genome.fa.s8729.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008729.1 Hibiscus syriacus cultivar Beakdansim tig00111798_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  244119

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2330--2363	16	2.1	16	94	0	59	32	26	8	32	1.87
2787--2853	21	3.5	21	67	23	65	46	17	4	31	1.68
4417--4459	21	2.0	22	90	4	70	46	0	0	53	1.00
4767--4880	60	1.9	59	80	1	129	30	21	6	41	1.78
7833--7863	14	2.3	13	94	5	53	58	6	6	29	1.48
7948--8019	26	2.8	26	83	10	94	52	2	0	44	1.15
8270--8294	13	1.9	13	100	0	50	44	0	0	56	0.99
8347--8378	15	2.2	15	94	5	57	50	0	0	50	1.00
8404--8465	21	3.0	21	79	11	74	45	0	1	53	1.10
9952--10015	31	2.2	28	83	8	74	40	6	10	42	1.65
10936--11027	39	2.4	39	78	12	109	50	1	14	34	1.50
12023--12064	16	2.8	15	82	10	59	66	2	2	28	1.16
14078--14103	2	13.0	2	100	0	52	50	0	0	50	1.00
14608--14654	16	2.9	16	69	12	51	10	19	27	42	1.84
16687--16721	16	2.2	16	89	0	52	51	0	42	5	1.25
25258--25318	23	2.7	23	75	10	61	14	18	18	49	1.80
35167--35217	26	2.0	26	88	7	77	33	3	1	60	1.26
35383--35672	36	7.9	37	74	13	199	44	3	5	45	1.44
35409--35563	73	2.1	73	84	9	208	43	2	7	46	1.46
35562--35622	29	2.1	29	87	6	88	47	3	1	47	1.28
35748--35777	15	1.9	16	93	6	53	23	3	0	73	0.98
36940--37004	25	2.6	25	74	13	62	23	7	0	69	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36989--37057	27	2.5	28	80	11	81	20	5	0	73	1.03
36992--37056	33	2.1	33	86	13	93	21	4	0	73	1.00
38772--38816	19	2.4	19	92	3	74	11	13	8	66	1.44
42164--43173	165	6.1	164	84	4	1190	29	25	21	23	1.99
42151--43131	250	4.0	245	87	3	1372	28	25	21	24	1.99
42151--43177	495	2.1	496	90	2	1614	29	25	21	23	1.99
43783--44072	36	7.9	37	74	13	199	44	4	5	45	1.46
43809--43963	73	2.1	73	84	9	208	43	2	7	46	1.46
43795--44078	35	7.8	35	73	17	177	43	4	5	46	1.46
43871--44089	110	2.0	109	80	11	241	43	4	5	46	1.47
44146--44175	15	1.9	16	93	6	53	23	3	0	73	0.98
45336--45400	25	2.6	25	74	13	62	23	7	0	69	1.14
45386--45454	11	6.6	11	72	20	51	21	4	0	73	1.00
46261--46320	12	5.3	12	75	15	65	28	0	23	48	1.51
46258--46319	20	3.5	20	68	32	68	30	0	20	48	1.50
46261--46324	32	2.0	32	100	0	128	28	0	25	46	1.53
46491--46590	2	50.5	2	97	2	193	51	0	0	49	1.00
46925--46989	30	2.1	31	85	2	87	46	0	0	53	1.00
46925--47021	31	3.3	31	81	5	94	42	0	0	57	0.98
46951--47007	16	3.6	16	78	4	62	43	0	0	56	0.99
53723--53806	42	2.0	42	90	0	132	38	9	5	46	1.61
53783--53809	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55405--55465	2	30.5	2	100	0	122	50	0	0	49	1.00
66847--66871	6	4.2	6	100	0	50	16	0	0	84	0.63
69674--69732	31	1.9	31	89	0	91	23	15	16	44	1.86
83185--83229	21	2.1	21	83	0	54	33	20	6	40	1.78
83738--83867	59	2.2	59	86	5	174	32	14	17	35	1.90
92404--92438	6	5.7	6	96	3	61	0	45	0	54	0.99
95104--95205	39	2.6	39	95	0	177	59	10	6	22	1.54
95144--95205	17	3.4	17	70	20	52	62	11	4	20	1.46
99225--99338	51	2.2	51	92	0	183	36	12	4	46	1.61
102976--103019	2	22.0	2	80	0	52	40	0	6	52	1.28
102985--103024	20	2.0	20	90	0	62	35	0	12	52	1.39
103675--103699	2	12.5	2	100	0	50	48	0	0	52	1.00
105472--105888	204	2.0	207	90	4	662	24	12	19	43	1.86
109829--109934	52	2.0	52	92	0	176	37	13	31	17	1.88
116384--116443	30	2.0	31	93	3	104	45	16	1	36	1.58
116595--116666	35	2.1	35	97	0	135	51	8	2	37	1.47
117177--117216	19	2.1	19	100	0	80	10	42	30	17	1.82
128081--128150	36	1.9	36	91	0	113	22	20	20	37	1.95
128884--128970	32	2.6	34	71	16	90	28	10	3	57	1.48
135775--135833	31	1.9	31	89	6	93	44	3	5	47	1.42
135858--136106	22	11.3	22	86	1	329	46	9	0	42	1.39
136469--136498	3	10.0	3	100	0	60	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142213--142245	16	1.9	18	88	11	52	21	3	3	72	1.11
148839--148926	38	2.4	35	83	9	113	32	10	4	52	1.56
149359--149395	2	18.5	2	100	0	74	48	0	0	51	1.00
165069--165094	2	13.0	2	100	0	52	50	0	0	50	1.00
180302--180345	21	2.1	21	86	0	61	38	11	29	20	1.87
180622--180653	5	6.2	5	92	7	55	59	3	0	37	1.13
191631--191655	4	6.2	4	100	0	50	48	0	0	52	1.00
200054--200101	2	24.0	2	100	0	96	50	0	0	50	1.00
200203--200306	52	2.0	52	96	0	190	21	18	28	31	1.96
201235--201312	29	2.6	31	76	17	92	17	21	3	56	1.57
214019--214051	15	2.1	16	88	5	50	9	24	15	51	1.72
214801--214834	16	2.1	16	94	0	59	32	26	8	32	1.87
218778--218835	27	2.1	27	81	6	64	36	0	1	62	1.06
220524--220557	17	2.0	17	88	0	50	47	0	8	44	1.34
235995--236040	23	2.0	23	86	4	65	76	4	0	19	0.96

Tables:   1

The End!