genome.fa.s8728.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008728.1 Hibiscus syriacus cultivar Beakdansim tig00111795_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  149072

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23--68	18	2.3	19	82	17	58	63	4	0	32	1.14
7--71	35	2.0	34	82	11	82	63	3	0	33	1.10
455--555	34	2.9	35	84	11	143	28	14	12	43	1.83
1095--2126	105	10.0	105	92	3	1608	22	17	26	33	1.96
1095--2126	310	3.3	313	91	3	1595	22	17	26	33	1.96
1094--2126	415	2.5	418	91	3	1631	22	17	26	33	1.96
2754--2911	68	2.4	65	85	4	208	35	9	22	32	1.87
2755--3145	65	5.7	67	72	13	214	39	11	20	28	1.88
2887--3165	36	8.0	35	77	12	254	40	13	20	25	1.89
2826--3146	137	2.4	136	84	3	421	39	13	20	26	1.89
2923--3109	101	1.9	101	86	4	270	40	13	19	26	1.88
3023--3161	71	1.9	72	94	1	244	38	14	21	25	1.92
3028--3197	71	2.4	71	88	2	234	39	16	21	22	1.92
4057--4105	22	2.2	22	92	0	80	28	14	24	32	1.94
4069--4112	22	2.0	22	86	0	61	31	13	22	31	1.93
4815--4852	20	1.9	20	88	0	58	26	7	2	63	1.35
4863--4897	16	2.1	18	89	10	56	25	8	0	65	1.21
5469--5568	34	2.8	36	82	10	134	44	13	14	29	1.82
6092--6129	20	1.9	20	88	0	58	26	7	2	63	1.35
6261--6296	2	18.0	2	100	0	72	50	0	0	50	1.00
7202--7279	37	2.1	37	97	0	147	51	3	5	39	1.42
9841--9887	7	6.6	7	76	13	51	19	0	27	53	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9846--9908	22	2.9	22	83	2	83	22	0	25	52	1.47
11564--11606	20	2.2	20	83	4	52	51	0	2	46	1.13
15001--15048	25	1.9	25	95	0	87	20	29	20	29	1.98
17570--17677	21	5.2	21	67	20	84	14	20	25	38	1.91
17563--17684	41	3.0	41	97	0	226	14	19	24	40	1.89
17591--17660	20	3.5	20	70	18	63	12	21	24	41	1.88
17833--18096	41	6.4	41	94	2	435	39	25	20	15	1.91
29374--29424	12	4.2	12	78	9	59	25	15	21	37	1.93
29384--29430	24	2.0	24	91	0	76	25	10	19	44	1.82
31098--31141	2	22.0	2	95	0	79	52	0	0	47	1.00
32185--32217	17	1.9	17	88	11	50	39	12	15	33	1.84
36228--36261	9	3.7	9	88	4	50	11	5	2	79	1.02
41071--41209	52	2.8	50	89	7	205	45	16	24	13	1.84
41191--41239	19	2.5	19	83	3	53	77	4	12	6	1.09
41988--42543	105	5.4	105	91	4	891	33	25	18	22	1.97
42208--42363	43	3.4	43	69	13	132	35	25	17	21	1.95
41988--42501	200	2.5	199	92	3	812	33	25	18	22	1.96
42297--42555	106	2.4	106	92	0	437	35	25	16	21	1.95
54439--54501	2	32.0	2	96	3	119	50	0	0	49	1.00
55490--55707	103	2.1	103	100	0	436	26	13	23	36	1.92
55723--55783	23	2.7	23	89	0	95	19	26	27	26	1.99
60538--60562	2	12.5	2	100	0	50	0	0	48	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65179--65314	60	2.2	60	78	10	143	43	5	20	30	1.75
69661--69709	23	2.1	23	100	0	98	20	38	22	18	1.93
69845--69893	25	2.0	25	91	0	80	51	8	6	34	1.57
71760--72148	195	2.0	194	91	2	638	25	15	12	46	1.82
73013--73045	2	16.5	2	100	0	66	51	0	0	48	1.00
81944--82267	165	2.0	165	83	1	416	21	19	19	38	1.93
84363--84429	34	2.0	34	84	0	89	50	14	11	22	1.76
84369--84466	34	2.9	34	76	0	88	47	14	11	26	1.77
84438--84494	28	2.0	30	86	6	82	43	14	14	28	1.83
84561--84608	26	2.0	23	84	12	60	64	12	6	16	1.46
101145--101194	21	2.4	21	100	0	100	18	4	36	42	1.69
101503--101625	60	2.0	60	83	6	151	32	15	13	39	1.86
102986--103125	71	2.0	71	98	0	271	40	12	19	28	1.87
108412--108516	41	2.5	42	89	1	158	22	20	24	31	1.98
109333--109361	6	5.0	6	95	4	51	0	17	51	31	1.45
109436--109568	42	3.2	42	95	0	230	32	25	19	22	1.97
109429--109549	21	5.8	20	66	16	68	33	23	19	23	1.97
109467--109568	21	4.9	20	66	16	64	30	26	20	22	1.98
118389--118435	13	3.8	12	83	8	58	2	12	2	82	0.84
118389--118435	18	2.5	20	89	6	71	2	12	2	82	0.84
118438--118490	24	2.2	25	96	3	99	16	15	18	49	1.80
130668--130701	16	2.1	16	94	0	59	32	26	8	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136188--136222	16	2.1	17	94	5	63	34	25	8	31	1.86
138302--138342	21	2.0	20	90	4	64	48	0	0	51	1.00
138652--138765	60	1.9	59	80	1	129	30	21	6	41	1.78
141726--141756	14	2.3	13	94	5	53	58	6	6	29	1.48
141826--141876	11	4.4	11	73	22	50	60	1	0	37	1.08
141833--141906	26	2.8	28	84	12	102	54	2	0	43	1.14
142158--142182	13	1.9	13	100	0	50	44	0	0	56	0.99
142237--142268	15	2.2	15	94	5	57	50	0	0	50	1.00
142195--142315	58	2.1	57	87	3	172	49	2	2	45	1.28
142294--142355	21	3.0	21	79	11	74	45	0	1	53	1.10
143861--143927	31	2.2	31	88	0	98	41	5	10	41	1.64
144859--144950	39	2.4	39	78	12	109	50	1	14	34	1.50
145943--145985	16	2.8	15	82	6	59	67	2	2	27	1.15
147972--147999	2	14.0	2	100	0	56	50	0	0	50	1.00
148500--148546	16	2.9	16	69	12	51	10	19	27	42	1.84

Tables:   1

The End!