genome.fa.s8732.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008732.1 Hibiscus syriacus cultivar Beakdansim tig00111802_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47988

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3735--3776	19	2.3	18	84	12	50	26	0	9	64	1.24
4463--4708	131	1.9	131	88	2	370	41	14	10	33	1.80
4488--4799	130	2.4	131	82	5	371	40	15	10	33	1.81
6869--7093	21	10.6	22	78	11	165	21	19	20	38	1.93
6875--7101	42	5.4	41	84	7	212	22	18	20	37	1.94
6884--7093	107	2.0	107	95	0	375	21	19	20	39	1.93
7186--7246	6	10.5	6	96	1	99	31	52	14	1	1.52
7247--7279	5	6.6	5	92	0	57	39	18	39	3	1.66
7770--7817	6	8.5	6	97	2	75	0	16	54	29	1.43
7934--8070	21	6.6	21	82	8	163	22	22	24	30	1.99
7910--8033	62	2.0	62	98	0	239	24	21	20	33	1.97
7914--8050	62	2.2	62	93	0	229	24	22	21	32	1.98
10062--10133	2	36.0	2	100	0	144	50	0	0	50	1.00
10816--10868	21	2.5	21	71	0	52	20	16	33	28	1.95
11251--11308	30	2.0	30	83	10	75	43	8	0	48	1.34
12571--12667	37	2.6	36	79	9	90	40	3	6	50	1.43
12584--12667	37	2.3	37	82	8	102	40	2	4	52	1.35
12665--12702	3	12.3	3	84	15	51	28	2	0	68	1.03
17190--17380	96	2.0	96	86	4	269	35	18	16	29	1.93
18889--18950	21	3.2	21	70	25	73	27	19	11	41	1.85
18856--19041	36	5.2	36	90	3	286	28	20	13	36	1.92
18856--19242	70	5.6	71	76	11	372	27	20	13	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19025--19099	29	2.6	29	97	0	141	32	18	10	38	1.85
19085--19242	73	2.2	71	83	8	194	25	20	13	39	1.89
19083--19242	36	4.4	36	84	3	196	25	20	13	40	1.90
19225--19257	15	2.2	15	100	0	66	30	27	12	30	1.92
19385--19449	21	3.4	21	68	24	70	24	21	12	41	1.87
19273--19472	36	5.5	37	91	1	271	24	20	14	41	1.89
19348--19589	124	1.9	125	92	0	405	23	18	14	43	1.86
19399--19564	88	1.9	86	88	2	251	24	17	13	43	1.85
19472--19576	36	2.9	36	85	2	129	23	15	14	46	1.82
19567--19604	15	2.5	15	95	0	67	18	18	13	50	1.78
19677--19749	30	2.4	30	83	2	92	45	13	9	31	1.76
20412--20494	27	3.0	27	81	15	107	39	0	8	51	1.32
20500--20548	3	15.7	3	79	8	53	36	0	2	61	1.08
20490--20540	19	2.7	19	78	6	59	41	0	1	56	1.10
28728--28774	2	23.5	2	100	0	94	51	0	0	48	1.00
29789--29861	3	24.3	3	94	0	128	34	2	0	63	1.09
29860--29894	14	2.4	15	95	4	63	62	0	0	37	0.95
42629--42666	12	3.3	12	89	7	53	89	0	10	0	0.49
42626--42666	10	4.0	10	96	3	73	87	0	12	0	0.53
42977--43021	16	2.8	16	83	10	56	28	8	6	55	1.56
43801--44515	83	8.7	83	91	3	1133	27	13	22	36	1.92
43801--44514	247	2.9	248	92	2	1181	27	13	22	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45198--45243	24	1.9	24	82	8	58	52	8	23	15	1.70
45158--45794	111	5.6	113	90	5	839	37	13	20	29	1.90
45928--46049	3	39.3	3	87	8	165	36	1	0	61	1.06

Tables:   1

The End!