genome.fa.s8725.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008725.1 Hibiscus syriacus cultivar Beakdansim tig00111787_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33097

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--63	18	3.4	18	80	10	65	44	25	19	11	1.83
59--228	19	9.1	19	82	10	181	13	21	21	42	1.87
59--228	39	4.5	37	77	14	170	13	21	21	42	1.87
2266--2332	21	3.2	21	66	6	55	23	35	20	19	1.95
3679--3714	14	2.6	14	95	0	63	30	0	25	44	1.54
3893--4010	19	6.7	19	66	19	76	13	23	20	42	1.88
3897--3990	33	2.8	33	98	0	179	12	24	19	43	1.85
7652--7688	14	2.6	14	86	0	56	48	21	0	29	1.50
9548--9666	19	6.9	18	72	21	94	43	23	21	11	1.85
9605--9661	14	3.9	13	77	22	60	49	24	17	8	1.75
9589--9666	32	2.4	32	93	4	131	47	23	19	10	1.79
9673--9768	19	5.6	17	72	21	78	11	19	22	45	1.82
9695--9752	14	3.9	14	79	16	71	8	17	25	48	1.75
9678--9768	32	2.8	33	94	3	166	10	18	23	47	1.80
9753--9807	20	2.8	19	83	8	65	16	23	23	36	1.94
10280--10324	18	2.5	18	85	0	63	15	15	42	26	1.87
11641--11685	20	2.2	20	88	0	63	51	20	17	11	1.75
11929--11972	22	2.0	22	95	0	79	18	15	45	20	1.85
12160--12253	20	4.7	20	80	2	89	23	18	24	34	1.96
12140--12254	20	5.7	20	78	5	88	23	17	23	35	1.95
12182--12316	41	3.3	41	81	4	130	20	21	20	37	1.94
12243--12335	20	4.6	20	78	4	96	18	24	18	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12243--12338	41	2.3	41	98	0	183	18	23	17	39	1.92
16929--16973	23	2.0	23	95	0	81	28	11	11	48	1.73
17856--17948	21	4.6	20	78	4	96	38	18	24	18	1.92
17853--17948	41	2.3	41	98	0	183	39	17	23	18	1.92
17856--17948	20	4.6	20	78	4	96	38	18	24	18	1.92
17934--17984	20	2.5	20	77	3	57	45	19	15	19	1.86
17979--18030	20	2.6	21	85	11	74	30	28	15	25	1.96
17934--18011	41	1.9	41	83	0	102	41	21	15	21	1.90
18532--18596	19	3.4	19	84	2	76	44	26	18	10	1.82
18592--18762	39	4.6	38	77	10	163	12	21	22	43	1.86
18592--18762	19	9.1	19	83	10	190	12	21	22	43	1.86
20762--20884	42	2.9	42	80	2	122	22	36	17	22	1.95
20818--20884	21	3.2	21	66	6	55	23	35	20	19	1.95
22239--22274	14	2.6	14	95	0	63	30	0	25	44	1.54
22453--22570	19	6.7	19	65	19	67	14	23	19	42	1.88
22457--22550	33	2.8	33	96	0	170	13	24	18	43	1.86
24846--24870	12	2.1	12	100	0	50	0	28	0	72	0.86
25044--25103	24	2.5	24	83	0	75	35	21	16	26	1.95
26234--26270	14	2.6	14	86	0	56	48	21	0	29	1.50
28138--28204	19	3.5	19	83	4	89	37	23	23	14	1.93
28193--28250	14	3.9	14	79	16	71	48	25	17	8	1.75
28177--28255	32	2.4	33	95	2	142	46	24	18	10	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28262--28382	19	6.6	19	77	12	92	14	20	22	42	1.87
28855--28899	18	2.5	18	85	0	63	15	15	42	26	1.87
30210--30247	20	1.9	20	88	0	58	50	21	15	13	1.78
30511--30554	22	2.0	22	95	0	79	18	15	45	20	1.85
30742--30835	20	4.7	20	80	2	89	23	18	24	34	1.96
30722--30836	20	5.7	20	78	5	88	23	17	23	35	1.95
30764--30898	41	3.3	41	81	4	130	20	21	20	37	1.94
30825--30917	20	4.6	20	78	4	96	18	24	18	38	1.92
30825--30920	41	2.3	41	98	0	183	18	23	17	39	1.92
31590--31682	21	4.6	20	78	4	96	38	18	24	18	1.92
31587--31682	41	2.3	41	98	0	183	39	17	23	18	1.92
31590--31682	20	4.6	20	78	4	96	38	18	24	18	1.92
31713--31759	19	2.4	20	85	7	69	29	29	14	25	1.95
31672--31763	20	4.6	20	77	5	78	34	25	16	23	1.95
32272--32336	19	3.4	19	84	2	76	44	26	18	10	1.82
32332--32501	19	9.1	19	82	10	181	12	21	22	42	1.87
32332--32501	39	4.5	37	77	14	170	12	21	22	42	1.87

Tables:   1

The End!