAAGATGTTTTCACAAG-TTTTTCGAAAAATGAGAAAA
* * * **
1454404 GTTTCTCATTTACATCT-AAAATTTAAATTTTTGAATAGTAAGAAAATT
195 -TTTCTCATTTAAATCTAAAAATTGAAATTTTTGAAAAGTAAGAAAACA
* * * * *
1454452 ATTTTCAAAGTTTCTTACCTCGTAAATTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATAA
1 ATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCAGGCCATCAATAA
* * * * * * * * * *
1454517 ATATGTCGAGCATGATGACTAAATCCTTTGAGTCATCTTTAAGCTTTTCAAGCAAGATGATAAGT
66 GTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCAAGAAAGATGATAAGT
1454582 -CTTCTAGGCCATCCATA
131 CCTTC-AGGCCATCCATA
1454599 TGACCTTCAG
Statistics
Matches: 1746, Mismatches: 292, Indels: 99
0.82 0.14 0.05
Matches are distributed among these distances:
239 1 0.00
240 201 0.12
241 386 0.22
242 19 0.01
243 416 0.24
244 712 0.41
245 11 0.01
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (242 bp):
ATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCAGGCCATCAATAA
GTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCAAGAAAGATGATAAGT
CCTTCAGGCCATCCATAAGTCTTCGGGCAAGATGTTTTCACAAGTTTTTCGAAAAATGAGAAAAT
TTCTCATTTAAATCTAAAAATTGAAATTTTTGAAAAGTAAGAAAACA
Found at i:1454033 original size:728 final size:722
Alignment explanation
Indices: 1452267--1454598 Score: 2624
Period size: 728 Copynumber: 3.2 Consensus size: 722
1452257 CTTCGGGCAT
* * * *
1452267 GATTTTTAAAGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATA
1 GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCAGGCCATCAATA
* * *
1452332 AGTCTTTCGAGCATGATGAGTAAATCATTCAAGTCATATATAAGCCTTTCGAGGAAGATGATAAG
66 AGTCTTTCGAGCATGATGAGTAAATCATTCGAGTCATATATAAGCCTTTCAAGCAAGATGATAAG
* * * * * * *
1452397 TTCTTTGAGCCATCCATAAGTCTTTTGGGCATGATGTTTTCATATCTTTTTTCGAAAAATGAGAA
131 TCCTTCGGGCCATCCATAAGTC-TTCGGGCA-AATGTTTTCACAT-ATTTTTCGAAAAATGAGAA
* * *
1452462 AAGTTTCTCATTTAAATCTAAAAATGAAAATTTTGAAAAGTAAGAAAACATTTTTCAAAGTTTAT
193 AAATTTCTCTTTTAAATCTAAAAATG-AAATTTTGAAAAGTAAGAAAACGTTTTTCAAAGTTTAT
* * * * * *
1452527 TACCTAGTAAACCATTTTCGAAATTGGTAAG-CCTTTTAGGCCATCAATAGGTCTTTCGGGCCTG
257 TACCTAGTAAACTATTTCCAAAATTGGTAAGTCC--TTAGGCCATCAATAAGTCTTTCGAGCATG
* * * * * *
1452591 ATGAGTATATCATTCGGATCATATACAAGCC-TTTCAAGAATGTTGATAAGTCCTTCAGGCCATC
320 ATGAGTAAATCATTCGGGTCATATATAAGCCTTTTGAGGAA-GATGATAAGTCCTTCAGGCCATC
* * * * *
1452655 TATAAG-TTCTTCGAGCAAGATGTTTTCACATA-TTTTCCGAAAAATGAG-AATTTTTTATTTAA
384 TATAAGACT-TTCGGGCAGGATGTTTTCACA-AGTTTTTCGAAAAATGAGAAATTTTTCATTTAA
* * ** * * *
1452717 ATCTAAAAATTGAAATTTTTGTAACGTAAGAAAATGATTCTT-AAAGATTCTAACCTAGTAAACT
447 ATCTAAAAATTGAAATTTTTGAAAAGTAAGAAAACAATT-TTCAAAGTTTATTACCTAGTAAACT
* * *
1452781 ATTTCCAAAATTGGTAAGGCCTTCGGGCCATCAATAAGTCTTTCGAGCATGATGAGTAAATCCTT
511 ATTTCCAAAATTGGTAAGTCATTCAGGCCATCAATAAGTCTTTCGAGCATGATGA-TAAATCCTT
** * * * *
1452846 CAAGTCATATATAAGCCTTTCGAGGAAGATGATAAGTTCTTCGAGCCATCCATAAGTCTTTTGGG
575 CGGGTCATATATAAGCCTTTCGAGAAAGATGATAAGTCCTTCGGGCCATCCATAAGTC-TTCGGG
* *
1452911 C-ATGATGTTTTCA-TTTTTTTTTCGAAAAATGAGAAAAGTTTCTAATTTAAATCTAAAAA-TGA
639 CAAT-ATGTTTTCACATTTTTTCT-GAAAAATGAG-AAAGTTTCTAATTTAAATCTAAAAATTGA
*
1452973 AAATTTTGAAAAGTAAGAAAAC
701 AATTTTTGAAAAGTAAGAAAAC
* * *** * * *
1452995 AATTTTCAAAGTTTATTACATAGTAAACTATTTTTGAAATTGGTAAGTCTTTCATGCCATCAGTA
1 GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCAGGCCATCAATA
* * * * * * * * *
1453060 GGTCTTTCGGGCGTGATGTGTATATCATTCGGGTTATATATAAGACTTTCAAG-AATGTTGATAA
66 AGTCTTTCGAGCATGATGAGTAAATCATTCGAGTCATATATAAGCCTTTCAAGCAA-GATGATAA
*
1453124 GTCCTTCGGGCCATCCATAAGTTCTTCGAGCAAGATGTTTTCACATATTTTTCGAAAAAT--G--
130 GTCCTTCGGGCCATCCATAAG-TCTTCGGGCAA-ATGTTTTCACATATTTTTCGAAAAATGAGAA
* * * * * *
1453185 AAATTTTTTTATTTAAATCTAAAAATTTAAATTTTTGAAACGTAAGAAAACGATTCTT-AATGTT
193 AAATTTCTCT-TTTAAATCTAAAAA-TGAAA-TTTTGAAAAGTAAGAAAACG-TTTTTCAAAGTT
* * * * * * *
1453249 TTTTACCCAGTAAACTATTTCCAAAATTGGTAAGTCCTTTGGGCAACTAGTAAGTCTTTCGTGCA
254 TATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTAGGCCATC-AATAAGTCTTTCGAGCA
* *
1453314 TGATGAGTAAATCGTTCGGGTCATCTATAAGCCTTTTGAGGAAGATGATAAGTCCTTCAGGCCAT
318 TGATGAGTAAATCATTCGGGTCATATATAAGCCTTTTGAGGAAGATGATAAGTCCTTCAGGCCAT
* * *
1453379 CTATAAGACTTTCGGGTAGGATGTTTTCACAAGTTTTTCGAAAAATGAGAAAATATTCTCATTGA
383 CTATAAGACTTTCGGGCAGGATGTTTTCACAAGTTTTTCGAAAAATGAG-AAAT-TTTTCATTTA
* * *
1453444 AATCTAAAAATTGAAAATTTGGAAAAGTAAGAAAACAATTTTCAAAGTTTATTACATAGTAAACT
446 AATCTAAAAATTGAAATTTTTGAAAAGTAAGAAAACAATTTTCAAAGTTTATTACCTAGTAAACT
* * * * * * *
1453509 ATTTCCGAAATTAGTAAGTCTTTCAGGCCATCAGTAAGTCTTTCGTGCATGATGCATATATCATT
511 ATTTCCAAAATTGGTAAGTCATTCAGGCCATCAATAAGTCTTTCGAGCATGATG-ATAAATCCTT
* * *
1453574 TGGGTCATATATAAGCCTTTCAAGAAAGTTGATAAGTCCTTCGGGCCATCCATAAGTTCTTCGGG
575 CGGGTCATATATAAGCCTTTCGAGAAAGATGATAAGTCCTTCGGGCCATCCATAAG-TCTTCGGG
* * *
1453639 CAATATGTTTTCACATATTTTCTGAAAAATGAG-AA-TTTTTTATTTAAATCTAAAAATTGAAAT
639 CAATATGTTTTCACATTTTTTCTGAAAAATGAGAAAGTTTCTAATTTAAATCTAAAAATTGAAAT
* *
1453702 TTTTGAAAACT-AGGAAAC
704 TTTTGAAAAGTAAGAAAAC
* * * * *
1453720 GATTCTT-AAAGGTTT-TTACCTAGTAAATTATTTCCAAAATTGGTAAGTCCTTTAAGCCATTAG
1 GATT-TTCAAA-GTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCAGGCCATCAA
* * * * * *
1453783 TAAGTCTTTCGAGCATGATGTGTAAATCCTTCGGGTCATCTATATGCCTTTTAAGCAAGATGATA
64 TAAGTCTTTCGAGCATGATGAGTAAATCATTCGAGTCATATATAAGCCTTTCAAGCAAGATGATA
* *
1453848 AGTCCTTCGGGCCATCCGTAAGATCTTCGGGCAAATTGTTTTCACATGTTTTTCGAAAAATGAGA
129 AGTCCTTCGGGCCATCCATAAG-TCTTCGGGCAAA-TGTTTTCACATATTTTTCGAAAAATGAGA
* * *
1453913 AAAAATTCTCTTTTAAATCTTAAAATCGAAATTTTAGAAAAGTAAGAAAACGTTTTTCAAAGTGT
192 AAAATTTCTCTTTTAAATCTAAAAAT-GAAATTTT-GAAAAGTAAGAAAACGTTTTTCAAAGTTT
*
1453978 CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCAGGCCATCAATAAGTCTTTCGAGCAT
255 ATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTT-AGGCCATCAATAAGTCTTTCGAGCAT
* * * * * * *
1454043 GATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGAAAGATTATAAGTCTTTAAAGCCATA
319 GATGAGTAAATCATTCGGGTCATATATAAGCCTTTTGAGGAAGATGATAAGTCCTTCAGGCCAT-
* * * *
1454108 C-ATAAGACCTTCAGGCAGGATGTTTTCACATGTTTTTAGAAAAATGAGAAATGTTTTTCATTTA
383 CTATAAGACTTTCGGGCAGGATGTTTTCACAAGTTTTTCGAAAAATGAGAAA--TTTTTCATTTA
*
1454172 AATCTGAAAATTGAAATTTTTGAAAAGTAAGAAAACAATTTTCAAAGTTTATTACCTAGTAAACT
446 AATCTAAAAATTGAAATTTTTGAAAAGTAAGAAAACAATTTTCAAAGTTTATTACCTAGTAAACT
* * *
1454237 ATTTCCAAAATTGGTAAGTCATTCTGGCCATCACTAAGTCTTTCGAGCATGATGTGTAAATCCTT
511 ATTTCCAAAATTGGTAAGTCATTCAGGCCATCAATAAGTCTTTCGAGCATGATG-ATAAATCCTT
* * * * *
1454302 CGGGTCATATATAAGCCTTTCGAGAAAGATGATAAGTCCTTCAGGCCATCCCTAAGACCTCTGGC
575 CGGGTCATATATAAGCCTTTCGAGAAAGATGATAAGTCCTTCGGGCCATCCATAAGTCTTCGGGC
** * * *
1454367 AGGATGTTTTCACAGGTTTTTTC-GAAAAATGAGAAAAGTTTCTCATTTACATCT-AAAATTTAA
640 AATATGTTTTCACA--TTTTTTCTGAAAAATGAG-AAAGTTTCTAATTTAAATCTAAAAATTGAA
* *
1454430 ATTTTTGAATAGTAAGAAAAT
702 ATTTTTGAAAAGTAAGAAAAC
* * * * *
1454451 TATTTTCAAAGTTTCTTACCTCGTAAATTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATA
1 GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCAGGCCATCAATA
* * * * * * * * *
1454516 AATATGTCGAGCATGATGACTAAATCCTTTGAGTCATCTTTAAGCTTTTCAAGCAAGATGATAAG
66 AGTCTTTCGAGCATGATGAGTAAATCATTCGAGTCATATATAAGCCTTTCAAGCAAGATGATAAG
*
1454581 T-CTTCTAGGCCATCCATA
131 TCCTTC-GGGCCATCCATA
1454599 TGACCTTCAG
Statistics
Matches: 1346, Mismatches: 213, Indels: 87
0.82 0.13 0.05
Matches are distributed among these distances:
723 6 0.00
724 26 0.02
725 332 0.25
726 39 0.03
727 51 0.04
728 695 0.52
729 33 0.02
730 31 0.02
731 133 0.10
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (722 bp):
GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCAGGCCATCAATA
AGTCTTTCGAGCATGATGAGTAAATCATTCGAGTCATATATAAGCCTTTCAAGCAAGATGATAAG
TCCTTCGGGCCATCCATAAGTCTTCGGGCAAATGTTTTCACATATTTTTCGAAAAATGAGAAAAA
TTTCTCTTTTAAATCTAAAAATGAAATTTTGAAAAGTAAGAAAACGTTTTTCAAAGTTTATTACC
TAGTAAACTATTTCCAAAATTGGTAAGTCCTTAGGCCATCAATAAGTCTTTCGAGCATGATGAGT
AAATCATTCGGGTCATATATAAGCCTTTTGAGGAAGATGATAAGTCCTTCAGGCCATCTATAAGA
CTTTCGGGCAGGATGTTTTCACAAGTTTTTCGAAAAATGAGAAATTTTTCATTTAAATCTAAAAA
TTGAAATTTTTGAAAAGTAAGAAAACAATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAA
TTGGTAAGTCATTCAGGCCATCAATAAGTCTTTCGAGCATGATGATAAATCCTTCGGGTCATATA
TAAGCCTTTCGAGAAAGATGATAAGTCCTTCGGGCCATCCATAAGTCTTCGGGCAATATGTTTTC
ACATTTTTTCTGAAAAATGAGAAAGTTTCTAATTTAAATCTAAAAATTGAAATTTTTGAAAAGTA
AGAAAAC
Found at i:1454738 original size:162 final size:162
Alignment explanation
Indices: 1454463--1454760 Score: 420
Period size: 162 Copynumber: 1.8 Consensus size: 162
1454453 TTTTCAAAGT
* * *
1454463 TTCTTACCTCGTAAATTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATAAATATGTCGAGC
1 TTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCAATCAATAAATATGTCGAGC
* ** * * *
1454528 ATGATGACTAAATCCTTTGAGTCATCTTTAAGCTTTTCAAGCAAGATGATAAG-TCTTCTAGGCC
66 ATGATGACTAAATCATTCAAGTCATATATAAGCTTTTCAAGCAAGATGATAAGTTCTTCGA-GCC
1454592 ATCCATATGACCTTCAGGCATGATGTTCAATGA
130 ATCCATATGACCTTCAGGCATGATGTTCAATGA
* * * *
1454625 TTCTTACCTAGTAAACTATTTCTAAAATTGGTAAGTCCTTCGGGCAATCAATAAGTCTTTCGAGC
1 TTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCAATCAATAAATATGTCGAGC
* * *
1454690 ATGATGAGTAAATCATTCAAGTCATATATAAGCCTTTT-GAGGAAGATGATAAGTTCTTCGAGCC
66 ATGATGACTAAATCATTCAAGTCATATATAAG-CTTTTCAAGCAAGATGATAAGTTCTTCGAGCC
1454754 ATCCATA
130 ATCCATA
1454761 AGTCTTATGG
Statistics
Matches: 118, Mismatches: 16, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
162 107 0.91
163 11 0.09
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (162 bp):
TTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCAATCAATAAATATGTCGAGC
ATGATGACTAAATCATTCAAGTCATATATAAGCTTTTCAAGCAAGATGATAAGTTCTTCGAGCCA
TCCATATGACCTTCAGGCATGATGTTCAATGA
Found at i:1455000 original size:406 final size:405
Alignment explanation
Indices: 1454223--1454988 Score: 1016
Period size: 406 Copynumber: 1.9 Consensus size: 405
1454213 TCAAAGTTTA
* * *
1454223 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTCTGGCCATCACTAAGTCTTTCGAGCATG
1 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTCGGGCAATCAATAAGTCTTTCGAGCATG
* * **
1454288 ATGTGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGAAAGATGATAAGTCCTTCAGGCCATCC
66 ATGAGTAAATCATTCAAGTCATATATAAGCCTTTCGAGAAAGATGATAAGTCCTTCAGGCCATCC
* * * * *
1454353 CTAAGACCTCTGGCAGGATGTTTTCACAGGTTTTTTCGAAAAATGAGAAAAGTTTCTCATTTACA
131 ATAAGACCTATGGCAGGATGTTTTCACAGCTTTTTTCGAAAAAAGAGAAAAGTTTCTCATTTAAA
* * * * ** * * *
1454418 TCTAAAATTTAAATTTTTGAATAGTAAGAAAATTATTTTCAAAGTTTCTTACCTCGTAAATTATT
196 TCTAAAAATGAAAATTTTGAAAAGTAAGAAAACAATTTTCAAAGTTTATTACCTAGTAAACTATT
* * *
1454483 TCCAAAATTGGTAAGTCCTTCGGGCCATCAATAAATATGTCGAGCATGATGACTAAATCCTTTGA
261 TCCAAAATTGGTAAGTCCTTCAGGCCATCAATAAATATGTCGAGCATGATGACTAAATCATTCGA
* *
1454548 GTCATCTTTAAGCTTTTCAAGCAAGATGATAAGTCTTCTAGGCCATCCATATGACCTTCAGGCAT
326 GTCATATATAAGCTTTTCAAGCAAGATGATAAGTCTTCTAGGCCATCCATATGACCTTCAGGCAT
1454613 GATGTTCAATGATTC
391 GATGTTCAATGATTC
* *
1454628 TTACCTAGTAAACTATTTCTAAAATTGGTAAGTCCTTCGGGCAATCAATAAGTCTTTCGAGCATG
1 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTCGGGCAATCAATAAGTCTTTCGAGCATG
* * *
1454693 ATGAGTAAATCATTCAAGTCATATATAAGCCTTTTGAGGAAGATGATAAGTTCTTC-GAGCCATC
66 ATGAGTAAATCATTCAAGTCATATATAAGCCTTTCGAGAAAGATGATAAGTCCTTCAG-GCCATC
* * * * * *
1454757 CATAAGTCTTATGGGCATGATGTTTTCATATCTTTTTTTGAAAAAAGAGAAAAGTTTCTCATTTA
130 CATAAGACCTAT-GGCAGGATGTTTTCACAGCTTTTTTCGAAAAAAGAGAAAAGTTTCTCATTTA
1454822 AATCTAAAAATGAAAATTTTGAAAAGTAAGAAAACAATTTTCAAAGTTTATTACCTAGTAAACTA
194 AATCTAAAAATGAAAATTTTGAAAAGTAAGAAAACAATTTTCAAAGTTTATTACCTAGTAAACTA
* * * * ** * * * * * *
1454887 TTTTCGAAATTGGTAAGTCTTTCATGCCATCAATAGGTCTTTCGGGCGTGATGAGTATATCATTC
259 TTTCCAAAATTGGTAAGTCCTTCAGGCCATCAATAAATATGTCGAGCATGATGACTAAATCATTC
* *
1454952 GGGTCATATATAAGAC-TTTCAAG-AATGTTGATAAGTC
324 GAGTCATATATAAG-CTTTTCAAGCAA-GATGATAAGTC
1454989 CTTCGGGCCA
Statistics
Matches: 306, Mismatches: 51, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
404 1 0.00
405 125 0.41
406 179 0.58
407 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (405 bp):
TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTCGGGCAATCAATAAGTCTTTCGAGCATG
ATGAGTAAATCATTCAAGTCATATATAAGCCTTTCGAGAAAGATGATAAGTCCTTCAGGCCATCC
ATAAGACCTATGGCAGGATGTTTTCACAGCTTTTTTCGAAAAAAGAGAAAAGTTTCTCATTTAAA
TCTAAAAATGAAAATTTTGAAAAGTAAGAAAACAATTTTCAAAGTTTATTACCTAGTAAACTATT
TCCAAAATTGGTAAGTCCTTCAGGCCATCAATAAATATGTCGAGCATGATGACTAAATCATTCGA
GTCATATATAAGCTTTTCAAGCAAGATGATAAGTCTTCTAGGCCATCCATATGACCTTCAGGCAT
GATGTTCAATGATTC
Found at i:1455380 original size:243 final size:244
Alignment explanation
Indices: 1454625--1455981 Score: 1402
Period size: 243 Copynumber: 5.6 Consensus size: 244
1454615 TGTTCAATGA
* * *
1454625 TTCTTACCTAGTAAACTATTTCTAAAATTGGTAAGTCCTTCGGGCAATCAATAAGTCTTTCGAGC
1 TTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTTGGGCCATCAATAAGTCTTTCGAGC
* ** * *
1454690 ATGATGAGTAAATCATTCAAGTCATATATAAGCCTTTTGAGGAAGATGATAAGTTCTTCGAGCCA
66 ATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTTGAGGAAGATGATAAGTCCTTCGGGCCA
* * * * * * *
1454755 TCCATAAG-TCTTATGGGCATGATGTTTTCATATCTTTTTTTGAAAAAAGAGAAAAGTTTCTCAT
131 TCCATAAGATCTT-CGGGCAGGATGTTTTCACAT-GTTTTTCGAAAAATGAGAAAATTTTCTCAT
* * * *
1454819 TTAAA-TCTAAAAATGAAAATTTTGAAAAGTAAGAAAACAATTTTCAAAGT
194 TTAAATTTTAAAATTGAAATTTTTGAAAAGTAAGAAAACGATTTTCAAAGT
* * * ** * *
1454869 TTATTACCTAGTAAACTATTTTCGAAATTGGTAAGT-CTTTCATGCCATCAATAGGTCTTTCGGG
1 TTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTT-GGGCCATCAATAAGTCTTTCGAG
* * * * * * *
1454933 CGTGATGAGTATATCATTCGGGTCATATATAAGAC-TTTCAAGAATGTTGATAAGTCCTTCGGGC
65 CATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTTGAGGAA-GATGATAAGTCCTTCGGGC
* * * ** * * * *
1454997 CATCTATAAGTTCTTCGAGCAAAATGTTTTCACATATTTTTCGAAAAAT--G-AATTTTTTTTAT
129 CATCCATAAGATCTTCGGGCAGGATGTTTTCACATGTTTTTCGAAAAATGAGAAAATTTTCTCAT
* * * *
1455059 TTAAATCTAAAAATTGAAATTTTTGAAACGTAAGAAAACGATACTT-AAAGT
194 TTAAATTTTAAAATTGAAATTTTTGAAAAGTAAGAAAACGAT-TTTCAAAGT
* * *
1455110 TGT-TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTTGGGCAATCAGTAAAT-TTTCTG-
1 T-TCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTTGGGCCATCAATAAGTCTTTC-GA
* * *
1455172 GCATGATGAGTAAATCGTTCGGGTCATCTATAAGCCTTTTGAGGAAGATGATACGTCCTTCGGGC
64 GCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTTGAGGAAGATGATAAGTCCTTCGGGC
* * *
1455237 CATCCGTAAGATCTTCGGGCA-AATTATTTTCACATGTTTTTCGAAAAATGAGAAAATTTTCTCA
129 CATCCATAAGATCTTCGGGCAGGA-TGTTTTCACATGTTTTTCGAAAAATGAGAAAATTTTCTCA
* * *
1455301 TTTAAATTTTAAAATTGAAATTTTTAAAAATTAAGAAAACGTTTTTCAAAGT
193 TTTAAATTTTAAAATTGAAATTTTTGAAAAGTAAGAAAACGATTTTCAAAGT
* *
1455353 TTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTTGGGCCATCACTAAGTCTTTCGAGC
1 TTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTTGGGCCATCAATAAGTCTTTCGAGC
* * * * **
1455418 ATGATGTA-TAAATCCTTCGGGTATTATATATAAACCTTTCGAGAAAGATGATAAGTCCTTCAAG
66 ATGATG-AGTAAATCCTTCGGG--TCATATATAAGCCTTTTGAGGAAGATGATAAGTCCTTCGGG
* * * * * * * *
1455482 CCTTCCATAAGACCTTCAGGTAGGATGTTTTCACATGTTTTTAGAAAAATGAGAAATGTTTTTTT
128 CCATCCATAAGATCTTCGGGCAGGATGTTTTCACATGTTTTTCGAAAAATGAGAAA-ATTTTCTC
* * * *
1455547 ATTTAAATCTGATAATTGAAATTTTTGAAAAGTAAGAAAACAATTTTCAAAGT
192 ATTTAAATTTTAAAATTGAAATTTTTGAAAAGTAAGAAAACGATTTTCAAAGT
* * ** * *
1455600 TTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTCAGACCATCACTAAGTCTTTCGAGC
1 TTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTTGGGCCATCAATAAGTCTTTCGAGC
* * * * * * *
1455665 ATGATGTGTAAATCCTTCGGGTCATCTGTAAGGCTTTCGAGCAAGATGATAAGTCATTCGGGCCA
66 ATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTTGAGGAAGATGATAAGTCCTTCGGGCCA
* * ** * * * *
1455730 TCCCTAAG-TCCTCTAGTAGGATGTTTTCACAGGTTTTTTTGAAAAATGAGAAAAGTTTCTCATT
131 TCCATAAGATCTTCGGGCAGGATGTTTTCACATG-TTTTTCGAAAAATGAGAAAATTTTCTCATT
* * * * *
1455794 TACA-TCTAAAATTTAAATTTTTGAATAGTAAGAAAATGATTTTCAAAGT
195 TAAATTTTAAAATTGAAATTTTTGAAAAGTAAGAAAACGATTTTCAAAGT
* * * * *
1455843 TTCTTACCTCGTAAATTATTTCCAAAATTGGTATGT--TTCTCGGGCCATCAATAAGTATGTCGA
1 TTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTT-T-GGGCCATCAATAAGTCTTTCGA
* * * * *
1455906 GCATGATGACTAAATCCTTCGAGTCATCTATAAG-ATTTTCGAGCAAGATGATAAGTCCTAT-GG
64 GCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTT-GAGGAAGATGATAAGTCCT-TCGG
1455969 GCCATCCATAAGA
127 GCCATCCATAAGA
1455982 CCTCCAGGCA
Statistics
Matches: 926, Mismatches: 158, Indels: 58
0.81 0.14 0.05
Matches are distributed among these distances:
239 2 0.00
240 105 0.11
241 86 0.09
242 14 0.02
243 269 0.29
244 175 0.19
245 64 0.07
246 79 0.09
247 132 0.14
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.35
Consensus pattern (244 bp):
TTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTTGGGCCATCAATAAGTCTTTCGAGC
ATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTTGAGGAAGATGATAAGTCCTTCGGGCCA
TCCATAAGATCTTCGGGCAGGATGTTTTCACATGTTTTTCGAAAAATGAGAAAATTTTCTCATTT
AAATTTTAAAATTGAAATTTTTGAAAAGTAAGAAAACGATTTTCAAAGT
Found at i:1455806 original size:490 final size:482
Alignment explanation
Indices: 1454628--1455984 Score: 1611
Period size: 490 Copynumber: 2.8 Consensus size: 482
1454618 TCAATGATTC
*
1454628 TTACCTAGTAAACTATTTCTAAAATTGGTAAGTCCTTCGGGCAATCAATAAGTCTTTCGAGCATG
1 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCAATCAATAAGTCTTTCGAGCATG
** * *
1454693 ATGAGTAAATCATTCAAGTCATATATAAGCCTTTTGAGGAAGATGATAAGTTCTTCGAGCCATCC
66 ATGAGTAAATCATTCGGGTCATCTATAAGCCTTTTGAGGAAGATGATAAG-TCTTCGGGCCATCC
* * * *
1454758 ATAAGTCTTATGGGCATGATGTTTTCATATCTTTTTTTGAAAAAAGAGAAAAGTTTCTCATTTAA
130 ATAAGTCTTCT-GGCA-GATGTTTTCACATGTTTTTTTGAAAAATGAGAAAAGTTTCTCATTTAA
* * * *
1454823 ATCTAAAAATGAAAATTTTGAAAAGTAAGAAAACAATTTTCAAAGTTTATTACCTAGTAAACTAT
193 ATCTAAAATTGAAATTTTTGAAAAGTAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTAT
* * ** * * * * * *
1454888 TTTCGAAATTGGTAAGTCTTTCATGCCATCAATAGGTCTTTCGGGCGTGATGAGTATATCATTCG
258 TTCCAAAATTGGTAAGTCTTTCGGGCCATCAATAAGTCTTTCGAGCATGATGACTAAATCCTTCG
* * * ** * **
1454953 GGTCATATATAAGACTTTCAAGAATGTTGATAAGTCCTTCGGGCCATCTATAAGTTCTTCGAGCA
323 GGTCATATATAAGACTTTCGAGAAAGATGATAAGTCCTTCAAGCCATCCATAAGACCTTCGAGCA
*
1455018 AAATGTTTTCACATATTTTTCGAAAAATGAATTTTTTTTATTTAAATCTAAAAATTGAAATTTTT
388 AAATGTTTTCACATATTTTTAGAAAAATGAATTTTTTTTATTTAAATCTAAAAATTGAAATTTTT
* *
1455083 GAAACGTAAGAAAACGATACTTAAAGTTGT
453 GAAAAGTAAGAAAACAATACTTAAAGTTGT
* * *
1455113 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTTGGGCAATCAGTAAAT-TTTCTG-GCAT
1 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCAATCAATAAGTCTTTC-GAGCAT
* *
1455176 GATGAGTAAATCGTTCGGGTCATCTATAAGCCTTTTGAGGAAGATGATACGTCCTTCGGGCCATC
65 GATGAGTAAATCATTCGGGTCATCTATAAGCCTTTTGAGGAAGATGATAAGT-CTTCGGGCCATC
* * * * * *
1455241 CGTAAGATCTTCGGGCAAATTATTTTCACATG-TTTTTCGAAAAATGAGAAAATTTTCTCATTTA
129 CATAAG-TCTTCTGGCAGA-TGTTTTCACATGTTTTTTTGAAAAATGAGAAAAGTTTCTCATTTA
* * * *
1455305 AATTTTAAAATTGAAATTTTTAAAAATTAAGAAAACGTTTTTCAAAGTTTCTTACCTAGTAAACT
192 AA-TCTAAAATTGAAATTTTTGAAAAGTAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACT
*
1455370 ATTTCCAAAATTGGTAAGTCATTT-GGGCCATCACTAAGTCTTTCGAGCATGATGTA-TAAATCC
256 ATTTCCAAAATTGGTAAGTC-TTTCGGGCCATCAATAAGTCTTTCGAGCATGATG-ACTAAATCC
* *
1455433 TTCGGGT-ATTATATATAAACCTTTCGAGAAAGATGATAAGTCCTTCAAGCCTTCCATAAGACCT
319 TTCGGGTCA-TATATA-AGA-CTTTCGAGAAAGATGATAAGTCCTTCAAGCCATCCATAAGACCT
* ** * * *
1455497 TC-AGGTAGGATGTTTTCACATGTTTTTAGAAAAATGAGAAATGTTTTTTTATTTAAATCTGATA
381 TCGA-GCAAAATGTTTTCACATATTTTTAGAAAAAT--G-AAT-TTTTTTTATTTAAATCTAAAA
*
1455561 ATTGAAATTTTTGAAAAGTAAGAAAACAAT-TTTCAAAGTT-T
441 ATTGAAATTTTTGAAAAGTAAGAAAACAATACTT-AAAGTTGT
* * * * *
1455602 ATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTCAGACCATCACTAAGTCTTTCGAGCAT
1 -TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCAATCAATAAGTCTTTCGAGCAT
* * * * * *
1455667 GATGTGTAAATCCTTCGGGTCATCTGTAAGGCTTTCGAGCAAGATGATAAGTCATTCGGGCCATC
65 GATGAGTAAATCATTCGGGTCATCTATAAGCCTTTTGAGGAAGATGATAAGTC-TTCGGGCCATC
* * * * * *
1455732 CCTAAGTCCTCTAGTAGGATGTTTTCACAGGTTTTTTTGAAAAATGAGAAAAGTTTCTCATTTAC
129 CATAAGTCTTCTGGCA-GATGTTTTCACATGTTTTTTTGAAAAATGAGAAAAGTTTCTCATTTAA
* * * * *
1455797 ATCTAAAATTTAAATTTTTGAATAGTAAGAAAATGATTTTCAAAGTTTCTTACCTCGTAAATTAT
193 ATCTAAAATTGAAATTTTTGAAAAGTAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTAT
* * *
1455862 TTCCAAAATTGGTATGT-TTCTCGGGCCATCAATAAGTATGTCGAGCATGATGACTAAATCCTTC
258 TTCCAAAATTGGTAAGTCTT-TCGGGCCATCAATAAGTCTTTCGAGCATGATGACTAAATCCTTC
* * * * **
1455926 GAGTCATCTATAAGATTTTCGAGCAAGATGATAAGTCCTAT-GGGCCATCCATAAGACCT
322 GGGTCATATATAAGACTTTCGAGAAAGATGATAAGTCCT-TCAAGCCATCCATAAGACCT
1455985 CCAGGCATGA
Statistics
Matches: 741, Mismatches: 104, Indels: 51
0.83 0.12 0.06
Matches are distributed among these distances:
483 34 0.05
484 197 0.27
485 61 0.08
486 63 0.09
488 40 0.05
489 11 0.01
490 233 0.31
491 102 0.14
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.35
Consensus pattern (482 bp):
TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCAATCAATAAGTCTTTCGAGCATG
ATGAGTAAATCATTCGGGTCATCTATAAGCCTTTTGAGGAAGATGATAAGTCTTCGGGCCATCCA
TAAGTCTTCTGGCAGATGTTTTCACATGTTTTTTTGAAAAATGAGAAAAGTTTCTCATTTAAATC
TAAAATTGAAATTTTTGAAAAGTAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTC
CAAAATTGGTAAGTCTTTCGGGCCATCAATAAGTCTTTCGAGCATGATGACTAAATCCTTCGGGT
CATATATAAGACTTTCGAGAAAGATGATAAGTCCTTCAAGCCATCCATAAGACCTTCGAGCAAAA
TGTTTTCACATATTTTTAGAAAAATGAATTTTTTTTATTTAAATCTAAAAATTGAAATTTTTGAA
AAGTAAGAAAACAATACTTAAAGTTGT
Found at i:1456157 original size:162 final size:162
Alignment explanation
Indices: 1455829--1456142 Score: 416
Period size: 162 Copynumber: 1.9 Consensus size: 162
1455819 TAGTAAGAAA
* * * * * *
1455829 ATGATTTTCAAAGTTTCTTACCTCGTAAATTATTTCCAAAATTGGTATGTTTCTCGGGCCATCAA
1 ATGATTTTCAAAGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTCTCGGGCAATCAA
* * * * *
1455894 TAAGTATGTCGAGCATGATGACTAAATCCTTCGAGTCATCTATAAGATTTTCGAGCAAGATGATA
66 TAAGTATGTCGAGCATGATGACTAAACCCTTCGAGTCATATAAAAGACTTTCAAGCAAGATGATA
1455959 AGTCCTATGGGCCATCCATAAGACCTCCAGGC
131 AGTCCTATGGGCCATCCATAAGACCTCCAGGC
1455991 ATGATTTTCAAAGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTC-CTTCGGGCAATCA
1 ATGATTTTCAAAGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTC-TCGGGCAATCA
* * * * * * *
1456055 ATAAGTCTTTCGGGCATGATGAGTAAACCCTTCGGGTCATATAAAAGCCTTTCAAGGAAGATGAT
65 ATAAGTATGTCGAGCATGATGACTAAACCCTTCGAGTCATATAAAAGACTTTCAAGCAAGATGAT
* *
1456120 AAGTTCT-TCGGGCCATTCATAAG
130 AAGTCCTAT-GGGCCATCCATAAG
1456143 TCTTTTGGGC
Statistics
Matches: 130, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
161 2 0.02
162 128 0.98
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (162 bp):
ATGATTTTCAAAGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTCTCGGGCAATCAA
TAAGTATGTCGAGCATGATGACTAAACCCTTCGAGTCATATAAAAGACTTTCAAGCAAGATGATA
AGTCCTATGGGCCATCCATAAGACCTCCAGGC
Found at i:1456552 original size:243 final size:244
Alignment explanation
Indices: 1455991--1457859 Score: 1965
Period size: 243 Copynumber: 7.7 Consensus size: 244
1455981 ACCTCCAGGC
* * *
1455991 ATGATTTTCAAAGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCAATCAA
1 ATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAG
* * * * * *
1456056 TAAGTCTTTCGGGCATGATGAGTAAACCCTTCGGGTCATATAAAAGCCTTTCAAGGAAGATGATA
66 TAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTTATATATAAGCCTTTCAAGCAATATGATA
* * * * *
1456121 AGTTCTTCGGGCCATTCATAA-GTCTTTTGGGCATGATGTTTTCACATCTTTTTTTGAAAAATGA
131 AGTCCTTCGGGCCATCCATAAGGTC-TTCGGGCAGGATGTTTTCACAT-ATTTTTTGAAAAATGA
** *
1456185 GAAAAGTTTCTCATTTAAATCTTGTAATTGAAAATTTTGAAAAGTAAGAAA
194 GAAAAGTTTCTCATTTAAATCTTAAAATTGAAATTTTTGAAAAGTAAGAAA
* *
1456236 ATAATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAG
1 ATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAG
* * * * * * *
1456301 TTAGTCTTTCGAGAATGACGAGTAAATCATTCGGGTTATATATGAGCCTTTCAAGCAATATAAGA
66 TAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTTATATATAAGCCTTTCAAGCAATATGATA
* * * * * *
1456366 AGTCCGTCAGGTCATCCACAAGGTCTTCGGGCAGGATGCTTCCACATATTTTTTGAAAAATGAGA
131 AGTCCTTCGGGCCATCCATAAGGTCTTCGGGCAGGATGTTTTCACATATTTTTTGAAAAATGAGA
* * *
1456431 AAAGTTTCTCATTTAAATCTAAAAATTAAAAATTTTGAAAAGTAA-AAA
196 AAAGTTTCTCATTTAAATCTTAAAATTGAAATTTTTGAAAAGTAAGAAA
* * * * * * *
1456479 ACGATTTTTAAAGTTTATTTCCTAGTAAATTATTAT-CAAAATTTGTAAGTCATTCGGGCCATCA
1 ATGATTTTCAAAGTTTCTTACCTAGTAAACTATT-TCCAAAATTGGTAAGTCCTTCGGGCCATCA
* * ** *
1456543 GTAAGTCTTTTGAGCATGATGAGTAAGTCCTTCGGGTTATATATGTGCCTTTCAAGCAATATAAT
65 GTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTTATATATAAGCCTTTCAAGCAATATGAT
** * * * *
1456608 AAGTTTTTCGGGTCATCCATAAGGTCTTCGGGCAAGATGTTTTCACATTTTTTTTAAAAAATGGA
130 AAGTCCTTCGGGCCATCCATAAGGTCTTCGGGCAGGATGTTTTCACATATTTTTTGAAAAAT-GA
* * * * * *
1456673 TAAAAATATCTCATTTAAATATGAATATTGAAATTTTTGAAAAGTAAGAAA
194 GAAAAGTTTCTCATTTAAATCTTAAAATTGAAATTTTTGAAAAGTAAGAAA
* * * * * * *
1456724 ATGA-TTCCAAATTTTCGTACCTATTAAACAATTTCTAAAATTGGTAAGTCCTTC-GACCAATCA
1 ATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCC-ATCA
* * * * * * *
1456787 GTAAGTCTTTTGAGCTTGATGAGTAAATCCTTTGGGTTATCTATTAGTC-TTCTGAGC-ATGATG
65 GTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTTATATATAAGCCTTTC-AAGCAAT-ATG
* ** *
1456850 ATAAGTCCCTCGGGCCATCCATAAGACCTTCAGGCAGGATGTTTTCACATATTTTTTTGAAAAAT
128 ATAAGTCCTTCGGGCCATCCATAAGGTCTTCGGGCAGGATGTTTTCACATA-TTTTTTGAAAAAT
* * * * * *
1456915 AAGAAAAATTTCTCATTTAAATCTGAAAATTTAAAATGTTGAAAAGTAAGAAA
192 GAGAAAAGTTTCTCATTTAAATCTTAAAATTGAAATTTTTGAAAAGTAAGAAA
* * * *
1456968 ACGATTCTCAAAGTTT-TTACCTAGTATACTATTAT-CAAAATTGGTAAGTCCTTCGGGTCATCA
1 ATGATTTTCAAAGTTTCTTACCTAGTAAACTATT-TCCAAAATTGGTAAGTCCTTCGGGCCATCA
* * * *
1457031 GTAAGACTTTTC-TGCAAGATGAGTAAATTCTTCGGGTTATATATAAGCCTTTCAAGCAATATGA
65 GTAAGTC-TTTCGAGCATGATGAGTAAATCCTTCGGGTTATATATAAGCCTTTCAAGCAATATGA
* * * * * *
1457095 TAAGTCCTTGGGGTCATCCATAAGCTCTTCGTGCAGGATGTTTTCACATATTTTATGAAAAATAA
129 TAAGTCCTTCGGGCCATCCATAAGGTCTTCGGGCAGGATGTTTTCACATATTTTTTGAAAAATGA
* *
1457160 GAAAAATATCTCATTTAAATCTTAAAATTGAAATTTTTGAAAAGTAAGAAA
194 GAAAAGTTTCTCATTTAAATCTTAAAATTGAAATTTTTGAAAAGTAAGAAA
** * * *
1457211 ATGATTCCCAAAGTTTCGTACCTAGTAAACTATTTCTAAAATTGGTAAGTCCTTC-AGCCAATCA
1 ATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCC-ATCA
* * * * * * * * *
1457275 GTAAGTCTTTTGAGCATGATGTGTAAATCCATCGGATCATCTATAAGCCTTTCGAGCAAGAGGAT
65 GTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTTATATATAAGCCTTTCAAGCAATATGAT
* * * ** * * ** *
1457340 AAGTCCTTTGAGCCATCCCTAAGAAC-T-GTGGTAGGATATTTTCACAGGTTTTTTCAAAAAATG
130 AAGTCCTTCGGGCCATCCATAAGGTCTTCG-GGCAGGATGTTTTCACATATTTTTT-GAAAAATG
* *
1457403 AGAAAAGTTTCTCATTTACATC-TAAAATTGAAATTTTTGAAAAGTAAAAAA
193 AGAAAAGTTTCTCATTTAAATCTTAAAATTGAAATTTTTGAAAAGTAAGAAA
* * * * *
1457454 ATGATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTCCGACCATCAA
1 ATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAG
* * * * * * * *
1457519 TAAGTCTTTCGAGTATGAAGTGTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGTAAGATGATA
66 TAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTTATATATAAGCCTTTCAAGCAATATGATA
* * * * * * *
1457584 AGTCCTTCGAGCCATCCCTAA-GACCTCTGGTAGGATGTTTTCACATATGTTTTTGAAAAATAAG
131 AGTCCTTCGGGCCATCCATAAGGTCTTCGGGCAGGATGTTTTCACATAT-TTTTTGAAAAATGAG
* * *
1457648 AAAAGTTTCTCATTTACAT-TTAAAATTTAAATTTTTGAATAGTAAGAAA
195 AAAAGTTTCTCATTTAAATCTTAAAATTGAAATTTTTGAAAAGTAAGAAA
* * * * * *
1457697 ATGAGTTTCAAAGTTTCTTACCTCGGAAATTATTTCCAAAATTGGTAAGTCATTCGGGCCATCAA
1 ATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAG
* * * * * * * * *
1457762 TAAGTCTGTCGAGCATGATGACTAAATCCATCGAGTCATCTATAA-TCTTTCCGAGCAAAATGAT
66 TAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTTATATATAAGCCTTT-CAAGCAATATGAT
** **
1457826 AAGT-CTTATAGGCCATCCATAAGACCTTCGGGCA
130 AAGTCCTT-CGGGCCATCCATAAGGTCTTCGGGCA
1457860 TGATTTTCAA
Statistics
Matches: 1362, Mismatches: 233, Indels: 59
0.82 0.14 0.04
Matches are distributed among these distances:
242 10 0.01
243 627 0.46
244 540 0.40
245 182 0.13
246 3 0.00
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.34
Consensus pattern (244 bp):
ATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAG
TAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTTATATATAAGCCTTTCAAGCAATATGATA
AGTCCTTCGGGCCATCCATAAGGTCTTCGGGCAGGATGTTTTCACATATTTTTTGAAAAATGAGA
AAAGTTTCTCATTTAAATCTTAAAATTGAAATTTTTGAAAAGTAAGAAA
Found at i:1456929 original size:488 final size:485
Alignment explanation
Indices: 1455993--1457856 Score: 1989
Period size: 488 Copynumber: 3.8 Consensus size: 485
1455983 CTCCAGGCAT
* * * *
1455993 GATTTTCAAAGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCAATCAATA
1 GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTCGGGCCATCAATA
* * * *
1456058 AGTCTTTCGGGCATGATGAGTAAACCCTTCGGGTCATATAAAAGCCTTTCAAGGAAGATGATAAG
66 AGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCAAGCAAGATGATAAG
* * * * * *
1456123 TTCTTCGGGCCATTCATAAGTCTTTTGGGCATGATGTTTTCACATCTTTTTTTGAAAAATGAGAA
131 TCCTTCGGGCCATCCATAAGTC-TTCGGGCAGGATGTTTTCACATATTTTTTTGAAAAATAAGAA
* * * * * * *
1456188 AAGTTTCTCATTTAAATCTTG-TAATTGAAAATTTTGAAAAGTAAGAAAATAATTTTCAAAGTTT
195 AAATATCTCATTTAAA--TTGAAAATTGAAATTTTTGAAAAGTAAGAAAATGAGTTCCAAAGTTT
** * * *
1456252 ATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTTAGTCTTTCGAGAAT
258 CGTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGACCATCAGTAAGTCTTTCGAGCAT
* * * * * * * * * *
1456317 GACGAGTAAATCATTCGGGTTATATATGAGCCTTTCAAGCAAT-ATAAGAAGTCCGTCAGGTCAT
323 GATGAGTAAATCCTTCGGGTTATCTATAAGCCTTTCGAGC-ATGATGATAAGTCCCTCGGGCCAT
* ** * *
1456381 CCACAAGGTCTTCGGGCAGGATGCTTCCACATA-TTTTTTGAAAAATGAGAAAAGTTTCTCATTT
387 CCATAAGAACTTC-GGCAGGATGTTTTCACATATTTTTTTGAAAAATGAGAAAAGTTTCTCATTT
1456445 AAATCTAAAAATTAAAAATTTTGAAAAGTAAAAAAC
451 AAATCT-AAAATTAAAAATTTTGAAAAGTAAAAAAC
* * * * *
1456481 GATTTTTAAAGTTTATTTCCTAGTAAATTATTAT-CAAAATTTGTAAGTCATTCGGGCCATCAGT
1 GATTTTCAAAGTTTATTACCTAGTAAACTATT-TCCAAAATTGGTAAGTCATTCGGGCCATCAAT
* * * ** * *
1456545 AAGTCTTTTGAGCATGATGAGTAAGTCCTTCGGGTTATATATGTGCCTTTCAAGCAATATAATAA
65 AAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCAAGCAAGATGATAA
** * * * * *
1456610 GTTTTTCGGGTCATCCATAAGGTCTTCGGGCAAGATGTTTTCACAT-TTTTTTTAAAAAATGGAT
130 GTCCTTCGGGCCATCCATAA-GTCTTCGGGCAGGATGTTTTCACATATTTTTTTGAAAAAT-AAG
* *
1456674 AAAAATATCTCATTTAAATATGAATATTGAAATTTTTGAAAAGTAAGAAAATGA-TTCCAAATTT
193 AAAAATATCTCATTTAAAT-TGAAAATTGAAATTTTTGAAAAGTAAGAAAATGAGTTCCAAAGTT
* * * *
1456738 TCGTACCTATTAAACAATTTCTAAAATTGGTAAGTCCTTC-GACCAATCAGTAAGTCTTTTGAGC
257 TCGTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGACC-ATCAGTAAGTCTTTCGAGC
* * * *
1456802 TTGATGAGTAAATCCTTTGGGTTATCTATTAGTC-TTCTGAGCATGATGATAAGTCCCTCGGGCC
321 ATGATGAGTAAATCCTTCGGGTTATCTATAAGCCTTTC-GAGCATGATGATAAGTCCCTCGGGCC
* * *
1456866 ATCCATAAGACCTTCAGGCAGGATGTTTTCACATATTTTTTTGAAAAATAAGAAAAATTTCTCAT
385 ATCCATAAGAACTTC-GGCAGGATGTTTTCACATATTTTTTTGAAAAATGAGAAAAGTTTCTCAT
* *
1456931 TTAAATCTGAAAATTTAAAATGTTGAAAAGTAAGAAAAC
449 TTAAATCT-AAAATTAAAAATTTTGAAAAGTAA-AAAAC
* * * * *
1456970 GATTCTCAAAGTTT-TTACCTAGTATACTATTAT-CAAAATTGGTAAGTCCTTCGGGTCATCAGT
1 GATTTTCAAAGTTTATTACCTAGTAAACTATT-TCCAAAATTGGTAAGTCATTCGGGCCATCAAT
* * * * * *
1457033 AAGACTTTTC-TGCAAGATGAGTAAATTCTTCGGGTTATATATAAGCCTTTCAAGCAATATGATA
65 AAGTC-TTTCGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCAAGCAAGATGATA
* * * *
1457097 AGTCCTTGGGGTCATCCATAAGCTCTTCGTGCAGGATGTTTTCACATA-TTTTATGAAAAATAAG
129 AGTCCTTCGGGCCATCCATAAG-TCTTCGGGCAGGATGTTTTCACATATTTTTTTGAAAAATAAG
*
1457161 AAAAATATCTCATTTAAATCTTAAAATTGAAATTTTTGAAAAGTAAGAAAATGA-TTCCCAAAGT
193 AAAAATATCTCATTTAAAT-TGAAAATTGAAATTTTTGAAAAGTAAGAAAATGAGTT-CCAAAGT
* * *
1457225 TTCGTACCTAGTAAACTATTTCTAAAATTGGTAAGTCCTTCAG-CCAATCAGTAAGTCTTTTGAG
256 TTCGTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGACC-ATCAGTAAGTCTTTCGAG
* * * * * * * * *
1457289 CATGATGTGTAAATCCATCGGATCATCTATAAGCCTTTCGAGCAAGAGGATAAGTCCTTTGAGCC
320 CATGATGAGTAAATCCTTCGGGTTATCTATAAGCCTTTCGAGCATGATGATAAGTCCCTCGGGCC
* * * ** **
1457354 ATCCCTAAGAACTGT-GGTAGGATATTTTCACAGGTTTTTTCAAAAAATGAGAAAAGTTTCTCAT
385 ATCCATAAGAACT-TCGGCAGGATGTTTTCACATATTTTTTTGAAAAATGAGAAAAGTTTCTCAT
* * * *
1457418 TTACATCTAAAATTGAAATTTTTGAAAAGTAAAAAAAT
449 TTAAATCTAAAATTAAAAATTTTGAAAAGT-AAAAAAC
* *
1457456 GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTCCGACCATCAATA
1 GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTCGGGCCATCAATA
* * * * * *
1457521 AGTCTTTCGAGTATGAAGTGTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGTAAGATGATAAG
66 AGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCAAGCAAGATGATAAG
* * * * * * *
1457586 TCCTTCGAGCCATCCCTAAGACCTCTGGTAGGATGTTTTCACATATGTTTTTGAAAAATAAGAAA
131 TCCTTCGGGCCATCCATAAGTCTTCGGGCAGGATGTTTTCACATATTTTTTTGAAAAATAAGAAA
* * * * * * * *
1457651 AGTTTCTCATTTACATTTAAAATTTAAATTTTTGAATAGTAAGAAAATGAGTTTCAAAGTTTCTT
196 AATATCTCATTTAAATTGAAAATTGAAATTTTTGAAAAGTAAGAAAATGAGTTCCAAAGTTTCGT
* * * * * * *
1457716 ACCTCGGAAATTATTTCCAAAATTGGTAAGTCATTCGGGCCATCAATAAGTCTGTCGAGCATGAT
261 ACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGACCATCAGTAAGTCTTTCGAGCATGAT
* * * * * ** * **
1457781 GACTAAATCCATCGAGTCATCTATAA-TCTTTCCGAGCAAAATGATAAGT-CTTATAGGCCATCC
326 GAGTAAATCCTTCGGGTTATCTATAAGCCTTT-CGAGCATGATGATAAGTCCCT-CGGGCCATCC
*
1457844 ATAAGACCTTCGG
389 ATAAGAACTTCGG
1457857 GCATGATTTT
Statistics
Matches: 1164, Mismatches: 185, Indels: 56
0.83 0.13 0.04
Matches are distributed among these distances:
485 8 0.01
486 219 0.19
487 392 0.34
488 516 0.44
489 29 0.02
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.34
Consensus pattern (485 bp):
GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTCGGGCCATCAATA
AGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCAAGCAAGATGATAAG
TCCTTCGGGCCATCCATAAGTCTTCGGGCAGGATGTTTTCACATATTTTTTTGAAAAATAAGAAA
AATATCTCATTTAAATTGAAAATTGAAATTTTTGAAAAGTAAGAAAATGAGTTCCAAAGTTTCGT
ACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGACCATCAGTAAGTCTTTCGAGCATGAT
GAGTAAATCCTTCGGGTTATCTATAAGCCTTTCGAGCATGATGATAAGTCCCTCGGGCCATCCAT
AAGAACTTCGGCAGGATGTTTTCACATATTTTTTTGAAAAATGAGAAAAGTTTCTCATTTAAATC
TAAAATTAAAAATTTTGAAAAGTAAAAAAC
Found at i:1457989 original size:162 final size:162
Alignment explanation
Indices: 1457697--1458025 Score: 419
Period size: 162 Copynumber: 2.0 Consensus size: 162
1457687 TAGTAAGAAA
* * * *
1457697 ATGAGTTTCAAAGTTTCTTACCTCGGAAATTATTTCCAAAATTGGTAAGTCATTCGGGCCATCAA
1 ATGATTTTCAAAGATTCTTACCTAGGAAACTATTTCCAAAATTGGTAAGTCATTCGGGCCATCAA
** *
1457762 TAAGTCTGTCGAGCATGATGACTAAATCCATCGAGTCATCTATAATCTTTCCGAGCAAAATGAT-
66 TAAGTCTGTCGAGCATGATGACTAAATCCATCGAGTCAAATATAAACTTTCCGAGCAAAATGATA
*
1457826 AAGTCTTATAGGCCATCCATAAGACCTTCGGGC
131 AAGTCTT-CAGGCCATCCATAAGACCTTCGGGC
* * * *
1457859 ATGATTTTCAAAGATTCTTACCTAGTAAACTATTTTCAAAATTGGTAAGTCGTTTGGGCCATCAA
1 ATGATTTTCAAAGATTCTTACCTAGGAAACTATTTCCAAAATTGGTAAGTCATTCGGGCCATCAA
* * * * * *
1457924 TAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCAAATATAAGACTTT-CGAGGAAGATGAT
66 TAAGTCTGTCGAGCATGATGACTAAATCCATCGAGTCAAATATAA-ACTTTCCGAGCAAAATGAT
* * * * *
1457988 AAATTCTTCGGGCCATCCATAAGTCTTTTGGGC
130 AAAGTCTTCAGGCCATCCATAAGACCTTCGGGC
1458021 ATGAT
1 ATGAT
1458026 GTTTTCACAT
Statistics
Matches: 142, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
162 132 0.93
163 10 0.07
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.32
Consensus pattern (162 bp):
ATGATTTTCAAAGATTCTTACCTAGGAAACTATTTCCAAAATTGGTAAGTCATTCGGGCCATCAA
TAAGTCTGTCGAGCATGATGACTAAATCCATCGAGTCAAATATAAACTTTCCGAGCAAAATGATA
AAGTCTTCAGGCCATCCATAAGACCTTCGGGC
Found at i:1458010 original size:41 final size:42
Alignment explanation
Indices: 1457914--1458015 Score: 118
Period size: 41 Copynumber: 2.5 Consensus size: 42
1457904 TAAGTCGTTT
*
1457914 GGGCCATCAATAAGTCTTTCGAGCATGATGAGTAAATCCTTC
1 GGGCCATCAATAAGTCTTTCGAGCAAGATGAGTAAATCCTTC
* * * * *
1457956 GGGTCA-AATATAAGACTTTCGAGGAAGATGA-TAAATTCTTC
1 GGGCCATCA-ATAAGTCTTTCGAGCAAGATGAGTAAATCCTTC
*
1457997 GGGCCATCCATAAGTCTTT
1 GGGCCATCAATAAGTCTTT
1458016 TGGGCATGAT
Statistics
Matches: 48, Mismatches: 10, Indels: 5
0.76 0.16 0.08
Matches are distributed among these distances:
41 24 0.50
42 24 0.50
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (42 bp):
GGGCCATCAATAAGTCTTTCGAGCAAGATGAGTAAATCCTTC
Found at i:1458376 original size:244 final size:243
Alignment explanation
Indices: 1457861--1465460 Score: 5856
Period size: 244 Copynumber: 31.4 Consensus size: 243
1457851 CTTCGGGCAT
* * * *
1457861 GATTTTCAAAGATTCTTACCTAGTAAACTATTTTCAAAATTGGTAAGTCGTTT-GGGCCATCAAT
1 GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTC-TTTCGGGCCATCAGT
* * * * *
1457925 AAGTCTTTCGAGCATGATGA-GTAAATCCTTCGGGTCAAATATAAGACTTTCGAGGAAGATGATA
65 AAGTCTTTCGAGCATGATGATATAAATCCTTTGGGTCATATATAAGCCTTTCGAGAAAGATGATA
* * * * * * * *
1457989 AATTCTTCGGGCCATCCATAAGTCTTTTGGGCATGATGTTTTCACATTTGTTTTCGAAAAATGAG
130 AGTCCTTCAGGCCATCCATAAGACCTTCGGGCAAGATGTTTTCACATAT-TTTTCGAAAAATGAG
* * *
1458054 AAACGATTCTCATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAAC
194 AAA--TTTTTTATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* ** *
1458106 AATTTTCAAAGTTTATTACCTAGTAAACTATTTCTGAAATTGGTAAGTCTTTCAGGCCATCAGTA
1 GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCGGGCCATCAGTA
* * * * *
1458171 AGTCTTTCGGGCATGATGCATATATATCATTTGGGTCATATATAAGCCTTTCAAGAAAGTTGATA
66 AGTCTTTCGAGCATGATG-ATATAAATCCTTTGGGTCATATATAAGCCTTTCGAGAAAGATGATA
* ** * *
1458236 AGTCCTTCGGGCCATCCATAAGTTCTTTGGGCAAGATGTGTTTCACATATTTTCCGAAAAATGAG
130 AGTCCTTCAGGCCATCCATAAGACCTTCGGGCAAGATGT-TTTCACATATTTTTCGAAAAATGAG
* *
1458301 -AATTTTTTATTTAAATCTAAAAATTGAAATTTTTGAAACGTAAGAAAAC
194 AAATTTTTTATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* *
1458350 GATTCTT-AAAGTTTTTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTT-GGGCAATCAG
1 GATT-TTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGT-CTTTCGGGCCATCAG
* * ** * *
1458413 TAAGTCTTTCGAGCATGAT-AAATAAATCGTTCAGGTCATCTATAAGCCTTTCGAGGAAGATGAT
64 TAAGTCTTTCGAGCATGATGATATAAATCCTTTGGGTCATATATAAGCCTTTCGAGAAAGATGAT
* * *
1458477 AAGTCCTTCAGGCCATCGATAAGACTTTCGGG-TAGAATGTTTTCACA-AGTTTTTCGAAAAATG
129 AAGTCCTTCAGGCCATCCATAAGACCTTCGGGCAAG-ATGTTTTCACATA-TTTTTCGAAAAATG
* * * * * *
1458540 AGAAGTTTCTCATTCAAATCTAAAAATTAAAAATTTTGAAATGTAAGAAAAC
192 AGAAATTTTTTATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* * * ** *
1458592 AAATTTCAAAGTTTATTACCTAATAAACTATTTCGGAAATTGGTAAGTCTTTCAGGCCATCAGTA
1 GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCGGGCCATCAGTA
* * * * * * * *
1458657 GGTCTTTCGGGCATGATGCATATATATCATATGGGTCATATATAAGCCTTTCAAGAAAGTTGATT
66 AGTCTTTCGAGCATGATG-ATATAAATCCTTTGGGTCATATATAAGCCTTTCGAGAAAGATGATA
** * * *
1458722 AGTCCTTCAGGCCATCCATAAGTTCTTCAGGCAATATGTTTTCACATATTTTCCGAAAAATGAG-
130 AGTCCTTCAGGCCATCCATAAGACCTTCGGGCAAGATGTTTTCACATATTTTTCGAAAAATGAGA
* * * *
1458786 AATATTTTTATTTAAATCTAAAAACTGAAATTTTTGAGACGTAAGAAAAC
195 AAT-TTTTTATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* * *
1458836 GATTCTT-AAAGTTTTTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTT-GGGCAATCAA
1 GATT-TTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGT-CTTTCGGGCCATCAG
* * * *
1458899 TAAGTCTTTCGAGCATGATGA-ATAAATCGTTTGGCTCATCTATAAGCCTTTTGAGAAAGATGAT
64 TAAGTCTTTCGAGCATGATGATATAAATCCTTTGGGTCATATATAAGCCTTTCGAGAAAGATGAT
* * * * * * *
1458963 -AGTTCCTTCAGGCCATCTATAAGACTTTCGGGTAGGATATTTTCACATGTTTTTCAAAAAATGA
129 AAG-TCCTTCAGGCCATCCATAAGACCTTCGGGCAAGATGTTTTCACATATTTTTCGAAAAATGA
*
1459027 GAAAAGTTTCTTT-TTGAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAAC
193 G-AAA-TTT-TTTATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* * *
1459080 AATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCGTTCAGG-C-TCAGTA
1 GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCGGGCCATCAGTA
* * * * * * *
1459143 AGACTTTCGGGCATGAT-ACATATATCATTTGGGTCATATATAAGCCTTTCAAGAAAGTTGATAA
66 AGTCTTTCGAGCATGATGATATAAATCCTTTGGGTCATATATAAGCCTTTCGAGAAAGATGATAA
* ** * *
1459207 GTCCTTCGGGCCATCCATAAGTTCTTCGGGCAATATGTTTTCACATA-TTTTCTAAAAAATGAGA
131 GTCCTTCAGGCCATCCATAAGACCTTCGGGCAAGATGTTTTCACATATTTTTC-GAAAAATGAGA
** * *
1459271 TTTTTTTTATTTAAATCTAAAAATTG-AATTTTTGGAAAAGTAAGAAAAT
195 AATTTTTTATTTAAATCTAAAAATTGAAAATTTT-GAAAAGTAAGAAAAC
* * **
1459320 GATTCTT-AAAGGTTT-TTACTTAGTAAACTATTTCCAAAATTCGTAAGTCCTTT-GAACCATCA
1 GATT-TTCAAA-GTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGT-CTTTCGGGCCATCA
* * *
1459382 GTAAGTCTTTCGACCATGATG-TGTAAAT-CTTTCGGGTCATCA-ATAAGCCTTTTGAGAAAGAT
63 GTAAGTCTTTCGAGCATGATGATATAAATCCTTT-GGGTCAT-ATATAAGCCTTTCGAGAAAGAT
* * * * *
1459444 GATAAGTCCTTCGGGCCATCCATAAGATCTTTGGGCAAAATGTTTTCACATTTTTTTCGAAAAAT
126 GATAAGTCCTTCAGGCCATCCATAAGACCTTCGGGCAAGATGTTTTCACATATTTTTCGAAAAAT
* * *
1459509 GAGAAAAATTTCTCT-TTTAAATCTTAAAATTGAAATTTTTGAAAAGTAAGAAAAC
191 GAG--AAATTT-TTTATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* * * * * *
1459564 GTTTTTCAAAGTGTCTTACCTAGTAAACTTTTTCAAAAATTGGTAAGT-TCTTCGGGCCATCAAT
1 GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCT-TTCGGGCCATCAGT
1459628 AAGTCTTTCGAGCATGATGA-ATAAATCCTTTGGGTCATATATAAGCCTTTCGAGAAAGATGATA
65 AAGTCTTTCGAGCATGATGATATAAATCCTTTGGGTCATATATAAGCCTTTCGAGAAAGATGATA
* * * * *
1459692 AGTCCTTCAAGCCATACATAAGACCTTCAGGCAAGATGTTTTCACATATTTTTAGAAAAAAGAGA
130 AGTCCTTCAGGCCATCCATAAGACCTTCGGGCAAGATGTTTTCACATATTTTTCGAAAAATGAG-
*
1459757 AATATTTTTTCATTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAAC
194 AA-ATTTTTT-ATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* * * * *
1459809 AATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGCTAAGTCATCCGGGCCATCACTA
1 GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCGGGCCATCAGTA
* * * *
1459874 AATCTTCCGAGCATGATG-TGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGAAAGATGATAA
66 AGTCTTTCGAGCATGATGATATAAATCCTTTGGGTCATATATAAGCCTTTCGAGAAAGATGATAA
* *** * * * * *
1459938 GTCCTTCAAGATTTCCATAAGACCTTCAGGCAGGATGTTTTCACATGTTTTTAGAAATATGAGAA
131 GTCCTTCAGGCCATCCATAAGACCTTCGGGCAAGATGTTTTCACATATTTTTCGAAAAATGAGAA
* * *
1460003 ATGTTTTTCATTTAAATATGAAAATAGAAAA-TTTGAAAAGTAAGAAAAC
196 AT-TTTTT-ATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* * * *
1460052 AATTTTCATAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTCTGGCCATCAGTA
1 GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCGGGCCATCAGTA
* * * * ** *
1460117 TGTCTTTCGGGCATGATGCATAT--ATCATTTGGGTCATATATAATCCTTTAAAGAAAGTTGATA
66 AGTCTTTCGAGCATGATG-ATATAAATCCTTTGGGTCATATATAAGCCTTTCGAGAAAGATGATA
* ** * * *
1460180 AGTCCTTCAGGCCATTCATAAGTTCTTCGGGCAATATGTTTTCACATATTTTTTGAAAAATGTGA
130 AGTCCTTCAGGCCATCCATAAGACCTTCGGGCAAGATGTTTTCACATATTTTTCGAAAAATGAGA
* * *
1460245 ATTTTTTTATTTAAATCTAAAAATTGAAATTTTTTAAAAGTAAGAAAAC
195 AATTTTTTATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* * *
1460294 GATTCTT-AAAGGTTT-TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTCGGACCATCAC
1 GATT-TTCAAA-GTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCGGGCCATCAG
* * * * * * *
1460357 TAAGTCTTTCGAGCATGATG-TGTAAATCCTTCGGGTTATCTGTAAGGCTTTCGAGCAAGATGAT
64 TAAGTCTTTCGAGCATGATGATATAAATCCTTTGGGTCATATATAAGCCTTTCGAGAAAGATGAT
* * * * ** * * *
1460421 AAGTCATTCGGGCCATCCCTAAGTCC-TCTAGTAGGATGTTTTCACAGGT-TTTTTTGAAAAATG
129 AAGTCCTTCAGGCCATCCATAAGACCTTCGGGCAAGATGTTTTCACA--TATTTTTCGAAAAATG
* * * * * * *
1460484 AGAAAAGTTTCTCATTTACATCT-AAAATTTAAATTTTTGAATAGTAAGAAAAT
192 AG-AAA-TTTTTTATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* * * * * * *
1460537 GATTTTCAAAGTTTCTTACCTCGTAAATTATTTCCAAAATTGGTAAGCCATTCGAGCCATCAATA
1 GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCGGGCCATCAGTA
* * * * *
1460602 AGTCTTTCGAGCATGATGA-GTAAATCCTTCGGGTCATTTATAAGCCTTTCAAGAAAGGTGATAA
66 AGTCTTTCGAGCATGATGATATAAATCCTTTGGGTCATATATAAGCCTTTCGAGAAAGATGATAA
* * * * *
1460666 GTCCTTCAAGCCATACATAAGACCTTCAGGCAGGATGTTTTCACATATTTTTAGAAAAATGAGAA
131 GTCCTTCAGGCCATCCATAAGACCTTCGGGCAAGATGTTTTCACATATTTTTCGAAAAATGAGAA
*
1460731 ATGTTTTTCATTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAAC
196 AT-TTTTT-ATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* * *
1460781 GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCAGGCCATCAATA
1 GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCGGGCCATCAGTA
* * * *
1460846 TGTCTTTCGAGCATGATGA-GTAAATCCTTCT-GGTCTTATATAAGCCTTTCGAGAAAGATGGTA
66 AGTCTTTCGAGCATGATGATATAAATCCTT-TGGGTCATATATAAGCCTTTCGAGAAAGATGATA
* * * * * * *
1460909 AGTCCTTCAAGCCATCCATAAGACCATCAGACAGGATGTTTTCACATGTTTTTAGAAAAATGAGA
130 AGTCCTTCAGGCCATCCATAAGACCTTCGGGCAAGATGTTTTCACATATTTTTCGAAAAATGAGA
* *
1460974 AATGTTTTTAATTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAAT
195 AAT-TTTTT-ATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* * * *
1461025 AATTTTCAAAGTTTCTTACCTAGTAAACAATTTCCAAAATTGGTAAGT-TGTTCGGGCCATCGGT
1 GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCT-TTCGGGCCATCAGT
* * * * * * *
1461089 AAGTCTTTCGAGCATGAT-A-AGTAAATGCTTCGCGTCATCTATAAGCCTTTTGAGCAAGATGGT
65 AAGTCTTTCGAGCATGATGATA-TAAATCCTTTGGGTCATATATAAGCCTTTCGAGAAAGATGAT
* * * * * *
1461152 AAATTCTT-TGGCCAATCCATAAGACCTTCGTGCAGGATGTTTTCACATGTTTTTCGAAAAATGA
129 AAGTCCTTCAGGCC-ATCCATAAGACCTTCGGGCAAGATGTTTTCACATATTTTTCGAAAAATGA
* * * * *
1461216 GAAATGTTTCTCATCTAAATTTGAAAATTGAAAATTTTGAAATGTAAGAAAAC
193 GAAAT-TTT-TTATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* * * * * * * *
1461269 GATTTTCATAGTTTCTTACCTAGTAAACTTTTTCAAAAATTGCTATGTCCTTT-GGTCCATCAAT
1 GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGT-CTTTCGGGCCATCAGT
* * * * * *
1461333 AAGTCTTTTGAGCCTGATGA-GTAAATCCTTTCAGGTCA-CTATAAGCCTTTCGAG-CA-A-G--
65 AAGTCTTTCGAGCATGATGATATAAATCCTTT-GGGTCATATATAAGCCTTTCGAGAAAGATGAT
* * *
1461391 -A-----T-------T--ATAAGACC-TCTGGTAGGATGTTTTCACAGGT-TTTTTCGAAAAATG
129 AAGTCCTTCAGGCCATCCATAAGACCTTCGGGCAAGATGTTTTCACA--TATTTTTCGAAAAATG
* * * * *
1461439 AGAAAAGTTTCTCATTTAAATCTAAAATTTGAAATTTTTGAAAAGTAAGAAAAT
192 AG-AAA-TTTTTTATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAAC
** * * * *
1461493 GAAATTCAAAGTTTCTTACCTCA-TAAATTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAAT
1 GATTTTCAAAGTTTATTACCT-AGTAAACTATTTCCAAAATTGGTAAGTCTTTCGGGCCATCAGT
* ** * * * * *
1461557 AAGTCTGTAAAGCATGATGA-CTAAATCCTTCGAGTCATCTATAAGCTTTTCGAGAAAGATGATA
65 AAGTCTTTCGAGCATGATGATATAAATCCTTTGGGTCATATATAAGCCTTTCGAGAAAGATGATA
* * * * *
1461621 AGTCTTTCGGGCCATCCATAAGA-CTTCGGGCAGGGTGTTTTCACATGTTTTT-GAAAAATGAGA
130 AGTCCTTCAGGCCATCCATAAGACCTTCGGGCAAGATGTTTTCACATATTTTTCGAAAAATGAG-
* * *
1461684 AAAGTTTCTCATTTAAATCTGAAAAA-TGAAATTTTTGAAAAGTAAGAAAAC
194 AAA-TTTTTTATTTAAATCT-AAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* * * * *
1461735 TATTTTCAAAGTTTCTTACCTAGCAAACTATTTACAAAATTGGTAAGTCCTTCGGGCCATCAGTA
1 GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCGGGCCATCAGTA
* * * * * * *
1461800 AGTCGTTCGAGCATGACGA-GTAAATCCTTCGGGTCATATATAAGCCTTTCGAGCATGACGAATA
66 AGTCTTTCGAGCATGATGATATAAATCCTTTGGGTCATATATAAGCCTTTCGAGAAAGATG-ATA
* * * ** * * *
1461864 AATCCTTCGGGTCATATATAAG-CCTTCCGAGAAAGCTGATAAGTCCTTCAGGCCATACATAAGA
130 AGTCCTTCAGGCCATCCATAAGACCTT-CGGGCAA---GAT--GT-TTTCA---CAT--AT----
** * * ** * *** * *
1461928 CCTTCAGGCAAGATGTTTTCACATATTTTTAGAAAAAT-GAGAAATGTTTTTCATTTAAATATGA
179 TTTTC--GAAAAATG---AGAAAT-TTTTTATTTAAATCTA-AAA--------ATTGAAA-AT--
*
1461992 AAATTGAAAATTTTGAAAATTAAGAAAAC
226 --TTTGAAAA----G-----TAAGAAAAC
* * * * * *
1462021 AAATTTCAACGTTTCTTACCTAGTAAACTATTTCCAAAAATAGTAAGTCATTT-GGGCCATCAGT
1 GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTC-TTTCGGGCCATCAGT
* * * ** * * * *
1462085 ATGTCTTTCTAGCATGATGA-GTAAATCCTTCAGGTCTTATATAAGCATTTCAAGCAAGATGATA
65 AAGTCTTTCGAGCATGATGATATAAATCCTTTGGGTCATATATAAGCCTTTCGAGAAAGATGATA
* * * * * *
1462149 TGTCCTTCAAGCCATCCATAAGACCTTCAGGCAGGATGTTTTCACATGTTTTTAGAAAAATGAGA
130 AGTCCTTCAGGCCATCCATAAGACCTTCGGGCAAGATGTTTTCACATATTTTTCGAAAAATGAGA
* *
1462214 AATGTTTTTCATTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAAT
195 AAT-TTTTT-ATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* * * *
1462265 AATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCGTTCGGGCTATCAGTA
1 GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCGGGCCATCAGTA
* * * * * * * * *
1462330 AGTCTTTCTAGCATGAT-A-AGTAAATGCTTCGCGTCATCTACAAGCCTTTTGAGCAAGATGGTA
66 AGTCTTTCGAGCATGATGATA-TAAATCCTTTGGGTCATATATAAGCCTTTCGAGAAAGATGATA
* * * * * * *
1462393 AATTCTTC-GACCAATCTATAAGACCTTCGTGCAGGATGTTTTCACATGTTTTTCGAAAAATGAG
130 AGTCCTTCAGGCC-ATCCATAAGACCTTCGGGCAAGATGTTTTCACATATTTTTCGAAAAATGAG
* * * * * * *
1462457 AAAAGTTTCTCATTTAAATTTGAAAATTGAAATTTTTGAAATGTAAGAAAAT
194 -AAA-TTTTTTATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* * * * * *
1462509 GATTTTCATAGTTTCTTACCTAGTAAAC-ATTTCAAAAATTGGTATGTCCTTT-GGTCCATCAAT
1 GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGT-CTTTCGGGCCATCAGT
* * * * * *
1462572 AAGTCTTTTGACCATGATGA-GTAAATCCTTTCAGGTCA-CTATAAGCCTTTCGAGCAAGAT--T
65 AAGTCTTTCGAGCATGATGATATAAATCCTTT-GGGTCATATATAAGCCTTTCGAGAAAGATGAT
* * *
1462633 -A-----T------A---AT---ACC-TCTGGTAGGATGTTTTCACAGGT-TTTTTCGAAAAATG
129 AAGTCCTTCAGGCCATCCATAAGACCTTCGGGCAAGATGTTTTCACA--TATTTTTCGAAAAATG
* * * *
1462678 AGAAAAGTTTCTCATTTAAATCTAAAATTTG-AAATTTGTGAAAAGTAAGAAAAT
192 AG-AAA-TTTTTTATTTAAATCTAAAAATTGAAAATTT-TGAAAAGTAAGAAAAC
** * * * * *
1462732 GACATTCAAAGTTTCTTACCTCA-TAAATTATTTCCAAAACTGGTAAGTCCTTCGGGCCATCAAT
1 GATTTTCAAAGTTTATTACCT-AGTAAACTATTTCCAAAATTGGTAAGTCTTTCGGGCCATCAGT
* * * * * * * *
1462796 AAGTCTGTCGAGCATGATGA-CTAAATCCTTCGAGTCATCTATAAGCTTTTTGAGCAAGATGATA
65 AAGTCTTTCGAGCATGATGATATAAATCCTTTGGGTCATATATAAGCCTTTCGAGAAAGATGATA
* * * * * * *
1462860 AGTCTTTCGGGCCATCCATAAGA-CTACGGGCAGGGTGTTTTCACATGTTTTTTGAAAAATGAGA
130 AGTCCTTCAGGCCATCCATAAGACCTTCGGGCAAGATGTTTTCACATATTTTTCGAAAAATGAG-
* * *
1462924 AAAGTTTCTCATTTAAATCTGAAAAA-TGAAATTTTTGAAAAGTAAGAAAAC
194 AAA-TTTTTTATTTAAATCT-AAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* * * * ** * * *
1462975 TATTTTCAAACTTTCTTTCCTACCAAACTATTTACAAAATTCGTAAGTCCTTCGGGCCATCAGTA
1 GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCGGGCCATCAGTA
* * * * *
1463040 AGTCGTTT-GAGCATGATGA-GTAAATCCTTCGTGTCATATATAAGCCTTTTGAGGAAGATGATA
66 AGTC-TTTCGAGCATGATGATATAAATCCTTTGGGTCATATATAAGCCTTTCGAGAAAGATGATA
** * * * * * * * * *
1463103 AGTTATTCGGGCTATTCATAAGTCTTTAGGGCATGATGTTTTCACATCTTTTTCGAAAAATGTAA
130 AGTCCTTCAGGCCATCCATAAGACCTTCGGGCAAGATGTTTTCACATATTTTTCGAAAAATG-AG
* * * *
1463168 AAAGTTTTTCATTTAAATCTAAAAATTGAAATTTTTGAAAATTAAGAAAAT
194 AAA-TTTTTTATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* * * * *
1463219 AAATTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTAGTAAGTCTTTCAAGCGTG-C-TG
1 GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTC--G-G-GCCATC
* * * * * * ** * *
1463282 AGTAAATCCTTCG-G-ATCAT-CTAT-AA-GCATT---TCA-A-GCAAG---AT-GA-TAAG-T-
62 AGTAAGTCTTTCGAGCATGATGATATAAATCCTTTGGGTCATATATAAGCCTTTCGAGAAAGATG
* * * * *
1463330 CT---T--TTC-GGCTAT-CATATGACCTTCGGGC-AGAATGTTTTCACATGTGCTTT-GAAAAA
127 ATAAGTCCTTCAGGCCATCCATAAGACCTTCGGGCAAG-ATGTTTTCACATAT-TTTTCGAAAAA
* * * * * * * *
1463386 TGAGAAAAGTTTCTCATTTAAATATGAAAATTGAAATTTTTAAAAATTAAGAAAAT
190 TGAG-AAA-TTTTTTATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* * * * * * * * *
1463442 AATTTTCAATGTTTCTTACCTGGTAAATTATTTCCAAAATTGGCAAGTCCTTCTGGCCATTAGTA
1 GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCGGGCCATCAGTA
* * * * * * *
1463507 AGTCTTTCGAGCATAATGA-GTAAATACTTCGGGTCATATATAAGCCTTTCGAGGAATATAATAA
66 AGTCTTTCGAGCATGATGATATAAATCCTTTGGGTCATATATAAGCCTTTCGAGAAAGATGATAA
* * * * * * * *
1463571 GTTCTTCGGGCCATCCATAAGTCTTTTGGGCATGATG-TTTCCCATCCTTTTTCGAAAAATGAGA
131 GTCCTTCAGGCCATCCATAAGACCTTCGGGCAAGATGTTTTCACAT-ATTTTTCGAAAAATGAG-
* * * * *
1463635 AAAGTTTCTAATTTAAATCTAAAAATTGAAACTTTTTAAAAGCAAGAAAAC
194 AAA-TTTTTTATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* * * * ** * * **
1463686 AATTTTAAAAGTTTCTTACCTAATAAACTATAACCAAAATTAGTAAGTCCTTCATGCCATCAGTA
1 GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCGGGCCATCAGTA
* * * * * * ** * * *
1463751 AGTCTTTCGAGCATGATGA-GTAAATACTTCGTGTCATCTGTAAGTATTTCAAGCAAGTTGATAA
66 AGTCTTTCGAGCATGATGATATAAATCCTTTGGGTCATATATAAGCCTTTCGAGAAAGATGATAA
* * * *
1463815 GTCCCTT-GGGCCATCAATAAGACCTTTGAG-AATGATGTTTTCACATATTTGTT-GAAAAATGT
131 GT-CCTTCAGGCCATCCATAAGACCTTCGGGCAA-GATGTTTTCACATATTT-TTCGAAAAATG-
* * * * *
1463877 CAAAAATTTCTCATTTAAATCTAAAAATTGAAAATTTAGAAAAGTAAGAAAAT
192 -AGAAATTTTTTATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* * * * * * *
1463930 GATTCTCAAAGTTTCTTACCTCG-AACACAATTTCCAGAATTGGTAAGTC-TTGGGGACCTTCAG
1 GATTTTCAAAGTTTATTACCTAGTAA-ACTATTTCCAAAATTGGTAAGTCTTTCGGG-CCATCAG
* * * * * *
1463993 TAAGTCTTTCGATCATGATG-TGTAAATACTTCTGGG-CATCTATAAGCCTTTCAAGAAATATGA
64 TAAGTCTTTCGAGCATGATGATATAAATCCTT-TGGGTCATATATAAGCCTTTCGAGAAAGATGA
* * * * * * *
1464056 TAAGTCCTTC-GTGCCATCAATAAGACATTCAGGAAATATGTTTTCACATGTTTTTTGAAAAATG
128 TAAGTCCTTCAG-GCCATCCATAAGACCTTCGGGCAAGATGTTTTCACATATTTTTCGAAAAATG
** * * * * * *
1464120 AGAAATGTTTCTCGTTGAAATATGAAAATTG-AAATTTTTAGAAAGTAAAAAAAAT
192 AGAAAT-TTT-TTATTTAAATCTAAAAATTGAAAATTTTGA-AAAGT-AAGAAAAC
* * ** * *
1464175 GATTTTAAAAGTTTCTTAGATAGTAAACTATTT-CAAAATTTGATATGTCCTTT-GGGCCATCAG
1 GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAA-TTGGTAAGT-CTTTCGGGCCATCAG
* * * * * *
1464238 AAAGTTTTTCGAGCATGATGA-GTAAATCCTTCGGGTCA-CTATAAGCCTTTCGAGCAAGATGAT
64 TAAGTCTTTCGAGCATGATGATATAAATCCTTTGGGTCATATATAAGCCTTTCGAGAAAGATGAT
** * *
1464301 AAGTCCTTTGGGCCAACCATAAGACCTTCGGGCAGGATGTTTTCACATATTTTTCGAAACAATGA
129 AAGTCCTTCAGGCCATCCATAAGACCTTCGGGCAAGATGTTTTCACATATTTTTCGAAA-AATGA
* * * *
1464366 GAAAGGTTTCTCATTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAAT
193 GAAA--TTTTTTATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* * * *
1464419 AATTTTCAAAGTTTAATACCTAGTAAACTATTAT-CAAAATTGGTACGTCCTTT-GGGTCATCAG
1 GATTTTCAAAGTTTATTACCTAGTAAACTATT-TCCAAAATTGGTAAGT-CTTTCGGGCCATCAG
** * * * * * * *
1464482 TAAACCTTTTC-AACATGATGA-GTAAATCCTTCGGGTTATATATAAGCCTTTCAAGCAATATGA
64 TAAGTC-TTTCGAGCATGATGATATAAATCCTTTGGGTCATATATAAGCCTTTCGAGAAAGATGA
* * ** * * * * *
1464545 TAAGTCCTTCGGGTCATCCATAAGGTCTTCGAGTAGGATGTTTTCACATATTTTCCAAAAAATGA
128 TAAGTCCTTCAGGCCATCCATAAGACCTTCGGGCAAGATGTTTTCACATATTTTTCGAAAAATGA
** * * * * ** * * *
1464610 GAAAAAAATCTCATTTAAATATGAAAATTGAATTTTTTCTATAAGTAAGAAAAT
193 G--AAATTTTTTATTTAAATCTAAAAATTGAAAATTTT-GAAAAGTAAGAAAAC
** * ** * *
1464664 GATTCCCAAAGTTGT-TTACCTAGTAAACTATTTCTAAAATTGGTAAGTCCCTCGGCCCATCAGA
1 GATTTTCAAAGTT-TATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCGGGCCATCAGT
* * ** * * *
1464728 AAGCCTTTTGAGCATGATG-GGTAAATCCTTCGGGTCATTTATAAGCCTTTCGAGCAAGATGATA
65 AAGTCTTTCGAGCATGATGATATAAATCCTTTGGGTCATATATAAGCCTTTCGAGAAAGATGATA
* * ** * *
1464792 AGTCCTTC-GGGCATTCCATAGGACCTT-GAGGCTGGATGTTTTCACATGTTTTTCAAAAAATGA
130 AGTCCTTCAGGCCA-TCCATAAGACCTTCG-GGCAAGATGTTTTCACATATTTTTCGAAAAATGA
* * *
1464855 GAAAGTTTCTCATTTAAAATCTGAAAAA-TG-AAATTTCTGAAAA-TAAGAAAAT
193 GAAA-TTTTTTATTT-AAATCT-AAAAATTGAAAATTT-TGAAAAGTAAGAAAAC
* * * *
1464907 GATTTTCAAAGTTTGTTACCAAGTAAACTATTTCGAAAATTGGTAAG----TC---CC-T---TG
1 GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCGGGCCATCAGTA
* ** * * ** *
1464961 AG-CATT-----ATGA-G-TA-AAA-CCTTCCGGTAATCTATAAGCCTTTCGAGCGATATGATAA
66 AGTCTTTCGAGCATGATGATATAAATCCTTTGGGTCATATATAAGCCTTTCGAGAAAGATGATAA
* * * ** * * * * * *
1465016 GTTCTTAAGGCAATCCATAAGACCTTCAAGCAGGATGTTTTCATATGTTTTGCAAAAAATGATAA
131 GTCCTTCAGGCCATCCATAAGACCTTCGGGCAAGATGTTTTCACATATTTTTCGAAAAATGA-GA
* * * * *
1465081 AACTTTCTCATTTAAATATGAAAATT-AAAATTTTTGAAAAGGAAGAAAAC
195 AA-TTTTTTATTTAAATCTAAAAATTGAAAA-TTTTGAAAAGTAAGAAAAC
* * *
1465131 GATTTTCAAAGTTTCTTACCTAGTAAACTATTTCAAAAATTTGTAAGTCCTTT-GGGCCATCAGT
1 GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGT-CTTTCGGGCCATCAGT
* * * * **
1465195 AAGTCTTTCGAGCATGAT-A-AGTAAATCCTTCGGGACATCTATAAGCCTTTCAATCAAGATGAT
65 AAGTCTTTCGAGCATGATGATA-TAAATCCTTTGGGTCATATATAAGCCTTTCGAGAAAGATGAT
* * * * * * **
1465258 AAGTCTTTC-GAGACATCCAAAAGACCTTCGGTCATGATGTTTTCACATTTTTTTAAAAAAATGA
129 AAGTCCTTCAG-GCCATCCATAAGACCTTCGGGCAAGATGTTTTCACATATTTTTCGAAAAATGA
* * * * * *
1465322 GAAAATTTTCTAATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAAT
193 G-AAATTTT-TTATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* * * *
1465375 AATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTCGGGACATCAGTA
1 GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCGGGCCATCAGTA
*
1465440 AGTCTTTCGAGCATGTTGATA
66 AGTCTTTCGAGCATGATGATA
1465461 AGTCCCTCGG
Statistics
Matches: 6035, Mismatches: 985, Indels: 669
0.78 0.13 0.09
Matches are distributed among these distances:
219 1 0.00
220 2 0.00
221 12 0.00
222 29 0.00
223 340 0.06
224 305 0.05
225 14 0.00
226 10 0.00
227 3 0.00
228 3 0.00
229 3 0.00
230 5 0.00
231 6 0.00
232 7 0.00
233 4 0.00
234 3 0.00
235 8 0.00
236 6 0.00
237 4 0.00
238 3 0.00
239 14 0.00
240 75 0.01
241 96 0.02
242 807 0.13
243 790 0.13
244 2400 0.40
245 704 0.12
246 41 0.01
247 90 0.01
248 10 0.00
249 3 0.00
250 4 0.00
253 10 0.00
255 1 0.00
257 2 0.00
258 6 0.00
259 2 0.00
262 7 0.00
263 4 0.00
264 10 0.00
265 8 0.00
266 8 0.00
268 6 0.00
270 2 0.00
271 1 0.00
272 4 0.00
273 1 0.00
274 1 0.00
276 3 0.00
277 7 0.00
279 4 0.00
280 2 0.00
281 1 0.00
282 3 0.00
285 21 0.00
286 117 0.02
287 2 0.00
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (243 bp):
GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCGGGCCATCAGTA
AGTCTTTCGAGCATGATGATATAAATCCTTTGGGTCATATATAAGCCTTTCGAGAAAGATGATAA
GTCCTTCAGGCCATCCATAAGACCTTCGGGCAAGATGTTTTCACATATTTTTCGAAAAATGAGAA
ATTTTTTATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAAC
Found at i:1460930 original size:41 final size:41
Alignment explanation
Indices: 1460821--1460930 Score: 105
Period size: 42 Copynumber: 2.7 Consensus size: 41
1460811 TTTCCAAAAT
* * * *
1460821 TGGTAAGTCCTTCAGGCCATCAATATGTCTTTCGAGCATGA
1 TGGTAAGTCCTTCAGGCCATCAATAAGCCTTTCGAGAAAGA
* * * *
1460862 TGAGTAAATCCTTCTGGTC-TTATATAAGCCTTTCGAGAAAGA
1 TG-GTAAGTCCTTCAGGCCATCA-ATAAGCCTTTCGAGAAAGA
* *
1460904 TGGTAAGTCCTTCAAGCCATCCATAAG
1 TGGTAAGTCCTTCAGGCCATCAATAAG
1460931 ACCATCAGAC
Statistics
Matches: 52, Mismatches: 14, Indels: 6
0.72 0.19 0.08
Matches are distributed among these distances:
41 21 0.40
42 31 0.60
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (41 bp):
TGGTAAGTCCTTCAGGCCATCAATAAGCCTTTCGAGAAAGA
Found at i:1461189 original size:488 final size:488
Alignment explanation
Indices: 1457861--1465471 Score: 7376
Period size: 488 Copynumber: 15.7 Consensus size: 488
1457851 CTTCGGGCAT
* * * *
1457861 GATTTTCAAAGATTCTTACCTAGTAAACTATTTTCAAAATTGGTAAGTCGTTTGGGCCATCAATA
1 GATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATA
** * * *
1457926 AGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCAAATATAAGACTTTCGAGGAAGATGATAAA
66 AGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATAAG
* * * * * * *
1457991 TTCTTCGGGCCATCCATAAGTCTTTTGGGCATGATGTTTTCACATTTGTTTTCGAAAAATGAGAA
131 TCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACATGT-TTTTAGAAAAATGAGAA
* * * * *
1458056 ACGATTCTCATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAACAATTTTCAAAGTTTA
195 AAGTTTCTCATTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAATAATTTTCAAAGTTTC
** * * *
1458121 TTACCTAGTAAACTATTTCTGAAATTGGTAAGTCTTTCAGGCCATCAGTAAGTCTTTCGGGCATG
260 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATG
* * * *
1458186 ATGCA-TATATATCATTTGGGTCATATATAAGCCTTTCAAGAAAGTTGATAAGTCCTTCGGGCCA
325 ATG-AGTA-A-ATCCTTCGGGTCATATATAAGCCTTTCAAGAAAGATGATAAGTCCTTCAGGCCA
** * * **
1458250 TCCATAAGTTCTTTGGGCAAGATGTGTTTCACATATTTTCCGAAAAATGAG-AAT-TTTTT-ATT
387 TCCATAAGACCTTCGGGCAGGATGT-TTTCACATATTTTTAGAAAAATGAGAAATGTTTTTCATT
* * *
1458312 TAAATCTAAAAATTGAAATTTTTGAAACGTAAGAAAAC
451 TAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* * * *
1458350 GATTCTT-AAAGTTTTTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTTGGGCAATCAGT
1 GATT-TTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAAT
* * * * *
1458414 AAGTCTTTCGAGCATGATAAATAAATCGTTCAGGTCATCTATAAGCCTTTCGAGGAAGATGATAA
65 AAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATAA
* * * * * * *
1458479 GTCCTTCAGGCCATCGATAAGACTTTCGGGTAGAATGTTTTCACAAGTTTTTCGAAAAATGAG--
130 GTCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACATGTTTTTAGAAAAATGAGAA
* * * * * * *
1458542 AAGTTTCTCATTCAAATCTAAAAATTAAAAATTTTGAAATGTAAGAAAACAAATTTCAAAGTTTA
195 AAGTTTCTCATTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAATAATTTTCAAAGTTTC
* ** * * * *
1458607 TTACCTAATAAACTATTTCGGAAATTGGTAAGTCTTTCAGGCCATCAGTAGGTCTTTCGGGCATG
260 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATG
* * *
1458672 ATGCA-TATATATCATAT-GGGTCATATATAAGCCTTTCAAGAAAGTTGATTAGTCCTTCAGGCC
325 ATG-AGTA-A-ATCCT-TCGGGTCATATATAAGCCTTTCAAGAAAGATGATAAGTCCTTCAGGCC
** * ** ** *
1458735 ATCCATAAGTTCTTCAGGCAATATGTTTTCACATATTTTCCGAAAAATGAG-AATATTTTT-ATT
386 ATCCATAAGACCTTCGGGCAGGATGTTTTCACATATTTTTAGAAAAATGAGAAATGTTTTTCATT
* * * * *
1458798 TAAATCTAAAAACTGAAATTTTTGAGACGTAAGAAAAC
451 TAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* * *
1458836 GATTCTT-AAAGTTTTTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTTGGGCAATCAAT
1 GATT-TTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAAT
* * * * * *
1458900 AAGTCTTTCGAGCATGATGAATAAATCGTTTGGCTCATCTATAAGCCTTTTGAGAAAGATGAT-A
65 AAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATAA
* * * * *
1458964 GTTCCTTCAGGCCATCTATAAGACTTTCGGGTAGGATATTTTCACATGTTTTTCA-AAAAATGAG
130 G-TCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACATGTTTTT-AGAAAAATGAG
* * *
1459028 AAAAGTTTCT-TTTTGAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAACAATTTTCAAAGT
193 AAAAGTTTCTCATTT-AAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAATAATTTTCAAAGT
* * * * *
1459092 TTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCGTTCAGG-C-TCAGTAAGACTTTCGGGC
257 TTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGC
* * * * * *
1459155 ATGAT-ACATATATCATTTGGGTCATATATAAGCCTTTCAAGAAAGTTGATAAGTCCTTCGGGCC
322 ATGATGA-GTAAATCCTTCGGGTCATATATAAGCCTTTCAAGAAAGATGATAAGTCCTTCAGGCC
** ** * *
1459219 ATCCATAAGTTCTTCGGGCAATATGTTTTCACATATTTTCTA-AAAAATGAG--ATTTTTTTTAT
386 ATCCATAAGACCTTCGGGCAGGATGTTTTCACATATTTT-TAGAAAAATGAGAAATGTTTTTCAT
* * *
1459281 TTAAATCTAAAAATTG-AATTTTTGGAAAAGTAAGAAAAT
450 TTAAATCTGAAAATTGAAAATTTT-GAAAAGTAAGAAAAC
* * * ** *
1459320 GATTCTT-AAAGGTTT-TTACTTAGTAAACTATTTCCAAAATTCGTAAGTCCTTTGAACCATCAG
1 GATT-TTCAAA-GTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAA
* * * * * *
1459383 TAAGTCTTTCGACCATGATGTGTAAATCTTTCGGGTCATCAATAAGCCTTTTGAGAAAGATGATA
64 TAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATA
* * ** * *
1459448 AGTCCTTCGGGCCATCCATAAGATCTTTGGGCAAAATGTTTTCACATTTTTTTCGAAAAATGAGA
129 AGTCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACATGTTTTTAGAAAAATGAGA
* * * * *** *
1459513 AAAATTTCTCTTTTAAATCTTAAAATTGAAATTTTTGAAAAGTAAGAAAACGTTTTTCAAAGTGT
194 AAAGTTTCTCATTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAATAATTTTCAAAGTTT
* * * *
1459578 CTTACCTAGTAAACTTTTTCAAAAATTGGTAAGTTCTTCGGGCCATCAATAAGTCTTTCGAGCAT
259 CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCAT
* * * * *
1459643 GATGAATAAATCCTTTGGGTCATATATAAGCCTTTCGAGAAAGATGATAAGTCCTTCAAGCCATA
324 GATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCAAGAAAGATGATAAGTCCTTCAGGCCATC
* * * *
1459708 CATAAGACCTTCAGGCAAGATGTTTTCACATATTTTTAGAAAAAAGAGAAATATTTTTTCATTTA
389 CATAAGACCTTCGGGCAGGATGTTTTCACATATTTTTAGAAAAATGAGAAAT-GTTTTTCATTTA
1459773 AATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAAC
453 AATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* * * * * *
1459809 AATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGCTAAGTCATCCGGGCCATCACTA
1 GATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATA
* * * * *
1459874 AATCTTCCGAGCATGATGTGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGAAAGATGATAAG
66 AGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATAAG
** *** * *
1459939 TCCTTCAAGATTTCCATAAGACCTTCAGGCAGGATGTTTTCACATGTTTTTAGAAATATGAGAAA
131 TCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACATGTTTTTAGAAAAATGAGAAA
* * * * * * *
1460004 TGTTTTTCATTTAAATATGAAAATAGAAAA-TTTGAAAAGTAAGAAAACAATTTTCATAGTTTAT
196 AGTTTCTCATTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAATAATTTTCAAAGTTTCT
* * * *
1460068 TACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTCTGGCCATCAGTATGTCTTTCGGGCATGA
261 TACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGA
* * * * * * *
1460133 TGCA-TATATCATTTGGGTCATATATAATCCTTTAAAGAAAGTTGATAAGTCCTTCAGGCCATTC
326 TG-AGTAAATCCTTCGGGTCATATATAAGCCTTTCAAGAAAGATGATAAGTCCTTCAGGCCATCC
** ** * * *
1460197 ATAAGTTCTTCGGGCAATATGTTTTCACATATTTTTTGAAAAATGTG-AAT-TTTTTTATTTAAA
390 ATAAGACCTTCGGGCAGGATGTTTTCACATATTTTTAGAAAAATGAGAAATGTTTTTCATTTAAA
* * *
1460260 TCTAAAAATTGAAATTTTTTAAAAGTAAGAAAAC
455 TCTGAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* * *
1460294 GATTCTT-AAAGGTTT-TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTCGGACCATCAC
1 GATT-TTCAAA-GTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAA
* * * *
1460357 TAAGTCTTTCGAGCATGATGTGTAAATCCTTCGGGTTATCTGTAAGGCTTTCGAGCAAGATGATA
64 TAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATA
* * * ** * * *
1460422 AGTCATTCGGGCCATCCCTAAGTCC-TCTAGTAGGATGTTTTCACAGGTTTTTTTGAAAAATGAG
129 AGTCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACATG-TTTTTAGAAAAATGAG
* * * * *
1460486 AAAAGTTTCTCATTTACATCT-AAAATTTAAATTTTTGAATAGTAAGAAAATGATTTTCAAAGTT
193 AAAAGTTTCTCATTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAATAATTTTCAAAGTT
* * * *
1460550 TCTTACCTCGTAAATTATTTCCAAAATTGGTAAG-CCATTCGAGCCATCAATAAGTCTTTCGAGC
258 TCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCC-TTCGGGCCATCAGTAAGTCTTTCGAGC
* * *
1460614 ATGATGAGTAAATCCTTCGGGTCATTTATAAGCCTTTCAAGAAAGGTGATAAGTCCTTCAAGCCA
322 ATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCAAGAAAGATGATAAGTCCTTCAGGCCA
* *
1460679 TACATAAGACCTTCAGGCAGGATGTTTTCACATATTTTTAGAAAAATGAGAAATGTTTTTCATTT
387 TCCATAAGACCTTCGGGCAGGATGTTTTCACATATTTTTAGAAAAATGAGAAATGTTTTTCATTT
1460744 AAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAAC
452 AAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* *
1460781 GATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCAGGCCATCAATA
1 GATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATA
* * * * * *
1460846 TGTCTTTCGAGCATGATGAGTAAATCCTTCTGGTCTTATATAAGCCTTTCGAGAAAGATGGTAAG
66 AGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATAAG
** * * *
1460911 TCCTTCAAGCCATCCATAAGACCATCAGACAGGATGTTTTCACATGTTTTTAGAAAAATGAGAAA
131 TCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACATGTTTTTAGAAAAATGAGAAA
* * *
1460976 TGTTTTTAATTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAATAATTTTCAAAGTTTCT
196 AGTTTCTCATTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAATAATTTTCAAAGTTTCT
* ** *
1461041 TACCTAGTAAACAATTTCCAAAATTGGTAAGTTGTTCGGGCCATCGGTAAGTCTTTCGAGCATGA
261 TACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGA
* * * * ** * * * * *
1461106 TAAGTAAATGCTTCGCGTCATCTATAAGCCTTTTGAGCAAGATGGTAAATTCTT-TGGCCAATCC
326 TGAGTAAATCCTTCGGGTCATATATAAGCCTTTCAAGAAAGATGATAAGTCCTTCAGGCC-ATCC
* * * * *
1461170 ATAAGACCTTCGTGCAGGATGTTTTCACATGTTTTTCGAAAAATGAGAAATGTTTCTCATCTAAA
390 ATAAGACCTTCGGGCAGGATGTTTTCACATATTTTTAGAAAAATGAGAAATGTTTTTCATTTAAA
* *
1461235 TTTGAAAATTGAAAATTTTGAAATGTAAGAAAAC
455 TCTGAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* * * * * * *
1461269 GATTTTCATAGTTTCTTACCTAGTAAACTTTTTCAAAAATTGCTATGTCCTTTGGTCCATCAATA
1 GATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATA
* * *
1461334 AGTCTTTTGAGCCTGATGAGTAAATCCTTTCAGGTCA-CTATAAGCCTTTCGAGC-A-A-G---A
66 AGTCTTTCGAGCATGATGAGTAAATCC-TTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATAA
* * * *
1461392 -----T-------T--ATAAGACC-TCTGGTAGGATGTTTTCACAGGTTTTTTCGAAAAATGAGA
130 GTCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACATG-TTTTTAGAAAAATGAGA
* *
1461442 AAAGTTTCTCATTTAAATCT-AAAATTTGAAATTTTTGAAAAGTAAGAAAATGAA-ATTCAAAGT
194 AAAGTTTCTCATTTAAATCTGAAAA-TTGAAAATTTTGAAAAGTAAGAAAAT-AATTTTCAAAGT
* * * **
1461505 TTCTTACCTCA-TAAATTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATAAGTCTGTAAAG
257 TTCTTACCT-AGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAG
* * * * * * *
1461569 CATGATGACTAAATCCTTCGAGTCATCTATAAGCTTTTCGAGAAAGATGATAAGTCTTTCGGGCC
321 CATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCAAGAAAGATGATAAGTCCTTCAGGCC
* * * *
1461634 ATCCATAAGA-CTTCGGGCAGGGTGTTTTCACATGTTTTT-GAAAAATGAGAAAAGTTTCTCATT
386 ATCCATAAGACCTTCGGGCAGGATGTTTTCACATATTTTTAGAAAAATGAGAAATGTTTTTCATT
* *
1461697 TAAATCTGAAAAATGAAATTTTTGAAAAGTAAGAAAAC
451 TAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* * * *
1461735 TATTTTCAAAGTTTCTTACCTAGCAAACTATTTACAAAATTGGTAAGTCCTTCGGGCCATCAGTA
1 GATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATA
* * * * *
1461800 AGTCGTTCGAGCATGACGAGTAAATCCTTCGGGTCATATATAAGCCTTTCGAGCATGACGAATAA
66 AGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATG-ATAA
* * ** ** * *
1461865 ATCCTTCGGGTCATATATAAG-CCTTCCGAGAAAGCTGATAAGTCCTTCAGGCCATACATAAGAC
130 GTCCTTCGGGCCATCCATAAGACCTT-CG-GGCAG--GAT--GT--TT----TC--ACAT--G-T
* * * * *
1461929 CTTCAGGCAAGATGTTTTCACAT-ATTTTTAGAAAAATGAGAAATGTTTTTCATTTAAATATGAA
178 TTTTA-G-AA-A-------A-ATGA----GA-AAA----------GTTTCTCATTTAAATCTGAA
* * * *
1461993 AATTGAAAATTTTGAAAATTAAGAAAACAAATTTCAACGTTTCTTACCTAGTAAACTATTTCCAA
217 AATTGAAAATTTTGAAAAGTAAGAAAATAATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAA
* * * * * * * *
1462058 AAATAGTAAGTCATTTGGGCCATCAGTATGTCTTTCTAGCATGATGAGTAAATCCTTCAGGTCTT
282 AATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCAT
* * * * *
1462123 ATATAAGCATTTCAAGCAAGATGATATGTCCTTCAAGCCATCCATAAGACCTTCAGGCAGGATGT
347 ATATAAGCCTTTCAAGAAAGATGATAAGTCCTTCAGGCCATCCATAAGACCTTCGGGCAGGATGT
*
1462188 TTTCACATGTTTTTAGAAAAATGAGAAATGTTTTTCATTTAAATCTGAAAATTGAAAATTTTGAA
412 TTTCACATATTTTTAGAAAAATGAGAAATGTTTTTCATTTAAATCTGAAAATTGAAAATTTTGAA
*
1462253 AAGTAAGAAAAT
477 AAGTAAGAAAAC
* * * *
1462265 AATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCGTTCGGGCTATCAGTA
1 GATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATA
* * * * * * * *
1462330 AGTCTTTCTAGCATGATAAGTAAATGCTTCGCGTCATCTACAAGCCTTTTGAGCAAGATGGTAAA
66 AGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATAAG
* * * * *
1462395 TTCTTC-GACCAATCTATAAGACCTTCGTGCAGGATGTTTTCACATGTTTTTCGAAAAATGAGAA
131 TCCTTCGGGCC-ATCCATAAGACCTTCGGGCAGGATGTTTTCACATGTTTTTAGAAAAATGAGAA
* * * * *
1462459 AAGTTTCTCATTTAAATTTGAAAATTGAAATTTTTGAAATGTAAGAAAATGATTTTCATAGTTTC
195 AAGTTTCTCATTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAATAATTTTCAAAGTTTC
* * * * * * *
1462524 TTACCTAGTAAAC-ATTTCAAAAATTGGTATGTCCTTTGGTCCATCAATAAGTCTTTTGACCATG
260 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATG
* * * *
1462588 ATGAGTAAATCCTTTCAGGTCA-CTATAAGCCTTTCGAGCAAGAT--T-A-----T------A--
325 ATGAGTAAATCC-TTCGGGTCATATATAAGCCTTTCAAGAAAGATGATAAGTCCTTCAGGCCATC
* * * * *
1462636 -AT---ACC-TCTGGTAGGATGTTTTCACAGGT-TTTTTCGAAAAATGAGAAAAGTTTCTCATTT
389 CATAAGACCTTCGGGCAGGATGTTTTCACA--TATTTTTAGAAAAATGAGAAATGTTTTTCATTT
*
1462695 AAATCT-AAAATTTG-AAATTTGTGAAAAGTAAGAAAAT
452 AAATCTGAAAA-TTGAAAATTT-TGAAAAGTAAGAAAAC
** * *
1462732 GACATTCAAAGTTTCTTACCTCA-TAAATTATTTCCAAAACTGGTAAGTCCTTCGGGCCATCAAT
1 GATTTTCAAAGTTTCTTACCT-AGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAAT
* * * * *
1462796 AAGTCTGTCGAGCATGATGACTAAATCCTTCGAGTCATCTATAAGCTTTTTGAGCAAGATGATAA
65 AAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATAA
* * * *
1462861 GTCTTTCGGGCCATCCATAAGA-CTACGGGCAGGGTGTTTTCACATGTTTTTTGAAAAATGAGAA
130 GTCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACATGTTTTTAGAAAAATGAGAA
* * *
1462925 AAGTTTCTCATTTAAATCTGAAAAATGAAATTTTTGAAAAGTAAGAAAACT-ATTTTCAAACTTT
195 AAGTTTCTCATTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAA-TAATTTTCAAAGTTT
* ** * *
1462989 CTTTCCTACCAAACTATTTACAAAATTCGTAAGTCCTTCGGGCCATCAGTAAGTCGTTT-GAGCA
259 CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTC-TTTCGAGCA
* ** * ** * *
1463053 TGATGAGTAAATCCTTCGTGTCATATATAAGCCTTTTGAGGAAGATGATAAGTTATTCGGGCTAT
323 TGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCAAGAAAGATGATAAGTCCTTCAGGCCAT
* * * * * * * *
1463118 TCATAAGTCTTTAGGGCATGATGTTTTCACATCTTTTTCGAAAAATGTA-AAAAGTTTTTCATTT
388 CCATAAGACCTTCGGGCAGGATGTTTTCACATATTTTTAGAAAAATG-AGAAATGTTTTTCATTT
* * * *
1463182 AAATCTAAAAATTGAAATTTTTGAAAATTAAGAAAAT
452 AAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* * *
1463219 AAATTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTAGTAAGT-CTT-------TC---A
1 GATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATA
* * * *
1463273 AG-----C--G--TGCTGAGTAAATCCTTCGGATCATCTATAAGCATTTCAAGCAAGATGATAAG
66 AGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATAAG
* * * * *
1463329 TCTTTTC-GGCTAT-CATATGACCTTCGGGCAGAATGTTTTCACATGTGCTTT-GAAAAATGAGA
131 TC-CTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACATGT-TTTTAGAAAAATGAGA
* * * * *
1463391 AAAGTTTCTCATTTAAATATGAAAATTGAAATTTTTAAAAATTAAGAAAATAATTTTCAATGTTT
194 AAAGTTTCTCATTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAATAATTTTCAAAGTTT
* * * * *
1463456 CTTACCTGGTAAATTATTTCCAAAATTGGCAAGTCCTTCTGGCCATTAGTAAGTCTTTCGAGCAT
259 CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCAT
* * * * * * * *
1463521 AATGAGTAAATACTTCGGGTCATATATAAGCCTTTCGAGGAATATAATAAGTTCTTCGGGCCATC
324 GATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCAAGAAAGATGATAAGTCCTTCAGGCCATC
* * * * * * * * * *
1463586 CATAAGTCTTTTGGGCATGATG-TTTCCCATCCTTTTTCGAAAAATGAGAAAAGTTTCTAATTTA
389 CATAAGACCTTCGGGCAGGATGTTTTCACAT-ATTTTTAGAAAAATGAGAAATGTTTTTCATTTA
* * * *
1463650 AATCTAAAAATTGAAACTTTTTAAAAGCAAGAAAAC
453 AATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAAC
* * * ** * ** *
1463686 AATTTTAAAAGTTTCTTACCTAATAAACTATAACCAAAATTAGTAAGTCCTTCATGCCATCAGTA
1 GATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATA
* * * ** * *
1463751 AGTCTTTCGAGCATGATGAGTAAATACTTCGTGTCATCTGTAAGTATTTCAAGCAAGTTGATAAG
66 AGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATAAG
* * * * * * **
1463816 TCCCTT-GGGCCATCAATAAGACCTTTGAGAATGATGTTTTCACATATTTGTT-GAAAAATGTCA
131 T-CCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACATGTTT-TTAGAAAAATGAGA
* * * * *
1463879 AAAATTTCTCATTTAAATCTAAAAATTGAAAATTTAGAAAAGTAAGAAAATGATTCTCAAAGTTT
194 AAAGTTTCTCATTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAATAATTTTCAAAGTTT
* * * * * *
1463944 CTTACCTCG-AACACAATTTCCAGAATTGGTAAGT-CTTGGGGACCTTCAGTAAGTCTTTCGATC
259 CTTACCTAGTAA-ACTATTTCCAAAATTGGTAAGTCCTTCGGG-CCATCAGTAAGTCTTTCGAGC
* * * *
1464007 ATGATGTGTAAATACTTCTGGG-CATCTATAAGCCTTTCAAGAAATATGATAAGTCCTTC-GTGC
322 ATGATGAGTAAATCCTTC-GGGTCATATATAAGCCTTTCAAGAAAGATGATAAGTCCTTCAG-GC
* * * * ** * * * *
1464070 CATCAATAAGACATTCAGGAAATATGTTTTCACATGTTTTTTGAAAAATGAGAAATGTTTCTCGT
385 CATCCATAAGACCTTCGGGCAGGATGTTTTCACATATTTTTAGAAAAATGAGAAATGTTTTTCAT
* * * * *
1464135 TGAAATATGAAAATTG-AAATTTTTAGAAAGTAAAAAAAAT
450 TTAAATCTGAAAATTGAAAATTTTGA-AAAGT-AAGAAAAC
* ** * * *
1464175 GATTTTAAAAGTTTCTTAGATAGTAAACTATTT-CAAAATTTGATATGTCCTTTGGGCCATCAGA
1 GATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAA-TTGGTAAGTCCTTCGGGCCATCA-A
*
1464239 -AAGTTTTTCGAGCATGATGAGTAAATCCTTCGGGTCA-CTATAAGCCTTTCGAGCAAGATGATA
64 TAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATA
* * * *
1464302 AGTCCTTTGGGCCAACCATAAGACCTTCGGGCAGGATGTTTTCACATATTTTTCGAAACAATGAG
129 AGTCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACATGTTTTTAGAAA-AATGAG
*
1464367 AAAGGTTTCTCATTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAATAATTTTCAAAGTT
193 AAAAGTTTCTCATTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAATAATTTTCAAAGTT
** * * * ** *
1464432 TAATACCTAGTAAACTATTAT-CAAAATTGGTACGTCCTTTGGGTCATCAGTAAACCTTTTC-AA
258 TCTTACCTAGTAAACTATT-TCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTC-TTTCGAG
* * * * *
1464495 CATGATGAGTAAATCCTTCGGGTTATATATAAGCCTTTCAAGCAATATGATAAGTCCTTCGGGTC
321 CATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCAAGAAAGATGATAAGTCCTTCAGGCC
** * * * **** *
1464560 ATCCATAAGGTCTTCGAGTAGGATGTTTTCACATATTTTCCA-AAAAATGAGAAAAAAATCTCAT
386 ATCCATAAGACCTTCGGGCAGGATGTTTTCACATATTTT-TAGAAAAATGAGAAATGTTTTTCAT
* ** * * *
1464624 TTAAATATGAAAATTGAATTTTTTCTATAAGTAAGAAAAT
450 TTAAATCTGAAAATTGAAAATTTT-GAAAAGTAAGAAAAC
** * * *
1464664 GATTCCCAAAGTTGT-TTACCTAGTAAACTATTTCTAAAATTGGTAAGTCCCTCGGCCCATCAGA
1 GATTTTCAAAGTT-TCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCA-A
* * * *
1464728 -AAGCCTTTTGAGCATGATGGGTAAATCCTTCGGGTCATTTATAAGCCTTTCGAGCAAGATGATA
64 TAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATA
* *
1464792 AGTCCTTCGGG-CATTCCATAGGACCTT-GAGGCTGGATGTTTTCACATGTTTTTCA-AAAAATG
129 AGTCCTTCGGGCCA-TCCATAAGACCTTCG-GGCAGGATGTTTTCACATGTTTTT-AGAAAAATG
* *
1464854 AG-AAAGTTTCTCATTTAAAATCTGAAAAATG-AAATTTCTGAAAA-TAAGAAAATGATTTTCAA
191 AGAAAAGTTTCTCATTT-AAATCTGAAAATTGAAAATTT-TGAAAAGTAAGAAAATAATTTTCAA
* * *
1464916 AGTTTGTTACCAAGTAAACTATTTCGAAAATTGGTAAG----T-----C--C-------C-TT-G
254 AGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCG
* * * * * * ** * * *
1464961 AGCATTATGAGTAAAACCTTCCGGTAATCTATAAGCCTTTCGAGCGATATGATAAGTTCTTAAGG
319 AGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCAAGAAAGATGATAAGTCCTTCAGG
* ** * * * * ** *
1465026 CAATCCATAAGACCTTCAAGCAGGATGTTTTCATATGTTTTGCA-AAAAATGATAAAACTTTCTC
384 CCATCCATAAGACCTTCGGGCAGGATGTTTTCACATATTTT-TAGAAAAATGAGAAATGTTTTTC
* *
1465090 ATTTAAATATGAAAATT-AAAATTTTTGAAAAGGAAGAAAAC
448 ATTTAAATCTGAAAATTGAAAA-TTTTGAAAAGTAAGAAAAC
* * * *
1465131 GATTTTCAAAGTTTCTTACCTAGTAAACTATTTCAAAAATTTGTAAGTCCTTTGGGCCATCAGTA
1 GATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATA
* * * *
1465196 AGTCTTTCGAGCATGATAAGTAAATCCTTCGGGACATCTATAAGCCTTTCAATCAAGATGATAAG
66 AGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATAAG
* * * * * * * *
1465261 TCTTTCGAGACATCCAAAAGACCTTCGGTCATGATGTTTTCACATTTTTTTAAAAAAATGAGAAA
131 TCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACATGTTTTTAGAAAAATGAGAAA
* * * * *
1465326 ATTTTCTAATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAATAATTTTCAAAGTTTCT
196 AGTTTCTCATTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAATAATTTTCAAAGTTTCT
* * *
1465391 TACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTCGGGACATCAGTAAGTCTTTCGAGCATGT
261 TACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGA
* *
1465456 TGA-TAAGTCCCTCGGG
326 TGAGTAAATCCTTCGGG
1465472 CCATCAATAA
Statistics
Matches: 6007, Mismatches: 865, Indels: 502
0.81 0.12 0.07
Matches are distributed among these distances:
465 8 0.00
466 310 0.05
467 860 0.14
468 404 0.07
469 10 0.00
470 5 0.00
471 1 0.00
472 1 0.00
473 2 0.00
475 3 0.00
476 3 0.00
477 3 0.00
478 4 0.00
479 5 0.00
481 1 0.00
482 1 0.00
483 16 0.00
484 407 0.07
485 424 0.07
486 583 0.10
487 471 0.08
488 1140 0.19
489 796 0.13
490 107 0.02
491 5 0.00
493 2 0.00
495 2 0.00
498 3 0.00
499 2 0.00
501 3 0.00
502 2 0.00
503 5 0.00
504 1 0.00
505 2 0.00
506 1 0.00
510 1 0.00
511 2 0.00
512 1 0.00
513 4 0.00
514 3 0.00
516 4 0.00
517 1 0.00
518 4 0.00
522 2 0.00
524 2 0.00
526 3 0.00
527 3 0.00
528 164 0.03
529 50 0.01
530 170 0.03
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (488 bp):
GATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAATA
AGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATAAG
TCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACATGTTTTTAGAAAAATGAGAAA
AGTTTCTCATTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAATAATTTTCAAAGTTTCT
TACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGA
TGAGTAAATCCTTCGGGTCATATATAAGCCTTTCAAGAAAGATGATAAGTCCTTCAGGCCATCCA
TAAGACCTTCGGGCAGGATGTTTTCACATATTTTTAGAAAAATGAGAAATGTTTTTCATTTAAAT
CTGAAAATTGAAAATTTTGAAAAGTAAGAAAAC
Found at i:1461560 original size:224 final size:229
Alignment explanation
Indices: 1461177--1461854 Score: 752
Period size: 224 Copynumber: 2.9 Consensus size: 229
1461167 TCCATAAGAC
* * *
1461177 CTTCGTGCAGGATGTTTTCACATGTTTTTCGAAAAATGAGAAATGTTTCTCATCTAAATTTGAAA
1 CTTCG-GCAGGATGTTTTCACATGTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAA
* * * * *
1461242 ATTGAAAATTTTGAAATGTAAGAAAACGATTTTCATAGTTTCTTACCTAGTAAACTT-TTTCAAA
65 ATTGAAATTTTTGAAAAGTAAGAAAATGATTTTCAAAGTTTCTTACCTAGTAAA-TTATTTCCAA
* * * * * *
1461306 AATTGCTATGTCCTTTGGTCCATCAATAAGTCTTTTGAGCCTGATGAGTAAATCCTTTCAGGTCA
129 AATTGGTAAGTCCTTCGGGCCATCAATAAGTCTTTAGAGCATGATGAGTAAATCC-TTC-GGTCA
*
1461371 -CTATAAGCCTTTCGAGCAAGATTATAA-G-A-CC-T-
192 TCTATAAGCCTTTCGAGCAAGATGATAATGCATCCATA
* *
1461403 C-T-GGTAGGATGTTTTCACAGGTTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCT-AAA
1 CTTCGGCAGGATGTTTTCACATG-TTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAA
**
1461465 ATTTGAAATTTTTGAAAAGTAAGAAAATGAAATTCAAAGTTTCTTACCTCA-TAAATTATTTCCA
65 A-TTGAAATTTTTGAAAAGTAAGAAAATGATTTTCAAAGTTTCTTACCT-AGTAAATTATTTCCA
* * *
1461529 AAATTGGTAAGTCCTTCGGGCCATCAATAAGTCTGTAAAGCATGATGACTAAATCCTTCGAGTCA
128 AAATTGGTAAGTCCTTCGGGCCATCAATAAGTCTTTAGAGCATGATGAGTAAATCCTTCG-GTCA
* *
1461594 TCTATAAGCTTTTCGAGAAAGATGATAAGTCTTTCGGGCCATCCATAAGA
192 TCTATAAGCCTTTCGAGCAAGATGATAA-----T---G-CATCCAT---A
*
1461644 CTTCGGGCAGGGTGTTTTCACATGTTTTT-GAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAA
1 CTTC-GGCAGGATGTTTTCACATGTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAA
* * * *
1461708 AATGAAATTTTTGAAAAGTAAGAAAACT-ATTTTCAAAGTTTCTTACCTAGCAAACTATTTACAA
65 ATTGAAATTTTTGAAAAGTAAGAAAA-TGATTTTCAAAGTTTCTTACCTAGTAAATTATTTCCAA
* * * *
1461772 AATTGGTAAGTCCTTCGGGCCATCAGTAAGTCGTTCGAGCATGACGAGTAAATCCTTCGGGTCAT
129 AATTGGTAAGTCCTTCGGGCCATCAATAAGTCTTTAGAGCATGATGAGTAAATCCTTC-GGTCAT
*
1461837 ATATAAGCCTTTCGAGCA
193 CTATAAGCCTTTCGAGCA
1461855 TGACGAATAA
Statistics
Matches: 379, Mismatches: 43, Indels: 44
0.81 0.09 0.09
Matches are distributed among these distances:
222 1 0.00
223 29 0.08
224 156 0.41
225 2 0.01
226 1 0.00
233 1 0.00
235 1 0.00
236 2 0.01
237 1 0.00
241 2 0.01
242 156 0.41
243 11 0.03
244 16 0.04
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (229 bp):
CTTCGGCAGGATGTTTTCACATGTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAAA
TTGAAATTTTTGAAAAGTAAGAAAATGATTTTCAAAGTTTCTTACCTAGTAAATTATTTCCAAAA
TTGGTAAGTCCTTCGGGCCATCAATAAGTCTTTAGAGCATGATGAGTAAATCCTTCGGTCATCTA
TAAGCCTTTCGAGCAAGATGATAATGCATCCATA
Found at i:1461830 original size:22 final size:22
Alignment explanation
Indices: 1461796--1461872 Score: 54
Period size: 22 Copynumber: 3.6 Consensus size: 22
1461786 TCGGGCCATC
* *
1461796 AGTAAGTCGTTCGAGCATGACG
1 AGTAAATCCTTCGAGCATGACG
* *
1461818 AGTAAATCCTTCGGGTCAT-A-T
1 AGTAAATCCTTCGAG-CATGACG
*
1461839 A-T-AAGCCTTTCGAGCATGACG
1 AGTAAATCC-TTCGAGCATGACG
*
1461860 AATAAATCCTTCG
1 AGTAAATCCTTCG
1461873 GGTCATATAT
Statistics
Matches: 41, Mismatches: 8, Indels: 12
0.67 0.13 0.20
Matches are distributed among these distances:
19 7 0.17
20 7 0.17
21 2 0.05
22 18 0.44
23 7 0.17
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (22 bp):
AGTAAATCCTTCGAGCATGACG
Found at i:1461851 original size:42 final size:42
Alignment explanation
Indices: 1461805--1461894 Score: 162
Period size: 42 Copynumber: 2.1 Consensus size: 42
1461795 CAGTAAGTCG
*
1461805 TTCGAGCATGACGAGTAAATCCTTCGGGTCATATATAAGCCT
1 TTCGAGCATGACGAATAAATCCTTCGGGTCATATATAAGCCT
1461847 TTCGAGCATGACGAATAAATCCTTCGGGTCATATATAAGCCT
1 TTCGAGCATGACGAATAAATCCTTCGGGTCATATATAAGCCT
*
1461889 TCCGAG
1 TTCGAG
1461895 AAAGCTGATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (42 bp):
TTCGAGCATGACGAATAAATCCTTCGGGTCATATATAAGCCT
Found at i:1462849 original size:467 final size:466
Alignment explanation
Indices: 1462181--1466898 Score: 3620
Period size: 467 Copynumber: 9.9 Consensus size: 466
1462171 ACCTTCAGGC
* * * *
1462181 AGGATGTTTTCACA-TGTTTTTAGAAAAATGAGAAATGTTTTTCATTTAAATCTGAAAATTGAAA
1 AGGATGTTTTCACAGT-TTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATATGAAAATTG-AA
* *
1462245 ATTTTGAAAAGTAAGAAAATAATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTA
64 ATTTTGAAAAGTAAGAAAATGATATTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTA
* * * * * * *
1462310 AGTCGTTCGGGCTATCAGTAAGTCTTTCTAGCATGATAAGTAAATGCTTCGCGTCATCTACAAGC
129 AGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGC
* * * * * * *
1462375 CTTTTGAGCAAGATGGTAAATTCTTCGACCAATCTATAAGACCTTCGTGCAGGATGTTTTCACAT
194 CTTTCGAGCAAGATGATAAGTCCTTCGGCC-ATCCATAAGACCTTCGGGCAGGATGTTTTCACAT
* *
1462440 GTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATTTGAAAATTGAAATTTTTGAAATGTAAGA
258 GTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAAATTGAAATTTTTGAAAAGTAAGA
* *
1462505 AAATGATTTTCATAGTTTCTTACCTAGTAAAC-ATTTCAAAAATTGGTATGTCCTTTGGTCCATC
323 AAATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCAAAAATTGGTAAGTCCTTTGG-CCATC
* * * * *
1462569 AATAAGTCTTTTGACCATGATGAGTAAATCCTTTCAGGTCA-CTATAAGCCTTTCGAGCAAGATT
387 AGTAAGTCTTTTGAGCATGATGAGTAAATCC-TTCAGGTCATATATAAGCCTTTCGAGCAATATG
1462633 ATAA-TACC-TCTGGT
451 ATAAGTACCATCTGGT
*
1462647 AGGATGTTTTCACAGGTTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCT-AAAATTTGAA
1 AGGATGTTTTCACA-GTTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATATGAAAA-TTGAA
* * *
1462711 ATTTGTGAAAAGTAAGAAAATGACATTCAAAGTTTCTTACCTCA-TAAATTATTTCCAAAACTGG
64 ATTT-TGAAAAGTAAGAAAATGATATTCAAAGTTTCTTACCT-AGTAAACTATTTCCAAAATTGG
* * * *
1462775 TAAGTCCTTCGGGCCATCAATAAGTCTGTCGAGCATGATGACTAAATCCTTCGAGTCATCTATAA
127 TAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAA
* * * * *
1462840 GCTTTTTGAGCAAGATGATAAGTCTTTCGGGCCATCCATAAGA-CTACGGGCAGGGTGTTTTCAC
192 GCCTTTCGAGCAAGATGATAAGTCCTTC-GGCCATCCATAAGACCTTCGGGCAGGATGTTTTCAC
* *
1462904 ATGTTTTTTGAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAAAATGAAATTTTTGAAAAGTAA
256 ATGTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAAATTGAAATTTTTGAAAAGTAA
* * ** * *
1462969 GAAAACT-ATTTTCAAACTTTCTTTCCTACCAAACTATTT-ACAAAATTCGTAAGTCCTTCGGGC
321 GAAAA-TGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCA-AAAATTGGTAAGTCCTT-TGGC
* * *
1463032 CATCAGTAAGTCGTTTGAGCATGATGAGTAAATCCTTC-GTGTCATATATAAGCCTTTTGAGGAA
383 CATCAGTAAGTCTTTTGAGCATGATGAGTAAATCCTTCAG-GTCATATATAAGCCTTTCGAGCAA
* *
1463096 GATGATAAGTTATTCGGGCTATTCATAAGTCTTT
447 TATGATAAG-TA--C---C-A-TC-T--G---GT
* * *
1463130 AGGGCATGATGTTTTCACA-TCTTTTTCGAAAAATGTA-AAAAGTTTTTCATTTAAATCTAAAAA
1 A--G---GATGTTTTCACAGT-TTTTTCGAAAAATG-AGAAAAGTTTCTCATTTAAATATGAAAA
* *
1463193 TTGAAATTTTTGAAAATTAAGAAAAT-AAATTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAA
59 TTGAAA-TTTTGAAAAGTAAGAAAATGATA-TTCAAAGTTTCTTACCTAGTAAACTATTTCCAAA
* * *
1463257 ATTAGTAAGT-CTT-------TC---AAG-----C--G--TGCTGAGTAAATCCTTCGGATCATC
122 ATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATC
* * * * * *
1463302 TATAAGCATTTCAAGCAAGATGATAAGTCTTTTCGGCTAT-CATATGACCTTCGGGCAGAATGTT
187 TATAAGCCTTTCGAGCAAGATGATAAGTC-CTTCGGCCATCCATAAGACCTTCGGGCAGGATGTT
* * *
1463366 TTCACATGTGCTTT-GAAAAATGAGAAAAGTTTCTCATTTAAATATGAAAATTGAAATTTTTAAA
251 TTCACATGT-TTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAAATTGAAATTTTTGAA
* * * * * * *
1463430 AATTAAGAAAATAATTTTCAATGTTTCTTACCTGGTAAATTATTTCCAAAATTGGCAAGTCCTTC
315 AAGTAAGAAAATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCAAAAATTGGTAAGTCCTT-
* * * * *
1463495 TGGCCATTAGTAAGTCTTTCGAGCATAATGAGTAAATACTTCGGGTCATATATAAGCCTTTCGAG
379 TGGCCATCAGTAAGTCTTTTGAGCATGATGAGTAAATCCTTCAGGTCATATATAAGCCTTTCGAG
* * **
1463560 GAATATAATAAGTTCTTCGGGCCATCCATAAGTCTTTT
444 CAATATGATAAG----T------A-CC---A-TCTGGT
* * * * *
1463598 GGGCATGATGTTTCCCA-TCCTTTTTCGAAAAATGAGAAAAGTTTCTAATTTAAATCTAAAAATT
1 AGG-ATG-T-TTTCACAGT--TTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATATGAAAATT
* * ** * * * **
1463662 GAAACTTTTTAAAAGCAAGAAAACAATTTTAAAAGTTTCTTACCTAATAAACTATAACCAAAATT
61 GAAA-TTTTGAAAAGTAAGAAAATGATATTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATT
* ** * * *
1463727 AGTAAGTCCTTCATGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATACTTCGTGTCATCTGT
125 GGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTAT
** * * * * * * * *
1463792 AAGTATTTCAAGCAAGTTGATAAGTCCCTTGGGCCATCAATAAGACCTTTGAGAATGATGTTTTC
190 AAGCCTTTCGAGCAAGATGATAAGT-CCTTCGGCCATCCATAAGACCTTCGGGCAGGATGTTTTC
* ** * * * *
1463857 ACATATTTGTT-GAAAAATGTCAAAAATTTCTCATTTAAATCTAAAAATTGAAAATTTAGAAAAG
254 ACATGTTT-TTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAAATTGAAATTTTTGAAAAG
* * * * * *
1463921 TAAGAAAATGATTCTCAAAGTTTCTTACCTCG-AACACAATTTCCAGAATTGGTAAGT-CTTGGG
318 TAAGAAAATGATTTTCAAAGTTTCTTACCTAGTAA-ACTATTTCAAAAATTGGTAAGTCCTT-TG
* * * * * * * * * *
1463984 GACCTTCAGTAAGTCTTTCGATCATGATGTGTAAATACTTCTGGGCATCTATAAGCCTTTCAAGA
381 G-CCATCAGTAAGTCTTTTGAGCATGATGAGTAAATCCTTCAGGTCATATATAAGCCTTTCGAGC
* *
1464049 AATATGATAAGTCCTTCGTGCCATCAATAAGACATT
445 AATATGATAA-------GTACCATC--T--G---GT
* * *
1464085 CAGGAAATATGTTTTCACATGTTTTTT-GAAAAATGAGAAATGTTTCTCGTTGAAATATGAAAAT
1 -AGG----ATGTTTTCACA-GTTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATATGAAAAT
* * * * **
1464149 TGAAATTTTTAGAAAGTAAAAAAAATGATTTTAAAAGTTTCTTAGATAGTAAACTATTT-CAAAA
60 TGAAATTTTGA-AAAGT-AAGAAAATGATATTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAA
* * * * *
1464213 TTTGATATGTCCTTTGGGCCATCAGAAAGTTTTTCGAGCATGATGAGTAAATCCTTCGGGTCA-C
123 -TTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATC
* *
1464277 TATAAGCCTTTCGAGCAAGATGATAAGTCCTTTGGGCCAACCATAAGACCTTCGGGCAGGATGTT
187 TATAAGCCTTTCGAGCAAGATGATAAGTCC-TTCGGCCATCCATAAGACCTTCGGGCAGGATGTT
* * *
1464342 TTCACATATTTTTCGAAACAATGAGAAAGGTTTCTCATTTAAATCTGAAAATTGAAAATTTTGAA
251 TTCACATGTTTTTCGAAA-AATGAGAAAAGTTTCTCATTTAAATCTGAAAATTGAAATTTTTGAA
* ** *
1464407 AAGTAAGAAAATAATTTTCAAAGTTTAATACCTAGTAAACTATTATC-AAAATTGGTACGTCCTT
315 AAGTAAGAAAATGATTTTCAAAGTTTCTTACCTAGTAAACTATT-TCAAAAATTGGTAAGTCCTT
* ** * * * * *
1464471 TGGGTCATCAGTAAACCTTTTCAACATGATGAGTAAATCCTTCGGGTTATATATAAGCCTTTCAA
379 T-GGCCATCAGTAAGTCTTTTGAGCATGATGAGTAAATCCTTCAGGTCATATATAAGCCTTTCGA
1464536 GCAATATGATAAGTCCTTCGGGTCATCCATAAGGTCTTCGAGT
443 GCAATATGATAA---------GT-A-CC---A--TC-T-G-GT
* * ***
1464579 AGGATGTTTTCACA-TATTTTCCAAAAAATGAGAAAAAAATCTCATTTAAATATGAAAATTGAAT
1 AGGATGTTTTCACAGT-TTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATATGAAAATTGAA-
* * * * *
1464643 TTTTTCTATAAGTAAGAAAATGAT-TCCCAAAGTTGT-TTACCTAGTAAACTATTTCTAAAATTG
64 ATTTT-GAAAAGTAAGAAAATGATAT-TCAAAGTT-TCTTACCTAGTAAACTATTTCCAAAATTG
* * * * * * *
1464706 GTAAGTCCCTCGGCCCATCAGAAAGCCTTTTGAGCATGATGGGTAAATCCTTCGGGTCATTTATA
126 GTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATA
* * *
1464771 AGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCATTCCATAGGACCTT-GAGGCTGGATGTTTTC
191 AGCCTTTCGAGCAAGATGATAAGTCCTTCGGCCA-TCCATAAGACCTTCG-GGCAGGATGTTTTC
* * *
1464835 ACATGTTTTTCAAAAAATGAG-AAAGTTTCTCATTTAAAATCTGAAAAATGAAATTTCTGAAAA-
254 ACATGTTTTTCGAAAAATGAGAAAAGTTTCTCATTT-AAATCTGAAAATTGAAATTTTTGAAAAG
* * * *
1464898 TAAGAAAATGATTTTCAAAGTTTGTTACCAAGTAAACTATTTCGAAAATTGGTAAGTCCCTTGAG
318 TAAGAAAATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCAAAAATTGGTAAGTCCTTTG-G
* * ** ** * * * *
1464963 CATTATGAGTAAAACCTTCCG-G--TAAT--CTATAAGCCTTTC-GAG-CGATATGATAAGTTCT
382 C--CATCAGT-AAGTCTTTTGAGCATGATGAGTA-AATCC-TTCAG-GTC-ATAT-ATAAG-CCT
** ** * ** *
1465021 TAAG-GCAAT-CCATAAG-ACCTTCAAGC
438 TTCGAGCAATATGATAAGTACCATCTGGT
* * * * * *
1465047 AGGATGTTTTCATA-TGTTTTGCAAAAAATGATAAAACTTTCTCATTTAAATATGAAAATTAAAA
1 AGGATGTTTTCACAGT-TTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATATGAAAATTGAAA
* * * * *
1465111 TTTTTGAAAAGGAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCAAAAATTTGTA
65 -TTTTGAAAAGTAAGAAAATGATATTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTA
* * *
1465176 AGTCCTTTGGGCCATCAGTAAGTCTTTCGAGCATGATAAGTAAATCCTTCGGGACATCTATAAGC
129 AGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGC
* * * * * * *
1465241 CTTTCAATCAAGATGATAAGTCTTTCGAGACATCCAAAAGACCTTCGGTCATGATGTTTTCACAT
194 CTTTCGAGCAAGATGATAAGTCCTTCG-GCCATCCATAAGACCTTCGGGCAGGATGTTTTCACAT
* ** * * * *
1465306 TTTTTTAAAAAAATGAGAAAATTTTCTAATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGA
258 GTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAAATTGAAATTTTTGAAAAGTAAGA
* * * * *
1465371 AAATAATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTCGGGACATC
323 AAATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCAAAAATTGGTAAGTCCTT-TGGCCATC
* * * * *
1465436 AGTAAGTCTTTCGAGCATGTTGA-TAAGTCCCTC-GG----------G-C---C-ATC---A--A
387 AGTAAGTCTTTTGAGCATGATGAGTAAATCCTTCAGGTCATATATAAGCCTTTCGAGCAATATGA
* * *
1465479 TAA-TACCTTCGGGC
452 TAAGTACCATCTGGT
* * * *
1465493 AGGATGTTTTCACA-TTTTTTTGAAAAATAAGAAAATTTTCTCATTTAAATATGAAAATTTAAAA
1 AGGATGTTTTCACAGTTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATATGAAAA-TTGAAA
* * * * *
1465557 TTTTGAAAAGTAAGAAAATGAT-TCTAAAAGTTTCTTACCTAGTATATTATTAT-TAAAATTGGG
65 TTTTGAAAAGTAAGAAAATGATAT-TCAAAGTTTCTTACCTAGTAAACTATT-TCCAAAATTGGT
* * * * * * *
1465620 AAGTCCTTCGGGTCATCAATAAGTTTTTTC-TGCATGATGAGTAAATTCTTCGGGTTATATATAA
128 AAGTCCTTCGGGCCATCAGTAAG-TCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAA
* * * * **
1465684 GCCTTTCAAGCAATATGATAAGTCCTTCGGGTCATCCATATGGTCTTCGGGCAGGATGTTTTCAC
192 GCCTTTCGAGCAAGATGATAAGTCCTTC-GGCCATCCATAAGACCTTCGGGCAGGATGTTTTCAC
* * * *
1465749 AT-ATTTTCTGAAAAATAAGAAATA-TATATCATTTAAATCTGAAAATTGAAATTTTTGAAAAGT
256 ATGTTTTTC-GAAAAATGAGAAA-AGTTTCTCATTTAAATCTGAAAATTGAAATTTTTGAAAAGT
** * * * * * *
1465812 AAGAAAATGATTCCCAAAGTTTCGTATCTAGTAAACTATTTCTAAAATTTGTAAGTCATTCGGCC
319 AAGAAAATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCAAAAATTGGTAAGTCCTTTGGCC
* * * * **
1465877 TATCAGTGAGTCTTTTGAGCATGATGTGTAAATCCATC-GGATCATCTATAAGCCTTTTAAGCAA
384 -ATCAGTAAGTCTTTTGAGCATGATGAGTAAATCCTTCAGG-TCATATATAAGCCTTTCGAGCAA
* * * *
1465941 GAGGATAAGTCCTTCGGGCGATTTATAAGTCCTTCAGGC
447 TATGATAAG---TAC---C--------A-T-C-T--GGT
* * * * * *
1465980 AGGATGTTTTCAC-GTGTTTTTTGAAAAACGAGAAACGTTTCTCCTTTAAATTTGAGAATTGAAA
1 AGGATGTTTTCACAGT-TTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATATGAAAATTG-AA
* * * * *
1466044 ATTTTGAAAAGTAATAAAACGATTTTCAAAGTTTCTTACCTAGTAAAGTATTTTCAAAATTGGTA
64 ATTTTGAAAAGTAAGAAAATGATATTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTA
* *
1466109 AGTCCTTTGGGCCATCAGTAAGTCTTTCGAGAATGATGAGTAAATCCTTCGGGTCATCTATAAGC
129 AGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGC
* * * * * * * *
1466174 CTTTAGAGCAAGATGATAAGTCCTTCGGGGCATCCATAAGTCCATCAGACTGGATGTTTTCATAT
194 CTTTCGAGCAAGATGATAAGTCCTTC-GGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACAT
* * * * *
1466239 ATTTTTCGAAAAATAAGAAAGGTTTCTCATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGA
258 GTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAAATTGAAATTTTTGAAAAGTAAGA
* * * *
1466304 AAACT-ATTTTCAAAGTTTATTACCTAGTAAATTATTATC-AAAATTTGTAAGTCCTTCGGGCCA
323 AAA-TGATTTTCAAAGTTTCTTACCTAGTAAACTATT-TCAAAAATTGGTAAGTCCTT-TGGCCA
* * * * * * *
1466367 TCATTAAGTCTTTTGAGCTTGTTGTGTAAATCCTTCGAAGTTATATATAAGCCTTTCAAGCAATA
385 TCAGTAAGTCTTTTGAGCATGATGAGTAAATCCTTC-AGGTCATATATAAGCCTTTCGAGCAATA
*
1466432 TGATAAGGCCTTCGGCTCATCCATAAGGT
449 TGATAA-G---T--AC-CAT-C-T--GGT
* ** * * * * * *
1466461 ATTCGGGTAAGATGTTTTCATAAATTTTCCGAAAAAAAGATAAAAATATC-AATTTAAATATGAA
1 A-----G---GATGTTTTCACAGTTTTTTCG-AAAAATGAGAAAAGTTTCTCATTTAAATATGAA
* * * *
1466525 TATTGAAATTTTTGAAAAGTAAGAAAATGAT-TCCCAAAGTTTCGTACCTAGTAAACTATTTCTA
57 AATTGAAA-TTTTGAAAAGTAAGAAAATGATAT-TCAAAGTTTCTTACCTAGTAAACTATTTCCA
** * *
1466589 AAATTGGTAAGTCCTTCGACCCATCAGTAAGTCTTTCGAGCTTGATGTGTAAATCCTTCGGGTCA
120 AAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCA
* * *
1466654 TCTATAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCGTAAGACC-TCCGGTAGGATG
185 TCTATAAGCCTTTCGAGCAAGATGATAAGTCCTTC-GGCCATCCATAAGACCTTCGGGCAGGATG
* * * *
1466718 TTTTCACAGGTTTTTTCAAAAAATGAGAAACGTTTCTCATTTAAATCTAAAAATTGAAATTTTTG
249 TTTTCACATG-TTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAAATTGAAATTTTTG
* * * *
1466783 AAAAGTAAAAAAATGATTTTCAAAGTTTCTTACCTCGTGAATTATTTCAAAAATCT-GTAAGTCC
313 AAAAGTAAGAAAATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCAAAAAT-TGGTAAGTCC
** * * *
1466847 TTTCGGCCATCAAAAAGTCTGTCGAGCATGATGACTAAATCCTTCAGGTCAT
377 TTT-GGCCATCAGTAAGTCTTTTGAGCATGATGAGTAAATCCTTCAGGTCAT
1466899 TTAAATATGA
Statistics
Matches: 3448, Mismatches: 557, Indels: 472
0.77 0.12 0.11
Matches are distributed among these distances:
444 8 0.00
445 310 0.09
446 50 0.01
450 1 0.00
453 1 0.00
455 1 0.00
457 1 0.00
458 1 0.00
462 2 0.00
463 1 0.00
464 3 0.00
465 10 0.00
466 162 0.05
467 789 0.23
468 159 0.05
469 6 0.00
470 2 0.00
471 6 0.00
472 1 0.00
473 1 0.00
474 5 0.00
475 4 0.00
476 6 0.00
477 3 0.00
478 4 0.00
479 3 0.00
480 3 0.00
481 9 0.00
482 2 0.00
483 4 0.00
484 3 0.00
485 2 0.00
486 10 0.00
487 201 0.06
488 750 0.22
489 777 0.23
490 117 0.03
491 16 0.00
492 1 0.00
493 5 0.00
494 2 0.00
495 1 0.00
496 2 0.00
497 1 0.00
498 2 0.00
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (466 bp):
AGGATGTTTTCACAGTTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATATGAAAATTGAAAT
TTTGAAAAGTAAGAAAATGATATTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAG
TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGCCT
TTCGAGCAAGATGATAAGTCCTTCGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACATGTT
TTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAAATTGAAATTTTTGAAAAGTAAGAAAA
TGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCAAAAATTGGTAAGTCCTTTGGCCATCAGTA
AGTCTTTTGAGCATGATGAGTAAATCCTTCAGGTCATATATAAGCCTTTCGAGCAATATGATAAG
TACCATCTGGT
Found at i:1463425 original size:223 final size:224
Alignment explanation
Indices: 1463056--1463482 Score: 587
Period size: 223 Copynumber: 1.9 Consensus size: 224
1463046 TTGAGCATGA
* ** *
1463056 TGAGTAAATCCTTCGTGTCATATATAAGCCTTTTGAGGAAGATGATAAGTTATTCGGGCTATTCA
1 TGAGTAAATCCTTCGTGTCATATATAAGCATTTCAAGCAAGATGATAAGTTATTCGGGCTATTCA
* * * *
1463121 TAAGTCTTTAGGGCATGATGTTTTCACATCTTTTTCGAAAAATGTAAAAAGTTTTTCATTTAAAT
66 TAAGACCTTAGGGCATGATGTTTTCACATCTCTTTCGAAAAATGTAAAAAGTTTCTCATTTAAAT
* *
1463186 CTAAAAATTGAAATTTTTGAAAATTAAGAAAATAAATTTCAAAGTTTCTTACCTAGTAAACTATT
131 ATAAAAATTGAAATTTTTAAAAATTAAGAAAATAAATTTCAAAGTTTCTTACCTAGTAAACTATT
1463251 TCCAAAATTAGTAAGTCTTTCAAGCGTGC
196 TCCAAAATTAGTAAGTCTTTCAAGCGTGC
* *
1463280 TGAGTAAATCCTTCG-GATCATCTATAAGCATTTCAAGCAAGATGATAAGTCTTTTC-GGCTA-T
1 TGAGTAAATCCTTCGTG-TCATATATAAGCATTTCAAGCAAGATGATAAGT-TATTCGGGCTATT
* * *
1463342 CATATGACCTTCGGGCA-GAATGTTTTCACATGTGCTTT-GAAAAATG-AGAAAAGTTTCTCATT
64 CATAAGACCTTAGGGCATG-ATGTTTTCACATCT-CTTTCGAAAAATGTA-AAAAGTTTCTCATT
* * * *
1463404 TAAATATGAAAATTGAAATTTTTAAAAATTAAGAAAATAATTTTCAATGTTTCTTACCTGGTAAA
126 TAAATATAAAAATTGAAATTTTTAAAAATTAAGAAAATAAATTTCAAAGTTTCTTACCTAGTAAA
*
1463469 TTATTTCCAAAATT
191 CTATTTCCAAAATT
1463483 GGCAAGTCCT
Statistics
Matches: 178, Mismatches: 20, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
222 2 0.01
223 121 0.68
224 51 0.29
225 4 0.02
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.37
Consensus pattern (224 bp):
TGAGTAAATCCTTCGTGTCATATATAAGCATTTCAAGCAAGATGATAAGTTATTCGGGCTATTCA
TAAGACCTTAGGGCATGATGTTTTCACATCTCTTTCGAAAAATGTAAAAAGTTTCTCATTTAAAT
ATAAAAATTGAAATTTTTAAAAATTAAGAAAATAAATTTCAAAGTTTCTTACCTAGTAAACTATT
TCCAAAATTAGTAAGTCTTTCAAGCGTGC
Found at i:1464323 original size:41 final size:42
Alignment explanation
Indices: 1464244--1464328 Score: 102
Period size: 41 Copynumber: 2.0 Consensus size: 42
1464234 TCAGAAAGTT
* * *
1464244 TTTCGAGCATGATGAGTAAATCCTTCGGGTCACTATAAG-CC
1 TTTCGAGCAAGATGAGTAAATCCTTCGGGCCACCATAAGACC
* *
1464285 TTTCGAGCAAGATGA-TAAGTCCTTTGGGCCAACCATAAGACC
1 TTTCGAGCAAGATGAGTAAATCCTTCGGGCC-ACCATAAGACC
1464327 TT
1 TT
1464329 CGGGCAGGAT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
40 12 0.32
41 21 0.57
42 4 0.11
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (42 bp):
TTTCGAGCAAGATGAGTAAATCCTTCGGGCCACCATAAGACC
Found at i:1464568 original size:41 final size:41
Alignment explanation
Indices: 1464465--1464568 Score: 97
Period size: 41 Copynumber: 2.5 Consensus size: 41
1464455 AAATTGGTAC
* *
1464465 GTCCTTTGGGTCATCAGTAAACCTTTTCAACATGATGAGTAA
1 GTCCTTCGGGTCATCA-TAAGCCTTTTCAACATGATGAGTAA
* * *
1464507 ATCCTTCGGGTTATATATAAGCC-TTTCAAGCAAT-ATGA-TAA
1 GTCCTTCGGGTCAT-CATAAGCCTTTTCAA-C-ATGATGAGTAA
1464548 GTCCTTCGGGTCATCCATAAG
1 GTCCTTCGGGTCAT-CATAAG
1464569 GTCTTCGAGT
Statistics
Matches: 50, Mismatches: 9, Indels: 7
0.76 0.14 0.11
Matches are distributed among these distances:
41 26 0.52
42 21 0.42
43 3 0.06
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (41 bp):
GTCCTTCGGGTCATCATAAGCCTTTTCAACATGATGAGTAA
Found at i:1464608 original size:489 final size:486
Alignment explanation
Indices: 1463263--1465454 Score: 2209
Period size: 489 Copynumber: 4.5 Consensus size: 486
1463253 CAAAATTAGT
* * * * *
1463263 AAGTCTTTCAAGCGTGCTGAGTAAATCCTTCGGATCATCTATAAGCATTTCAAGCAAGATGATAA
1 AAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGCCTTTCAAGCAAGATGATAA
* * * * * *
1463328 GTCTTTTCGGCTAT-CATATGACCTTCGGGCAGAATGTTTTCACATGTGCTTTGAAAAATGAGAA
66 GTCCTTTGGGC-ATCCATAAGACCTTCGGGCAGGATGTTTTCACATAT-TTTTGAAAAATGAGAA
* * * * *
1463392 AAGTTTCTCATTTAAATATGAAAATTGAAATTTTTAAAAATTAAGAAAATAATTTTCAATGTTTC
129 AAGTTTCTCATTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAATAATTTTCAAAGTTTC
* * * *
1463457 TTACCTGGTAAATTATTTCCAAAATTGGCAAGTCCTTCT-GGCCATTAGTAAGTCTTTCGAGCAT
194 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTT-TGGGCCATCAGTAAGTCTTTCGA-CAT
* * * * *
1463521 AATGAGTAAATACTTCGGGTCATATATAAGCCTTTCGAGGAATATAATAAGTTCTTCGGGCCATC
257 GATGAGTAAATACTTCGGGTCATATATAAGCCTTTCAAGCAATATGATAAGTCCTTCGGGCCATC
* * * * * * * *
1463586 CATAAGTCTTTTGGGCATGATG-TTTCCCATCCTTTTTCGAAAAATGAGAAAAGTTTCTAATTTA
322 CATAAGTCATTCGAGCAGGATGTTTTCACAT-GTTTTTCAAAAAATGAGAAAAGTTTCTCATTTA
* * * * *
1463650 AATCTAAAAATTGAAACTTTTTA-AAAGCAAGAAAACA--ATTTTAAAAGTTTCTTACCTAATAA
386 AATATGAAAATTGAAA-TTTTTAGAAAGTAA-AAAAAATGATTTTAAAAGTTTCTTACCTAGTAA
** * * ** *
1463712 ACTATAACCAAAATTAGTAAGTCCTTCATGCCATCAGT
449 ACTATTTCAAAAATTTGTAAGTCCTTCGGGCCATCAGA
* * * ** *
1463750 AAGTCTTTCGAGCATGATGAGTAAATACTTCGTGTCATCTGTAAGTATTTCAAGCAAGTTGATAA
1 AAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGCCTTTCAAGCAAGATGATAA
* * * * * * **
1463815 GTCCCTTGGGCCATCAATAAGACCTTTGAGAATGATGTTTTCACATATTTGTTGAAAAATGTCAA
66 GTCCTTTGGG-CATCCATAAGACCTTCGGGCAGGATGTTTTCACATATTT-TTGAAAAATGAGAA
* * * * *
1463880 AAATTTCTCATTTAAATCTAAAAATTGAAAATTTAGAAAAGTAAGAAAATGATTCTCAAAGTTTC
129 AAGTTTCTCATTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAATAATTTTCAAAGTTTC
* * * * *
1463945 TTACCTCG-AACACAATTTCCAGAATTGGTAAGT-CTTGGGGACCTTCAGTAAGTCTTTCGATCA
194 TTACCTAGTAA-ACTATTTCCAAAATTGGTAAGTCCTTTGGG-CCATCAGTAAGTCTTTCGA-CA
* * * *
1464008 TGATGTGTAAATACTTCTGGG-CATCTATAAGCCTTTCAAGAAATATGATAAGTCCTTCGTGCCA
256 TGATGAGTAAATACTTC-GGGTCATATATAAGCCTTTCAAGCAATATGATAAGTCCTTCGGGCCA
* * * ** ** * *
1464072 TCAATAAGACATTC-AGGAAATATGTTTTCACATGTTTTTTGAAAAATGAGAAATGTTTCTCGTT
320 TCCATAAGTCATTCGA-GCAGGATGTTTTCACATGTTTTTCAAAAAATGAGAAAAGTTTCTCATT
* **
1464136 GAAATATGAAAATTGAAATTTTTAGAAAGTAAAAAAAATGATTTTAAAAGTTTCTTAGATAGTAA
384 TAAATATGAAAATTGAAATTTTTAGAAAGTAAAAAAAATGATTTTAAAAGTTTCTTACCTAGTAA
* *
1464201 ACTATTTC-AAAATTTGATATGTCCTTTGGGCCATCAGA
449 ACTATTTCAAAAATTTG-TAAGTCCTTCGGGCCATCAGA
* *
1464239 AAGTTTTTCGAGCATGATGAGTAAATCCTTCGGGTCA-CTATAAGCCTTTCGAGCAAGATGATAA
1 AAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGCCTTTCAAGCAAGATGATAA
*
1464303 GTCCTTTGGGCCAACCATAAGACCTTCGGGCAGGATGTTTTCACATATTTTTCGAAACAATGAGA
66 GTCCTTTGGG-CATCCATAAGACCTTCGGGCAGGATGTTTTCACATATTTTT-GAAA-AATGAGA
*
1464368 AAGGTTTCTCATTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAATAATTTTCAAAGTTT
128 AAAGTTTCTCATTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAATAATTTTCAAAGTTT
** * * ** *
1464433 AATACCTAGTAAACTATTAT-CAAAATTGGTACGTCCTTTGGGTCATCAGTAAACCTTTTCAACA
193 CTTACCTAGTAAACTATT-TCCAAAATTGGTAAGTCCTTTGGGCCATCAGTAAGTC-TTTCGACA
* * *
1464497 TGATGAGTAAATCCTTCGGGTTATATATAAGCCTTTCAAGCAATATGATAAGTCCTTCGGGTCAT
256 TGATGAGTAAATACTTCGGGTCATATATAAGCCTTTCAAGCAATATGATAAGTCCTTCGGGCCAT
* * * ***
1464562 CCATAAGGTC-TTCGAGTAGGATGTTTTCACATATTTTCCAAAAAATGAGAAAAAAATCTCATTT
321 CCATAA-GTCATTCGAGCAGGATGTTTTCACATGTTTTTCAAAAAATGAGAAAAGTTTCTCATTT
* ** * ***
1464626 AAATATGAAAATTGAATTTTTTCTATAAGT-AAGAAAATGATTCCCAAAGTTGT-TTACCTAGTA
385 AAATATGAAAATTGAAATTTTTAGA-AAGTAAAAAAAATGATTTTAAAAGTT-TCTTACCTAGTA
* * * *
1464689 AACTATTTCTAAAATTGGTAAGTCCCTCGGCCCATCAGA
448 AACTATTTCAAAAATTTGTAAGTCCTTCGGGCCATCAGA
* * * * *
1464728 AAGCCTTTTGAGCATGATGGGTAAATCCTTCGGGTCATTTATAAGCCTTTCGAGCAAGATGATAA
1 AAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGCCTTTCAAGCAAGATGATAA
* * * * *
1464793 GTCCTTCGGGCATTCCATAGGACCTT-GAGGCTGGATGTTTTCACATGTTTTTCAAAAAATGAG-
66 GTCCTTTGGGCA-TCCATAAGACCTTCG-GGCAGGATGTTTTCACATATTTTT-GAAAAATGAGA
* *
1464856 AAAGTTTCTCATTTAAAATCTGAAAAATG-AAATTTCTGAAAA-TAAGAAAATGATTTTCAAAGT
128 AAAGTTTCTCATTT-AAATCTGAAAATTGAAAATTT-TGAAAAGTAAGAAAATAATTTTCAAAGT
* * * * *
1464919 TTGTTACCAAGTAAACTATTTCGAAAATTGGTAAGTCCCTTGAG-CAT---T-A-----T-G--A
191 TTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTTGGGCCATCAGTAAGTCTTTCGACA
* * * * * * * ** *
1464971 -G-T-A--AAA-CCTTCCGGTAATCTATAAGCCTTTCGAGCGATATGATAAGTTCTTAAGGCAAT
256 TGATGAGTAAATACTTCGGGTCATATATAAGCCTTTCAAGCAATATGATAAGTCCTTCGGGCCAT
* * * * * * *
1465030 CCATAAGACCTTCAAGCAGGATGTTTTCATATGTTTTGCAAAAAATGATAAAACTTTCTCATTTA
321 CCATAAGTCATTCGAGCAGGATGTTTTCACATGTTTTTCAAAAAATGAGAAAAGTTTCTCATTTA
* * * * *
1465095 AATATGAAAATTAAAATTTTT-GAAAAG-GAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAA
386 AATATGAAAATTGAAATTTTTAG-AAAGTAAAAAAAATGATTTTAAAAGTTTCTTACCTAGTAAA
* *
1465158 CTATTTCAAAAATTTGTAAGTCCTTTGGGCCATCAGT
450 CTATTTCAAAAATTTGTAAGTCCTTCGGGCCATCAGA
* * *
1465195 AAGTCTTTCGAGCATGATAAGTAAATCCTTCGGGACATCTATAAGCCTTTCAATCAAGATGATAA
1 AAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGCCTTTCAAGCAAGATGATAA
* * * * * *
1465260 GT-CTTTCGAGACATCCAAAAGACCTTCGGTCATGATGTTTTCACATTTTTTTAAAAAAATGAGA
66 GTCCTTT-G-GGCATCCATAAGACCTTCGGGCAGGATGTTTTCACATATTTTT-GAAAAATGAGA
* * * * *
1465324 AAATTTTCTAATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAATAATTTTCAAAGTTT
128 AAAGTTTCTCATTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAATAATTTTCAAAGTTT
* * *
1465389 CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTCGGGACATCAGTAAGTCTTTCGAGCAT
193 CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTTGGGCCATCAGTAAGTCTTTCGA-CAT
1465454 G
257 G
1465455 TTGATAAGTC
Statistics
Matches: 1413, Mismatches: 236, Indels: 116
0.80 0.13 0.07
Matches are distributed among these distances:
466 4 0.00
467 184 0.13
468 193 0.14
469 6 0.00
471 1 0.00
472 2 0.00
473 2 0.00
474 1 0.00
477 1 0.00
478 1 0.00
479 1 0.00
482 1 0.00
483 2 0.00
484 1 0.00
487 90 0.06
488 404 0.29
489 418 0.30
490 101 0.07
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (486 bp):
AAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGCCTTTCAAGCAAGATGATAA
GTCCTTTGGGCATCCATAAGACCTTCGGGCAGGATGTTTTCACATATTTTTGAAAAATGAGAAAA
GTTTCTCATTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAATAATTTTCAAAGTTTCTT
ACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTTGGGCCATCAGTAAGTCTTTCGACATGATG
AGTAAATACTTCGGGTCATATATAAGCCTTTCAAGCAATATGATAAGTCCTTCGGGCCATCCATA
AGTCATTCGAGCAGGATGTTTTCACATGTTTTTCAAAAAATGAGAAAAGTTTCTCATTTAAATAT
GAAAATTGAAATTTTTAGAAAGTAAAAAAAATGATTTTAAAAGTTTCTTACCTAGTAAACTATTT
CAAAAATTTGTAAGTCCTTCGGGCCATCAGA
Found at i:1464775 original size:42 final size:40
Alignment explanation
Indices: 1464728--1464806 Score: 104
Period size: 42 Copynumber: 1.9 Consensus size: 40
1464718 GCCCATCAGA
* * *
1464728 AAGCCTTTTGAGCATGATGGGTAAATCCTTCGGGTCATTTAT
1 AAGCCTTTCGAGCAAGAT-GATAAATCCTTCGGG-CATTTAT
*
1464770 AAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCATT
1 AAGCCTTTCGAGCAAGATGATAAATCCTTCGGGCATT
1464807 CCATAGGACC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 4 0.12
41 13 0.39
42 16 0.48
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (40 bp):
AAGCCTTTCGAGCAAGATGATAAATCCTTCGGGCATTTAT
Found at i:1465591 original size:201 final size:202
Alignment explanation
Indices: 1465223--1465643 Score: 544
Period size: 201 Copynumber: 2.1 Consensus size: 202
1465213 AAGTAAATCC
* * * * * * ** * * *
1465223 TTCGGGACATCTATAAGCCTTTCAATCAAGATGATAAGTCTTTCGAGACATCCAA-AAGACCTTC
1 TTCGGGACATCAATAAGTCTTTCGAGCATGTTGATAAGTCCCTCGGGCCAT-CAATAATACCTTC
* * *
1465287 GGTCATGATGTTTTCACATTTTTTTAAAAAAATGAGAAAATTTTCTAATTTAAATATGAAATTTG
65 GGGCAGGATGTTTTCACATTTTTTTAAAAAAATAAGAAAATTTTCTAATTTAAATATGAAATTTG
* * *
1465352 AAATTTTTGAAAAGTAAGAAAATAATTTTCAAAGTTTCTTACCTAGTAAACTATT-TCCAAAATT
130 AAAATTTTGAAAAGTAAGAAAATAATTCTAAAAGTTTCTTACCTAGTAAACTATTAT-CAAAATT
*
1465416 GGTAAGTCA
194 GGGAAGTCA
*
1465425 TTCGGGACATCAGTAAGTCTTTCGAGCATGTTGATAAGTCCCTCGGGCCATCAATAATACCTTCG
1 TTCGGGACATCAATAAGTCTTTCGAGCATGTTGATAAGTCCCTCGGGCCATCAATAATACCTTCG
* *
1465490 GGCAGGATGTTTTCACATTTTTTT-GAAAAATAAGAAAATTTTCTCATTTAAATATGAAAATTT-
66 GGCAGGATGTTTTCACATTTTTTTAAAAAAATAAGAAAATTTTCTAATTTAAATATG-AAATTTG
* * * *
1465553 AAAATTTTGAAAAGTAAGAAAATGATTCTAAAAGTTTCTTACCTAGTATATTATTATTAAAATTG
130 AAAATTTTGAAAAGTAAGAAAATAATTCTAAAAGTTTCTTACCTAGTAAACTATTATCAAAATTG
*
1465618 GGAAGTCC
195 GGAAGTCA
*
1465626 TTCGGGTCATCAATAAGT
1 TTCGGGACATCAATAAGT
1465644 TTTTTCTGCA
Statistics
Matches: 188, Mismatches: 28, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
201 110 0.59
202 78 0.41
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35
Consensus pattern (202 bp):
TTCGGGACATCAATAAGTCTTTCGAGCATGTTGATAAGTCCCTCGGGCCATCAATAATACCTTCG
GGCAGGATGTTTTCACATTTTTTTAAAAAAATAAGAAAATTTTCTAATTTAAATATGAAATTTGA
AAATTTTGAAAAGTAAGAAAATAATTCTAAAAGTTTCTTACCTAGTAAACTATTATCAAAATTGG
GAAGTCA
Found at i:1465929 original size:244 final size:241
Alignment explanation
Indices: 1465425--1466898 Score: 1480
Period size: 244 Copynumber: 6.0 Consensus size: 241
1465415 TGGTAAGTCA
* * * * * * * *
1465425 TTCGGGACATC-AGTAAGTCTTTCGAGCATGTTGATAAGTCCCTCGGGCCATCAATAA-TACCTT
1 TTCGGGTCATCTA-TAAGCCTTTCAAGCAAGATGATAAGTCCTTCGGGTCATCCATAAGT--CTT
* *
1465488 CGGGCAGGATGTTTTCACAT-TTTTTTGAAAAATAAGAAAATTTTCTCATTTAAATATGAAAATT
63 CGGGCAGGATGTTTTCACATATTTTCTGAAAAATAAGAAAA-TTTCTCATTTAAATCTGAAAATT
* * *
1465552 TAAAATTTTGAAAAGTAAGAAAATGATTCTAAAAGTTTCTTACCTAGTATATTATTAT-TAAAAT
127 GAAAATTTTGAAAAGTAAGAAAATGATTCTCAAAGTTTCTTACCTAGTAAATTATT-TCTAAAAT
* * * * ** * *
1465616 TGGGAAGTCCTTCGGGTCATCAATAAGTTTTTTCTGCATGATGAGTAAATTC
191 TGGTAAGTCCTTC-GGCCATCAGTAAGTCTTTTGAGCATGATGTGTAAATCC
* * * *
1465668 TTCGGGTTATATATAAGCCTTTCAAGCAATATGATAAGTCCTTCGGGTCATCCATATGGTCTTCG
1 TTCGGGTCATCTATAAGCCTTTCAAGCAAGATGATAAGTCCTTCGGGTCATCCATA-AGTCTTCG
* *
1465733 GGCAGGATGTTTTCACATATTTTCTGAAAAATAAGAAATATATATCATTTAAATCTGAAAATTGA
65 GGCAGGATGTTTTCACATATTTTCTGAAAAATAAGAAA-ATTTCTCATTTAAATCTGAAAATTGA
* * * * * *
1465798 AATTTTTGAAAAGTAAGAAAATGATTCCCAAAGTTTCGTATCTAGTAAACTATTTCTAAAATTTG
129 AAATTTTGAAAAGTAAGAAAATGATTCTCAAAGTTTCTTACCTAGTAAATTATTTCTAAAATTGG
* *
1465863 TAAGTCATTCGGCCTATCAGTGAGTCTTTTGAGCATGATGTGTAAATCC
194 TAAGTCCTTCGGCC-ATCAGTAAGTCTTTTGAGCATGATGTGTAAATCC
* * * * **
1465912 ATCGGATCATCTATAAGCCTTTTAAGCAAGAGGATAAGTCCTTCGGG-CGATTTATAAGTCCTTC
1 TTCGGGTCATCTATAAGCCTTTCAAGCAAGATGATAAGTCCTTCGGGTC-ATCCATAAGT-CTTC
* * * * ** * * * *
1465976 AGGCAGGATGTTTTCACGTGTTTTTTGAAAAACGAGAAACGTTTCTCCTTTAAATTTGAGAATTG
64 GGGCAGGATGTTTTCACATATTTTCTGAAAAATAAGAAA-ATTTCTCATTTAAATCTGAAAATTG
* * * *
1466041 AAAATTTTGAAAAGTAATAAAACGATTTTCAAAGTTTCTTACCTAGTAAAGTATTT-TCAAAATT
128 AAAATTTTGAAAAGTAAGAAAATGATTCTCAAAGTTTCTTACCTAGTAAATTATTTCT-AAAATT
* * * *
1466105 GGTAAGTCCTTTGGGCCATCAGTAAGTCTTTCGAGAATGATGAGTAAATCC
192 GGTAAGTCC-TTCGGCCATCAGTAAGTCTTTTGAGCATGATGTGTAAATCC
* *
1466156 TTCGGGTCATCTATAAGCCTTT-AGAGCAAGATGATAAGTCCTTCGGGGCATCCATAAGTCCATC
1 TTCGGGTCATCTATAAGCCTTTCA-AGCAAGATGATAAGTCCTTCGGGTCATCCATAAGT-CTTC
* * * * * *
1466220 AGACTGGATGTTTTCATATATTTT-TCGAAAAATAAGAAAGGTTTCTCATTTAAATCTAAAAATT
64 GGGCAGGATGTTTTCACATATTTTCT-GAAAAATAAGAAA-ATTTCTCATTTAAATCTGAAAATT
* *
1466284 GAAAATTTTGAAAAGTAAGAAAACT-ATTTTCAAAGTTTATTACCTAGTAAATTATTATC-AAAA
127 GAAAATTTTGAAAAGTAAGAAAA-TGATTCTCAAAGTTTCTTACCTAGTAAATTATT-TCTAAAA
* * * *
1466347 TTTGTAAGTCCTTCGGGCCATCATTAAGTCTTTTGAGCTTGTTGTGTAAATCC
190 TTGGTAAGTCCTTC-GGCCATCAGTAAGTCTTTTGAGCATGATGTGTAAATCC
* * * * * * *
1466400 TTCGAAGTTATATATAAGCCTTTCAAGCAATATGATAAGGCCTTCGGCTCATCCATAAGGTATTC
1 TTCG-GGTCATCTATAAGCCTTTCAAGCAAGATGATAAGTCCTTCGGGTCATCCATAA-GTCTTC
* * * * * ** * * *
1466465 GGGTAAGATGTTTTCATAAATTTTCCGAAAAA-AAGATAAAAATATCAATTTAAATATGAATATT
64 GGGCAGGATGTTTTCACATATTTTCTGAAAAATAAGA-AAATTTCTC-ATTTAAATCTGAAAATT
* * * *
1466529 GAAATTTTTGAAAAGTAAGAAAATGATTCCCAAAGTTTCGTACCTAGTAAACTATTTCTAAAATT
127 GAAAATTTTGAAAAGTAAGAAAATGATTCTCAAAGTTTCTTACCTAGTAAATTATTTCTAAAATT
* * *
1466594 GGTAAGTCCTTCGACCCATCAGTAAGTCTTTCGAGCTTGATGTGTAAATCC
192 GGTAAGTCCTTCG-GCCATCAGTAAGTCTTTTGAGCATGATGTGTAAATCC
* * * * * *
1466645 TTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCGTAAGACCTCCG
1 TTCGGGTCATCTATAAGCCTTTCAAGCAAGATGATAAGTCCTTCGGGTCATCCATAAGTCTTCGG
* * * * * *
1466710 GTAGGATGTTTTCACAGGTTTTTTC-AAAAAATGAGAAACGTTTCTCATTTAAATCTAAAAATTG
66 GCAGGATGTTTTCACA--TATTTTCTGAAAAATAAGAAA-ATTTCTCATTTAAATCTGAAAATTG
* * * * * *
1466774 AAATTTTTGAAAAGTAAAAAAATGATTTTCAAAGTTTCTTACCTCGTGAATTATTTCAAAAATCT
128 AAAATTTTGAAAAGTAAGAAAATGATTCTCAAAGTTTCTTACCTAGTAAATTATTTCTAAAAT-T
** * * **
1466839 -GTAAGTCCTTTCGGCCATCAAAAAGTCTGTCGAGCATGATGACTAAATCC
192 GGTAAGTCC-TTCGGCCATCAGTAAGTCTTTTGAGCATGATGTGTAAATCC
*
1466889 TTCAGGTCAT
1 TTCGGGTCAT
1466899 TTAAATATGA
Statistics
Matches: 1019, Mismatches: 179, Indels: 65
0.81 0.14 0.05
Matches are distributed among these distances:
243 96 0.09
244 706 0.69
245 214 0.21
246 3 0.00
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.35
Consensus pattern (241 bp):
TTCGGGTCATCTATAAGCCTTTCAAGCAAGATGATAAGTCCTTCGGGTCATCCATAAGTCTTCGG
GCAGGATGTTTTCACATATTTTCTGAAAAATAAGAAAATTTCTCATTTAAATCTGAAAATTGAAA
ATTTTGAAAAGTAAGAAAATGATTCTCAAAGTTTCTTACCTAGTAAATTATTTCTAAAATTGGTA
AGTCCTTCGGCCATCAGTAAGTCTTTTGAGCATGATGTGTAAATCC
Found at i:1466201 original size:41 final size:41
Alignment explanation
Indices: 1466106--1466213 Score: 112
Period size: 42 Copynumber: 2.6 Consensus size: 41
1466096 TTCAAAATTG
* * *
1466106 GTAAGTCCTTTGGGCCATCAGTAAGTCTTTCGAGAATGATGA
1 GTAAGTCCTTCGGGCCATCA-TAAGCCTTTAGAGAATGATGA
* *
1466148 GTAAATCCTTCGGGTCATCTATAAGCCTTTAGAGCAA-GATGA
1 GTAAGTCCTTCGGGCCATC-ATAAGCCTTTAGAG-AATGATGA
*
1466190 -TAAGTCCTTCGGGGCATCCATAAG
1 GTAAGTCCTTCGGGCCAT-CATAAG
1466214 TCCATCAGAC
Statistics
Matches: 56, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
41 20 0.36
42 33 0.59
43 3 0.05
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (41 bp):
GTAAGTCCTTCGGGCCATCATAAGCCTTTAGAGAATGATGA
Found at i:1466889 original size:489 final size:482
Alignment explanation
Indices: 1465457--1466891 Score: 1556
Period size: 489 Copynumber: 2.9 Consensus size: 482
1465447 CGAGCATGTT
* * * * * * * **
1465457 GATAAGTCCCTCGGGCCATCAATAA-TACCTTCGGGCAGGATGTTTTCAC-ATTTTTTTGAAAAA
1 GATAAGGCCTTCGGGCCATCCATAAGT-CATTCAGGCAAGATGTTTTCACAAATTTTCCGAAAAA
* * * * *
1465520 TA-AGAAAATTTTCTCATTTAAATATGAAAATTTAAAATTTTGAAAAGTAAGAAAATGATTCTAA
65 -AGAGAAAAATATCTAATTTAAATATG-AAATTGAAAATTTTGAAAAGTAAGAAAATGATTCTCA
* * * * * *
1465584 AAGTTTCTTACCTAGTATATTATTATTAAAATTGGGAAGTCCTTCGGGTCATCAATAAGTTTTTT
128 AAGTTTCTTACCTAGTAAACTATT-TTAAAATTGGTAAGTCCTTCGGGCCATCAGTAAG-TCTTT
* * * * * *
1465649 C-TGCATGATGAGTAAATTCTTCGGGTTATATATAAGCCTTTCAAGCAATATGATAAGTCCTTCG
191 CGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATAAGTCCTTCG
* * * * * * ** * *
1465713 GGTCATCCATATGGTCTTCGGGCAGGATGTTTTCACATATTTTCTGAAAAATAAGAAATATATAT
256 GGCCATCCATA-AGTCCTCAGGTAGGATGTTTTCACATTTTTTC-GAAAAATAAGAAACGTTTCT
* * ** * *
1465778 CATTTAAATCTGAAAATTGAAATTTTTGAAAAGTAAGAAAATGATTCCCAAAGTTTCGTATCTAG
319 CATTTAAATCTAAAAATTGAAATTTTTGAAAAGTAAAAAAATGATTTTCAAAGTTTCTTACCTAG
* * * *
1465843 TAAACTATTTCTAAAATTTGTAAGTCATTCGGCCTATCAGTGAGTCTTTTGAGCATGATGTGTAA
384 TAAATTATTTC-AAAATTTGTAAGTCCTTCGGCC-ATCAATAAGTCTTTTGAGCATGATGTGTAA
* * * *
1465908 ATCCATCGGATCATCTATAAGCCTTTTAAGCAAGAG
447 ATCCTTCGAATCATATATAAGCCTTTCAAGCAAGAG
* * ** * * *** ** *
1465944 GATAAGTCCTTCGGGCGATTTATAAGTCCTTCAGGCAGGATGTTTTCACGTGTTTTTTGAAAAAC
1 GATAAGGCCTTCGGGCCATCCATAAGTCATTCAGGCAAGATGTTTTCACAAATTTTCCGAAAAAA
** * ** * * * *
1466009 GAGAAACGTTTCTCCTTTAAATTTGAGAATTGAAAATTTTGAAAAGTAATAAAACGATTTTCAAA
66 GAGAAAAATATCTAATTTAAATATGA-AATTGAAAATTTTGAAAAGTAAGAAAATGATTCTCAAA
* *
1466074 GTTTCTTACCTAGTAAAGTATTTTCAAAATTGGTAAGTCCTTTGGGCCATCAGTAAGTCTTTCGA
130 GTTTCTTACCTAGTAAACTATTTT-AAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGA
* * *
1466139 GAATGATGAGTAAATCCTTCGGGTCATCTATAAGCCTTTAGAGCAAGATGATAAGTCCTTCGGGG
194 GCATGATGAGTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGC
* * *
1466204 CATCCATAAGTCCATCAGACT-GGATGTTTTCATATATTTTTCGAAAAATAAGAAAGGTTTCTCA
259 CATCCATAAGTCC-TCAG-GTAGGATGTTTTCACAT-TTTTTCGAAAAATAAGAAACGTTTCTCA
* * *
1466268 TTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAACT-ATTTTCAAAGTTTATTACCTAGT
321 TTTAAATCTAAAAATTGAAATTTTTGAAAAGTAA-AAAAATGATTTTCAAAGTTTCTTACCTAGT
* * *
1466332 AAATTATTATCAAAATTTGTAAGTCCTTCGGGCCATCATTAAGTCTTTTGAGCTTGTTGTGTAAA
385 AAATTATT-TCAAAATTTGTAAGTCCTTC-GGCCATCAATAAGTCTTTTGAGCATGATGTGTAAA
* * *
1466397 TCCTTCGAAGTTATATATAAGCCTTTCAAGCAATAT
448 TCCTTCGAA-TCATATATAAGCCTTTCAAGCAAGAG
* * *
1466433 GATAAGGCCTTC-GGCTCATCCATAAGGT-ATTCGGGTAAGATGTTTTCATAAATTTTCCGAAAA
1 GATAAGGCCTTCGGGC-CATCCATAA-GTCATTCAGGCAAGATGTTTTCACAAATTTTCCG-AAA
* * *
1466496 AAAGATAAAAATATC-AATTTAAATATGAATATTGAAATTTTTGAAAAGTAAGAAAATGATTCCC
63 AAAGAGAAAAATATCTAATTTAAATATGAA-ATTGAAAATTTTGAAAAGTAAGAAAATGATTCTC
* **
1466560 AAAGTTTCGTACCTAGTAAACTATTTCTAAAATTGGTAAGTCCTTCGACCCATCAGTAAGTCTTT
127 AAAGTTTCTTACCTAGTAAACTATTT-TAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTT
* *
1466625 CGAGCTTGATGTGTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATAAGTCCTTCG
191 CGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATAAGTCCTTCG
* * * * *
1466690 GGCCATCCGTAAGACCTCCGGTAGGATGTTTTCACAGGTTTTTTCAAAAAATGAGAAACGTTTCT
256 GGCCATCCATAAGTCCTCAGGTAGGATGTTTTCACA--TTTTTTCGAAAAATAAGAAACGTTTCT
*
1466755 CATTTAAATCTAAAAATTGAAATTTTTGAAAAGTAAAAAAATGATTTTCAAAGTTTCTTACCTCG
319 CATTTAAATCTAAAAATTGAAATTTTTGAAAAGTAAAAAAATGATTTTCAAAGTTTCTTACCTAG
* * * * * **
1466820 TGAATTATTTCAAAAATCTGTAAGTCCTTTCGGCCATCAAAAAGTCTGTCGAGCATGATGACTAA
384 TAAATTATTTC-AAAATTTGTAAGTCC-TTCGGCCATCAATAAGTCTTTTGAGCATGATGTGTAA
1466885 ATCCTTC
447 ATCCTTC
1466892 AGGTCATTTA
Statistics
Matches: 799, Mismatches: 125, Indels: 46
0.82 0.13 0.05
Matches are distributed among these distances:
487 54 0.07
488 347 0.43
489 378 0.47
490 20 0.03
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.35
Consensus pattern (482 bp):
GATAAGGCCTTCGGGCCATCCATAAGTCATTCAGGCAAGATGTTTTCACAAATTTTCCGAAAAAA
GAGAAAAATATCTAATTTAAATATGAAATTGAAAATTTTGAAAAGTAAGAAAATGATTCTCAAAG
TTTCTTACCTAGTAAACTATTTTAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGC
ATGATGAGTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCA
TCCATAAGTCCTCAGGTAGGATGTTTTCACATTTTTTCGAAAAATAAGAAACGTTTCTCATTTAA
ATCTAAAAATTGAAATTTTTGAAAAGTAAAAAAATGATTTTCAAAGTTTCTTACCTAGTAAATTA
TTTCAAAATTTGTAAGTCCTTCGGCCATCAATAAGTCTTTTGAGCATGATGTGTAAATCCTTCGA
ATCATATATAAGCCTTTCAAGCAAGAG
Found at i:1467031 original size:20 final size:20
Alignment explanation
Indices: 1466980--1467031 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
1466970 TCCAAAATTG
*
1466980 GTAAGTCCTTCAGGCCATCA
1 GTAAGTCCTTCGGGCCATCA
1467000 GTAAGTCCTTCGGGCCATCA
1 GTAAGTCCTTCGGGCCATCA
*
1467020 GTAAGTCTTTCG
1 GTAAGTCCTTCG
1467032 AGCATGATGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.21, C:0.27, G:0.23, T:0.29
Consensus pattern (20 bp):
GTAAGTCCTTCGGGCCATCA
Found at i:1467051 original size:42 final size:42
Alignment explanation
Indices: 1466999--1467123 Score: 146
Period size: 42 Copynumber: 3.0 Consensus size: 42
1466989 TCAGGCCATC
1466999 AGTAAGTCCTTCGGGCCAT-CAGTAAGTCTTTCGAGCATGATG
1 AGTAAGTCCTTCGGGCCATACA-TAAGTCTTTCGAGCATGATG
* * * * *
1467041 AGTAAATCCTTCGGGTCATACATAAGCCTTTCGAGGAAGATG
1 AGTAAGTCCTTCGGGCCATACATAAGTCTTTCGAGCATGATG
* * * *
1467083 A-TAAGTTCTTCGGGCCATCCATAAGTATTTCTAGCATGATG
1 AGTAAGTCCTTCGGGCCATACATAAGTCTTTCGAGCATGATG
1467124 TTTTCACATC
Statistics
Matches: 68, Mismatches: 14, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
41 31 0.46
42 35 0.51
43 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (42 bp):
AGTAAGTCCTTCGGGCCATACATAAGTCTTTCGAGCATGATG
Found at i:1467352 original size:41 final size:42
Alignment explanation
Indices: 1467244--1467358 Score: 110
Period size: 42 Copynumber: 2.7 Consensus size: 42
1467234 TTCCAAAATT
* ** * **
1467244 AGTAAGTCCTTCGGGCTAT-CATTAAGTGTTTCGAGCGTGATG
1 AGTAAATCCTTCGGGCTATCCA-TAAGCCTTTCAAGCAAGATG
*
1467286 AGTAAATCCTTCGGG-TCATCTATAAGCCTTTCAAGCAAGATG
1 AGTAAATCCTTCGGGCT-ATCCATAAGCCTTTCAAGCAAGATG
*
1467328 A-TAATTCCTTCGGGCTATCCATAAGACCTTT
1 AGTAAATCCTTCGGGCTATCCATAAG-CCTTT
1467359 GGGCAGAATG
Statistics
Matches: 60, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
41 21 0.35
42 38 0.63
43 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (42 bp):
AGTAAATCCTTCGGGCTATCCATAAGCCTTTCAAGCAAGATG
Found at i:1468108 original size:243 final size:243
Alignment explanation
Indices: 1467417--1471025 Score: 3512
Period size: 244 Copynumber: 15.0 Consensus size: 243
1467407 TTTAAATATG
* ** * * * *
1467417 AAAATTAAGAAAACAATTTTCAAAGTTTCTTACCT-GGAACATTATTTCCAAAATTGGCAAGTCT
1 AAAAGTAAGAAAATGATTTTCAAAGTTTCTTACCTAGTAA-ACTATTTCCAAAATTGGTAAGTCC
* * * * *
1467481 TTCAGGCAATTAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGG-CAATCTATAAGCCTTT
65 TTCGGGCCATCAGTAAGTCTTTTGAGCATGATGAGTAAATCCTTCGGGTC-ATATATAAGCCTTT
* * * * * *
1467545 CGAGGAAGATGATAAGTACTTTGGGCCATCCATAAGACCTTCGGGTATGATGTTTTCACATGTTT
129 CGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACATATTT
* * * * **
1467610 TTCGAAAAATGAGAAAAGTTTCTCATTTAAATATAAAAATTGAAAAATTT
194 TTTGAAAAATGAGAAAAATTTCTCATTTAAATCTGAAAATTGAAATTTTT
* * ** *
1467660 AAAAGTTAAGAAAACGATTTTCAAAGTTTATTACCTAGTAAACTATTTCTGAAATTGTTAAAGTC
1 AAAAG-TAAGAAAATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGT-AAGTC
* * * * * * * *
1467725 TTTCAGGCCATCAGTAAGTCTTTCGAGAATGATGAGTATATCATTCGGGTCATAGATAAACCTTT
64 CTTCGGGCCATCAGTAAGTCTTTTGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTT
* * ** * ** * *
1467790 TGAGTAAGATGATAAGTCCTTCGGGTTATCAATAAGGTCTTCGGGCAGTATGTTTTCATATATTT
129 CGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACATATTT
*** * *
1467855 TCCAAAAAATGAGAAAAATATCTCATTTAAATATGAAAATTGAAATTTTT
194 TTTGAAAAATGAGAAAAATTTCTCATTTAAATCTGAAAATTGAAATTTTT
** ** ** * *
1467905 ATTAGTAAGAAAATGATTCCCATTGTTTCGTACCTAGTAAACTATTTCTAAAATTGGTAAGTCCT
1 AAAAGTAAGAAAATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCT
* * * *
1467970 TCGGCCCATTAGTAAGTCTTTTGAGCATGATGTGTAAATCCTTCGGGTCATATATAAGCATTTCG
66 TCGGGCCATCAGTAAGTCTTTTGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCG
* * * * *
1468035 AGCAAGATGATAAGTCCTTCAGG-CATTCCATAGGACCTTCAGGCAGGATATTTTCACATGTTTT
131 AGCAAGATGATAAGTCCTTCGGGCCA-TCCATAAGACCTTCGGGCAGGATGTTTTCACATATTTT
* *
1468099 TTTAAAAATGAGAAAAGTTTCTCATTTAAAT-TAGAAAATTGAAATTTTAT
195 TTGAAAAATGAGAAAAATTTCTCATTTAAATCT-GAAAATTGAAATTTT-T
* *
1468149 AAAA-TAAGAAAATGATTTTCAAAGTTTGTTACCGAGTAAACTATTT--AAAA-----AA----T
1 AAAAGTAAGAAAATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCT
* * * * * * * *
1468202 T---G------GTAAGTCCTTTGATCATTATGAGTAAAACCTTAC-AGTTATCTATAAGCCATTC
66 TCGGGCCATCAGTAAGTCTTTTGAGCATGATGAGTAAATCCTT-CGGGTCATATATAAGCCTTTC
* * ** ** ** * *
1468257 GAGGAATATGATAAGTTTTTCGGGTAATCCATAAGACCTTCATGCAGGATATTTTCACATGTTTT
130 GAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACATATTTT
** * * * * **
1468322 TCAAAAAATGTGAAAATTTTCTCTTTTAAATCTAAAAATAAAAATTTTT
195 TTGAAAAATGAGAAAAATTTCTCATTTAAATCTGAAAATTGAAATTTTT
*
1468371 GAAAAGTAAGAAAATGATTTTCAAAGTTTCATACCTAGTAAACTATTTCCAAAATTGGTAAGTCC
1 -AAAAGTAAGAAAATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCC
** * * * *
1468436 TTCGGGGAATCAGTAAGTCTTTTGAGCATGATGAGTAAATCCTGCGGGTTATCTATTAGCCTTTC
65 TTCGGGCCATCAGTAAGTCTTTTGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTC
* * *
1468501 GAGCAAGATGATAAGTCTTTCAGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACATGTTTT
130 GAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACATATTTT
* ** *
1468566 TCGAAAAATGAGAAACGTTTCTAATTTAAATCTGAAAATTGAAATTTTT
195 TTGAAAAATGAGAAAAATTTCTCATTTAAATCTGAAAATTGAAATTTTT
* * * * *
1468615 GAAAAGTGAGAAAACGATTTTCAAAGTTTCTTACATAGAAAACTATTTCCAAAATTGGTAATTCC
1 -AAAAGTAAGAAAATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCC
* * * * * * ** *
1468680 TACGGGCTATAAGTAAGTCTTTCGAGCATGATGAGTAAATCTTTCAGGTCACCTATAAGTCTTTC
65 TTCGGGCCATCAGTAAGTCTTTTGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTC
* * * *
1468745 GAGTAAGTTGATAAGTCCCTCGGGCCATCCACAAGACCTTCGGGCAGGATGTTTTCACATATTGT
130 GAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACATATT-T
* * *
1468810 TTTGAAAAATGAGAAAAATTTCTCATTTAAATCTAAAAATTAAAAATTTTG
194 TTTGAAAAATGAGAAAAATTTCTCATTTAAATCTGAAAATT-GAAATTTTT
* * * *
1468861 AAAAGTAAGAAAACGATTCTCAAAGTTTCTTACCTAGTAAACTATTTCCAGAATTGGTATGTCC-
1 AAAAGTAAGAAAATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCT
* * * * * * * * * *
1468925 TGGGGCCCTTTAGTAAGTCTTTCGATCATGATGTGTAAATACTTCGGGTCATCTGTAAGCTTTTC
66 TCGGG-CCATCAGTAAGTCTTTTGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTC
** * * * * * * * *
1468990 GAGCAAGATGATAAGTCCTTCGTTCCATCAATAAGGCCTTCAGGAAGTATATTTTAACATGTTTT
130 GAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACAT-ATTT
** * * **
1469055 TTTGAAAAAATGAGAAATGTTTCTCGA-TGAAATATGAAAATT-ACTTTTTTT
194 TTTG-AAAAATGAGAAAAATTTCTC-ATTTAAATCTGAAAATTGA-AATTTTT
* * * * *
1469106 AAAAAGTAAGAAAACGATTTTAAAAGTTTCTTAGCTAGTAAACTATTTCAAAAATTGATAAGTCC
1 -AAAAGTAAGAAAATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCC
* * * *
1469171 TTCGGGCCATCAGTATGTGTTTCGAGCATGATGAGTAAATCCTTTCAGGTCACTATAT--GCCTT
65 TTCGGGCCATCAGTAAGTCTTTTGAGCATGATGAGTAAATCC-TTCGGGTCA-TATATAAGCCTT
* *
1469234 TCAAGCAAGATGATAAGTCC-TCTGGGCCATCCATAAGACCTTCGGGTAGGATGTTTTCACATAT
128 TCGAGCAAGATGATAAGTCCTTC-GGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACATAT
* * * * *
1469298 TTTTCGAAAAAATGAGAAAAGTTTATCATTTAAATCTAAAAATTGAAAATTTGT
192 TTTTTG-AAAAATGAGAAAAATTTCTCATTTAAATCTGAAAATTG-AAATTTTT
* *
1469352 -AATGTAAGAAAATGATTTTCAAAGTTTATTACCTAGTAAACTATTAT-CAAAATTGGTAAGTCC
1 AAAAGTAAGAAAATGATTTTCAAAGTTTCTTACCTAGTAAACTATT-TCCAAAATTGGTAAGTCC
* * ** * * *
1469415 TTTGGGTCATCAGTAAACCTTTTCAGCATGATGAGTAAATCCTTCGGATTATATATAAGCCTTTC
65 TTCGGGCCATCAGTAAGTCTTTTGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTC
* * * * * * * **
1469480 AAGCAATATGATAAGTCATTTGTGTCATCTAT-AGGTCTTCGGGCAGGATGTTTTCACATATTTT
130 GAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACATATTTT
* * ** *
1469544 CTGAAAAATGAGAGAAATACCTCATTTAAATCTGAAATTTG-AATTTTT
195 TTGAAAAATGAGAAAAATTTCTCATTTAAATCTGAAAATTGAAATTTTT
* ** * * *
1469592 GAAAAGTAAAAAAATGATTCCCAAAGTTTCGTACCTAGTAAACTATTTCTAAAATTGGTAACTCC
1 -AAAAGTAAGAAAATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCC
*** * * * * *
1469657 TTCAACCCAACAGTAAGTCTTTTGAGCATGATGTGTAAATCCTTCGGATCATCTATAAGCCTTTT
65 TTCGGGCCATCAGTAAGTCTTTTGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTC
* * *
1469722 GAGGAAGAGGATAA---------G---TCC-T------TT-GGGCAGGATGTTTTCACATGTTTT
130 GAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACATATTTT
* * * * * *
1469767 TCGAAAAATAAGAAAAGTTTCTCCTTTAAATATGAAAAAATTGAAAATTTTG
195 TTGAAAAATGAGAAAAATTTCTCATTTAAATCTG--AAAATTG-AAATTTTT
*
1469819 AAAAGTAAAAAAATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCT
1 AAAAGTAAGAAAATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCT
* * * ** * * *
1469884 TCGGGCCATCAGTTAGTCATTCGATAATGATGAGTAAATCCTTCGGGTTATATATGAGCCTTTCA
66 TCGGGCCATCAGTAAGTCTTTTGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCG
* * ** * **
1469949 AGCAATATAATAAGTCCTTCAAGTCATCCATAAGGTCTTCGGGCAGGATGTTTTCACATATTTTT
131 AGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACATATTTTT
* * *
1470014 TGAAAAATGAGAAAACTTTCTCATTTAAATCTAAAAATTGAAAATTTTG
196 TGAAAAATGAGAAAAATTTCTCATTTAAATCTGAAAATTG-AAATTTTT
* * * * **
1470063 AAAAGTAA-AAAACGATTTTCAAAGTTTATTACCTAGTAAATTATTAT-CAAAATTTGTAAGTTA
1 AAAAGTAAGAAAATGATTTTCAAAGTTTCTTACCTAGTAAACTATT-TCCAAAATTGGTAAGTCC
* * * *
1470126 TTCGGGCCATCAATAAGTCTTTTGAACATGATGAGTAAATCCTTCGGGTTATATATGAGCCTTTC
65 TTCGGGCCATCAGTAAGTCTTTTGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTC
* * * * * ** *
1470191 AAGCAATATAATAAGTCTTTCGGGTCATCCATAAGGTCTTCGGGAAGGATGTTTTCACATATTTT
130 GAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACATATTTT
** * * * *
1470256 CCGAAAAAAGATAAAAATGTCTCATTTAAATCT-AAATGTTGAAATTTTT
195 TTGAAAAATGAGAAAAATTTCTCATTTAAATCTGAAA-ATTGAAATTTTT
* ** * *
1470305 GAAAAGTACGAAAATGATTCCCAAAGTTTCATACCTAGTAAAC-ATTTCTAAAATTGGTAAGTCC
1 -AAAAGTAAGAAAATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCC
** * * * * * *
1470369 TTCGCCCCATCAGTAAGTCATTCGAGCTTGATGAGTAAATCCTTTGGGTCATCTATAAGTCTTTC
65 TTCGGGCCATCAGTAAGTCTTTTGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTC
* * * * *
1470434 GAGCATGTTGATAAGTCCCTCAGGCCATCCATAAGACCTTCGGGCATGATGTTTTCACATATTTT
130 GAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACATA-TTT
* * *
1470499 TTTG-AAAATAAGAAAAATTTCTCATTTAAATCTGAAAATTTAAAATTTTG
194 TTTGAAAAATGAGAAAAATTTCTCATTTAAATCTGAAAA-TTGAAATTTTT
* *
1470549 AAAAGTAAGAAAATGATTCTCAAAGTTTCTTACCTAGTATACTATTAT-CAAAATTGGTAAGTCC
1 AAAAGTAAGAAAATGATTTTCAAAGTTTCTTACCTAGTAAACTATT-TCCAAAATTGGTAAGTCC
* * ** * * *
1470613 TTCGAGTCATCAGTAAGTCTTTTCTGCATGATGAGTAAATTCTTCGGGTTATATATAAGACTTTC
65 TTCGGGCCATCAGTAAGTCTTTTGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTC
* * * * ** *
1470678 AAGCAATATGATAATTCCTTCGGGTCATCCATAAGGTCTTCGTGCAGGATGTTTTCACATATTTT
130 GAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACATATTTT
* * * *
1470743 CTGAAAAAGGAGAAAAATATCTCAATTAAATCTGAAAATTGAAATTTTT
195 TTGAAAAATGAGAAAAATTTCTCATTTAAATCTGAAAATTGAAATTTTT
** *
1470792 GAAAAGTAAGAAAATGATTCCCAAAGTTTCTTACCTAGTAAACTATTTCTAAAATTGGTAAGTCC
1 -AAAAGTAAGAAAATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCC
* * * * * *
1470857 TTCGGCCCATCAATAAGTCTTTTGAGCATGATGTGTAAATCCATCGGATCATTTATAAGCCTTTC
65 TTCGGGCCATCAGTAAGTCTTTTGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTC
* * * *
1470922 GAGCAAGAGGATAAGTCCTTCGGGCCATCCCTAAGACC-TCAGGTAGGATGTTTTCACATATTTT
130 GAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACATATTTT
* ** *
1470986 TTGAAAAATAAGAAACGTTTCTCATTTACATCT-AAAATTG
195 TTGAAAAATGAGAAAAATTTCTCATTTAAATCTGAAAATTG
1471026 GTAAGTCTTT
Statistics
Matches: 2768, Mismatches: 506, Indels: 185
0.80 0.15 0.05
Matches are distributed among these distances:
222 1 0.00
223 186 0.07
224 44 0.02
225 6 0.00
226 122 0.04
227 6 0.00
229 1 0.00
230 2 0.00
231 2 0.00
232 2 0.00
233 1 0.00
235 3 0.00
236 2 0.00
238 4 0.00
239 1 0.00
240 6 0.00
241 5 0.00
242 171 0.06
243 673 0.24
244 878 0.32
245 401 0.14
246 234 0.08
247 14 0.01
248 3 0.00
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.34
Consensus pattern (243 bp):
AAAAGTAAGAAAATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCT
TCGGGCCATCAGTAAGTCTTTTGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGCCTTTCG
AGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACATATTTTT
TGAAAAATGAGAAAAATTTCTCATTTAAATCTGAAAATTGAAATTTTT
Found at i:1470729 original size:487 final size:486
Alignment explanation
Indices: 1469743--1471025 Score: 1723
Period size: 487 Copynumber: 2.6 Consensus size: 486
1469733 TAAGTCCTTT
* * * * * *
1469743 GGGCAGGATGTTTTCACATGTTTTTCGAAAAATA-AGAAAAGTTTCTCCTTTAAATATGAAAAAA
1 GGGCAGGATGTTTTCACATATTTTCCGAAAAA-AGAGAAAAATATCTCATTTAAATCTG--AAAA
* * ** *
1469807 TTGAAAATTTTGAAAAGTAAAAAAATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAA
63 TTGAAATTTTTGAAAAGTAAGAAAATGATTCCCAAAGTTTCTTACCTAGTAAACTATTTCTAAAA
* * ** *
1469872 TTGGTAAGTCCTTCGGGCCATCAGTTAGTCATTCGATAATGATGAGTAAATCCTTCGGGTTATAT
128 TTGGTAAGTCCTTCGGCCCATCAGTAAGTCATTCGAGCATGATGAGTAAATCCTTCGGGTCATAT
* * * * * **
1469937 ATGAGCCTTTCAAGCAAT-ATAATAAGTCCTTCAAGTCATCCATAAGGTCTTCGGGCAGGATGTT
193 ATAAGCCTTTCGAGC-ATGATGATAAGTCCTTCAGGCCATCCATAAGACCTTCGGGCAGGATGTT
* *
1470001 TTCACATATTTTTTGAAAAATGAGAAAACTTTCTCATTTAAATCTAAAAATTGAAAATTTTGAAA
257 TTCACATATTTTTTGAAAAATAAGAAAAATTTCTCATTTAAATCT-AAAATTGAAAATTTTGAAA
* * * * *
1470066 AGTAAAAAACGATTTTCAAAGTTTATTACCTAGTAAATTATTATCAAAATTTGTAAGTTATTCGG
321 AGTAAAAAACGATTCTCAAAGTTTATTACCTAGTAAACTATTATCAAAATTGGTAAGTCATTCGA
* * *
1470131 GCCATCAATAAGTCTTTTGAACATGATGAGTAAATCCTTCGGGTTATATATGAGCCTTTCAAGCA
386 GCCATCAATAAGTCTTTTCAACATGATGAGTAAATCCTTCGGGTTATATATAAGACTTTCAAGCA
*
1470196 ATATAATAAGTCTTTCGGGTCATCCATAAGGTCTTC
451 ATATAATAAGTCCTTCGGGTCATCCATAAGGTCTTC
* * * *
1470232 GGGAAGGATGTTTTCACATATTTTCCGAAAAAAGATAAAAATGTCTCATTTAAATCT-AAATGTT
1 GGGCAGGATGTTTTCACATATTTTCCGAAAAAAGAGAAAAATATCTCATTTAAATCTGAAA-ATT
* *
1470296 GAAATTTTTGAAAAGTACGAAAATGATTCCCAAAGTTTCATACCTAGTAAAC-ATTTCTAAAATT
65 GAAATTTTTGAAAAGTAAGAAAATGATTCCCAAAGTTTCTTACCTAGTAAACTATTTCTAAAATT
* * * *
1470360 GGTAAGTCCTTCGCCCCATCAGTAAGTCATTCGAGCTTGATGAGTAAATCCTTTGGGTCATCTAT
130 GGTAAGTCCTTCGGCCCATCAGTAAGTCATTCGAGCATGATGAGTAAATCCTTCGGGTCATATAT
* * * *
1470425 AAGTCTTTCGAGCATGTTGATAAGTCCCTCAGGCCATCCATAAGACCTTCGGGCATGATGTTTTC
195 AAGCCTTTCGAGCATGATGATAAGTCCTTCAGGCCATCCATAAGACCTTCGGGCAGGATGTTTTC
*
1470490 ACATATTTTTTTG-AAAATAAGAAAAATTTCTCATTTAAATCTGAAAATTTAAAATTTTGAAAAG
260 ACATA-TTTTTTGAAAAATAAGAAAAATTTCTCATTTAAATCT-AAAATTGAAAATTTTGAAAAG
* * * *
1470554 TAAGAAAATGATTCTCAAAGTTTCTTACCTAGTATACTATTATCAAAATTGGTAAGTCCTTCGAG
323 TAA-AAAACGATTCTCAAAGTTTATTACCTAGTAAACTATTATCAAAATTGGTAAGTCATTCGAG
* * ** *
1470619 TCATCAGTAAGTCTTTTCTGCATGATGAGTAAATTCTTCGGGTTATATATAAGACTTTCAAGCAA
387 CCATCAATAAGTCTTTTCAACATGATGAGTAAATCCTTCGGGTTATATATAAGACTTTCAAGCAA
* *
1470684 TATGATAATTCCTTCGGGTCATCCATAAGGTCTTC
452 TATAATAAGTCCTTCGGGTCATCCATAAGGTCTTC
* * * *
1470719 GTGCAGGATGTTTTCACATATTTTCTGAAAAAGGAGAAAAATATCTCAATTAAATCTGAAAATTG
1 GGGCAGGATGTTTTCACATATTTTCCGAAAAAAGAGAAAAATATCTCATTTAAATCTGAAAATTG
1470784 AAATTTTTGAAAAGTAAGAAAATGATTCCCAAAGTTTCTTACCTAGTAAACTATTTCTAAAATTG
66 AAATTTTTGAAAAGTAAGAAAATGATTCCCAAAGTTTCTTACCTAGTAAACTATTTCTAAAATTG
* * * * * * *
1470849 GTAAGTCCTTCGGCCCATCAATAAGTCTTTTGAGCATGATGTGTAAATCCATCGGATCATTTATA
131 GTAAGTCCTTCGGCCCATCAGTAAGTCATTCGAGCATGATGAGTAAATCCTTCGGGTCATATATA
* * * * * *
1470914 AGCCTTTCGAGCAAGAGGATAAGTCCTTCGGGCCATCCCTAAGACC-TCAGGTAGGATGTTTTCA
196 AGCCTTTCGAGCATGATGATAAGTCCTTCAGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCA
** *
1470978 CATATTTTTTGAAAAATAAGAAACGTTTCTCATTTACATCTAAAATTG
261 CATATTTTTTGAAAAATAAGAAAAATTTCTCATTTAAATCTAAAATTG
1471026 GTAAGTCTTT
Statistics
Matches: 692, Mismatches: 94, Indels: 19
0.86 0.12 0.02
Matches are distributed among these distances:
485 2 0.00
486 189 0.27
487 343 0.50
488 111 0.16
489 47 0.07
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (486 bp):
GGGCAGGATGTTTTCACATATTTTCCGAAAAAAGAGAAAAATATCTCATTTAAATCTGAAAATTG
AAATTTTTGAAAAGTAAGAAAATGATTCCCAAAGTTTCTTACCTAGTAAACTATTTCTAAAATTG
GTAAGTCCTTCGGCCCATCAGTAAGTCATTCGAGCATGATGAGTAAATCCTTCGGGTCATATATA
AGCCTTTCGAGCATGATGATAAGTCCTTCAGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCA
CATATTTTTTGAAAAATAAGAAAAATTTCTCATTTAAATCTAAAATTGAAAATTTTGAAAAGTAA
AAAACGATTCTCAAAGTTTATTACCTAGTAAACTATTATCAAAATTGGTAAGTCATTCGAGCCAT
CAATAAGTCTTTTCAACATGATGAGTAAATCCTTCGGGTTATATATAAGACTTTCAAGCAATATA
ATAAGTCCTTCGGGTCATCCATAAGGTCTTC
Found at i:1471136 original size:177 final size:178
Alignment explanation
Indices: 1470839--1471204 Score: 520
Period size: 177 Copynumber: 2.1 Consensus size: 178
1470829 GTAAACTATT
* **
1470839 TCTAAAATTGGTAAGTCCTTCGGCCCATCAATAAGTCTTTTGAGCATGATGTGTAAATCCATCGG
1 TCTAAAATTGGTAAGTCCTTCGGCCCATCAATAAGTCTTTCGAGCATGATGAATAAATCCATCGG
* ** * *
1470904 ATCATTTATAAGCCTTTCGAGCAAGAGGATAAGTCCTTCGGGCCATCCCTAAGACC-TCAGGTAG
66 ATCATTTATAAGCCTTTCGAGAAAGAGGATAAGTCCTTCAAGCCATCCATAAGACCTTCAGGCAG
* * *
1470968 GATGTTTTCACATATTTTTTGAAAAATAAGAAACGTTTCTCATTTACA
131 GATGTTTTCACATATTTTTAGAAAAATAAGAAACGTTTCTCAATTAAA
* *
1471016 TCTAAAATTGGTAAGTCTTTCAGG-CCATCAATAAGTCTTTCGAGCATGATGAATAAATCCTTCG
1 TCTAAAATTGGTAAGTCCTTC-GGCCCATCAATAAGTCTTTCGAGCATGATGAATAAATCCATCG
* * * *
1471080 GGTCATTTATAAGCCTTTCTAGAAAGATGATAAGTCCTTCAAGCCATGCATAAGACCTTCAGGCA
65 GATCATTTATAAGCCTTTCGAGAAAGAGGATAAGTCCTTCAAGCCATCCATAAGACCTTCAGGCA
* * *
1471145 GGATGTTTTCACATATTTTTAGAAAAATGAGAAATGTTTTTCAATTAAA
130 GGATGTTTTCACATATTTTTAGAAAAATAAGAAACGTTTCTCAATTAAA
1471194 TCTGAAAATTG
1 TCT-AAAATTG
1471205 AAAATTTTGA
Statistics
Matches: 166, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
177 105 0.63
178 54 0.33
179 7 0.04
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (178 bp):
TCTAAAATTGGTAAGTCCTTCGGCCCATCAATAAGTCTTTCGAGCATGATGAATAAATCCATCGG
ATCATTTATAAGCCTTTCGAGAAAGAGGATAAGTCCTTCAAGCCATCCATAAGACCTTCAGGCAG
GATGTTTTCACATATTTTTAGAAAAATAAGAAACGTTTCTCAATTAAA
Found at i:1473463 original size:59 final size:59
Alignment explanation
Indices: 1473364--1473500 Score: 170
Period size: 59 Copynumber: 2.3 Consensus size: 59
1473354 CAGCAGGCTG
** *
1473364 CATATTCGGGAATACACTAAAGGATACCTAGTGTATATGGTGGGA-ACGACCTTATGTGT
1 CATATTCGGGAATACACTAAAGGATACCTAGTACAGATGGT-GGACACGACCTTATGTGT
* ** *
1473423 CATATTCGGGACTGTACTTAAGGATACCTAGTACAGATGGTGGACACGACCTTATGTGT
1 CATATTCGGGAATACACTAAAGGATACCTAGTACAGATGGTGGACACGACCTTATGTGT
*
1473482 CATACTCGGG-ATAGCACTA
1 CATATTCGGGAATA-CACTA
1473501 CGGTGCTTAT
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
58 4 0.06
59 60 0.94
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (59 bp):
CATATTCGGGAATACACTAAAGGATACCTAGTACAGATGGTGGACACGACCTTATGTGT
Found at i:1473591 original size:20 final size:20
Alignment explanation
Indices: 1473554--1473592 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
1473544 TATATTGGGC
* *
1473554 TATTGTCTATTGTTTATGGA
1 TATTGTCTATGGTATATGGA
*
1473574 TATTTTCTATGGTATATGG
1 TATTGTCTATGGTATATGG
1473593 CTATGGAATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.05, G:0.21, T:0.54
Consensus pattern (20 bp):
TATTGTCTATGGTATATGGA
Found at i:1475759 original size:37 final size:36
Alignment explanation
Indices: 1475699--1475768 Score: 97
Period size: 37 Copynumber: 1.9 Consensus size: 36
1475689 TTTCAAGCAA
*
1475699 GATGATAAGTTCTTCGGGTCATCAATAAGTTCTTCCG
1 GATGATAAGTCCTTCGGGTCATCAATAA-TTCTTCCG
*
1475736 GATGATAAGTCCTT-TGGTCCATCAATAATTCTT
1 GATGATAAGTCCTTCGGGT-CATCAATAATTCTT
1475769 TCGATCATGA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
36 8 0.27
37 22 0.73
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (36 bp):
GATGATAAGTCCTTCGGGTCATCAATAATTCTTCCG
Found at i:1476523 original size:42 final size:40
Alignment explanation
Indices: 1476477--1476573 Score: 106
Period size: 42 Copynumber: 2.4 Consensus size: 40
1476467 AAGTCCTTTG
* *
1476477 GGCCATCAGTAAGACTTTTGAGCATGATGTGTAAATCCTTCA
1 GGCCATCAGTAAGACTTTTGAGCAAGA-G-ATAAATCCTTCA
* * *
1476519 GGCCATCTA-TAAGCCTTTTGAGCAAGAGATAAGTCCTTCT
1 GGCCATC-AGTAAGACTTTTGAGCAAGAGATAAATCCTTCA
*
1476559 GGCCATCCGTAAGAC
1 GGCCATCAGTAAGAC
1476574 CTTCGAACAA
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
40 21 0.46
41 1 0.02
42 23 0.50
43 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (40 bp):
GGCCATCAGTAAGACTTTTGAGCAAGAGATAAATCCTTCA
Found at i:1477007 original size:42 final size:41
Alignment explanation
Indices: 1476960--1477048 Score: 108
Period size: 42 Copynumber: 2.1 Consensus size: 41
1476950 TTGGTAAGTC
* * *
1476960 CTTCGGGCCATC-AGTAAGTCTTTCGAGCATGATGAGTAAATG
1 CTTCGGGCCATCTA-TAAGCCTTTAGAGCAAGATGA-TAAATG
* *
1477002 CTTCGGGTCATCTATAAGCCTTTAGAGCAAGATGATAAATT
1 CTTCGGGCCATCTATAAGCCTTTAGAGCAAGATGATAAATG
1477043 CTTCGG
1 CTTCGG
1477049 CCAATCCATA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
41 11 0.27
42 29 0.71
43 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (41 bp):
CTTCGGGCCATCTATAAGCCTTTAGAGCAAGATGATAAATG
Found at i:1477066 original size:245 final size:244
Alignment explanation
Indices: 1474403--1481102 Score: 6676
Period size: 244 Copynumber: 27.6 Consensus size: 244
1474393 GACCTCTTGT
* * * * *
1474403 AGGATGTTTTCACAGGTTTTTTCAAAAAATAAGAAAAGTTTCTCATTTACATCT-AAAATTTAAA
1 AGGATGTTTTCACATG-TTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAATTGAAA
* * * * * *
1474467 TTTTTGAAAAGTAAGAAAATGATTTTCAAAGTTTCTTACCTCGTAAATTATTTTCAAAATTGCTA
65 ATTTTGAAAAGTAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTA
* * * * * *
1474532 TGTCCTTCGGGCCATCAATAAGTCTGTCGAGCATGATGACTAAATGCTTCGAGTCATCTATAAGC
130 AGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGC
* * *
1474597 TTTTCA-AGCAAAATGATAAG-CCTTTCGGGCCATCCATAAGACCTTCGGGA
195 CTTT-AGAGCAAGATGATAAGTCC-TTCGGGCCATCCATAAGACCTTCGGGC
*
1474647 AGGATGTTTTCACTTGTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAAAA-TGAAA
1 AGGATGTTTTCACATGTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCT-AAAAATTGAAA
* * * *
1474711 TTTTTGAAAAGTAAGAAAACGATTTTCAAAGATTCTTACCTAGTAAACTATTTCCTAAATTGGTG
65 ATTTTGAAAAGTAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTA
* * * * * * *
1474776 TGTCTTTCGTGCCATCAATAAGTCTTTCGAGCAT-ATGAGTAAATCCATCGTGTCATATATAAGC
130 AGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGC
* * * * * * **
1474840 CTTTCGAGGAAGATGATAAGTTCTTCGGGCTATCCATAAGTCTTTTAGGC
195 CTTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGC
* * * * *
1474890 ATGATGTTTTGACATCTTTTTTCAAAAAATGAGAAACGTTTCTCATTTAAATCTAAAAATT-AAA
1 AGGATGTTTTCACAT-GTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAATTGAAA
* * * * * * * * *
1474954 ATTTTTTAAAATTAATAAAACAATTTTCAAAGTTTATTTCCTACTAAACTATTTCCGAAATTGAT
65 A-TTTTGAAAAGTAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGT
* * ** * * * * * *
1475019 AAGTCTTTCAGGCCATCAGTAAGAGTTTCGAGCGTGATGAGTATATCATTCGGATCATATATAAT
129 AAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAG
* * **
1475084 CCTTTCA-AGAAAGTTGATAAGTCCTTCGGGCCATCCATAAGTTCTTCGGGC
194 CCTTT-AGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGC
** * * * *
1475135 AATATGTTTTCACATATTTTCCGAAAAATGAG--AA-TTTTTTATTTAAATCTAAAAATTGAAAA
1 AGGATGTTTTCACATGTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAATTGAAAA
* * *
1475197 TTTTGAAACGTAAGAAAATGATTCTT-AAAGTTTTTTACCTAGTAAACTATTTCCAAAATTGGTA
66 TTTTGAAAAGTAAGAAAACGATT-TTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTA
* *
1475261 AGTCCTTTGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAAT-GTTCGGGTCATCTATAAGC
130 AGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGC
* * * * * * **
1475325 CTTTCGAGGAAGATGATAAGTCCTTCAGGCAATCTATAAGACTTTCGGAT
195 CTTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGC
* * *
1475375 AGGATGTTTTCACAGGTTTTTCGAAAAATGAGAAAAGTTTCTCATTGAAGTCTAAAAATTGAAAA
1 AGGATGTTTTCACATGTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAATTGAAAA
* * ***
1475440 TTTTGAAAAGTAAGAAAACAATTTTCAAAGTTTATTACCTAGTAAACTATTTTTGAAATTGGTAA
66 TTTTGAAAAGTAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAA
* * * * * * *
1475505 GT-CTTTGAGGCCATCAGTAAGTCTTTCGGGCATTATGCGTATATCATTCGGGGTCATATATAAG
131 GTCCTTCG-GGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTC-GGGTCATCTATAAG
* * * ** *
1475569 CCTTTTA-AGAAAGTTGATAAGTCCTTCGGGCCATCAATAAGTTCTTCAGGC
194 CC-TTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGC
* * * * ****
1475620 AAGATGTTTTCACATATTTTT-GAAAAATGAGAAAA--ATATCATTTAAATCCTTCGGGTCATCT
1 AGGATGTTTTCACATGTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAAT-C-T--AAAAAT-T
* * * ** * * *
1475682 -ATAAGCA-TTTCAAGCAAG-ATGATAA-G-TTCTTC---GGGTC--ATC-AAT-AAGT-TCTTC
61 GA-AA--ATTTTGAA--AAGTAAGAAAACGATT-TTCAAAGTTTCTTACCTAGTAAACTAT-TTC
** * * * * * * *
1475734 C-GGA-TGATAAGTCCTTTGGTCCATCAATAATTCTTTCGATCATGATGAGTAAATCCTTTCGGA
119 CAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCC-TTCGGG
* * * *
1475797 TCA-CAATAAGCCTTTCGAGCAAGATGATAAG-CTCTGT-GGGCCATCCATAAGACCTTCAGGT
183 TCATCTATAAGCCTTTAGAGCAAGATGATAAGTC-CT-TCGGGCCATCCATAAGACCTTCGGGC
* * *
1475858 AGGATGTTTTCACA--TTTTTCTAAACAATGTGAAAAGTTTCTCATTTAAATCTGAAAATTGAAA
1 AGGATGTTTTCACATGTTTTTCGAAA-AATGAGAAAAGTTTCTCATTTAAATCTAAAAATTGAAA
* * * * * * * * *
1475921 TTTTTAAAAATTATG-AAACGATTTTCAATGTTT-TTACCTGGTAAATTATTTCCAAACTTGGCA
65 ATTTTGAAAAGTAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTA
* * * * * ** * *
1475984 AGTCCTTCGGGTCATCAATAAGTCTTCCGAGCATGATAAGTAAGTATTTCAGGTCAACTATAAGC
130 AGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGC
* ** * * * ** *
1476049 TTTTTA-AGGTAGATCATAAGTCTTTTGTTCCATCCATAAGACCTTCGGAC
195 -CTTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGC
* *
1476099 AGGATG-TTTCAAATGTTTTAT-GAAAAATGAGAAAAGTTTCTCATTGAAATCTAAAAATTGAAA
1 AGGATGTTTTCACATGTTTT-TCGAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAATTGAAA
** * * * * *
1476162 ATTTTGAAAAGTAAGAAAATAATTTTCAGATTTTATTATCTAGTAAACTATTTCCGAAATTGGTA
65 ATTTTGAAAAGTAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTA
* * * ** *
1476227 AGTCTTTCAGGCCATCAGTAAGTCTTTC-AGGCATGATGAGTATATCAGTCGGGTCATATATAAG
130 AGTCCTTCGGGCCATCAGTAAGTCTTTCGA-GCATGATGAGTAAATCCTTCGGGTCATCTATAAG
* * * * * **
1476291 TCTTTCA-AGAAAGTTGATATGTCCTTCGGGCCATCAATAAGTTCTTCGGGC
194 CCTTT-AGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGC
** * * * * * *
1476342 AATATGTTTTCACAT-ATTTTCGAAAAATGAG--AATTTTTTTATTCAAATCTAAAAATTGAAAT
1 AGGATGTTTTCACATGTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAATTGAAAA
* *
1476404 TTTTGAAAAGTAAGAAAACAATTCTT-AAAGTTTTTTACCTAGTAAACTATTTCCAAAATTGGTA
66 TTTTGAAAAGTAAGAAAACGATT-TTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTA
* * * * * *
1476468 AGTCCTTTGGGCCATCAGTAAGACTTTTGAGCATGATGTGTAAATCCTTCAGGCCATCTATAAGC
130 AGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGC
* * * **
1476533 CTTTTGAGCAAGA-GATAAGTCCTTCTGGCCATCCGTAAGACCTTCGAAC
195 CTTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGC
* * * * * * *
1476582 AAGATGTTTTCACAT-ATTTTCGAAAAAATGAGAAAAATGTATCATGTAAATCTTAAAATTG-AA
1 AGGATGTTTTCACATGTTTTTCG-AAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAATTGAAA
* * *
1476645 ATATTTGAAAAGTAAGAAAATGTTTTTCATAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGT
65 AT-TTTGAAAAGTAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGT
* * * *
1476710 AAGTCCTTCGGGCCATCAATAAGTCTTTCGAGCATGATAAGTAAATCCTTTGGGTCATATATAAG
129 AAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAG
* * * * ** * *
1476775 CCTTTCGAGGAAGATAATAAGACCTTCAAGCCATCCGTAAGACCTTCAGGC
194 CCTTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGC
* * * * * *
1476826 AGGATGTTTTCACATGTTTTTAGAAAAATGAGAAATGTTTTTTTATTTAAATATGAAAATTGAAA
1 AGGATGTTTTCACATGTTTTTCGAAAAATGAGAAAAG-TTTCTCATTTAAATCTAAAAATTGAAA
*
1476891 ATTTTGAAAAGCAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTA
65 ATTTTGAAAAGTAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTA
*
1476956 AGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATGCTTCGGGTCATCTATAAGC
130 AGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGC
* * * *
1477021 CTTTAGAGCAAGATGATAAATTCTTC-GGCCAATCCATATGACCTTCGTGC
195 CTTTAGAGCAAGATGATAAGTCCTTCGGGCC-ATCCATAAGACCTTCGGGC
* * * * *
1477071 AGGATGTTTTCACATATTTTTTGAAAAATGAGAAAAGTTTCTCATTTAAATTTGAAAATTGAAAT
1 AGGATGTTTTCACATGTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAATTGAAAA
* * *
1477136 TTTTGAAAAGTATGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCAAAAATTGGTAT
66 TTTTGAAAAGTAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAA
* * * *
1477201 GTCCTTCGGGTCATCAGTAAGCCTTTTC-AGCATGATGAGTAAATCCTTCGGGTTATATATATAA
131 GTCCTTCGGGCCATCAGTAAGTC-TTTCGAGCATGATGAGTAAATCCTTCGGG-T-CATCTATAA
* * * ***
1477265 GCCTTTCA-AGCAATATGATAAGTCCTTCGTGTCATCCATAAGGTTTTCGGGC
193 GCCTTT-AGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGC
* * * * **
1477317 ATGATGTTTTCATAT-ATTTTCTGAAAAATGAGAAAAATACCTCATTTAAATCTAAAAATTGAAA
1 AGGATGTTTTCACATGTTTTTC-GAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAATTGAAA
* * ** *
1477381 TTTTTGAAAAGTAAGAAAATGATTCCCAAAGTTT-TGTACCTAGTAAACTATTTCTAAAATTGGT
65 ATTTTGAAAAGTAAGAAAACGATTTTCAAAGTTTCT-TACCTAGTAAACTATTTCCAAAATTGGT
* * * * *
1477445 AAGTCCTTCGGCCCATCAGTAAATCTTTCGAGCATGTTGAGTAAATCATTCGGATCATCTATAAG
129 AAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAG
* * * * * * * * *
1477510 CCTTTCGAGCAAGAGGATATGCCCTTCGGGCGATTCACAAGTCCTTAGGGC
194 CCTTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGC
* * * * * *
1477561 -GTGATCTTTTCACATGCTTTTCGAAAAAGGAGAAAATTTTCTCCTTTAAATATGAAAAATTGAA
1 AG-GATGTTTTCACATGTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCT-AAAAATTGAA
* * *
1477625 AATTTTAAAAAGGAA-AAATATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGG
64 AATTTTGAAAAGTAAGAAA-ACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGG
* * * * * * * *
1477689 TAAGCCCTTCAGGCCATCAGTAAGTCTTTCGAGAATGATGATTAAATCCGTCGGGTTATATATGA
128 TAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAA
* * * * * * * * **
1477754 GCCTTTCA-AGCAATATAATTAGACATTCGAGTCATCTATAAGGTCTTCGGGC
193 GCCTTT-AGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGC
* ** * *
1477806 AGGATGTTTTCACATATTTTTTAAAAAATGAGAAAAGTTTCTCATTTAAATATAAAAATTGTAAA
1 AGGATGTTTTCACATGTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAATTGAAAA
* * * * * *
1477871 TTTTGGAAAGTAAAAAAATGATTTTCAAAGTTTATTACCTAGTAAATTATTAT-CAAAATTTGTA
66 TTTTGAAAAGTAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATT-TCCAAAATTGGTA
* * * * * * * *
1477935 AGTCATTCGGGCAATCATTAAGTGTTTTGAGCATGATGAGTAAATCCTTCGGGTTATATATGAGC
130 AGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGC
* * * ** **
1478000 CTTTCA-AGCAATATAATAAGTCTTTCGGATCATCCATAAGGTCTTCGGGC
195 CTTT-AGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGC
* * * * * * * * *
1478050 AGGATTTTTTCACAT-ATTTTCGAAAAAAGATAAAA-TATCTCATTTAAATTTGAATATTGAAAT
1 AGGATGTTTTCACATGTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAATTGAAAA
* ** * * * * *
1478113 TTTTGAAAAGTAAGAAAATGATTCCCAAATTTTCGTACCTAGTAAACAATTTCTAAAATCGGTAA
66 TTTTGAAAAGTAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAA
* * * * * * * * *
1478178 GTCGTTTGGCCCATCAGTACGTCTTTCAAGCTTGATGTGTAAATCCTTCGGGTCATCCATAAGTC
131 GTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGCC
* * * ** *
1478243 TTTTGAGCAAGATGATACGTTCTTCGGGTGATCCATAAGACCTTTGGGC
196 TTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGC
* * *
1478292 AGGATGTTTTCACATGTTTTTTCGAATAATGTGAAAAGTTTATCATTTAAATCTAAAAATTG-AA
1 AGGATGTTTTCACATG-TTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAATTGAAA
* * * * *
1478356 ATTTAGAAAAATTAAGAAAACAAATTTCAAAGTTTCTTACGTAGTAAACTATTTCCAAAATTGGT
65 ATTTTG-AAAAGTAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGT
* * * * *
1478421 AATTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATAAGTAAATCATCCAGGTCATCTATAAG
129 AAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAG
* ** **
1478486 CTTTTCA-AGCAAGATGATAAGTCCTTCGTTCCATCCATAATTCCTTCGGGC
194 CCTTT-AGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGC
* * * *
1478537 AGGATGTTTTCAAATGTTTTAT-GAAAAATGAGAAAATTTTCTCATTTAAATATGAAAATTGAAA
1 AGGATGTTTTCACATGTTTT-TCGAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAATTGAAA
* * * *
1478601 ATTTTGAAAATTAAGAAAATGATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTTGTA
65 ATTTTGAAAAGTAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTA
* * * *
1478666 AGTCCTTTGGGCCATTAGTAAGTCTTTCAAGCATGATGAGTAAATCCTTCGGGTCATTTATAAGC
130 AGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGC
* * * * * *
1478731 CTTTCGAGCAAGATAATAAATCATTCGGGCCATCCATAAGACC-TCTGGT
195 CTTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGC
* * *
1478780 AGGATGTTTTCACAGGTTTTTTTTCGTAAAATGAGAAAAGTTTCTCTTTTAAATCTAAAAATTGA
1 AGGATGTTTTCACA---TGTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAATTGA
* * * * * * *
1478845 AATTTTTGAAAAGTTAGAAAATGATTTTCAAAGTGTCTTTCCTTGTAAAGTATTTCCAAAATTGG
63 AAATTTTGAAAAGTAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGG
* * * * * * * * * *
1478910 TAAATCATTCAGGTCATCAATAACTCTGTCGAGCATGATGACTAAATCCTTCGAGTCATTTATAA
128 TAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAA
* * *
1478975 GCTTTTCGAGCAAGATGATAAGT-CTTCTGGGCCATCCATAAGACCTTCGGAC
193 GCCTTTAGAGCAAGATGATAAGTCCTTC-GGGCCATCCATAAGACCTTCGGGC
* * * *
1479027 ATGATGCTTTCACATGTTTTTCGAAAAATGAGAAAAGTTTCTCGTTTAAATCTGAAAATTG-AAA
1 AGGATGTTTTCACATGTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAATTGAAAA
* * *
1479091 TTTTTAAAAGTAAGAAAACGATTTTGAAAGTTTCTTACCTAGTAAACAATTTCCAAAATTGGTAA
66 TTTTGAAAAGTAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAA
* **
1479156 GTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATATATAAGAA
131 GTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGCC
* * * * *
1479221 TTTAGAGGAAGATGATAAGTTCTTCAGGCCATCCATAAGTCTTTTC-GGC
196 TTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGAC-CTTCGGGC
* * *
1479270 ATGATGTTTTCACATCGTTTTTCGAAAAATAAGAAATG-TT-TCATTTAAATCTAAAAATTGAAA
1 AGGATGTTTTCACAT-GTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAATTGAAA
* * * * *
1479333 TTTTTGAAAATTAAGAAAACAAATTTCAAAGTTTCTTACCTAGTAAACTATTTCAAAAATTGGTA
65 ATTTTGAAAAGTAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTA
* ** * * * *
1479398 AGTCCTTCAGGATATTAGTAAGTCTTTCAAGCATGGTGAGCAAATCCTTCGGGTCATCTATAAGC
130 AGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGC
* * * * **
1479463 ATTTCA-AGCAAGATAATAAGTCCTTCTGGCTATCCATATTACCTTCGGGC
195 CTTT-AGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGC
** *
1479513 AAAATGTTTTCACATGTTTTTTGAAAAAT-ATGAAAAGTTTCTCATTTAAATCT-AAAATTGAAA
1 AGGATGTTTTCACATGTTTTTCGAAAAATGA-GAAAAGTTTCTCATTTAAATCTAAAAATTGAAA
* * * * * * * *
1479576 TTTTTAAAAATTATGAAAACGATTTTCAATGTTTCTTACCTGGTAAATTATTTCCAAAATTGGCA
65 ATTTTGAAAAGTAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTA
* * * * *
1479641 AGTCCTTCGGCCCATTAGTAAGTCTTTCGAGCATGATAAGTAAATCCTCCAGGTCATCTATAAGC
130 AGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGC
* * * **
1479706 TTTTCGAGGAAGATGATAAGTCCTTCTTGCCATCCATAAGACCTTCGGG-
195 CTTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGC
* *
1479755 ATGGATGTTTTCAAATGTTTTAT-GAAAAATGAGAAAAGTTTCTCATTGAAATCTAAAAATTGAA
1 A-GGATGTTTTCACATGTTTT-TCGAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAATTGAA
** * *
1479819 AATTTTGAAAAGTAAGAAAATAATTTTCAAAGTTTATTACCTAGTAAACTATTTCCGAAATTGGT
64 AATTTTGAAAAGTAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGT
* * * * * * *
1479884 AAATCTTTCAGGCCATCAGTAAGTCTTTCGTGCATGATGAGTATATCATTCAGGTCA-CATATAA
129 AAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATC-TATAA
* * * * **
1479948 GCTTTTCA-AGAAAGTTGATAAGTCCTTCGGGCCATCAATAAGTTCTTCGGGC
193 GCCTTT-AGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGC
* * * * * *
1480000 AAGATATTTTCACATATTTTCCGAAAAAAATGAGAATTTA-TTT-T-ATTCAAATCTAAAAATT-
1 AGGATGTTTTCACATGTTTTTCG--AAAAATGAGAA--AAGTTTCTCATTTAAATCTAAAAATTG
*
1480061 AAAATTTTTGAAAAGTAAGAAAACGATTCTT-AAAGTTTTTTACCTAGTAAACTATTTCCAAAAT
62 AAAA-TTTTGAAAAGTAAGAAAACGATT-TTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAAT
* * * * *
1480125 TGGTAAGCCCTTTGGGCCATCAGTAAGTCTTTCGAGAATGATGTGTAAATCCTTAGGGTCATCTA
125 TGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTA
* * * *
1480190 TAAGCCTTTTGAGCAAGA-GATAAGTCCTTCTGGCCATTCGTAAGACCTTCGGGC
190 TAAGCCTTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGC
* * * * * * * *
1480244 AAGATGTTTTTACAT-ATTTTCAAAAAATGAGAAAAATGTATC-TTTTAA---AAAAATTG-AAA
1 AGGATGTTTTCACATGTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAATTGAAAA
** *
1480303 TATTTGAAAAGTAAGAAAACTTTTTTCAAAGTTTCTTACCTAGTAAACTATTTCGAAAATTGGTA
66 T-TTTGAAAAGTAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTA
** * * * * *
1480368 AGTCCTAAGGGTCATCAATAAGTCGTTCGAGCATAATGAGTAAATCCTTCGGGTCATATATAAGC
130 AGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGC
* * * ** *
1480433 TTTTCGAGCAAGATGATAAATCCTT-----CAAGC--AAGACCTTCAGGC
195 CTTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGC
* * * * *
1480476 ATGATGTTTTCACATGTTTTTAGAAAAATGAGAAATGTTTTTCATTTAAATCTGAAAATTGAAAA
1 AGGATGTTTTCACATGTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAATTGAAAA
* * * * *
1480541 TTTTGGAAAGCAAGAAAACGATTATCAAAGTTTCTTACCTAGTAAACTATTTCCAAATTTCGTAA
66 TTTTGAAAAGTAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAA
** * *
1480606 GTCCTTTTGGCCATCAGTAAGTCTTTCGAGCATGATTAGTAAATTCTTCGGGTCATCTATAAGCC
131 GTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGCC
* * * *
1480671 TTTAGAGCAAGATGATAAATTCTTC-GGCAAATCCATAAGACCTTTC-TGC
196 TTTAGAGCAAGATGATAAGTCCTTCGGGC-CATCCATAAGACC-TTCGGGC
* * *
1480720 AAGATGTTTTCACATGTTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATTTGAAAATT-AAA
1 AGGATGTTTTCACATG-TTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAATTGAAA
* * *
1480784 ATTTTTAAAAAGTAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCAAAAATTTGT
65 A-TTTTGAAAAGTAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGT
* * * ** *
1480849 ATGTCCTTTGGGCCATCAATAAGTCTTTCGAGCATGATGAGTAAATCCTTTCGGAACA-CAATAA
129 AAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCC-TTCGGGTCATCTATAA
* * ** *
1480913 GCCTTTCGAGCAAGATGATAAGTCCTTTGGGAAATCCATAAGACCTTTGGGC
193 GCCTTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGC
* * * * *
1480965 AAGATGTTTTCACATATTTTTTGAAAAACTGAGAAAAGTTTCTCATTTAAATCTAAAATTTGAAC
1 AGGATGTTTTCACATGTTTTTCGAAAAA-TGAGAAAAGTTTCTCATTTAAATCTAAAAATTGAAA
* *
1481030 ATTTTTAAAAGTAAGAAAACGATTTTCAAAGTTTATTACCTAGTAAACTATTAT-CAAAATTGGT
65 ATTTTGAAAAGTAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATT-TCCAAAATTGGT
1481094 AAGTCCTTC
129 AAGTCCTTC
1481103 AGGTTATATA
Statistics
Matches: 5313, Mismatches: 972, Indels: 341
0.80 0.15 0.05
Matches are distributed among these distances:
232 29 0.01
233 27 0.01
234 15 0.00
235 3 0.00
236 11 0.00
237 151 0.03
238 200 0.04
239 61 0.01
240 167 0.03
241 411 0.08
242 279 0.05
243 1062 0.20
244 1252 0.24
245 1183 0.22
246 418 0.08
247 26 0.00
248 9 0.00
249 6 0.00
250 3 0.00
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (244 bp):
AGGATGTTTTCACATGTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAATTGAAAA
TTTTGAAAAGTAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAA
GTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGCC
TTTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGC
Found at i:1480423 original size:42 final size:41
Alignment explanation
Indices: 1480376--1480458 Score: 100
Period size: 42 Copynumber: 2.0 Consensus size: 41
1480366 TAAGTCCTAA
1480376 GGGTCATCA-ATAAG-TCGTTCGAGCATA-ATGAGTAAATCCTTC
1 GGGTCAT-ATATAAGCT-GTTCGAGCA-AGATGA-TAAATCCTTC
*
1480418 GGGTCATATATAAGCTTTTCGAGCAAGATGATAAATCCTTC
1 GGGTCATATATAAGCTGTTCGAGCAAGATGATAAATCCTTC
1480459 AAGCAAGACC
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
41 12 0.32
42 24 0.65
43 1 0.03
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.30
Consensus pattern (41 bp):
GGGTCATATATAAGCTGTTCGAGCAAGATGATAAATCCTTC
Found at i:1480911 original size:42 final size:41
Alignment explanation
Indices: 1480865--1480970 Score: 117
Period size: 41 Copynumber: 2.6 Consensus size: 41
1480855 TTTGGGCCAT
* *
1480865 CAATAAGTCTTTCGAGCATGATGAGTAAATCCTTTCGGAACA
1 CAATAAGCCTTTCGAGCAAGATGA-TAAATCCTTTCGGAACA
* *
1480907 CAATAAGCCTTTCGAGCAAGATGATAAGTCCTTTGGGAA-A
1 CAATAAGCCTTTCGAGCAAGATGATAAATCCTTTCGGAACA
* *
1480947 TCCATAAGACCTTT-GGGCAAGATG
1 -CAATAAG-CCTTTCGAGCAAGATG
1480971 TTTTCACATA
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
40 1 0.02
41 28 0.50
42 27 0.48
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (41 bp):
CAATAAGCCTTTCGAGCAAGATGATAAATCCTTTCGGAACA
Found at i:1480954 original size:41 final size:42
Alignment explanation
Indices: 1480851--1480970 Score: 129
Period size: 42 Copynumber: 2.9 Consensus size: 42
1480841 AAATTTGTAT
** * *
1480851 GTCCTTTGGGCCATCAATAAGTCTTTCGAGCATGATGAGTAA
1 GTCCTTTGGGAAATCAATAAGCCTTTCGAGCAAGATGAGTAA
* *
1480893 ATCCTTTCGGAACA-CAATAAGCCTTTCGAGCAAGATGA-TAA
1 GTCCTTTGGGAA-ATCAATAAGCCTTTCGAGCAAGATGAGTAA
* *
1480934 GTCCTTTGGGAAATCCATAAGACCTTT-GGGCAAGATG
1 GTCCTTTGGGAAATCAATAAG-CCTTTCGAGCAAGATG
1480971 TTTTCACATA
Statistics
Matches: 65, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
40 1 0.02
41 28 0.43
42 35 0.54
43 1 0.02
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (42 bp):
GTCCTTTGGGAAATCAATAAGCCTTTCGAGCAAGATGAGTAA
Found at i:1481274 original size:202 final size:203
Alignment explanation
Indices: 1480909--1481304 Score: 532
Period size: 202 Copynumber: 2.0 Consensus size: 203
1480899 TCGGAACACA
* * **
1480909 ATAAGCCTTTCGAGCAAGATGATAAGTCCTTTGGGAAATCCATAAGACCTTTGGGCAAGATGTTT
1 ATAAGCCTTTCAAGCAAGATGATAAGTCCTTCGGGAAATCCATAAGACCTTTGGGCAAGATAATT
* * * **
1480974 TCACATATTTTTTGAAAAACTGAGAAAAGTTTCTCATTTAAATCTAAAATTTGAACATTTTTAAA
66 TCACATATTTTTTCAAAAAATGAGAAAAATACCTCATTTAAATCTAAAATTTGAACATTTTTAAA
** *
1481039 AGTAAGAAAACGATTTTCAAAGTTTATTACCTAGTAAACTATTATC-AAAATTGGTAAGTCCTTC
131 AGTAAGAAAACGATTCCCAAAGTTTAGTACCTAGTAAACTATT-TCTAAAATTGGTAAGTCCTTC
1481103 AGGTTATAT
195 AGGTTATAT
* * ** ** *
1481112 ATAAGCCTTTCAAGCAATATGATAAGTCCTTCGTGTCATCCATAAG-GTTTTCGGGCAGGATAAT
1 ATAAGCCTTTCAAGCAAGATGATAAGTCCTTCGGGAAATCCATAAGACCTTT-GGGCAAGATAAT
1481176 TTCACATA-TTTTTCAAAAAATGAGAAAAATACCTCATTTAAATCTGAAAA-TTGAA-ATTTTTG
65 TTCACATATTTTTTCAAAAAATGAGAAAAATACCTCATTTAAATCT-AAAATTTGAACATTTTT-
* *
1481238 AAAAGTAAGAAAATGATTCCCAAAGTTTCGTACCTAGTAAACTATTTCTAAAATTGGTAAGTCCT
128 AAAAGTAAGAAAACGATTCCCAAAGTTTAGTACCTAGTAAACTATTTCTAAAATTGGTAAGTCCT
1481303 TC
193 TC
1481305 GGTCCATCAG
Statistics
Matches: 168, Mismatches: 21, Indels: 9
0.85 0.11 0.05
Matches are distributed among these distances:
201 8 0.05
202 99 0.59
203 61 0.36
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.34
Consensus pattern (203 bp):
ATAAGCCTTTCAAGCAAGATGATAAGTCCTTCGGGAAATCCATAAGACCTTTGGGCAAGATAATT
TCACATATTTTTTCAAAAAATGAGAAAAATACCTCATTTAAATCTAAAATTTGAACATTTTTAAA
AGTAAGAAAACGATTCCCAAAGTTTAGTACCTAGTAAACTATTTCTAAAATTGGTAAGTCCTTCA
GGTTATAT
Found at i:1481807 original size:244 final size:241
Alignment explanation
Indices: 1481092--1482037 Score: 1013
Period size: 244 Copynumber: 3.9 Consensus size: 241
1481082 ATCAAAATTG
* * * *
1481092 GTAAGTCCTTCAGGTTATATATAAGCCTTTCAAGCAATATGATAAGTCCTTCGTGTCATCCATAA
1 GTAAATCCTTCGGGTTATATATAAGCCTTTCAAGCAATATAATAAGTCCTTCGGGTCATCCATAA
* * ** * *
1481157 GGTTTTCGGGCAGGATAATTTCACATATTTTTCAAAAAATGAGAAAAATACCTCATTTAAATCTG
66 GGTCTTCGAGCAGGATGTTTTCACATATTTTT-AAAAAATGAGAAAAATATCTCATTTAAATCTA
* * ** **
1481222 AAAATTGAAATTTTTGAAAAGTAAGAAAATGATTCCCAAAGTTTCGTACCTAGTAAACTATTTCT
130 AAAATTGAAAATTTTGAAAAGTAAAAAAATGATTTTCAAAGTTTCGTACCTAGTAATTTATTTC-
* * *
1481287 AAAATTGGTAAGTCCTTCGGTCCATCAGTAAGTCCTTTGAGCATGATGT
194 AAAATTGGTAAGTCCTTCGGGCCATCAGTAAGT-CTTTGAGAATGATGA
* * * * * ** * * *
1481336 GTAAATCCTTCGGATCATCTATAAGCCTTTCGAGCAAGAGGATAAGTCCTTCAGGTGATTCATAA
1 GTAAATCCTTCGGGTTATATATAAGCCTTTCAAGCAATATAATAAGTCCTTCGGGTCATCCATAA
* * * * * * * * * *
1481401 -GTCCTTCGGGCAAGATGTTTCCACATGTTTTTTGAAATATGAGAAAAGTTTCTCCTTTAAATAT
66 GGT-CTTCGAGCAGGATGTTTTCACAT-ATTTTTAAAAAATGAGAAAAATATCTCATTTAAATCT
* * *
1481465 GAAAAATTGAAAATTTTAAAAAGTAAAAAAATAATTTTCATAGTTTCGTACCTAGTAAAATTT-T
129 -AAAAATTGAAAATTTTGAAAAGTAAAAAAATGATTTTCAAAGTTTCGTACCTAGT--AATTTAT
*
1481529 TCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGAATGATGA
191 TTCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTT-GAGAATGATGA
* * * *
1481581 GTAAATCCTTTGGGTTATATATGAGCCTTTCAAGCAATATAATATGTCCTTCGGGTCATCCATAT
1 GTAAATCCTTCGGGTTATATATAAGCCTTTCAAGCAATATAATAAGTCCTTCGGGTCATCCATAA
* * *
1481646 GGTCTTCGAGCAGGATGTTTTCACATATTCTTTTAAAAATGAGAAAAGTTTCTCATTTAAATCTA
66 GGTCTTCGAGCAGGATGTTTTCACATATT-TTTAAAAAATGAGAAAAATATCTCATTTAAATCTA
* **
1481711 AAAATTGAAAATTTTGAAAAGTAAAAAAATGATTTTTAAAGTTTATTACCTAGTAATTTATTATC
130 AAAATTGAAAATTTTGAAAAGTAAAAAAATGATTTTCAAAGTTTCGTACCTAGTAATTTATT-TC
* * *
1481776 AAAATTTGTAAGTCATTTGGGCCATCAGTAAGTCTTTTGA-ACATGATGA
194 AAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTC-TTTGAGA-ATGATGA
* * *
1481825 GTAAAT-CTTCGGGTTATATATGAGCCTTTCAAGCAATATAATAAGGCCTTC-GGTCATCTATAA
1 GTAAATCCTTCGGGTTATATATAAGCCTTTCAAGCAATATAATAAGTCCTTCGGGTCATCCATAA
* * ** * * * *
1481888 GGTCCTCGAGGC-GGATTTTTTTGCATATTTTCCAAAAAAAGATAAAAACATCTCATTTAAATCT
66 GGTCTTCGA-GCAGGATGTTTTCACATATTTT-TAAAAAATGAGAAAAATATCTCATTTAAATCT
* * * * * ** * * *
1481952 GAATATTGAAATTTTTGAAAAGTAAGAAAATTATTCCCAAAGTATCGTACCTAGTAAATAATTTC
129 AAAAATTGAAAATTTTGAAAAGTAAAAAAATGATTTTCAAAGTTTCGTACCTAGTAATTTATTTC
1482017 TAAAATTGGTAAGTCCTTCGG
194 -AAAATTGGTAAGTCCTTCGG
1482038 CCAAGCAAGA
Statistics
Matches: 584, Mismatches: 103, Indels: 32
0.81 0.14 0.04
Matches are distributed among these distances:
241 4 0.01
242 129 0.22
243 49 0.08
244 197 0.34
245 197 0.34
246 5 0.01
247 3 0.01
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.35
Consensus pattern (241 bp):
GTAAATCCTTCGGGTTATATATAAGCCTTTCAAGCAATATAATAAGTCCTTCGGGTCATCCATAA
GGTCTTCGAGCAGGATGTTTTCACATATTTTTAAAAAATGAGAAAAATATCTCATTTAAATCTAA
AAATTGAAAATTTTGAAAAGTAAAAAAATGATTTTCAAAGTTTCGTACCTAGTAATTTATTTCAA
AATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTGAGAATGATGA
Found at i:1482510 original size:244 final size:244
Alignment explanation
Indices: 1482073--1483020 Score: 1196
Period size: 244 Copynumber: 4.0 Consensus size: 244
1482063 AGTTCGGGAG
* * * * *
1482073 ATCCATAAGACCATCGGGCAGGATGTTTTCACATGTTTTTTCAAAAAATGTGAAAACTTTCTCAT
1 ATCCATAAGACCTTCGGGCAGGATGTTTTCAAATGTTTTATCGAAAAATGAGAAAACTTTCTCAT
* *
1482138 TTAAATCTGAAAATT-AAAATTTAGAAAAAGTAAGAAAATGAATTTT-AAAGTTTCTTACATAGT
66 TTAAATCTGAAAATTGAAAATTTTG-AAAAGTAAGAAAATG-ATTTTCAAAGTTTCTTACCTAGT
* * * *
1482201 AAACTATTTCCAAAATTGGTAATTCCTTCGGGCCATCACTAAGTCTTTTGAGCATGATAAGTAAA
129 AAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAA
* * * *
1482266 TCCTCCAGGTCATTTATAAGCTTTTCAAGCAAGATGATAAGTCATTCGTGCC
194 TCCTTCAGGTCATCTATAAGCCTTTCGAGCAAGATGATAAGTCATTCG-GCC
*
1482318 ATCCATAAGACCTTCGGGTAGGATGTTTTCAAATGTTTTAT-GAAAAATGAG-AAACATTTCTCA
1 ATCCATAAGACCTTCGGGCAGGATGTTTTCAAATGTTTTATCGAAAAATGAGAAAAC-TTTCTCA
* *
1482381 TTTAAATATGAAAATTGAAAATTTTGAAAATTAAGAAAATGATTTTCAAAGTTTCTTACCTAGTA
65 TTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAATGATTTTCAAAGTTTCTTACCTAGTA
* *
1482446 AACTATTTCCAAAATTGGTAAGTCCTTCAGGCCTTCAGTAA-TACTTTCGAGCATGATGAGTAAA
130 AACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGT-CTTTCGAGCATGATGAGTAAA
*
1482510 TCCTTCAGGTCATCTATAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCC
194 TCCTTCAGGTCATCTATAAGCCTTTCGAGCAAGATGATAAGTCATTC-GGCC
* * ** *
1482562 ATCCATAAGACC-TCTGGTAGGATGTTTTCACAGGGTTTT-TCGAAAAATGAGAAAAGTTTCTCA
1 ATCCATAAGACCTTCGGGCAGGATGTTTTCA-AATGTTTTATCGAAAAATGAGAAAACTTTCTCA
* *
1482625 TTTAAATCTGAAAAATGAAATTTTTGAAAAGTAAGAAAATGATTTTCAAAGTTTCTTACCTAGTA
65 TTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAATGATTTTCAAAGTTTCTTACCTAGTA
* * *
1482690 AACTATTTCCAAAATTAGTAAGAT-CTTTGGGCCATCAATAAGTCTTTCGAGCATGATGAGTAAA
130 AACTATTTCCAAAATTGGTAAG-TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAA
* *
1482754 TCCTTCGGGTCATATATAAGCCTTT----C--GA-GA-AAG--A--C-G--
194 TCCTTCAGGTCATCTATAAGCCTTTCGAGCAAGATGATAAGTCATTCGGCC
* * * * * * ** *
1482790 ----ATAAGTCCTTCAGGCAGGATGTTTTTACATATTTT-TAGAAAAATGAGAAATGTTTTTCAT
1 ATCCATAAGACCTTCGGGCAGGATGTTTTCAAATGTTTTATCGAAAAATGAGAAAACTTTCTCAT
*
1482850 TTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAATGTTTTTCAAAGTTTCTTACCTAGTAA
66 TTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAATGATTTTCAAAGTTTCTTACCTAGTAA
* * *
1482915 ACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATTAGTAAGTCTTTCGATCATGATGAGTAAATG
131 ACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATC
**
1482980 CTTTGGGTCATCTATAAGCCTTTCGAGCAAGATGATAAGTC
196 CTTCAGGTCATCTATAAGCCTTTCGAGCAAGATGATAAGTC
1483021 CTTCAGGCAG
Statistics
Matches: 622, Mismatches: 59, Indels: 55
0.85 0.08 0.07
Matches are distributed among these distances:
223 1 0.00
224 173 0.28
225 15 0.02
228 1 0.00
230 3 0.00
231 2 0.00
232 4 0.01
236 3 0.00
237 2 0.00
238 2 0.00
240 1 0.00
243 28 0.05
244 336 0.54
245 51 0.08
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (244 bp):
ATCCATAAGACCTTCGGGCAGGATGTTTTCAAATGTTTTATCGAAAAATGAGAAAACTTTCTCAT
TTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAATGATTTTCAAAGTTTCTTACCTAGTAA
ACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATC
CTTCAGGTCATCTATAAGCCTTTCGAGCAAGATGATAAGTCATTCGGCC
Found at i:1482515 original size:42 final size:42
Alignment explanation
Indices: 1482463--1482572 Score: 125
Period size: 42 Copynumber: 2.6 Consensus size: 42
1482453 TCCAAAATTG
* * *
1482463 GTAAGTCCTTCAGGCCTTC-AGTAATACTTTCGAGCATGATGA
1 GTAAGTCCTTCAGGCCATCTA-TAAGACTTTCGAGCAAGATGA
* * *
1482505 GTAAATCCTTCAGGTCATCTATAAGCCTTTCGAGCAAGATGA
1 GTAAGTCCTTCAGGCCATCTATAAGACTTTCGAGCAAGATGA
* *
1482547 -TAAGTCCTTCGGGCCATCCATAAGAC
1 GTAAGTCCTTCAGGCCATCTATAAGAC
1482573 CTCTGGTAGG
Statistics
Matches: 56, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
41 21 0.38
42 34 0.61
43 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (42 bp):
GTAAGTCCTTCAGGCCATCTATAAGACTTTCGAGCAAGATGA
Found at i:1483672 original size:244 final size:244
Alignment explanation
Indices: 1483109--1485622 Score: 3016
Period size: 244 Copynumber: 10.3 Consensus size: 244
1483099 TTTCTTACCT
* * * * * * * * *
1483109 AGTTCTTTGGGCCATCAATAAGTCTTTAGAGAATGATGAGTAATTCCTTCGGATCTTCTATATGT
1 AGTTCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGC
* * * * * *
1483174 CTTTCGAGCAAGATGATAAGTCATTCAGGCCATCGATAAGACCTTTGGGCAGGATATTTTCATAT
66 CTTTCGAGCAAGATGATAAGTCTTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACAT
* *
1483239 ATTTTTTG-AAAATGAGAAAATTTTCTCATTTAAATCTGAAAATTGAAATTTTTGAAAAGTAAG-
131 GTTTTTTGAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAAATTGAAATTTTTGAAAAGTAAGA
** *
1483302 AAACGATTTTCAAAGTTTCTTATGTAGTAAACTATTTCCAAAATTTGTA
196 AAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTA
* * * * * * * * *
1483351 AGTCCTCCGAGCCATCAGTAAGTCTTTCGACCATGATGAGGAAATCTTTTGGCTCACCTATAAGC
1 AGTTCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGC
* * * * * *
1483416 TTTTCAAGCAAGATGATAAGTCTTTCGAGCCATCCATAAGATCTTTGGGCATGATGTTTTCACAT
66 CTTTCGAGCAAGATGATAAGTCTTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACAT
* * * * *
1483481 ATTTTTTGAAAAATGAGAAAAATTTCTCATTTAAATCTAAAAATTGAAATTTTCGAAGAGTAAGA
131 GTTTTTTGAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAAATTGAAATTTTTGAAAAGTAAGA
* * * * *
1483546 AAACGATTCTGAAAGTTTCTTACCTAGTAAATTATTTCGAAAATTAGTA
196 AAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTA
* * * * * * * * *
1483595 AGTTATTCCGTCCATCAATAAGTCTTTCGAGCATTATGTGTAAATCCTTCGGGCCAACCATAAGC
1 AGTTCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGC
* * *
1483660 CTTTCGAGCAAGATGATAAGTTTTTCGGGCCATACATAAGACCTTCGTGCTA-GATGTTTTCACA
66 CTTTCGAGCAAGATGATAAGTCTTTCGGGCCATCCATAAGACCTTCGGGC-AGGATGTTTTCACA
*
1483724 TGTTTTTTGAAAAATGA-AAAAGTTTCTCATTTAAATCTGAAAATTGAAATTTTTGAAAATTAAG
130 TGTTTTTTGAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAAATTGAAATTTTTGAAAAGTAAG
* * *
1483788 AAAA-GATTTTCAGATTTTCTTTCCTAGT--A-TATTTCCAAAAATTGGTA
195 AAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCC-AAAATTGGTA
* * * *
1483835 AGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTTGGGCCATCTATAAGT
1 AGTTCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGC
* * * ** * * *
1483900 TTTTCGAGCAAGATGATAAGTTCTTT-AGGCCATCCTTAATTCCTTCGGACATGATATTTTCACA
66 CTTTCGAGCAAGATGATAAG-TCTTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACA
* * * * * * *
1483964 TATTTTTTGAAAAATCAGAAAAATATCTTATTTAAATATTAAAATTGAAATTTTTGAAAAGTAAG
130 TGTTTTTTGAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAAATTGAAATTTTTGAAAAGTAAG
* * * * *
1484029 AAAATGAATTTCAAAGGTTCTTACCTAGTAAACTATTTCCAATATTTGTA
195 AAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTA
* * * * *
1484079 AG-TCTTTCGGGCCATCTGTAAGTATTTCAAGCATGATGTGTAAATCCTCCGGGTCATCTATAAG
1 AGTTC-TTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAG
* * * * *
1484143 CATATCGAGAAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGATGTTTTCACA
65 CCTTTCGAGCAAGATGATAAGTCTTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACA
* * * ** *
1484208 TCTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAATTGAAAAATTTGAAAAGTATG
130 TGTTTTTTGAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAAATTGAAATTTTTGAAAAGTAAG
*
1484273 AAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCTAAAATTGGTA
195 AAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTA
* * * * * *
1484323 AGTCCTTTGGGCCAACAGTAAATCTTTCGAGCATAATTAGTAAATCCTTCGGGTCATCTATAAGC
1 AGTTCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGC
* * *
1484388 CTTTCGAGCAAGATGATAAGTGGTTT-GGGCCATCCATAAGACCTTCGGGCATGATGTTTTCAAA
66 CTTTCGAGCAAGATGATAAGT-CTTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACA
*
1484452 TGTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAAATTGAAATTTTTGAAAAGTAAG
130 TGTTTTTTGAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAAATTGAAATTTTTGAAAAGTAAG
** * *
1484517 AAAATAATTTTCAGAGTTTCTTACCTAGTAAAATATTTCCAAAAATTGGTA
195 AAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCC-AAAATTGGTA
* * * *
1484568 AGTTCTTCGGGCCATCAATAAGTCTTTCGAGCATGATGAGTAAATCCTTTGGGTCATTTATAAGT
1 AGTTCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGC
* * *
1484633 CTTTCAAACAAGATGATAAGTTCTTT-GGGCCATCCATAAGTCCTTCGGGCAGGATGTTTTCACA
66 CTTTCGAGCAAGATGATAAG-TCTTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACA
* * * *
1484697 TATTTTTTGAAAAATGAGAAAAGTTTCTCATTAAAATATTAAAATTGAAATTTTTGAAAAGTAAG
130 TGTTTTTTGAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAAATTGAAATTTTTGAAAAGTAAG
* * * *
1484762 AAAATGAATTTCAAAGTTTCCTAACTAGTAAACTATTTCCAAAATTGGTA
195 AAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTA
* * * * * * * *
1484812 AG-TCTTTTGGGCCATCAGTATGTGTTTCAAGCATGATGTGTGAATCCTTCAGGTCATCTATAAA
1 AGTTC-TTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAG
* * * * *
1484876 CCTTTCGAGAAAGATGATGAGTCCTTCGGGCCATCCATAAGACCTT-AGGCATGATGTTTTCACA
65 CCTTTCGAGCAAGATGATAAGTCTTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACA
** * *
1484940 TGTTTTTCAAAAAATAAGAAAAGTTTCTCATTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAG
130 TGTTTTTTGAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAAATTGAAATTTTTGAAAAGTAAG
* *
1485005 AAAATGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATCGGTA
195 AAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTA
* * * * *
1485055 AGTCCTTCAGGCCATCAATAAATCTTTCGAGCATGATGAGTAAATCCTTCGGGCCATCTATAAGC
1 AGTTCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGC
* * * * * *
1485120 CTTTGGAGCAAGATGATAAGTCATTCGGGCCATCCATAAGATCTGCGAGCAGGATATTTTCACAT
66 CTTTCGAGCAAGATGATAAGTCTTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACAT
* * *
1485185 GTTTTTTGATAAATGAGAAATATTTTCTCATTTAAATCTGAAAAATTAAAATTTCTT-AAAAGTA
131 GTTTTTTGAAAAATGAGAAA-AGTTTCTCATTTAAATCTG-AAAATTGAAATTT-TTGAAAAGTA
*
1485249 AGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACAATTTCCAAAATTGGTA
193 AGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTA
* * * * *
1485301 AGTCCTTCGGGCCATTAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTTGTGTCATATATAAGC
1 AGTTCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGC
* * * *
1485366 CTTTCGAGCAAGATGATAACTCATTCGGGCCATCCTTAAGACCTTCGGGCAGGATGTTTTCATAT
66 CTTTCGAGCAAGATGATAAGTCTTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACAT
* * * *
1485431 GTTTTTCGAAAAATGAGAAAACTTT-TCATTTAAATTTGAAAATTAAAATTTTTGAAAAGTAAGA
131 GTTTTTTGAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAAATTGAAATTTTTGAAAAGTAAGA
* * * *
1485495 AAACGATTTCCATAGTTT-TGTACCTATTAAACTACTTCCAAAATTGGTA
196 AAACGATTTTCAAAGTTTCT-TACCTAGTAAACTATTTCCAAAATTGGTA
* * ** * * * * * * *
1485544 AGTCCTTCTGGTGATCTGGTGA-TCTTTCGAGCAAGATGA-TAATTCTTTCGGGCCATCAATAAG
1 AGTTCTTCGGGCCATC-AGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAG
*
1485607 ACC-TTCGGGCAAGATG
65 -CCTTTCGAGCAAGATG
1485623 CGTTCATGGG
Statistics
Matches: 1933, Mismatches: 311, Indels: 56
0.84 0.14 0.02
Matches are distributed among these distances:
239 7 0.00
240 126 0.07
241 49 0.03
242 181 0.09
243 411 0.21
244 709 0.37
245 248 0.13
246 200 0.10
247 2 0.00
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (244 bp):
AGTTCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGC
CTTTCGAGCAAGATGATAAGTCTTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACAT
GTTTTTTGAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAAATTGAAATTTTTGAAAAGTAAGA
AAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTA
Found at i:1483899 original size:42 final size:42
Alignment explanation
Indices: 1483832--1483933 Score: 127
Period size: 42 Copynumber: 2.5 Consensus size: 42
1483822 CCAAAAATTG
* *
1483832 GTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGA
1 GTAAGTCCTTTGGGCCATCAGTAAGTCTTTCGAGCAAGATGA
* *
1483874 GTAAATCCTTTGGGCCATCTA-TAAGTTTTTCGAGCAAGATGA
1 GTAAGTCCTTTGGGCCATC-AGTAAGTCTTTCGAGCAAGATGA
* *
1483916 -TAAGTTCTTTAGGCCATC
1 GTAAGTCCTTTGGGCCATC
1483934 CTTAATTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
41 15 0.29
42 36 0.69
43 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (42 bp):
GTAAGTCCTTTGGGCCATCAGTAAGTCTTTCGAGCAAGATGA
Found at i:1484672 original size:41 final size:42
Alignment explanation
Indices: 1484565--1484674 Score: 123
Period size: 42 Copynumber: 2.6 Consensus size: 42
1484555 CCAAAAATTG
* * * *
1484565 GTAAGTTCTTCGGGCCATCAATAAGTCTTTCGAGCATGATGA
1 GTAAGTTCTTTGGGCCATCAATAAGTCTTTCAAACAAGATGA
* * * **
1484607 GTAAATCCTTTGGGTCATTTATAAGTCTTTCAAACAAGATGA
1 GTAAGTTCTTTGGGCCATCAATAAGTCTTTCAAACAAGATGA
*
1484649 -TAAGTTCTTTGGGCCATCCATAAGTC
1 GTAAGTTCTTTGGGCCATCAATAAGTC
1484675 CTTCGGGCAG
Statistics
Matches: 54, Mismatches: 14, Indels: 1
0.78 0.20 0.01
Matches are distributed among these distances:
41 21 0.39
42 33 0.61
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (42 bp):
GTAAGTTCTTTGGGCCATCAATAAGTCTTTCAAACAAGATGA
Found at i:1484797 original size:489 final size:488
Alignment explanation
Indices: 1483109--1485551 Score: 3109
Period size: 489 Copynumber: 5.0 Consensus size: 488
1483099 TTTCTTACCT
* * * * * * * *
1483109 AGTTCTTTGGGCCATCAATAAGTCTTTAGAGAATGATGAGTAATTCCTTCGGATCTTCTATATGT
1 AGTTCTTCGGGCCATCAATAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGC
* * * * *
1483174 CTTTCGAGCAAGATGATAAG-TCATTCAGGCCATCGATAAGACCTTTGGGCAGGATATTTTCATA
66 CTTTCGAGCAAGATGATAAGTTC-TTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACA
* *
1483238 TATTTTTTG-AAAATGAGAAAATTTTCTCATTTAAATCTGAAAATTGAAATTTTTGAAAAGTAAG
130 TATTTTTTGAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAATTGAAATTTTTGAAAAGTAAG
** * * *
1483302 -AAACGATTTTCAAAGTTTCTTATGTAGTAAACTATTTCCAAAATTTGTAAGTCCTCCGAGCCAT
195 AAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCAT
* * * * * * *
1483366 CAGTAAGTCTTTCGACCATGATGAGGAAATCTTTTGGCTCACCTATAAGCTTTTCAAGCAAGATG
260 CAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTTGGGTCATCTATAAGCCTTTCGAGCAAGATG
* * * * *
1483431 ATAAGT-CTTTCGAGCCATCCATAAGATCTTTGGGCATGATGTTTTCACATATTTTTTGAAAAAT
325 ATAAGTCCTTT-GGGCCATCCATAAGACCTTCGGGCATGATGTTTTCACATGTTTTTCGAAAAAT
* * * * * *
1483495 GAGAAAAATTTCTCATTTAAATCTAAAAATTGAAATTTTCGAAGAGTAAGAAAACGATTCTGAAA
389 GAGAAAAATTTCTCATTTAAATCTGAAAATTGAAATTTTTGAAAAGTAAGAAAATGATTTTCAAA
* * *
1483560 GTTTCTTACCTAGTAAATTATTTCGAAAATTAGTA
454 GTTTCTTACCTAGTAAACTATTTCCAAAATTGGTA
* * * * * * * *
1483595 AGTTATTCCGTCCATCAATAAGTCTTTCGAGCATTATGTGTAAATCCTTCGGGCCAACCATAAGC
1 AGTTCTTCGGGCCATCAATAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGC
* * *
1483660 CTTTCGAGCAAGATGATAAGTTTTTCGGGCCATACATAAGACCTTCGTGCTA-GATGTTTTCACA
66 CTTTCGAGCAAGATGATAAGTTCTTCGGGCCATCCATAAGACCTTCGGGC-AGGATGTTTTCACA
* * *
1483724 TGTTTTTTGAAAAATGA-AAAAGTTTCTCATTTAAATCTGAAAATTGAAATTTTTGAAAATTAAG
130 TATTTTTTGAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAATTGAAATTTTTGAAAAGTAAG
* * *
1483788 AAAA-GATTTTCAGATTTTCTTTCCTAGT--A-TATTTCCAAAAATTGGTAAGTCCTTCGGGCCA
195 AAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCC-AAAATTGGTAAGTCCTTCGGGCCA
* **
1483849 TCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTTGGGCCATCTATAAGTTTTTCGAGCAAGAT
259 TCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTTGGGTCATCTATAAGCCTTTCGAGCAAGAT
* * * ** * * * *
1483914 GATAAGTTCTTTAGGCCATCCTTAATTCCTTCGGACATGATATTTTCACATATTTTTTGAAAAAT
324 GATAAGTCCTTTGGGCCATCCATAAGACCTTCGGGCATGATGTTTTCACATGTTTTTCGAAAAAT
* * * * * *
1483979 CAGAAAAATATCTTATTTAAATATTAAAATTGAAATTTTTGAAAAGTAAGAAAATGAATTTCAAA
389 GAGAAAAATTTCTCATTTAAATCTGAAAATTGAAATTTTTGAAAAGTAAGAAAATGATTTTCAAA
* * *
1484044 GGTTCTTACCTAGTAAACTATTTCCAATATTTGTA
454 GTTTCTTACCTAGTAAACTATTTCCAAAATTGGTA
** * * * *
1484079 AG-TCTTTCGGGCCATCTGTAAGTATTTCAAGCATGATGTGTAAATCCTCCGGGTCATCTATAAG
1 AGTTC-TTCGGGCCATCAATAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAG
* * * * *
1484143 CATATCGAGAAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGATGTTTTCACA
65 CCTTTCGAGCAAGATGATAAGTTCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACA
* * ** *
1484208 TCTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAATTGAAAAATTTGAAAAGTATG
130 TATTTTTTGAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAATTGAAATTTTTGAAAAGTAAG
* * *
1484273 AAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCTAAAATTGGTAAGTCCTTTGGGCCAA
195 AAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCAT
* * * *
1484338 CAGTAAATCTTTCGAGCATAATTAGTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATG
260 CAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTTGGGTCATCTATAAGCCTTTCGAGCAAGATG
** *
1484403 ATAAGTGGTTTGGGCCATCCATAAGACCTTCGGGCATGATGTTTTCAAATGTTTTTCGAAAAATG
325 ATAAGTCCTTTGGGCCATCCATAAGACCTTCGGGCATGATGTTTTCACATGTTTTTCGAAAAATG
* * *
1484468 AGAAAAGTTTCTCATTTAAATCTGAAAATTGAAATTTTTGAAAAGTAAGAAAATAATTTTCAGAG
390 AGAAAAATTTCTCATTTAAATCTGAAAATTGAAATTTTTGAAAAGTAAGAAAATGATTTTCAAAG
*
1484533 TTTCTTACCTAGTAAAATATTTCCAAAAATTGGTA
455 TTTCTTACCTAGTAAACTATTTCC-AAAATTGGTA
* * *
1484568 AGTTCTTCGGGCCATCAATAAGTCTTTCGAGCATGATGAGTAAATCCTTTGGGTCATTTATAAGT
1 AGTTCTTCGGGCCATCAATAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGC
* * * *
1484633 CTTTCAAACAAGATGATAAGTTCTTTGGGCCATCCATAAGTCCTTCGGGCAGGATGTTTTCACAT
66 CTTTCGAGCAAGATGATAAGTTCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACAT
* * *
1484698 ATTTTTTGAAAAATGAGAAAAGTTTCTCATTAAAATATTAAAATTGAAATTTTTGAAAAGTAAGA
131 ATTTTTTGAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAATTGAAATTTTTGAAAAGTAAGA
* * * * * *
1484763 AAATGAATTTCAAAGTTTCCTAACTAGTAAACTATTTCCAAAATTGGTAAGTCTTTTGGGCCATC
196 AAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATC
* * * * * ** * *
1484828 AGTATGTGTTTCAAGCATGATGTGTGAATCCTTCAGGTCATCTATAAACCTTTCGAGAAAGATGA
261 AGTAAGTCTTTCGAGCATGATGAGTAAATCCTTTGGGTCATCTATAAGCCTTTCGAGCAAGATGA
* * * * *
1484893 TGAGTCCTTCGGGCCATCCATAAGACCTT-AGGCATGATGTTTTCACATGTTTTTCAAAAAATAA
326 TAAGTCCTTTGGGCCATCCATAAGACCTTCGGGCATGATGTTTTCACATGTTTTTCGAAAAATGA
* *
1484957 GAAAAGTTTCTCATTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAATGATTTTCAAAGT
391 GAAAAATTTCTCATTTAAATCTGAAAATTGAAATTTTTGAAAAGTAAGAAAATGATTTTCAAAGT
*
1485022 TTCTTACCTAGTAAACTATTTCCAAAATCGGTA
456 TTCTTACCTAGTAAACTATTTCCAAAATTGGTA
* * * *
1485055 AGTCCTTCAGGCCATCAATAAATCTTTCGAGCATGATGAGTAAATCCTTCGGGCCATCTATAAGC
1 AGTTCTTCGGGCCATCAATAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGC
* * * * *
1485120 CTTTGGAGCAAGATGATAAG-TCATTCGGGCCATCCATAAGATCTGCGAGCAGGATATTTTCACA
66 CTTTCGAGCAAGATGATAAGTTC-TTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACA
* * * *
1485184 TGTTTTTTGATAAATGAGAAATATTTTCTCATTTAAATCTGAAAAATTAAAATTTCTT-AAAAGT
130 TATTTTTTGAAAAATGAGAAA-AGTTTCTCATTTAAATCT-AAAAATTGAAATTT-TTGAAAAGT
*
1485248 AAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACAATTTCCAAAATTGGTAAGTCCTTCGGGC
192 AAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGC
* * *
1485313 CATTAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTTGTGTCATATATAAGCCTTTCGAGCAAG
257 CATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTTGGGTCATCTATAAGCCTTTCGAGCAAG
* * * * * *
1485378 ATGATAACTCATTCGGGCCATCCTTAAGACCTTCGGGCAGGATGTTTTCATATGTTTTTCGAAAA
322 ATGATAAGTCCTTTGGGCCATCCATAAGACCTTCGGGCATGATGTTTTCACATGTTTTTCGAAAA
* * * * *
1485443 ATGAGAAAACTTT-TCATTTAAATTTGAAAATTAAAATTTTTGAAAAGTAAGAAAACGATTTCCA
387 ATGAGAAAAATTTCTCATTTAAATCTGAAAATTGAAATTTTTGAAAAGTAAGAAAATGATTTTCA
* * *
1485507 TAGTTT-TGTACCTATTAAACTACTTCCAAAATTGGTA
452 AAGTTTCT-TACCTAGTAAACTATTTCCAAAATTGGTA
*
1485544 AGTCCTTC
1 AGTTCTTC
1485552 TGGTGATCTG
Statistics
Matches: 1686, Mismatches: 250, Indels: 39
0.85 0.13 0.02
Matches are distributed among these distances:
483 9 0.01
484 334 0.20
485 50 0.03
486 196 0.12
487 150 0.09
488 345 0.20
489 560 0.33
490 42 0.02
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (488 bp):
AGTTCTTCGGGCCATCAATAAGTCTTTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGC
CTTTCGAGCAAGATGATAAGTTCTTCGGGCCATCCATAAGACCTTCGGGCAGGATGTTTTCACAT
ATTTTTTGAAAAATGAGAAAAGTTTCTCATTTAAATCTAAAAATTGAAATTTTTGAAAAGTAAGA
AAACGATTTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATC
AGTAAGTCTTTCGAGCATGATGAGTAAATCCTTTGGGTCATCTATAAGCCTTTCGAGCAAGATGA
TAAGTCCTTTGGGCCATCCATAAGACCTTCGGGCATGATGTTTTCACATGTTTTTCGAAAAATGA
GAAAAATTTCTCATTTAAATCTGAAAATTGAAATTTTTGAAAAGTAAGAAAATGATTTTCAAAGT
TTCTTACCTAGTAAACTATTTCCAAAATTGGTA
Found at i:1484842 original size:733 final size:731
Alignment explanation
Indices: 1483117--1485547 Score: 3221
Period size: 733 Copynumber: 3.3 Consensus size: 731
1483107 CTAGTTCTTT
* * * * * *
1483117 GGGCCATCAATAAGTCTTTAGAGAATGATGAGTAATTCCTTCGGATC-TTCTATATGTCTTTCGA
1 GGGCCATCAATAAGTCTTTCGAGCATGATGAGTAAATCCTTTGGGTCATT-TATAAGTCTTTCGA
* * *
1483181 GCAAGATGATAAG-TCATTCAGGCCATCGATAAGACCTTTGGGCAGGATATTTTCATATATTTTT
65 GCAAGATGATAAGTTCATTCAGGCCATCCATAAGACCTTCGGGCAGGATATTTTCACATATTTTT
* * *
1483245 TG-AAAATGAGAAAATTTTCTCATTTAAATCTGAAAATTGAAATTTTTGAAAAGTAAG-AAACGA
130 TGAAAAATGAGAAAAATTTCTCATTTAAATATTAAAATTGAAATTTTTGAAAAGTAAGAAAACGA
* ** * * * *
1483308 TTTTCAAAGTTTCTTATGTAGTAAACTATTTCCAAAATTTGTAAGTCCTCCGAGCCATCAGTAAG
195 ATTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCGGGCCATCAGTAAG
* * * * * * * * * * * *
1483373 TCTTTCGACCATGATGAGGAAATCTTTTGGCTCACCTATAAGCTTTTCAAGCAAGATGATAAGTC
260 TATTTCAAGCATGATGTGTAAATCCTTCGGGTCATCTATAAGCATTTCGAGAAAGATGATAAGTC
* * * * *
1483438 TTTCGAGCCATCCATAAGATCTTTGGGCATGATGTTTTCACATATTTTTTGAAAAATGAGAAAAA
325 CTTCGGGCCATCCATAAGA-CCTTGGGCATGATGTTTTCACATATTTTTCGAAAAATGAGAAAAG
* * *
1483503 TTTCTCATTTAAATCTAAAAATTG-AAATTTTCGAAGAGTAAGAAAACGATTCTGAAAGTTTCTT
389 TTTCTCATTTAAATCTAAAAATTGAAAATTTT-GAAAAGTAAGAAAACGATTTTCAAAGTTTCTT
* * * ** * * * *
1483567 ACCTAGTAAATTATTTCGAAAATTAGTAAGTTATTCCGTCCATCAATAAGTCTTTCGAGCATTAT
453 ACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCAGGCCATCAATAAATCTTTCGAGCATAAT
* * * *
1483632 GT-GTAAATCCTTCGGGCCAACCATAAGCCTTTCGAGCAAGATGATAAGTTTTTCGGGCCATACA
518 -TAGTAAATCCTTCGGGCCATCTATAAGCCTTTCGAGCAAGATGATAAGTATTT-GGGCCATCCA
*
1483696 TAAGACCTTCGTGC-TAGATGTTTTCACATGTTTTTTGAAAAATGA-AAAAGTTTCTCATTTAAA
581 TAAGACCTTCGAGCAT-GATGTTTTCACATGTTTTTTGAAAAATGAGAAAAGTTTCTCATTTAAA
* * *
1483759 TCTGAAAATTGAAATTTTTGAAAATTAAGAAAAGATTTTCAGATTTTCTTTCCTAGT---ATATT
645 TCTGAAAATTGAAATTTTTGAAAAGTAAGAAAAGATTTTCAGAGTTTCTTACCTAGTAAAATATT
1483821 TCCAAAAATTGGTAAGTCCTTC
710 TCCAAAAATTGGTAAGTCCTTC
* * * *
1483843 GGGCCATCAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTTGGGCCATCTATAAGTTTTTCGAG
1 GGGCCATCAATAAGTCTTTCGAGCATGATGAGTAAATCCTTTGGGTCATTTATAAGTCTTTCGAG
* * ** * *
1483908 CAAGATGATAAGTTC-TTTAGGCCATCCTTAATTCCTTCGGACATGATATTTTCACATATTTTTT
66 CAAGATGATAAGTTCATTCAGGCCATCCATAAGACCTTCGGGCAGGATATTTTCACATATTTTTT
* * * *
1483972 GAAAAATCAGAAAAATATCTTATTTAAATATTAAAATTGAAATTTTTGAAAAGTAAGAAAATGAA
131 GAAAAATGAGAAAAATTTCTCATTTAAATATTAAAATTGAAATTTTTGAAAAGTAAGAAAACGAA
* * * *
1484037 TTTCAAAGGTTCTTACCTAGTAAACTATTTCCAATATTTGTAAGTCTTTCGGGCCATCTGTAAGT
196 TTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCGGGCCATCAGTAAGT
* *
1484102 ATTTCAAGCATGATGTGTAAATCCTCCGGGTCATCTATAAGCATATCGAGAAAGATGATAAGTCC
261 ATTTCAAGCATGATGTGTAAATCCTTCGGGTCATCTATAAGCATTTCGAGAAAGATGATAAGTCC
* * *
1484167 TTCGGGCCATCCATAAGACCTTCGGGTAGGATGTTTTCACATCTTTTTCGAAAAATGAGAAAAGT
326 TTCGGGCCATCCATAAGACCTT-GGGCATGATGTTTTCACATATTTTTCGAAAAATGAGAAAAGT
* *
1484232 TTCTCATTTAAATCTAAAAATTGAAAAATTTGAAAAGTATGAAAACGATTTTCAAAGTTTCTTAC
390 TTCTCATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAACGATTTTCAAAGTTTCTTAC
* ** * *
1484297 CTAGTAAACTATTTCTAAAATTGGTAAGTCCTTTGGGCCAACAGTAAATCTTTCGAGCATAATTA
455 CTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCAGGCCATCAATAAATCTTTCGAGCATAATTA
* *
1484362 GTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATAAGTGGTTTGGGCCATCCATAA
520 GTAAATCCTTCGGGCCATCTATAAGCCTTTCGAGCAAGATGATAAGT-ATTTGGGCCATCCATAA
* * *
1484427 GACCTTCGGGCATGATGTTTTCAAATGTTTTTCGAAAAATGAGAAAAGTTTCTCATTTAAATCTG
584 GACCTTCGAGCATGATGTTTTCACATGTTTTTTGAAAAATGAGAAAAGTTTCTCATTTAAATCTG
*
1484492 AAAATTGAAATTTTTGAAAAGTAAGAAAATAATTTTCAGAGTTTCTTACCTAGTAAAATATTTCC
649 AAAATTGAAATTTTTGAAAAGTAAGAAAA-GATTTTCAGAGTTTCTTACCTAGTAAAATATTTCC
*
1484557 AAAAATTGGTAAGTTCTTC
713 AAAAATTGGTAAGTCCTTC
* *
1484576 GGGCCATCAATAAGTCTTTCGAGCATGATGAGTAAATCCTTTGGGTCATTTATAAGTCTTTCAAA
1 GGGCCATCAATAAGTCTTTCGAGCATGATGAGTAAATCCTTTGGGTCATTTATAAGTCTTTCGAG
** * *
1484641 CAAGATGATAAGTTC-TTTGGGCCATCCATAAGTCCTTCGGGCAGGATGTTTTCACATATTTTTT
66 CAAGATGATAAGTTCATTCAGGCCATCCATAAGACCTTCGGGCAGGATATTTTCACATATTTTTT
* * *
1484705 GAAAAATGAGAAAAGTTTCTCATTAAAATATTAAAATTGAAATTTTTGAAAAGTAAGAAAATGAA
131 GAAAAATGAGAAAAATTTCTCATTTAAATATTAAAATTGAAATTTTTGAAAAGTAAGAAAACGAA
* * * *
1484770 TTTCAAAGTTTCCTAACTAGTAAACTATTTCCAAAATTGGTAAGTCTTTTGGGCCATCAGTATGT
196 TTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCGGGCCATCAGTAAGT
* * * * * *
1484835 GTTTCAAGCATGATGTGTGAATCCTTCAGGTCATCTATAAACCTTTCGAGAAAGATGATGAGTCC
261 ATTTCAAGCATGATGTGTAAATCCTTCGGGTCATCTATAAGCATTTCGAGAAAGATGATAAGTCC
* * * *
1484900 TTCGGGCCATCCATAAGACCTTAGGCATGATGTTTTCACATGTTTTTCAAAAAATAAGAAAAGTT
326 TTCGGGCCATCCATAAGACCTTGGGCATGATGTTTTCACATATTTTTCGAAAAATGAGAAAAGTT
* *
1484965 TCTCATTTAAATCTGAAAATTGAAAATTTTGAAAAGTAAGAAAATGATTTTCAAAGTTTCTTACC
391 TCTCATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAACGATTTTCAAAGTTTCTTACC
* * *
1485030 TAGTAAACTATTTCCAAAATCGGTAAGTCCTTCAGGCCATCAATAAATCTTTCGAGCATGATGAG
456 TAGTAAACTATTTCCAAAATTGGTAAGTCCTTCAGGCCATCAATAAATCTTTCGAGCATAATTAG
* *
1485095 TAAATCCTTCGGGCCATCTATAAGCCTTTGGAGCAAGATGATAAGTCATTCGGGCCATCCATAAG
521 TAAATCCTTCGGGCCATCTATAAGCCTTTCGAGCAAGATGATAAGT-ATTTGGGCCATCCATAAG
* * * * * *
1485160 ATCTGCGAGCAGGATATTTTCACATGTTTTTTGATAAATGAGAAATATTTTCTCATTTAAATCTG
585 ACCTTCGAGCATGATGTTTTCACATGTTTTTTGAAAAATGAGAAA-AGTTTCTCATTTAAATCTG
* *
1485225 AAAAATTAAAATTTCTT-AAAAGTAAGAAAACGATTTTCAAAGTTTCTTACCTAGTAAACA-ATT
649 -AAAATTGAAATTT-TTGAAAAGTAAGAAAA-GATTTTCAGAGTTTCTTACCTAGTAAA-ATATT
1485288 TCC-AAAATTGGTAAGTCCTTC
710 TCCAAAAATTGGTAAGTCCTTC
* * * * *
1485309 GGGCCATTAGTAAGTCTTTCGAGCATGATGAGTAAATCCTTTGTGTCATATATAAGCCTTTCGAG
1 GGGCCATCAATAAGTCTTTCGAGCATGATGAGTAAATCCTTTGGGTCATTTATAAGTCTTTCGAG
* * * * * * *
1485374 CAAGATGATAA-CTCATTCGGGCCATCCTTAAGACCTTCGGGCAGGATGTTTTCATATGTTTTTC
66 CAAGATGATAAGTTCATTCAGGCCATCCATAAGACCTTCGGGCAGGATATTTTCACATATTTTTT
* *
1485438 GAAAAATGAGAAAACTTT-TCATTTAAAT-TTGAAAATTAAAATTTTTGAAAAGTAAGAAAACG-
131 GAAAAATGAGAAAAATTTCTCATTTAAATATT-AAAATTGAAATTTTTGAAAAGTAAGAAAACGA
* * *
1485500 ATTTCCATAGTTT-TGTACCTATTAAACTACTTCCAAAATTGGTAAGTC
195 ATTT-CAAAGTTTCT-TACCTAGTAAACTATTTCCAAAATTGGTAAGTC
1485548 CTTCTGGTGA
Statistics
Matches: 1503, Mismatches: 180, Indels: 38
0.87 0.10 0.02
Matches are distributed among these distances:
726 106 0.07
727 56 0.04
728 363 0.24
729 60 0.04
730 21 0.01
731 6 0.00
732 329 0.22
733 503 0.33
734 56 0.04
735 3 0.00
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.34
Consensus pattern (731 bp):
GGGCCATCAATAAGTCTTTCGAGCATGATGAGTAAATCCTTTGGGTCATTTATAAGTCTTTCGAG
CAAGATGATAAGTTCATTCAGGCCATCCATAAGACCTTCGGGCAGGATATTTTCACATATTTTTT
GAAAAATGAGAAAAATTTCTCATTTAAATATTAAAATTGAAATTTTTGAAAAGTAAGAAAACGAA
TTTCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCGGGCCATCAGTAAGT
ATTTCAAGCATGATGTGTAAATCCTTCGGGTCATCTATAAGCATTTCGAGAAAGATGATAAGTCC
TTCGGGCCATCCATAAGACCTTGGGCATGATGTTTTCACATATTTTTCGAAAAATGAGAAAAGTT
TCTCATTTAAATCTAAAAATTGAAAATTTTGAAAAGTAAGAAAACGATTTTCAAAGTTTCTTACC
TAGTAAACTATTTCCAAAATTGGTAAGTCCTTCAGGCCATCAATAAATCTTTCGAGCATAATTAG
TAAATCCTTCGGGCCATCTATAAGCCTTTCGAGCAAGATGATAAGTATTTGGGCCATCCATAAGA
CCTTCGAGCATGATGTTTTCACATGTTTTTTGAAAAATGAGAAAAGTTTCTCATTTAAATCTGAA
AATTGAAATTTTTGAAAAGTAAGAAAAGATTTTCAGAGTTTCTTACCTAGTAAAATATTTCCAAA
AATTGGTAAGTCCTTC
Found at i:1485159 original size:41 final size:42
Alignment explanation
Indices: 1485052--1485159 Score: 128
Period size: 42 Copynumber: 2.6 Consensus size: 42
1485042 TCCAAAATCG
* ** *
1485052 GTAAGTCCTTCAGGCCATCAATAAATCTTTCGAGCATGATGA
1 GTAAGTCCTTCGGGCCATCAATAAGCCTTTCGAGCAAGATGA
* * *
1485094 GTAAATCCTTCGGGCCATCTATAAGCCTTTGGAGCAAGATGA
1 GTAAGTCCTTCGGGCCATCAATAAGCCTTTCGAGCAAGATGA
* *
1485136 -TAAGTCATTCGGGCCATCCATAAG
1 GTAAGTCCTTCGGGCCATCAATAAG
1485160 ATCTGCGAGC
Statistics
Matches: 56, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
41 21 0.38
42 35 0.62
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (42 bp):
GTAAGTCCTTCGGGCCATCAATAAGCCTTTCGAGCAAGATGA
Found at i:1488839 original size:30 final size:29
Alignment explanation
Indices: 1488805--1488863 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
1488795 GATTACATCT
* *
1488805 TTAATATTTACAA-ATATTAAAAATTTATAA
1 TTAATATATA-AATATAATAAAAA-TTATAA
1488835 TTAATATATAAATATAATAAAAATTATAA
1 TTAATATATAAATATAATAAAAATTATAA
1488864 CATAACAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 8 0.31
30 18 0.69
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (29 bp):
TTAATATATAAATATAATAAAAATTATAA
Found at i:1494113 original size:3 final size:3
Alignment explanation
Indices: 1494107--1494212 Score: 203
Period size: 3 Copynumber: 35.3 Consensus size: 3
1494097 CATCATCATC
1494107 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
1494155 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT GTT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1494203 ATT ATT ATT A
1 ATT ATT ATT A
1494213 ATCAATCACT
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
3 101 1.00
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:1497883 original size:30 final size:30
Alignment explanation
Indices: 1497847--1497907 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
1497837 ATTAATATTA
1497847 TGCATCGATACACTACAGTAACTGCTACAG
1 TGCATCGATACACTACAGTAACTGCTACAG
*
1497877 TGCATCGATACGCTACAGTAACTGCTACAG
1 TGCATCGATACACTACAGTAACTGCTACAG
1497907 T
1 T
1497908 AATTTCAGCA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (30 bp):
TGCATCGATACACTACAGTAACTGCTACAG
Found at i:1498500 original size:60 final size:61
Alignment explanation
Indices: 1498424--1498538 Score: 160
Period size: 60 Copynumber: 1.9 Consensus size: 61
1498414 TTCCTCATCA
* * * *
1498424 TTTTAGCACACGAAGTGCCCTATGCGAGAATCCATACCATTAGTATGA-TTCCTTTACAAT
1 TTTTAGCACACAAAGTGCCCTATACAAAAATCCATACCATTAGTATGATTTCCTTTACAAT
* * *
1498484 TTTTAGCACATAAAGTGCCCTATATAAAAATCCATACTATTAGTATGATTTCCTT
1 TTTTAGCACACAAAGTGCCCTATACAAAAATCCATACCATTAGTATGATTTCCTT
1498539 ATCCTTGTAG
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
60 41 0.87
61 6 0.13
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.35
Consensus pattern (61 bp):
TTTTAGCACACAAAGTGCCCTATACAAAAATCCATACCATTAGTATGATTTCCTTTACAAT
Found at i:1498656 original size:118 final size:118
Alignment explanation
Indices: 1498384--1498974 Score: 619
Period size: 118 Copynumber: 5.0 Consensus size: 118
1498374 TCTCAGTGCT
* * **
1498384 CTATTTGGAATAT-CATATACTT-AATATGATTTCCTCATCATTTTAGCACACGAAGTGC-CC-T
1 CTATATGGAA-ATCCATATA-TTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCAT
*
1498445 ATGCGAGAATCCATAC-CATTAGTATGA-TTCCTT-TACAATTTTTAGCACATA-AAGTGCC
64 ATG-GA-AATCCATACAC-TCAGTATGATTTCCTTAT-C-A-TTTTAGCACATATAA-TGCC
** * * * * * *** *
1498503 CTATATAAAAATCCATACTATT-AGTATGATTTCCTTATCCTTGTAGCACCCTTAGTGCTTTTTC
1 CTATATGGAAATCCATA-TATTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATA
* * *
1498567 TGGAAATCCATACACTCAGTATGATTCCCTTACCATTTTAGCACATATAATTCC
65 TGGAAATCCATACACTCAGTATGATTTCCTTATCATTTTAGCACATATAATGCC
*
1498621 CTATATGGAAATCCATATATTCAATATGATTTCCTTATCATTTTAGCACACTCAATGCTCCATAT
1 CTATATGGAAATCCATATATTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATAT
*
1498686 GGAAATCCATACACTCAGTATGATTTCCTTATCTTTTTAGCACATATAATGCC
66 GGAAATCCATACACTCAGTATGATTTCCTTATCATTTTAGCACATATAATGCC
* * * *
1498739 CTATCTGGAAATCCATATATCCAATATGATTTCCTTATCATTATAGCACACTCAGTGCTCCATAA
1 CTATATGGAAATCCATATATTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATAT
* * * * * * *
1498804 GGAACTCCATACACTCAGTATAATTTACTTATCTTTTTAGCA-TTCTCAGTGCTC
66 GGAAATCCATACACTCAGTATGATTTCCTTATCATTTTAGCACATAT-AATGC-C
* * * * * * *
1498858 C-ATATGGAAATTCATACACTCAGTATGATTTTCTTAACTTTTTAGCACACTCAGTGCTCCATAT
1 CTATATGGAAATCCATATATTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATAT
* * *
1498922 GGAAATTCATATACTCAGTATGATTTCCTTATCATTTTAGCACATATAGTGCC
66 GGAAATCCATACACTCAGTATGATTTCCTTATCATTTTAGCACATATAATGCC
1498975 ATTTGGTAAT
Statistics
Matches: 397, Mismatches: 63, Indels: 26
0.82 0.13 0.05
Matches are distributed among these distances:
117 7 0.02
118 310 0.78
119 66 0.17
120 11 0.03
121 3 0.01
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.37
Consensus pattern (118 bp):
CTATATGGAAATCCATATATTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATAT
GGAAATCCATACACTCAGTATGATTTCCTTATCATTTTAGCACATATAATGCC
Found at i:1498965 original size:59 final size:59
Alignment explanation
Indices: 1498375--1498965 Score: 490
Period size: 59 Copynumber: 10.0 Consensus size: 59
1498365 TATTAGAACT
* * * * *
1498375 CTCAGTGCTCTATTTGGAATAT-CATATACTTAATATGATTTCCTCATCATTTTAGCACA
1 CTCAGTGCTCCATATGGAA-ATCCATATACTCAGTATGATTTCCTTATCATTTTAGCACA
** * *
1498434 CGAAGTGC-CC-TATGCGAGAATCCATA-CCATTAGTATGA-TTCCTT-TACAATTTTTAGCACA
1 CTCAGTGCTCCATATG-GA-AATCCATATAC-TCAGTATGATTTCCTTAT-C-A-TTTTAGCACA
* ** * * * *
1498494 -TAAAGTGC-CCTATATAAAAATCCATACTA-TTAGTATGATTTCCTTATCCTTGTAGCACC
1 CT-CAGTGCTCC-ATATGGAAATCCATA-TACTCAGTATGATTTCCTTATCATTTTAGCACA
* *** * * * *
1498553 CTTAGTGCTTTTTCTGGAAATCCATACACTCAGTATGATTCCCTTACCATTTTAGCACA
1 CTCAGTGCTCCATATGGAAATCCATATACTCAGTATGATTTCCTTATCATTTTAGCACA
* * * * *
1498612 -TATAATTC-CCTATATGGAAATCCATATATTCAATATGATTTCCTTATCATTTTAGCACA
1 CT-CAGTGCTCC-ATATGGAAATCCATATACTCAGTATGATTTCCTTATCATTTTAGCACA
* * *
1498671 CTCAATGCTCCATATGGAAATCCATACACTCAGTATGATTTCCTTATCTTTTTAGCACA
1 CTCAGTGCTCCATATGGAAATCCATATACTCAGTATGATTTCCTTATCATTTTAGCACA
* * * * *
1498730 -TATAATGC-CCTATCTGGAAATCCATATA-TCCAATATGATTTCCTTATCATTATAGCACA
1 CT-CAGTGCTCC-ATATGGAAATCCATATACT-CAGTATGATTTCCTTATCATTTTAGCACA
* * * * * * **
1498789 CTCAGTGCTCCATAAGGAACTCCATACACTCAGTATAATTTACTTATCTTTTTAGCATT
1 CTCAGTGCTCCATATGGAAATCCATATACTCAGTATGATTTCCTTATCATTTTAGCACA
* * * * *
1498848 CTCAGTGCTCCATATGGAAATTCATACACTCAGTATGATTTTCTTAACTTTTTAGCACA
1 CTCAGTGCTCCATATGGAAATCCATATACTCAGTATGATTTCCTTATCATTTTAGCACA
*
1498907 CTCAGTGCTCCATATGGAAATTCATATACTCAGTATGATTTCCTTATCATTTTAGCACA
1 CTCAGTGCTCCATATGGAAATCCATATACTCAGTATGATTTCCTTATCATTTTAGCACA
1498966 TATAGTGCCA
Statistics
Matches: 429, Mismatches: 76, Indels: 54
0.77 0.14 0.10
Matches are distributed among these distances:
57 4 0.01
58 18 0.04
59 352 0.82
60 43 0.10
61 8 0.02
62 4 0.01
ACGTcount: A:0.30, C:0.23, G:0.11, T:0.37
Consensus pattern (59 bp):
CTCAGTGCTCCATATGGAAATCCATATACTCAGTATGATTTCCTTATCATTTTAGCACA
Found at i:1501450 original size:64 final size:65
Alignment explanation
Indices: 1501353--1501561 Score: 221
Period size: 64 Copynumber: 3.2 Consensus size: 65
1501343 TTTTCAAAGG
* * * * *
1501353 CATGCACCGATGCATCAATCCATGCATCGATGCACCATTGAATAAATT-GAACATCGAATGCATT
1 CATGCATCGATGCA-CAATCAATGCATCGATGCACCATTGGATATATTAAAACATCGAATGCATT
1501417 T
65 T
** * * *
1501418 CATGCATCGATGCACTCTCTATGCATCGATGCA-C-TTAGGTTTTATTAAAACATCGAATGCATT
1 CATGCATCGATGCACAATCAATGCATCGATGCACCATT-GGATATATTAAAACATCGAATGCATT
1501481 T
65 T
* * * *
1501482 CATGCATCGATGCACAATCAATGCACCGATGCACTCA--GGCTATTTTCAAACATCGAATGCATT
1 CATGCATCGATGCACAATCAATGCATCGATGCAC-CATTGGATATATTAAAACATCGAATGCATT
1501545 T
65 T
*
1501546 TATGCATCGATGCACA
1 CATGCATCGATGCACA
1501562 CTTGGTGCAC
Statistics
Matches: 121, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
62 2 0.02
63 6 0.05
64 99 0.82
65 13 0.11
66 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (65 bp):
CATGCATCGATGCACAATCAATGCATCGATGCACCATTGGATATATTAAAACATCGAATGCATTT
Found at i:1501571 original size:64 final size:63
Alignment explanation
Indices: 1501402--1501580 Score: 234
Period size: 64 Copynumber: 2.8 Consensus size: 63
1501392 GAATAAATTG
* * * *
1501402 AACATCGAATGCATTTCATGCATCGATGCACTCTCTATGCATCGATGCACTTAGGTTTTATTAA
1 AACATCGAATGCATTTCATGCATCGATGCACACT-TATGCACCGATGCACTCAGGTATTATTAA
* * *
1501466 AACATCGAATGCATTTCATGCATCGATGCACAATCAATGCACCGATGCACTCAGGCTATT-TTCA
1 AACATCGAATGCATTTCATGCATCGATGCACACT-TATGCACCGATGCACTCAGG-TATTATTAA
* *
1501530 AACATCGAATGCATTTTATGCATCGATGCACACTTGGTGCACCGATGCACT
1 AACATCGAATGCATTTCATGCATCGATGCACACTT-ATGCACCGATGCACT
1501581 AAGTGTTCCA
Statistics
Matches: 102, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
64 99 0.97
65 3 0.03
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.30
Consensus pattern (63 bp):
AACATCGAATGCATTTCATGCATCGATGCACACTTATGCACCGATGCACTCAGGTATTATTAA
Found at i:1502888 original size:19 final size:19
Alignment explanation
Indices: 1502853--1502890 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
1502843 GATATTGATA
*
1502853 CTCCTTGTAATAGAACTAT
1 CTCCTTGTAATACAACTAT
1502872 CTCCTTG-ATATACAACTAT
1 CTCCTTGTA-ATACAACTAT
1502891 GTATATTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 1 0.06
19 16 0.94
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.37
Consensus pattern (19 bp):
CTCCTTGTAATACAACTAT
Found at i:1503730 original size:30 final size:31
Alignment explanation
Indices: 1503685--1503742 Score: 109
Period size: 30 Copynumber: 1.9 Consensus size: 31
1503675 TTTTTAATGA
1503685 ACAGTACTCGTGAACAGTGCATCGATGCGCT
1 ACAGTACTCGTGAACAGTGCATCGATGCGCT
1503716 ACAGTACT-GTGAACAGTGCATCGATGC
1 ACAGTACTCGTGAACAGTGCATCGATGC
1503743 ATCAAAACAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
30 19 0.70
31 8 0.30
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (31 bp):
ACAGTACTCGTGAACAGTGCATCGATGCGCT
Found at i:1504235 original size:44 final size:44
Alignment explanation
Indices: 1504161--1504275 Score: 158
Period size: 44 Copynumber: 2.6 Consensus size: 44
1504151 GATTTCTTAT
* *
1504161 CAATATACATACCATTTAATCCATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCA-TTATTCCATAAGCTCGTAAGCTTATTTTAC
*
1504206 CATTATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
* * * *
1504250 CAATCTACTTACTATAATTTCATAAG
1 CAATATACTTACCATTATTCCATAAG
1504276 AAATTTGTAC
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
44 50 0.81
45 12 0.19
ACGTcount: A:0.34, C:0.22, G:0.06, T:0.38
Consensus pattern (44 bp):
CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
Found at i:1504599 original size:118 final size:118
Alignment explanation
Indices: 1504340--1504968 Score: 618
Period size: 118 Copynumber: 5.3 Consensus size: 118
1504330 TCTGGAATAT
** * ** *
1504340 CATATACTT-AATATGATTTCCTCCTCCTTTTAGCACACGAAGTGC-CC-TATGCGATAATTCAT
1 CATATA-TTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATATG-GA-AATCCAT
1504402 AC-CATTAGTATGA-TTCCTTTACCATTTTTAGCACATA-AAGTGCCCTATATGAAAATC
63 ACAC-TTAGTATGATTTCC-TTACCA-TTTTAGCACATACAA-TGCCCTATATGAAAATC
* * * * * * ** *
1504459 CATACTATT-AGTATGATTTCCTTATCCTTGTAGCACCCTTAGTTCTCTTTCTGGAAATCCATAC
1 CATA-TATTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATATGGAAATCCATAC
* * *
1504523 ACTTAGTATGATTCCCTTACCATTTTAGCACATACAATGCCCTATCTGGAAATC
65 ACTTAGTATGATTTCCTTACCATTTTAGCACATACAATGCCCTATATGAAAATC
* *
1504577 CATATATTCAATATGATTTCCTTATAATTTTAGCACACTCAATGCTCCATATGGAAATCCATACA
1 CATATATTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATATGGAAATCCATACA
* * * * *
1504642 CTCAGTATGATTTCCTTATCTTTTTAGCACATATAATGCCCTATCTGCAAAATC
66 CTTAGTATGATTTCCTTACCATTTTAGCACATACAATGCCCTATATG-AAAATC
* *
1504696 CATATATTCAATATGATTTCCTTATCATTATAGCACACTCAGTGCTCTATATGGAAATCCATACA
1 CATATATTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATATGGAAATCCATACA
* * * * *
1504761 CTTAGTATGATTTCCTTATC-TCTTTAGCACACT-CAGTACTCC-ATATGGAAATT
66 CTTAGTATGATTTCCTTACCAT-TTTAGCACA-TACAATGC-CCTATATGAAAATC
* * * * *
1504814 CATACACTCAATATGATTTCCTTAACTTTTTAGCACACTCAGTGCTCCATATGGAAATTCATACA
1 CATATATTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATATGGAAATCCATACA
* * * * *
1504879 CTCAGTATGATTTCCTTAACTTTTTAGCACACT-CAGTGCTCC-ATAT-AGAAATT
66 CTTAGTATGATTTCCTTACCATTTTAGCACA-TACAATGC-CCTATATGA-AAATC
* * * *
1504932 CATACACTCAGTATGATTTCCTTGTCATTTTAGCACA
1 CATATATTCAATATGATTTCCTTATCATTTTAGCACA
1504969 TATAGTACCA
Statistics
Matches: 440, Mismatches: 57, Indels: 27
0.84 0.11 0.05
Matches are distributed among these distances:
117 4 0.01
118 260 0.59
119 161 0.37
120 12 0.03
121 3 0.01
ACGTcount: A:0.30, C:0.24, G:0.10, T:0.37
Consensus pattern (118 bp):
CATATATTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATATGGAAATCCATACA
CTTAGTATGATTTCCTTACCATTTTAGCACATACAATGCCCTATATGAAAATC
Found at i:1504753 original size:237 final size:236
Alignment explanation
Indices: 1504327--1504968 Score: 688
Period size: 237 Copynumber: 2.7 Consensus size: 236
1504317 TCTCAGTGCT
** ** *
1504327 CTATCTGGAATATCATATACTT-AATATGATTTCCTCCTCCTTTTAGCACAC-GAAGTGC-CC-T
1 CTATCTGGAA-ATCATATA-TTCAATATGATTTCCTTATAATTTTAGCACACTCAA-TGCTCCAT
* *
1504388 ATGCGATAATTCATAC-CATTAGTATGA-TTCCTTTACCATTTTTAGCACATAAAGTGCCCTATA
63 ATG-GA-AATTCATACAC-TCAGTATGATTTCC-TTAAC-TTTTTAGCACATAAAGTGCCCTATA
* * * * * * * *
1504451 TGAAAATCCATACTATTAGTATGATTTCCTTATCCTTGTAGCACCCTTAGTTCTCTTTCTGGAAA
123 TGAAAATCCATACTATTAATATGATTTCCTTATCATTATAGCACACTCAGTGCTCTATATGGAAA
*
1504516 TCCATACACTTAGTATGATTCCCTTACCAT-TTTAGCACA-TACAATGC-C
188 TCCATACACTTAGTATGATTCCCTTACC-TCTTTAGCACACT-CAATACTC
1504564 CTATCTGGAAATCCATATATTCAATATGATTTCCTTATAATTTTAGCACACTCAATGCTCCATAT
1 CTATCTGGAAAT-CATATATTCAATATGATTTCCTTATAATTTTAGCACACTCAATGCTCCATAT
* * *
1504629 GGAAATCCATACACTCAGTATGATTTCCTTATCTTTTTAGCACATATAA-TGCCCTATCTGCAAA
65 GGAAATTCATACACTCAGTATGATTTCCTTAACTTTTTAGCACATA-AAGTGCCCTATATG-AAA
1504693 ATCCATA-TATTCAATATGATTTCCTTATCATTATAGCACACTCAGTGCTCTATATGGAAATCCA
128 ATCCATACTATT-AATATGATTTCCTTATCATTATAGCACACTCAGTGCTCTATATGGAAATCCA
* * *
1504757 TACACTTAGTATGATTTCCTTATCTCTTTAGCACACTCAGTACTC
192 TACACTTAGTATGATTCCCTTACCTCTTTAGCACACTCAATACTC
* * * * *
1504802 C-ATATGGAAATTCATACACTCAATATGATTTCCTTA-ACTTTTTAGCACACTCAGTGCTCCATA
1 CTATCTGGAAA-TCATATATTCAATATGATTTCCTTATA-ATTTTAGCACACTCAATGCTCCATA
*
1504865 TGGAAATTCATACACTCAGTATGATTTCCTTAACTTTTTAGCACACT-CAGTGCTCC-ATAT-AG
64 TGGAAATTCATACACTCAGTATGATTTCCTTAACTTTTTAGCACA-TAAAGTGC-CCTATATGA-
* * * * *
1504927 AAATTCATAC-ACTCAGTATGATTTCCTTGTCATTTTAGCACA
126 AAATCCATACTA-TTAATATGATTTCCTTATCATTATAGCACA
1504969 TATAGTACCA
Statistics
Matches: 349, Mismatches: 35, Indels: 43
0.82 0.08 0.10
Matches are distributed among these distances:
235 1 0.00
236 68 0.19
237 258 0.74
238 18 0.05
239 4 0.01
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.37
Consensus pattern (236 bp):
CTATCTGGAAATCATATATTCAATATGATTTCCTTATAATTTTAGCACACTCAATGCTCCATATG
GAAATTCATACACTCAGTATGATTTCCTTAACTTTTTAGCACATAAAGTGCCCTATATGAAAATC
CATACTATTAATATGATTTCCTTATCATTATAGCACACTCAGTGCTCTATATGGAAATCCATACA
CTTAGTATGATTCCCTTACCTCTTTAGCACACTCAATACTC
Found at i:1504793 original size:59 final size:58
Alignment explanation
Indices: 1504310--1504968 Score: 532
Period size: 59 Copynumber: 11.1 Consensus size: 58
1504300 TCTTATAATA
* * * **
1504310 TTAGCA-ATCTCAGTGCTCTATCTGGAATAT-CATATACTTAATATGATTTCCTCCTCCTT
1 TTAGCACA-CTCAGTGCTCTATATGGAA-ATCCATACACTTAGTATGATTTCCTTAT-CTT
** * * *
1504369 TTAGCACACGAAGTGC-C-CTATGCGATAATTCATAC-CATTAGTATGA-TTCCTTTACCATTT
1 TTAGCACACTCAGTGCTCTATATG-GA-AATCCATACAC-TTAGTATGATTTCC-TTATC--TT
* * *
1504429 TTAGCACA-TAAAGTGCCCTATATGAAAATCCATACTA-TTAGTATGATTTCCTTATCCTT
1 TTAGCACACT-CAGTGCTCTATATGGAAATCCATAC-ACTTAGTATGATTTCCTTAT-CTT
* * * * * * * *
1504488 GTAGCACCCTTAGTTCTCTTTCTGGAAATCCATACACTTAGTATGATTCCCTTACCATT
1 TTAGCACACTCAGTGCTCTATATGGAAATCCATACACTTAGTATGATTTCCTTATC-TT
* * * * * *
1504547 TTAGCACA-TACAATGCCCTATCTGGAAATCCATATA-TTCAATATGATTTCCTTATAATT
1 TTAGCACACT-CAGTGCTCTATATGGAAATCCATACACTT-AGTATGATTTCCTTAT-CTT
* * *
1504606 TTAGCACACTCAATGCTCCATATGGAAATCCATACACTCAGTATGATTTCCTTATCTTT
1 TTAGCACACTCAGTGCTCTATATGGAAATCCATACACTTAGTATGATTTCCTTATC-TT
* * * * * * *
1504665 TTAGCACA-TATAATGCCCTATCTGCAAAATCCATATA-TTCAATATGATTTCCTTATCATT
1 TTAGCACACT-CAGTGCTCTATATG-GAAATCCATACACTT-AGTATGATTTCCTTATC-TT
*
1504725 ATAGCACACTCAGTGCTCTATATGGAAATCCATACACTTAGTATGATTTCCTTATCTCT
1 TTAGCACACTCAGTGCTCTATATGGAAATCCATACACTTAGTATGATTTCCTTATCT-T
* * * * * *
1504784 TTAGCACACTCAGTACTCCATATGGAAATTCATACACTCAATATGATTTCCTTAACTTT
1 TTAGCACACTCAGTGCTCTATATGGAAATCCATACACTTAGTATGATTTCCTTATC-TT
* * * *
1504843 TTAGCACACTCAGTGCTCCATATGGAAATTCATACACTCAGTATGATTTCCTTAACTTT
1 TTAGCACACTCAGTGCTCTATATGGAAATCCATACACTTAGTATGATTTCCTTATC-TT
* * * * *
1504902 TTAGCACACTCAGTGCTCCATATAGAAATTCATACACTCAGTATGATTTCCTTGTCATT
1 TTAGCACACTCAGTGCTCTATATGGAAATCCATACACTTAGTATGATTTCCTTATC-TT
1504961 TTAGCACA
1 TTAGCACA
1504969 TATAGTACCA
Statistics
Matches: 496, Mismatches: 73, Indels: 62
0.79 0.12 0.10
Matches are distributed among these distances:
57 3 0.01
58 18 0.04
59 375 0.76
60 88 0.18
61 8 0.02
62 4 0.01
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.37
Consensus pattern (58 bp):
TTAGCACACTCAGTGCTCTATATGGAAATCCATACACTTAGTATGATTTCCTTATCTT
Found at i:1504847 original size:296 final size:296
Alignment explanation
Indices: 1504440--1504972 Score: 752
Period size: 296 Copynumber: 1.8 Consensus size: 296
1504430 TAGCACATAA
* * *
1504440 AGTGCCCTATATGAAAATCCATACTATTAGTATGATTTCCTTATCCTTGTAGCACCCTTAGTTCT
1 AGTGCCCTATATGAAAATCCATACTATTAGTATGATTTCCTTATCCTTGTAGCACACTCAGTACT
** * * * *
1504505 CTTTCTGGAAATCCATACACTTAGTATGATTCCCTTACCATTTTAGCACA-TACAATGC-CCTAT
66 CCATATGGAAATCCATACACTCAATATGATTCCCTTAACATTTTAGCACACT-CAATGCTCC-AT
* * * *
1504568 CTGGAAATCCATATATTCAATATGATTTCCTTATA-ATTTTAGCACACTCAATGCTCCATATGGA
129 ATGGAAATCCATACACTCAATATGATTTCCTTA-ACATTTTAGCACACTCAATGCTCCATATAGA
*
1504632 AATCCATACACTCAGTATGATTTCCTTATCTTTTTAGCACATATAATGCCCTATCTGCAAAATCC
193 AATCCATACACTCAGTATGATTTCCTTATCATTTTAGCACATATAATGCCCTATCTGCAAAATCC
1504697 ATATATTCAATATGATTTCCTTATCATTATAGCACACTC
258 ATATATTCAATATGATTTCCTTATCATTATAGCACACTC
* *
1504736 AGTGCTCTATATGGAAATCCATAC-ACTTAGTATGATTTCCTTATCTCTT-TAGCACACTCAGTA
1 AGTGCCCTATATGAAAATCCATACTA-TTAGTATGATTTCCTTATC-CTTGTAGCACACTCAGTA
* * * *
1504799 CTCCATATGGAAATTCATACACTCAATATGATTTCCTTAACTTTTTAGCACACTCAGTGCTCCAT
64 CTCCATATGGAAATCCATACACTCAATATGATTCCCTTAACATTTTAGCACACTCAATGCTCCAT
* * * *
1504864 ATGGAAATTCATACACTCAGTATGATTTCCTTAACTTTTTAGCACACTCAGTGCTCCATATAGAA
129 ATGGAAATCCATACACTCAATATGATTTCCTTAACATTTTAGCACACTCAATGCTCCATATAGAA
* *
1504929 ATTCATACACTCAGTATGATTTCCTTGTCATTTTAGCACATATA
194 ATCCATACACTCAGTATGATTTCCTTATCATTTTAGCACATATA
1504973 GTACCATTTG
Statistics
Matches: 206, Mismatches: 26, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
295 2 0.01
296 198 0.96
297 6 0.03
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.37
Consensus pattern (296 bp):
AGTGCCCTATATGAAAATCCATACTATTAGTATGATTTCCTTATCCTTGTAGCACACTCAGTACT
CCATATGGAAATCCATACACTCAATATGATTCCCTTAACATTTTAGCACACTCAATGCTCCATAT
GGAAATCCATACACTCAATATGATTTCCTTAACATTTTAGCACACTCAATGCTCCATATAGAAAT
CCATACACTCAGTATGATTTCCTTATCATTTTAGCACATATAATGCCCTATCTGCAAAATCCATA
TATTCAATATGATTTCCTTATCATTATAGCACACTC
Found at i:1514546 original size:17 final size:17
Alignment explanation
Indices: 1514524--1514570 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
1514514 TTTTGGTCAA
*
1514524 GGTCAACAGTCAACGGT
1 GGTCAACAGTCAACGGC
**
1514541 GGTCAATGGTCAACGGC
1 GGTCAACAGTCAACGGC
*
1514558 AGTCAACAGTCAA
1 GGTCAACAGTCAA
1514571 TGGCTCGGTG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.32, C:0.23, G:0.28, T:0.17
Consensus pattern (17 bp):
GGTCAACAGTCAACGGC
Done.