Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000873.1 Hibiscus syriacus cultivar Beakdansim tig00001687_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  169192

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10627--10691
34
1.9
34
87
0
94
33
1
21
43
1.62
12115--12158
2
22.0
2
100
0
88
50
0
0
50
1.00
14448--14537
2
50.5
2
71
22
67
55
0
0
44
0.99
14446--14521
31
2.5
31
100
0
152
57
0
0
42
0.98
16316--16353
20
1.9
20
88
0
58
21
26
10
42
1.85
23332--23376
24
1.9
23
86
13
65
73
0
6
20
1.05
23828--23852
13
1.9
13
100
0
50
80
0
8
12
0.92
34927--34951
12
2.1
12
100
0
50
48
28
8
16
1.74
37978--38020
21
2.0
21
100
0
86
25
0
41
32
1.56
39450--39522
32
2.3
32
92
0
119
28
19
17
34
1.95
40917--40943
7
3.9
7
100
0
54
88
0
11
0
0.50
42555--42595
21
2.0
21
85
0
55
39
17
2
41
1.62
44003--44068
31
2.1
31
88
5
98
15
16
18
50
1.79
63280--63455
60
3.0
61
75
12
177
43
5
19
31
1.74
65433--65848
205
2.0
208
88
1
613
34
21
9
33
1.86
67209--67251
2
21.5
2
100
0
86
48
0
0
51
1.00
73113--73157
23
2.0
23
86
0
63
22
20
8
48
1.76
73592--73629
18
2.2
17
95
4
67
21
5
15
57
1.57
78973--79014
20
2.1
20
90
0
66
14
28
19
38
1.90
79355--79385
2
15.5
2
100
0
62
51
0
0
48
1.00
83556--83614
24
2.4
24
77
5
64
62
0
27
10
1.27
86888--86929
22
2.0
21
90
4
66
26
23
26
23
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
89639--89773
44
3.1
44
92
0
234
37
11
15
35
1.84
90371--90413
18
2.4
18
100
0
86
18
18
20
41
1.90
92664--92739
36
2.1
36
97
0
143
31
10
14
43
1.79
93161--93190
15
2.0
15
100
0
60
13
26
46
13
1.80
97667--97742
36
2.1
36
97
0
143
31
10
14
43
1.79
105143--105212
35
2.0
35
83
10
90
50
4
0
45
1.21
105996--106052
29
1.9
30
82
3
71
33
3
5
57
1.38
106171--106280
40
2.8
40
95
0
193
21
14
11
51
1.74
110204--110234
2
16.0
2
93
6
55
48
0
0
51
1.00
112014--112050
19
1.9
19
94
0
65
40
18
16
24
1.90
118760--118789
15
2.0
15
93
0
51
16
26
16
40
1.90
121074--121112
3
13.0
3
100
0
78
66
0
33
0
0.92
132953--133021
30
2.3
29
85
2
84
46
1
11
40
1.49
138479--138523
23
1.9
23
86
13
65
46
13
15
24
1.82
140265--140672
204
2.0
204
100
0
816
31
20
19
28
1.96
146655--146680
2
13.0
2
100
0
52
50
0
0
50
1.00
152109--152215
23
4.7
23
80
4
101
41
14
16
28
1.87
154192--154234
20
2.2
20
91
0
68
32
18
11
37
1.87
160390--161131
374
2.0
366
95
2
1324
36
17
13
33
1.88
161694--161807
59
1.9
59
80
7
133
31
26
6
35
1.81
162027--162123
32
3.2
30
75
7
97
39
7
12
41
1.70

Tables:   1

The End!