Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008736.1 Hibiscus syriacus cultivar Beakdansim tig00111810_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2478687
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 8 of 13
Found at i:1306440 original size:17 final size:17
Alignment explanation
Indices: 1306418--1306461 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
1306408 ATCTTCCTCA
1306418 TAAGCTTCTCATTGGAG
1 TAAGCTTCTCATTGGAG
1306435 TAAGCTTCTCATTGGAG
1 TAAGCTTCTCATTGGAG
1306452 -ATAGCTTCTC
1 TA-AGCTTCTC
1306462 CAAATCCTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 1 0.04
17 25 0.96
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.36
Consensus pattern (17 bp):
TAAGCTTCTCATTGGAG
Found at i:1307603 original size:20 final size:21
Alignment explanation
Indices: 1307573--1307612 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
1307563 AGTCATTGTG
1307573 GCCTGATGGTATCAATACTAT
1 GCCTGATGGTATCAATACTAT
*
1307594 GCCT-ATGGTATCGATACTA
1 GCCTGATGGTATCAATACTA
1307613 CTATAAAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33
Consensus pattern (21 bp):
GCCTGATGGTATCAATACTAT
Found at i:1314368 original size:368 final size:361
Alignment explanation
Indices: 1313695--1314423 Score: 948
Period size: 368 Copynumber: 2.0 Consensus size: 361
1313685 CATATTGCAA
* *
1313695 ACATGAAATCATAGCATATGACCTTTTTGAATAGAATTTTAAAGATTTATCTCGTTATTGAATCA
1 ACATGAAATCATAGCATATGACCTTTTTGAAAAGAATTTTAAAGATTTATCTCGTTATTGAATAA
* * * * *
1313760 ATCATTTCCAACCATGACTAGATCTCCTCGATGAGAAGGATCAATGTCATCATTAGATTTGACAC
66 ATCATTTCCAACCATGACTAGATCTCATCGACGAGAAAGAGCAACGTCATCATTAGATTTGACAC
** * * ** *
1313825 CAATCAATGATTATCTCTCCTCAAGATGAAGGTGCAATGCCGTTGTCAATGGTAAGATACCTCGA
131 CAAGAAATGATTAACTCTCCTCAACATGAAGGAACAATGCCG-TGTCAATGGCAAGATACCTCGA
* * * * * * *
1313890 GGCATTCAGATTTTCTTAACGCAAAGGAACAATATAGTATCAGATATTCCATCGTTCGAATACGA
195 GGCAGTCAGATTTCCTCAACGCAAAGGAAAAATATAGTATCAGATATACCATAGCTCGAATACGA
* * *
1313955 AAAAACGTCCTCAACATGAAGGAACAAAGTCATCTTCAGAATTCAAATTCATGGGTGAAGGATCC
260 AAAAACGCCCTCAACATGAAGGAACAAAGTCATCTTCAAAATTCAAATTCATGGATGAAGGATCC
* * *
1314020 AATTCCTAATTTATTTCTGTAAATGCCAAAGTTGGAC
325 AATTCCCAATTTATTTCAGCAAATGCCAAAGTTGGAC
1314057 ACATGAAATCATAGCATATGACCTTTTTGAACAAG-ATTTTAAATG-TTTATCTCGTTATTGAGA
1 ACATGAAATCATAGCATATGACCTTTTTGAA-AAGAATTTTAAA-GATTTATCTCGTTATT--G-
*
1314120 TAATAAATCAATCATTCGCAACCATGATTAGATCTCATC-AGCGAGAAAGAGCAACGTCATCATT
61 -AATAAATC-AT--TTC-CAACCATGACTAGATCTCATCGA-CGAGAAAGAGCAACGTCATCATT
*
1314184 AGATTTGACA-CATAGAAATGATTAACTCTCCTCAACA-GAAGGAATAATGCAC-TGTCAATGGC
120 AGATTTGACACCA-AGAAATGATTAACTCTCCTCAACATGAAGGAACAATGC-CGTGTCAATGGC
* * *
1314246 AAGATACCTCGAGGCAGTCAGATTTCCTCAATGCAAAGGAAAAATATTGTCTCAGATATACCATA
183 AAGATACCTCGAGGCAGTCAGATTTCCTCAACGCAAAGGAAAAATATAGTATCAGATATACCATA
* ** * *
1314311 GCTCGAATTCGACTAAACGCCCTCAACATGAAGGAACAATGTCGTCTTCAAAATTCAAATTCATG
248 GCTCGAATACGAAAAAACGCCCTCAACATGAAGGAACAAAGTCATCTTCAAAATTCAAATTCATG
*
1314376 GATGAAGGATTCAATTCCCAATTTATTTCAGCAAATGCCAAAGTTGGA
313 GATGAAGGATCCAATTCCCAATTTATTTCAGCAAATGCCAAAGTTGGA
1314424 AAAAATATGT
Statistics
Matches: 316, Mismatches: 38, Indels: 20
0.84 0.10 0.05
Matches are distributed among these distances:
362 53 0.17
363 3 0.01
364 1 0.00
366 7 0.02
367 2 0.01
368 165 0.52
369 16 0.05
370 69 0.22
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (361 bp):
ACATGAAATCATAGCATATGACCTTTTTGAAAAGAATTTTAAAGATTTATCTCGTTATTGAATAA
ATCATTTCCAACCATGACTAGATCTCATCGACGAGAAAGAGCAACGTCATCATTAGATTTGACAC
CAAGAAATGATTAACTCTCCTCAACATGAAGGAACAATGCCGTGTCAATGGCAAGATACCTCGAG
GCAGTCAGATTTCCTCAACGCAAAGGAAAAATATAGTATCAGATATACCATAGCTCGAATACGAA
AAAACGCCCTCAACATGAAGGAACAAAGTCATCTTCAAAATTCAAATTCATGGATGAAGGATCCA
ATTCCCAATTTATTTCAGCAAATGCCAAAGTTGGAC
Found at i:1314572 original size:22 final size:21
Alignment explanation
Indices: 1314540--1314583 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 21
1314530 TAATGTTAAT
1314540 TATTTGTATTAATTTA-GTTTG
1 TATTTGTATTAA-TTAGGTTTG
1314561 TATTATGTATTAATTAGGTTTG
1 TATT-TGTATTAATTAGGTTTG
1314583 T
1 T
1314584 TAATTATCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.25, C:0.00, G:0.16, T:0.59
Consensus pattern (21 bp):
TATTTGTATTAATTAGGTTTG
Found at i:1316283 original size:2 final size:2
Alignment explanation
Indices: 1316276--1316306 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
1316266 TCATAGTTTC
1316276 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1316307 AAGGTATGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1319622 original size:90 final size:90
Alignment explanation
Indices: 1319514--1319686 Score: 294
Period size: 90 Copynumber: 1.9 Consensus size: 90
1319504 CCGAATATAT
* *
1319514 AATTTTAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTAATATGATTAGGG
1 AATTCTAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGATTAGGG
1319579 TAACCTT-GATATAAAAGGATTATTA
66 TAA-CTTGGATATAAAAGGATTATTA
*
1319604 AATTCTAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTATTATGATTAGGG
1 AATTCTAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGATTAGGG
*
1319669 TAACTTGGCTATAAAAGG
66 TAACTTGGATATAAAAGG
1319687 GTGTGTTAGG
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
89 3 0.04
90 75 0.96
ACGTcount: A:0.45, C:0.06, G:0.11, T:0.38
Consensus pattern (90 bp):
AATTCTAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGATTAGGG
TAACTTGGATATAAAAGGATTATTA
Found at i:1333426 original size:25 final size:23
Alignment explanation
Indices: 1333396--1333442 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
1333386 AAAAAACTTA
1333396 AAATTAATATAAAAGAAATAAAAAC
1 AAATT-ATATAAAA-AAATAAAAAC
* *
1333421 AAATTATTTAAAAATATAAAAA
1 AAATTATATAAAAAAATAAAAA
1333443 AATAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 7 0.35
25 5 0.25
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (23 bp):
AAATTATATAAAAAAATAAAAAC
Found at i:1334010 original size:21 final size:22
Alignment explanation
Indices: 1333962--1334013 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 22
1333952 ATTTGTAAAT
* *
1333962 ATTAAATTTAAAAAATATATTC
1 ATTAATTTTCAAAAATATATTC
*
1333984 A-AAATTTTCAAAAA-ATATTC
1 ATTAATTTTCAAAAATATATTC
1334004 ATTAATTTTC
1 ATTAATTTTC
1334014 TTAATGAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
20 7 0.28
21 17 0.68
22 1 0.04
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (22 bp):
ATTAATTTTCAAAAATATATTC
Found at i:1334227 original size:26 final size:26
Alignment explanation
Indices: 1334198--1334251 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
1334188 TATAAATAGT
* *
1334198 TAATCAAATCAGTTTCTCAAATTAAC
1 TAATCAAATCAGTTGCTCAAATCAAC
* *
1334224 TAATTAAATCAGTTGGTCAAATCAAC
1 TAATCAAATCAGTTGCTCAAATCAAC
1334250 TA
1 TA
1334252 CCAGCTATCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (26 bp):
TAATCAAATCAGTTGCTCAAATCAAC
Found at i:1342017 original size:2 final size:2
Alignment explanation
Indices: 1342010--1342034 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1342000 AAATCTGAGA
1342010 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
1342035 CTTGAAAGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1348282 original size:231 final size:229
Alignment explanation
Indices: 1347787--1348269 Score: 723
Period size: 231 Copynumber: 2.1 Consensus size: 229
1347777 ATTTCTACAA
* * *
1347787 TAAATAACCTCTAAAAAGTAGTTAAAACGGTGCATTAATTGAGCACAAAAAGTAGTTAAAGCAAT
1 TAAATAACCTATGAAAAGTAGTTAAAACGGTGCATTAATTGAGCACAAAAAGTAGCTAAAGCAAT
* * *
1347852 GAATAATTTGGCCTGGTTAATATACACAATTTTTATGATTTGAAGTGACAATTCAACATTGAAAA
66 GAATAATTTGGCCTGATTAAAATACACAATTTTTATGATTTGAAGTGACAATTCAACACTGAAAA
* *
1347917 GTTTTCTGATTTGAGTTGATATATCGCTGAGAAGTTGTAGAAAATGATAATGCAACACTATTTTC
131 GTTTTCTGATTTGAGTTGATATATCACTGAGAAGTTGCAGAAAATGATAATGCAACACTATTTTC
* * * *
1347982 ACCTATTTTCTTAACAGTTGCTTCAATTATGCAT
196 ACCCAATTTCTGAACAATTGCTTCAATTATGCAT
* * * * *
1348016 TAAATGACCTATGAAAAGTAGCTAAAACGGTGCATTAATTGAGCACCGAAAAGTAGCTGAAGCAG
1 TAAATAACCTATGAAAAGTAGTTAAAACGGTGCATTAATTGAGCA-CAAAAAGTAGCTAAAGCAA
*** *
1348081 TGAATAATTTGGCCTGATTAAAATACATGTTTTTTTATGATTTGAAGTGACAATTTAACACTGAA
65 TGAATAATTTGGCCTGATTAAAATACA-CAATTTTTATGATTTGAAGTGACAATTCAACACTGAA
* *
1348146 AAGTTTTCTGATTTGAGTTGATATATCACTGAGAAGTTGCAGAAAATGATAATGTAGCACTATTT
129 AAGTTTTCTGATTTGAGTTGATATATCACTGAGAAGTTGCAGAAAATGATAATGCAACACTATTT
*
1348211 TCACCCAATTTCTGAACAATTGCTTTAATTATGCAT
194 TCACCCAATTTCTGAACAATTGCTTCAATTATGCAT
*
1348247 TAAATAACCTTTGAAAAGTAGTT
1 TAAATAACCTATGAAAAGTAGTT
1348270 GAAATAGTGC
Statistics
Matches: 225, Mismatches: 27, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
229 41 0.18
230 40 0.18
231 144 0.64
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.34
Consensus pattern (229 bp):
TAAATAACCTATGAAAAGTAGTTAAAACGGTGCATTAATTGAGCACAAAAAGTAGCTAAAGCAAT
GAATAATTTGGCCTGATTAAAATACACAATTTTTATGATTTGAAGTGACAATTCAACACTGAAAA
GTTTTCTGATTTGAGTTGATATATCACTGAGAAGTTGCAGAAAATGATAATGCAACACTATTTTC
ACCCAATTTCTGAACAATTGCTTCAATTATGCAT
Found at i:1349275 original size:20 final size:20
Alignment explanation
Indices: 1349233--1349297 Score: 60
Period size: 20 Copynumber: 3.1 Consensus size: 20
1349223 AGAAAAAAAT
* *
1349233 AAATAAATAAAAAATT-GGGA
1 AAATAAA-AAAAAATTAAGAA
1349253 AAATAAAAAAAAATTAAGAA
1 AAATAAAAAAAAATTAAGAA
*
1349273 AAATAATAAAACAAAATACAGAA
1 AAATAA-AAAA-AAATTA-AGAA
1349296 AA
1 AA
1349298 TGTTCAATCT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
19 8 0.21
20 15 0.39
21 4 0.11
22 5 0.13
23 6 0.16
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.15
Consensus pattern (20 bp):
AAATAAAAAAAAATTAAGAA
Found at i:1349288 original size:23 final size:23
Alignment explanation
Indices: 1349254--1349297 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
1349244 AAATTGGGAA
1349254 AATAAAAAAAAATTA-AGAAAAAT
1 AATAAAAAAAAA-TACAGAAAAAT
*
1349277 AATAAAACAAAATACAGAAAA
1 AATAAAAAAAAATACAGAAAA
1349298 TGTTCAATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.77, C:0.05, G:0.05, T:0.14
Consensus pattern (23 bp):
AATAAAAAAAAATACAGAAAAAT
Found at i:1349346 original size:13 final size:14
Alignment explanation
Indices: 1349310--1349348 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
1349300 TTCAATCTTG
1349310 AAAATA-ATAAAAT
1 AAAATATATAAAAT
1349323 AAAATAGTATAAAAT
1 AAAATA-TATAAAAT
1349338 AAATATATATA
1 AAA-ATATATA
1349349 TATATATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 6 0.26
15 14 0.61
16 3 0.13
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (14 bp):
AAAATATATAAAAT
Found at i:1350667 original size:20 final size:19
Alignment explanation
Indices: 1350629--1350684 Score: 80
Period size: 20 Copynumber: 3.0 Consensus size: 19
1350619 AAAAATAAAT
1350629 AAATAAATAATA-ATAATA
1 AAATAAATAATATATAATA
*
1350647 AAATTAATAATATATTAATA
1 AAATAAATAATATA-TAATA
1350667 AAATAAATAATAT-TAATA
1 AAATAAATAATATATAATA
1350685 TAAAAATCAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
18 16 0.47
19 1 0.03
20 17 0.50
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
AAATAAATAATATATAATA
Found at i:1350681 original size:18 final size:18
Alignment explanation
Indices: 1350614--1350684 Score: 78
Period size: 18 Copynumber: 4.1 Consensus size: 18
1350604 ACCTAAAACG
1350614 AAAATAAA-AATA--AAT
1 AAAATAAATAATATTAAT
*
1350629 -AAATAAATAATAATAAT
1 AAAATAAATAATATTAAT
*
1350646 AAAATTAATAATATATTAAT
1 AAAATAAAT-A-ATATTAAT
1350666 AAAATAAATAATATTAAT
1 AAAATAAATAATATTAAT
1350684 A
1 A
1350685 TAAAAATCAT
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
14 7 0.15
15 4 0.09
17 3 0.06
18 16 0.34
19 2 0.04
20 15 0.32
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
AAAATAAATAATATTAAT
Found at i:1350687 original size:20 final size:20
Alignment explanation
Indices: 1350625--1350689 Score: 78
Period size: 20 Copynumber: 3.1 Consensus size: 20
1350615 AAATAAAAAT
1350625 AAATAAATAAATAATAATAATA
1 AAATAAAT-AAT-ATAATAATA
* *
1350647 AAATTAATAATATATTAATA
1 AAATAAATAATATAATAATA
1350667 AAATAAATAATATTAAT-ATA
1 AAATAAATAATA-TAATAATA
1350687 AAA
1 AAA
1350690 ATCATTTTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
20 25 0.66
21 6 0.16
22 7 0.18
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (20 bp):
AAATAAATAATATAATAATA
Found at i:1350728 original size:38 final size:39
Alignment explanation
Indices: 1350685--1350801 Score: 112
Period size: 38 Copynumber: 2.8 Consensus size: 39
1350675 AATATTAATA
*
1350685 TAAAAATCATTTTTAAAACTATATATTATATATGCT-T-T
1 TAAAAATCATTTTTAAAACTATATATTATATAT-ATATAT
* *
1350723 TAAAAATTATTTTCAAAACCATATAATATATGTATATATATATAT
1 TAAAAATCATTTTTAAAA-C---T-ATATAT-TATATATATATAT
*
1350768 TCAAAAATCATTTTTAAAACTATATAATATATAT
1 T-AAAAATCATTTTTAAAACTATATATTATATAT
1350802 TTTCAAAACT
Statistics
Matches: 64, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
38 16 0.25
39 1 0.02
40 7 0.11
41 5 0.08
42 2 0.03
43 7 0.11
44 8 0.12
45 3 0.05
46 15 0.23
ACGTcount: A:0.47, C:0.08, G:0.02, T:0.44
Consensus pattern (39 bp):
TAAAAATCATTTTTAAAACTATATATTATATATATATAT
Found at i:1350804 original size:23 final size:23
Alignment explanation
Indices: 1350777--1350834 Score: 80
Period size: 23 Copynumber: 2.4 Consensus size: 23
1350767 TTCAAAAATC
*
1350777 ATTTTTAAAACTATATAATATAT
1 ATTTTCAAAACTATATAATATAT
*
1350800 ATTTTCAAAACTATATATTATATAC
1 ATTTTCAAAACTATATA--ATATAT
1350825 ATTTTCAAAA
1 ATTTTCAAAA
1350835 AATATTTCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
23 16 0.52
25 15 0.48
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.45
Consensus pattern (23 bp):
ATTTTCAAAACTATATAATATAT
Found at i:1350835 original size:61 final size:62
Alignment explanation
Indices: 1350757--1350873 Score: 166
Period size: 61 Copynumber: 1.9 Consensus size: 62
1350747 AATATATGTA
* **
1350757 TATATATATATTC-AAAAATCATTTTTAAAACTATATA-ATATATATTTTCAAAACTATATAT
1 TATATACATATTCAAAAAAT-ATTTCAAAAACTATATATATATATATTTTCAAAACTATATAT
*
1350818 TATATACATTTTCAAAAAATATTTCAAAAACTATATATTATATATATTTTCAAAAC
1 TATATACATATTCAAAAAATATTTCAAAAACTATATA-TATATATATTTTCAAAAC
1350874 GTTTTCAAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
61 26 0.53
62 6 0.12
63 17 0.35
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.43
Consensus pattern (62 bp):
TATATACATATTCAAAAAATATTTCAAAAACTATATATATATATATTTTCAAAACTATATAT
Found at i:1350880 original size:37 final size:37
Alignment explanation
Indices: 1350801--1350941 Score: 212
Period size: 37 Copynumber: 3.8 Consensus size: 37
1350791 ATAATATATA
*
1350801 TTTTC-AAAACTATATATTATATACATTTTCAAAAAA
1 TTTTCAAAAACTATATATTATATACATTTTCAAAAAG
* *
1350837 TATTTCAAAAACTATATATTATATATATTTTCAAAACG
1 T-TTTCAAAAACTATATATTATATACATTTTCAAAAAG
* *
1350875 TTTTCAAAAACTATATATTATATACGTTTTCAAAATG
1 TTTTCAAAAACTATATATTATATACATTTTCAAAAAG
*
1350912 TTTTCAAAAACTATATATTATATATATTTT
1 TTTTCAAAAACTATATATTATATACATTTT
1350942 TGAATACCAT
Statistics
Matches: 95, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
36 1 0.01
37 65 0.68
38 29 0.31
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.45
Consensus pattern (37 bp):
TTTTCAAAAACTATATATTATATACATTTTCAAAAAG
Found at i:1350929 original size:74 final size:74
Alignment explanation
Indices: 1350801--1350941 Score: 239
Period size: 74 Copynumber: 1.9 Consensus size: 74
1350791 ATAATATATA
1350801 TTTTCAAAACTATATATTATATACATTTTCAAAAAATATTTCAAAAACTATATATTATATATATT
1 TTTTCAAAACTATATATTATATACATTTTCAAAAAATATTTCAAAAACTATATATTATATATATT
1350866 TTCAAAACG
66 TTCAAAACG
* **
1350875 TTTTCAAAAACTATATATTATATACGTTTTCAAAATGT-TTTCAAAAACTATATATTATATATAT
1 TTTTC-AAAACTATATATTATATACATTTTCAAAAAATATTTCAAAAACTATATATTATATATAT
1350939 TTT
65 TTT
1350942 TGAATACCAT
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
74 34 0.54
75 29 0.46
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.45
Consensus pattern (74 bp):
TTTTCAAAACTATATATTATATACATTTTCAAAAAATATTTCAAAAACTATATATTATATATATT
TTCAAAACG
Found at i:1351806 original size:85 final size:85
Alignment explanation
Indices: 1351695--1352129 Score: 552
Period size: 85 Copynumber: 5.1 Consensus size: 85
1351685 TTTTTTTTAT
* * *
1351695 AGATAACCTTTCTCGCCTTGAGCTATGCTGTAAATTTGATATGCCCTTGAGTTGAATGAAATCAA
1 AGATAACCCTTCTCGACTTGAGCTATGCTGTAAATTTGATATGCCCTTGAGCTGAATGAAATCAA
1351760 ACTCGAAGGTTTTTGTTGAC
66 ACTCGAAGGTTTTTGTTGAC
* ** * * *
1351780 ATATAGA-TTTTCTCGACTTAAGCTATGCTGTAAATTTGATATGCCATTGAGCTGAATAAAATCA
1 AGATA-ACCCTTCTCGACTTGAGCTATGCTGTAAATTTGATATGCCCTTGAGCTGAATGAAATCA
1351844 AACTCGAAGGTTTTTGTTGAC
65 AACTCGAAGGTTTTTGTTGAC
* *
1351865 AGATAACCCTTCTCGTCTTGAGCTATGCTGTAAATTTGATATGCCCTTGAGCTGAATGTAATCAA
1 AGATAACCCTTCTCGACTTGAGCTATGCTGTAAATTTGATATGCCCTTGAGCTGAATGAAATCAA
*
1351930 ACTTGAAGG-TTTTGTTGAC
66 ACTCGAAGGTTTTTGTTGAC
* * * * *
1351949 AGATAGCTCTTCTC-ACCTTGAGTTATGCTGTAAATTTGATATGCCCTTGAGCTGAATGTAATCG
1 AGATAACCCTTCTCGA-CTTGAGCTATGCTGTAAATTTGATATGCCCTTGAGCTGAATGAAATCA
* * *
1352013 AACTCAAAGGTTTTTGTCGAT
65 AACTCGAAGGTTTTTGTTGAC
** * * * * * * **
1352034 AGATAACCAGTCTCGCCTTGGGCTATACTATAAATTTGATATGCTCTTGAGCTGAATGGAATTGA
1 AGATAACCCTTCTCGACTTGAGCTATGCTGTAAATTTGATATGCCCTTGAGCTGAATGAAATCAA
*
1352099 ACTCGAAGTTTTTTGTTGAC
66 ACTCGAAGGTTTTTGTTGAC
1352119 AGATAACCCTT
1 AGATAACCCTT
1352130 TTTTCCTTGA
Statistics
Matches: 302, Mismatches: 43, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
84 77 0.25
85 224 0.74
86 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.36
Consensus pattern (85 bp):
AGATAACCCTTCTCGACTTGAGCTATGCTGTAAATTTGATATGCCCTTGAGCTGAATGAAATCAA
ACTCGAAGGTTTTTGTTGAC
Found at i:1352040 original size:169 final size:169
Alignment explanation
Indices: 1351693--1352123 Score: 585
Period size: 169 Copynumber: 2.5 Consensus size: 169
1351683 AGTTTTTTTT
* *
1351693 ATAGATAACCTTTCTCGCCTTGAGCTATGCTGTAAATTTGATATGCCCTTGAGTTGAATGAAATC
1 ATAGATAACCATTCTCGCCTTGAGCTATGCTGTAAATTTGATATGCCCTTGAGCTGAATGAAATC
* *
1351758 AAACTCGAAGGTTTTTGTTGACATATAGATTTTCTCGACTTAAGCTATGCTGTAAATTTGATATG
66 AAACTCGAAGG-TTTTGTTGACAGATAGATCTTCTCGACTTAAGCTATGCTGTAAATTTGATATG
* *
1351823 CCATTGAGCTGAATAAAATCAAACTCGAAGGTTTTTGTTG
130 CCATTGAGCTGAATAAAATCAAACTCAAAGGTTTTTGTCG
* * * *
1351863 ACAGATAACCCTTCTCGTCTTGAGCTATGCTGTAAATTTGATATGCCCTTGAGCTGAATGTAATC
1 ATAGATAACCATTCTCGCCTTGAGCTATGCTGTAAATTTGATATGCCCTTGAGCTGAATGAAATC
* * * *
1351928 AAACTTGAAGGTTTTGTTGACAGATAGCTCTTCTC-ACCTTGAGTTATGCTGTAAATTTGATATG
66 AAACTCGAAGGTTTTGTTGACAGATAGATCTTCTCGA-CTTAAGCTATGCTGTAAATTTGATATG
* ** *
1351992 CCCTTGAGCTGAATGTAATCGAACTCAAAGGTTTTTGTCG
130 CCATTGAGCTGAATAAAATCAAACTCAAAGGTTTTTGTCG
* * * * * * *
1352032 ATAGATAACCAGTCTCGCCTTGGGCTATACTATAAATTTGATATGCTCTTGAGCTGAATGGAATT
1 ATAGATAACCATTCTCGCCTTGAGCTATGCTGTAAATTTGATATGCCCTTGAGCTGAATGAAATC
* *
1352097 GAACTCGAAGTTTTTTGTTGACAGATA
66 AAACTCGAAG-GTTTTGTTGACAGATA
1352124 ACCCTTTTTT
Statistics
Matches: 229, Mismatches: 30, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
168 1 0.00
169 143 0.62
170 85 0.37
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (169 bp):
ATAGATAACCATTCTCGCCTTGAGCTATGCTGTAAATTTGATATGCCCTTGAGCTGAATGAAATC
AAACTCGAAGGTTTTGTTGACAGATAGATCTTCTCGACTTAAGCTATGCTGTAAATTTGATATGC
CATTGAGCTGAATAAAATCAAACTCAAAGGTTTTTGTCG
Found at i:1358094 original size:2 final size:2
Alignment explanation
Indices: 1358087--1358128 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
1358077 ATGTACATGC
1358087 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1358129 TATTGTTATA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1358421 original size:19 final size:18
Alignment explanation
Indices: 1358397--1358455 Score: 82
Period size: 18 Copynumber: 3.2 Consensus size: 18
1358387 GTGGTCATTT
1358397 GGGACATAGTAGTCCTTTC
1 GGGACATAGTAGTCC-TTC
*
1358416 GGGACATAGTGGTCCTTC
1 GGGACATAGTAGTCCTTC
* *
1358434 GAGACATAGTAGTCATTC
1 GGGACATAGTAGTCCTTC
1358452 GGGA
1 GGGA
1358456 TAATTATTCA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
18 21 0.60
19 14 0.40
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.27
Consensus pattern (18 bp):
GGGACATAGTAGTCCTTC
Found at i:1360267 original size:2 final size:2
Alignment explanation
Indices: 1360260--1360292 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1360250 GTATAAAAGA
1360260 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1360293 AAGAAAAGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1364724 original size:5 final size:6
Alignment explanation
Indices: 1364699--1364732 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
1364689 TTCTTGATCG
*
1364699 AATAAA AATAAA AAGTGAA AATAAA AATAAA AAT
1 AATAAA AATAAA AA-TAAA AATAAA AATAAA AAT
1364733 TTAACGGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 20 0.80
7 5 0.20
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18
Consensus pattern (6 bp):
AATAAA
Found at i:1371435 original size:4 final size:4
Alignment explanation
Indices: 1371426--1371487 Score: 58
Period size: 4 Copynumber: 15.5 Consensus size: 4
1371416 CCTAAAACGA
* *
1371426 AAAT AAAT AAAT AAAAT AAAT AAAAT AAA- AAAT ATAT TAAT AAAAT AAAT
1 AAAT AAAT AAAT -AAAT AAAT -AAAT AAAT AAAT AAAT AAAT -AAAT AAAT
1371476 -AA- AAAT AAAT AA
1 AAAT AAAT AAAT AA
1371488 TATTAATATA
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
3 7 0.15
4 30 0.62
5 11 0.23
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:1371467 original size:29 final size:30
Alignment explanation
Indices: 1371425--1371500 Score: 102
Period size: 29 Copynumber: 2.6 Consensus size: 30
1371415 GCCTAAAACG
*
1371425 AAAATAAATAAATAAAATAAAT-AAAATAA
1 AAAATATATAAATAAAATAAATAAAAATAA
*
1371454 AAAATATATTAATAAAATAAATAAAAATAA
1 AAAATATATAAATAAAATAAATAAAAATAA
*
1371484 ATAATAT-TAATATAAAA
1 AAAATATATAA-ATAAAA
1371501 AATCATTTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
29 22 0.54
30 19 0.46
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (30 bp):
AAAATATATAAATAAAATAAATAAAAATAA
Found at i:1371495 original size:9 final size:9
Alignment explanation
Indices: 1371426--1371487 Score: 74
Period size: 9 Copynumber: 6.7 Consensus size: 9
1371416 CCTAAAACGA
1371426 AAAT-AAAT
1 AAATAAAAT
1371434 AAATAAAAT
1 AAATAAAAT
1371443 AAATAAAAT
1 AAATAAAAT
1371452 AAA-AAATAT
1 AAATAAA-AT
1371461 ATTAATAAAAT
1 A--AATAAAAT
1371472 AAATAAAAAT
1 AAAT-AAAAT
1371482 AAATAA
1 AAATAA
1371488 TATTAATATA
Statistics
Matches: 48, Mismatches: 0, Indels: 11
0.81 0.00 0.19
Matches are distributed among these distances:
8 7 0.15
9 24 0.50
10 9 0.19
11 5 0.10
12 3 0.06
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (9 bp):
AAATAAAAT
Found at i:1371498 original size:25 final size:25
Alignment explanation
Indices: 1371430--1371499 Score: 72
Period size: 25 Copynumber: 2.9 Consensus size: 25
1371420 AAACGAAAAT
* *
1371430 AAATAAATAAAATAAATA-AAATAA
1 AAATAAATAATATTAATATAAATAA
* * * *
1371454 AAA-ATATATTAATAAAATAAATAA
1 AAATAAATAATATTAATATAAATAA
1371478 AAATAAATAATATTAATATAAA
1 AAATAAATAATATTAATATAAA
1371500 AAATCATTTT
Statistics
Matches: 34, Mismatches: 10, Indels: 3
0.72 0.21 0.06
Matches are distributed among these distances:
23 8 0.24
24 12 0.35
25 14 0.41
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (25 bp):
AAATAAATAATATTAATATAAATAA
Found at i:1371499 original size:30 final size:29
Alignment explanation
Indices: 1371425--1371500 Score: 93
Period size: 30 Copynumber: 2.6 Consensus size: 29
1371415 GCCTAAAACG
1371425 AAAATA-AATAAATAAAATAAATAAAATAA
1 AAAATATAAT-AATAAAATAAATAAAATAA
*
1371454 AAAATATATTAATAAAATAAATAAAAATAA
1 AAAATATAATAATAAAATAAAT-AAAATAA
*
1371484 ATAATATTAAT-ATAAAA
1 AAAATA-TAATAATAAAA
1371501 AATCATTTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
29 18 0.44
30 20 0.49
31 3 0.07
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (29 bp):
AAAATATAATAATAAAATAAATAAAATAA
Found at i:1371540 original size:38 final size:36
Alignment explanation
Indices: 1371498--1371756 Score: 252
Period size: 38 Copynumber: 6.9 Consensus size: 36
1371488 TATTAATATA
* *
1371498 AAAAATCATTTTTAAAACTATATATTATATATGCTTTT
1 AAAAAT-ATTTTAAAAACTATATATTATATAT-ATTTT
* * * *
1371536 AAAAATTGTTTTCAAAACCATATAATATATATATTTT
1 AAAAA-TATTTTAAAAACTATATATTATATATATTTT
*
1371573 CAAAAATCATTTTTAAAACTATATA--ATATATATTTT
1 -AAAAAT-ATTTTAAAAACTATATATTATATATATTTT
* *
1371609 CAAAAATATTTTTAAAACTATATATTATATACATTTT
1 -AAAAATATTTTAAAAACTATATATTATATATATTTT
*
1371646 CAAAAAATATTTTCAAAAACTCTATATTATATATATTTT
1 --AAAAATATTTT-AAAAACTATATATTATATATATTTT
* ** * *
1371685 CAAAACGTTTCAAAAACTATATATTATATATTTTTT
1 AAAAATATTTTAAAAACTATATATTATATATATTTT
*
1371721 CAAAATATTTTCAAAAACTATATTATATATATATAT
1 AAAAATATTTT-AAAAACTATA-TAT-TATATATAT
1371757 ATATATATTT
Statistics
Matches: 188, Mismatches: 23, Indels: 19
0.82 0.10 0.08
Matches are distributed among these distances:
35 17 0.09
36 49 0.26
37 32 0.17
38 59 0.31
39 31 0.16
ACGTcount: A:0.46, C:0.09, G:0.01, T:0.44
Consensus pattern (36 bp):
AAAAATATTTTAAAAACTATATATTATATATATTTT
Found at i:1371631 original size:14 final size:13
Alignment explanation
Indices: 1371564--1371663 Score: 54
Period size: 13 Copynumber: 8.1 Consensus size: 13
1371554 CATATAATAT
1371564 ATATATTTTCAAA
1 ATATATTTTCAAA
*
1371577 A-ATCATTTTTAAA
1 ATAT-ATTTTCAAA
*
1371590 ACTATA---T-AAT
1 A-TATATTTTCAAA
1371600 ATATATTTTCAAA
1 ATATATTTTCAAA
*
1371613 A-ATATTTTTAAA
1 ATATATTTTCAAA
* *
1371625 ACTATATATT--AT
1 A-TATATTTTCAAA
*
1371637 ATACATTTTCAAA
1 ATATATTTTCAAA
*
1371650 AAATATTTTCAAA
1 ATATATTTTCAAA
1371663 A
1 A
1371664 ACTCTATATT
Statistics
Matches: 65, Mismatches: 11, Indels: 22
0.66 0.11 0.22
Matches are distributed among these distances:
9 4 0.06
10 3 0.05
11 7 0.11
12 16 0.25
13 26 0.40
14 7 0.11
15 2 0.03
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
ATATATTTTCAAA
Found at i:1371753 original size:73 final size:73
Alignment explanation
Indices: 1371545--1371754 Score: 257
Period size: 73 Copynumber: 2.8 Consensus size: 73
1371535 TAAAAATTGT
* * *
1371545 TTTCAAAACCATATAATATATATATTTTCAAAAATCATTTT-TAAAACTATATA-ATATATATTT
1 TTTCAAAACTATATATTATATATATTTTCAAAAAT-ATTTTCAAAAACTATATATATATATATTT
*
1371608 TCAAAAATA
65 TCAAAAACA
* * *
1371617 TTTTTAAAACTATATATTATATACATTTTCAAAAAATATTTTCAAAAACTCTATATTATATATAT
1 -TTTCAAAACTATATATTATATATATTTTC-AAAAATATTTTCAAAAACTATATA-TATATATAT
*
1371682 TTTC-AAAACG
63 TTTCAAAAACA
*
1371692 TTTCAAAAACTATATATTATATATTTTTTC-AAAATATTTTCAAAAACTATATTATATATATAT
1 TTTC-AAAACTATATATTATATATATTTTCAAAAATATTTTCAAAAACTATA-TATATATATAT
1371755 ATATATATAT
Statistics
Matches: 119, Mismatches: 12, Indels: 12
0.83 0.08 0.08
Matches are distributed among these distances:
73 59 0.50
74 21 0.18
75 27 0.23
76 12 0.10
ACGTcount: A:0.46, C:0.10, G:0.00, T:0.44
Consensus pattern (73 bp):
TTTCAAAACTATATATTATATATATTTTCAAAAATATTTTCAAAAACTATATATATATATATTTT
CAAAAACA
Found at i:1371769 original size:46 final size:44
Alignment explanation
Indices: 1371702--1371799 Score: 117
Period size: 46 Copynumber: 2.2 Consensus size: 44
1371692 TTTCAAAAAC
* *
1371702 TATATATTATATATTTTTTCAAAAT-ATTTTCAAAAACTATATTA
1 TATATATTATATATTATTTCAAAATCATTTTC-AAAACTATATAA
* * *
1371746 TATATATATATATATATATTTCAATATCGTTTTCAAAATTATATAA
1 TATATAT-TATATAT-TATTTCAAAATCATTTTCAAAACTATATAA
1371792 TATATATT
1 TATATATT
1371800 TTCGAAAACC
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
44 7 0.15
45 8 0.17
46 26 0.57
47 5 0.11
ACGTcount: A:0.43, C:0.06, G:0.01, T:0.50
Consensus pattern (44 bp):
TATATATTATATATTATTTCAAAATCATTTTCAAAACTATATAA
Found at i:1371798 original size:48 final size:44
Alignment explanation
Indices: 1371702--1371798 Score: 106
Period size: 48 Copynumber: 2.1 Consensus size: 44
1371692 TTTCAAAAAC
* *
1371702 TATATATTATATATTTTTTCAAAATATTTTCAAAAACTATATTA
1 TATATATTATATATTATTTCAAAATATTTTCAAAAACTATAATA
* *
1371746 TATATATATATATATATATTTCAATATCGTTTTCAAAATTA-TATAATA
1 TATATAT-TATATAT-TATTTCAAAAT-ATTTTCAAAA--ACTATAATA
1371794 TATAT
1 TATAT
1371799 TTTCGAAAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
44 7 0.16
45 7 0.16
46 9 0.20
47 9 0.20
48 11 0.25
49 1 0.02
ACGTcount: A:0.43, C:0.06, G:0.01, T:0.49
Consensus pattern (44 bp):
TATATATTATATATTATTTCAAAATATTTTCAAAAACTATAATA
Found at i:1377528 original size:13 final size:13
Alignment explanation
Indices: 1377506--1377552 Score: 76
Period size: 13 Copynumber: 3.6 Consensus size: 13
1377496 CCTCTCGAGT
*
1377506 TAACCTGAACTCC
1 TAACCCGAACTCC
1377519 TAACCCGAACTCC
1 TAACCCGAACTCC
*
1377532 TAACTCGAACTCC
1 TAACCCGAACTCC
1377545 TAACCCGA
1 TAACCCGA
1377553 GATTTGGGAC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 31 1.00
ACGTcount: A:0.32, C:0.40, G:0.09, T:0.19
Consensus pattern (13 bp):
TAACCCGAACTCC
Found at i:1382168 original size:21 final size:21
Alignment explanation
Indices: 1382137--1382254 Score: 78
Period size: 21 Copynumber: 5.3 Consensus size: 21
1382127 CGATTTACAT
*
1382137 ATTCGCATTGCGATAGTCCAA
1 ATTCGCGTTGCGATAGTCCAA
* *
1382158 GTTCGCGTTGCGATTTATTCCAA
1 ATTCGCGTTGCGA--TAGTCCAA
* *
1382181 ATTCCAAGTTTGTTGCGATAGTCGAA
1 ATT-C--G--CGTTGCGATAGTCCAA
* *
1382207 GTTCGCGTTGCGATTTATTCCAA
1 ATTCGCGTTGCGA--TAGTCCAA
1382230 ATT--CGTTGCGATAGTCCAA
1 ATTCGCGTTGCGATAGTCCAA
1382249 ATTCGC
1 ATTCGC
1382255 AACGACGGTA
Statistics
Matches: 73, Mismatches: 13, Indels: 22
0.68 0.12 0.20
Matches are distributed among these distances:
19 10 0.14
21 27 0.37
23 18 0.25
24 1 0.01
25 1 0.01
26 9 0.12
28 7 0.10
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (21 bp):
ATTCGCGTTGCGATAGTCCAA
Found at i:1382899 original size:15 final size:15
Alignment explanation
Indices: 1382881--1382914 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
1382871 TTGTCTCGTC
1382881 TCGTCTCGGGTCGGG
1 TCGTCTCGGGTCGGG
* *
1382896 TCGTGTCGTGTCGGG
1 TCGTCTCGGGTCGGG
1382911 TCGT
1 TCGT
1382915 GGTCGTGGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.00, C:0.24, G:0.44, T:0.32
Consensus pattern (15 bp):
TCGTCTCGGGTCGGG
Found at i:1382920 original size:6 final size:6
Alignment explanation
Indices: 1382889--1382929 Score: 54
Period size: 5 Copynumber: 7.5 Consensus size: 6
1382879 TCTCGTCTCG
1382889 GGTCG- GGTCGT -GTCGT -GTCG- GGTCGT GGTCGT GGTCGT GGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
1382930 AATACGTGTC
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
5 18 0.55
6 15 0.45
ACGTcount: A:0.00, C:0.17, G:0.51, T:0.32
Consensus pattern (6 bp):
GGTCGT
Found at i:1383042 original size:19 final size:19
Alignment explanation
Indices: 1383018--1383084 Score: 71
Period size: 19 Copynumber: 3.3 Consensus size: 19
1383008 TCGTTTCGAT
1383018 TTTGGACTATCGCAACGAA
1 TTTGGACTATCGCAACGAA
*
1383037 TTTGGAATAAATCGCAACGCGAA
1 TTTGGACT--ATCGCAA--CGAA
* *
1383060 CTTCGACTATCGCAACGAA
1 TTTGGACTATCGCAACGAA
1383079 TTTGGA
1 TTTGGA
1383085 ATAAATCGCA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
19 15 0.39
21 14 0.37
23 9 0.24
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (19 bp):
TTTGGACTATCGCAACGAA
Found at i:1383052 original size:21 final size:21
Alignment explanation
Indices: 1383026--1383097 Score: 85
Period size: 21 Copynumber: 3.4 Consensus size: 21
1383016 ATTTTGGACT
1383026 ATCGCAACGAATTTGGAATAA
1 ATCGCAACGAATTTGGAATAA
* * *
1383047 ATCGCAACGCGAACTTCGACT--
1 ATCGCAA--CGAATTTGGAATAA
1383068 ATCGCAACGAATTTGGAATAA
1 ATCGCAACGAATTTGGAATAA
1383089 ATCGCAACG
1 ATCGCAACG
1383098 CGATAGTCGA
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
19 9 0.22
21 23 0.56
23 9 0.22
ACGTcount: A:0.38, C:0.22, G:0.19, T:0.21
Consensus pattern (21 bp):
ATCGCAACGAATTTGGAATAA
Found at i:1383081 original size:42 final size:42
Alignment explanation
Indices: 1383022--1383167 Score: 161
Period size: 42 Copynumber: 3.3 Consensus size: 42
1383012 TTCGATTTTG
1383022 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
1383064 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGATAGTCGAAGTTC
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGA-A--C----TTC
*
1383113 G-C-ATTGCGATAGTCGAATTTGGAATAAATCGCAACGCGAACTTC
1 GACTATCGC-A-A--CGAATTTGGAATAAATCGCAACGCGAACTTC
*
1383157 GATTATCGCAA
1 GACTATCGCAA
1383168 TGCGAACTTG
Statistics
Matches: 88, Mismatches: 3, Indels: 24
0.77 0.03 0.21
Matches are distributed among these distances:
42 37 0.42
43 1 0.01
44 5 0.06
45 2 0.02
46 4 0.05
47 4 0.05
48 3 0.03
49 5 0.06
50 1 0.01
51 26 0.30
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.23
Consensus pattern (42 bp):
GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
Found at i:1383114 original size:21 final size:21
Alignment explanation
Indices: 1383090--1383129 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
1383080 TTGGAATAAA
1383090 TCGCAACGCGATAGTCGAAGT
1 TCGCAACGCGATAGTCGAAGT
**
1383111 TCGCATTGCGATAGTCGAA
1 TCGCAACGCGATAGTCGAA
1383130 TTTGGAATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.23
Consensus pattern (21 bp):
TCGCAACGCGATAGTCGAAGT
Found at i:1383164 original size:21 final size:21
Alignment explanation
Indices: 1383140--1383194 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
1383130 TTTGGAATAA
* *
1383140 ATCGCAACGCGAACTTCGATT
1 ATCGCAATGCGAACTTCGACT
*
1383161 ATCGCAATGCGAACTTGGACT
1 ATCGCAATGCGAACTTCGACT
1383182 ATCGCAATGCGAA
1 ATCGCAATGCGAA
1383195 TATGTAAATC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22
Consensus pattern (21 bp):
ATCGCAATGCGAACTTCGACT
Found at i:1383235 original size:113 final size:112
Alignment explanation
Indices: 1383047--1383344 Score: 415
Period size: 113 Copynumber: 2.6 Consensus size: 112
1383037 TTTGGAATAA
* *
1383047 ATCGCAACGCGAACTTCGACTATCGCAA--CGAATTTGGAATAAATCGCAACGCGATAGTCGAAG
1 ATCGCAATGCGAACTTCGACTATCGCAATGCGAA-TT-G--TAAATCGCAATGCGATAGTCGAAG
* *
1383110 TTCGCATTGCGATAGTCGAATTTGGAATAAATCGCAACGCGAACTTCGATT
62 TTCGCGTTGCGATAGTCGAATTTGGAATAAATCGCAACGCGAACTTCGACT
*
1383161 ATCGCAATGCGAACTTGGACTATCGCAATGCGAATATGTAAATCGCAATGCGATAGTCGAAGTTC
1 ATCGCAATGCGAACTTCGACTATCGCAATGCGAAT-TGTAAATCGCAATGCGATAGTCGAAGTTC
*
1383226 GCGTTGCGATAGTCGAATTTGGAATAAATCGCAACGCGAACTTGGACT
65 GCGTTGCGATAGTCGAATTTGGAATAAATCGCAACGCGAACTTCGACT
* * *
1383274 ATCGCAATGCGAACTTCGACTATCGCATTGCG-ATT-TACATATTCGCATTGCGATAGTCCAAGT
1 ATCGCAATGCGAACTTCGACTATCGCAATGCGAATTGTA-A-A-TCGCAATGCGATAGTCGAAGT
1383337 TCGCGTTG
63 TCGCGTTG
1383345 TTCGCATTGC
Statistics
Matches: 168, Mismatches: 10, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
110 2 0.01
111 2 0.01
112 3 0.02
113 128 0.76
114 26 0.15
115 2 0.01
116 5 0.03
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (112 bp):
ATCGCAATGCGAACTTCGACTATCGCAATGCGAATTGTAAATCGCAATGCGATAGTCGAAGTTCG
CGTTGCGATAGTCGAATTTGGAATAAATCGCAACGCGAACTTCGACT
Found at i:1383270 original size:23 final size:21
Alignment explanation
Indices: 1383239--1383300 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
1383229 TTGCGATAGT
*
1383239 CGAATTTGGAATAAATCGCAACG
1 CGAACTTGGAAT--ATCGCAACG
* *
1383262 CGAACTTGGACTATCGCAATG
1 CGAACTTGGAATATCGCAACG
* *
1383283 CGAACTTCGACTATCGCA
1 CGAACTTGGAATATCGCA
1383301 TTGCGATTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 25 0.71
23 10 0.29
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (21 bp):
CGAACTTGGAATATCGCAACG
Found at i:1383305 original size:21 final size:21
Alignment explanation
Indices: 1383253--1383306 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
1383243 TTTGGAATAA
* *
1383253 ATCGCAACGCGAACTTGGACT
1 ATCGCAATGCGAACTTCGACT
1383274 ATCGCAATGCGAACTTCGACT
1 ATCGCAATGCGAACTTCGACT
*
1383295 ATCGCATTGCGA
1 ATCGCAATGCGA
1383307 TTTACATATT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (21 bp):
ATCGCAATGCGAACTTCGACT
Found at i:1383351 original size:30 final size:30
Alignment explanation
Indices: 1383315--1383374 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
1383305 GATTTACATA
1383315 TTCGCATTGCGATAGTCCAAGTTCGCGTTG
1 TTCGCATTGCGATAGTCCAAGTTCGCGTTG
1383345 TTCGCATTGCGATAGTCCAAGTTCGCGTTG
1 TTCGCATTGCGATAGTCCAAGTTCGCGTTG
1383375 CGATAGTCGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.17, C:0.23, G:0.27, T:0.33
Consensus pattern (30 bp):
TTCGCATTGCGATAGTCCAAGTTCGCGTTG
Found at i:1383370 original size:21 final size:21
Alignment explanation
Indices: 1383344--1383398 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
1383334 AGTTCGCGTT
*
1383344 GTTCGCATTGCGATAGTCCAA
1 GTTCGCGTTGCGATAGTCCAA
*
1383365 GTTCGCGTTGCGATAGTCGAA
1 GTTCGCGTTGCGATAGTCCAA
1383386 GTTCGCGTTGCGA
1 GTTCGCGTTGCGA
1383399 ATTTGGAAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.18, C:0.22, G:0.31, T:0.29
Consensus pattern (21 bp):
GTTCGCGTTGCGATAGTCCAA
Found at i:1386041 original size:16 final size:16
Alignment explanation
Indices: 1386020--1386056 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
1386010 TTAGAGGGTT
1386020 TTTAATTT-TAATTTAA
1 TTTAATTTATAATTT-A
1386036 TTTAATTTATAATTTA
1 TTTAATTTATAATTTA
1386052 TTTAA
1 TTTAA
1386057 GATTTAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTAATTTATAATTTA
Found at i:1391209 original size:23 final size:23
Alignment explanation
Indices: 1391183--1391235 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
1391173 AAGACTATGT
1391183 TGAATGAAACATCAAAACACTGC
1 TGAATGAAACATCAAAACACTGC
*
1391206 TGAATGAAACATCACAACACTGC
1 TGAATGAAACATCAAAACACTGC
1391229 TGAATGA
1 TGAATGA
1391236 TTCAGCATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.45, C:0.21, G:0.15, T:0.19
Consensus pattern (23 bp):
TGAATGAAACATCAAAACACTGC
Found at i:1394081 original size:2 final size:2
Alignment explanation
Indices: 1394074--1394102 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
1394064 AACTTGGCGC
1394074 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1394103 ATAATGAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1395484 original size:28 final size:29
Alignment explanation
Indices: 1395422--1395484 Score: 69
Period size: 28 Copynumber: 2.2 Consensus size: 29
1395412 CACCTACATC
*
1395422 ATTAAACAAATATATACTTTTTATAATTA
1 ATTAAACAAATATATACTTATTATAATTA
*
1395451 AATAAA-AAATATAT-CTATATTA-AATCTA
1 ATTAAACAAATATATACT-TATTATAAT-TA
1395479 ATTAAA
1 ATTAAA
1395485 TATTGGATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
27 5 0.17
28 19 0.66
29 5 0.17
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (29 bp):
ATTAAACAAATATATACTTATTATAATTA
Found at i:1396867 original size:12 final size:12
Alignment explanation
Indices: 1396850--1396895 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
1396840 GAAAATAAAG
*
1396850 AAAACTTAATGA
1 AAAACTTGATGA
*
1396862 AAAACTTGATGT
1 AAAACTTGATGA
1396874 AAAACTTGATG-
1 AAAACTTGATGA
*
1396885 AATACTTGATG
1 AAAACTTGATG
1396896 CCCTAACTCC
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
11 10 0.32
12 21 0.68
ACGTcount: A:0.46, C:0.09, G:0.15, T:0.30
Consensus pattern (12 bp):
AAAACTTGATGA
Found at i:1396877 original size:24 final size:23
Alignment explanation
Indices: 1396850--1396895 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
1396840 GAAAATAAAG
1396850 AAAACTTAATGAAAAACTTGATGT
1 AAAACTTAATG-AAAACTTGATGT
* *
1396874 AAAACTTGATGAATACTTGATG
1 AAAACTTAATGAAAACTTGATG
1396896 CCCTAACTCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.46, C:0.09, G:0.15, T:0.30
Consensus pattern (23 bp):
AAAACTTAATGAAAACTTGATGT
Found at i:1397964 original size:29 final size:26
Alignment explanation
Indices: 1397931--1397992 Score: 72
Period size: 28 Copynumber: 2.3 Consensus size: 26
1397921 CGTAACATTT
*
1397931 TTTCTTTTCTTTTGCACAATCTCTTTTTC
1 TTTCTTTTCCTTTGCACAA--T-TTTTTC
*
1397960 TTTC-TTTCCTTTGCACGATTTTTTC
1 TTTCTTTTCCTTTGCACAATTTTTTC
1397985 TTTCTTTT
1 TTTCTTTT
1397993 TCTCAATGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
25 10 0.33
26 4 0.13
28 12 0.40
29 4 0.13
ACGTcount: A:0.08, C:0.23, G:0.05, T:0.65
Consensus pattern (26 bp):
TTTCTTTTCCTTTGCACAATTTTTTC
Found at i:1404221 original size:16 final size:16
Alignment explanation
Indices: 1404196--1404237 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
1404186 TGAAAAAATA
1404196 GCAAAGTTGAAAGTTG
1 GCAAAGTTGAAAGTTG
*
1404212 GCAAAATTGAAAGTTG
1 GCAAAGTTGAAAGTTG
1404228 GCAAAGTTGA
1 GCAAAGTTGA
1404238 CATCTTTGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.40, C:0.07, G:0.29, T:0.24
Consensus pattern (16 bp):
GCAAAGTTGAAAGTTG
Found at i:1408960 original size:16 final size:16
Alignment explanation
Indices: 1408939--1408974 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
1408929 ATTAGTAAAG
1408939 TTGAAAGTTGGCAAAA
1 TTGAAAGTTGGCAAAA
*
1408955 TTGAAAGTTGGCAAAG
1 TTGAAAGTTGGCAAAA
1408971 TTGA
1 TTGA
1408975 CATCTTTGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.39, C:0.06, G:0.28, T:0.28
Consensus pattern (16 bp):
TTGAAAGTTGGCAAAA
Found at i:1408970 original size:25 final size:25
Alignment explanation
Indices: 1408926--1408973 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
1408916 TTTGGCTTGA
1408926 AAAATTAGTAAAGTTGAAAGTTGGC
1 AAAATTAGTAAAGTTGAAAGTTGGC
1408951 AAAATT-G-AAAGTTGGCAAAGTTG
1 AAAATTAGTAAAGTT-G-AAAGTTG
1408974 ACATCTTTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 6 0.29
24 2 0.10
25 13 0.62
ACGTcount: A:0.44, C:0.04, G:0.25, T:0.27
Consensus pattern (25 bp):
AAAATTAGTAAAGTTGAAAGTTGGC
Found at i:1418285 original size:3 final size:3
Alignment explanation
Indices: 1418268--1418334 Score: 93
Period size: 3 Copynumber: 22.3 Consensus size: 3
1418258 CTACCAAAAC
*
1418268 ATT ATT AATT A-T ATT ATT ATAT ATT ATT ATT ATT ATT ACT ATT ATT
1 ATT ATT -ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT
1418314 ATT ATT ATT ATT -TT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT A
1418335 ACAAAATTAT
Statistics
Matches: 58, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
2 4 0.07
3 48 0.83
4 6 0.10
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:1420183 original size:23 final size:23
Alignment explanation
Indices: 1420157--1420202 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
1420147 TTTGAAGTAA
1420157 GTTAATCATATTTCAATAAATGG
1 GTTAATCATATTTCAATAAATGG
1420180 GTTAATCATATTTCAATAAATGG
1 GTTAATCATATTTCAATAAATGG
1420203 ATCATATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.39
Consensus pattern (23 bp):
GTTAATCATATTTCAATAAATGG
Found at i:1420208 original size:19 final size:21
Alignment explanation
Indices: 1420161--1420211 Score: 70
Period size: 23 Copynumber: 2.4 Consensus size: 21
1420151 AAGTAAGTTA
1420161 ATCATATTTCAATAAATGGGTT
1 ATCATATTTCAATAAATGGG-T
1420183 AATCATATTTCAATAAAT-GG-
1 -ATCATATTTCAATAAATGGGT
1420203 ATCATATTT
1 ATCATATTT
1420212 TAATTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.32
22 2 0.07
23 17 0.61
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41
Consensus pattern (21 bp):
ATCATATTTCAATAAATGGGT
Found at i:1423167 original size:22 final size:20
Alignment explanation
Indices: 1423130--1423181 Score: 68
Period size: 22 Copynumber: 2.5 Consensus size: 20
1423120 TTAATCGTTT
1423130 TTTATTTTTTTTATTTTTAA
1 TTTATTTTTTTTATTTTTAA
1423150 TTTATTTTTAATTTATTTTTAA
1 TTTATTTTT--TTTATTTTTAA
* *
1423172 ATTGTTTTTT
1 TTTATTTTTT
1423182 AAATTTTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 10 0.36
22 18 0.64
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (20 bp):
TTTATTTTTTTTATTTTTAA
Found at i:1423174 original size:12 final size:11
Alignment explanation
Indices: 1423130--1423171 Score: 70
Period size: 11 Copynumber: 4.0 Consensus size: 11
1423120 TTAATCGTTT
1423130 TTTATTTTT--
1 TTTATTTTTAA
1423139 TTTATTTTTAA
1 TTTATTTTTAA
1423150 TTTATTTTTAA
1 TTTATTTTTAA
1423161 TTTATTTTTAA
1 TTTATTTTTAA
1423172 ATTGTTTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
9 9 0.29
11 22 0.71
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTATTTTTAA
Found at i:1423179 original size:11 final size:11
Alignment explanation
Indices: 1423140--1423186 Score: 58
Period size: 11 Copynumber: 4.2 Consensus size: 11
1423130 TTTATTTTTT
*
1423140 TTATTTTTAAT
1 TTATTTTTAAA
*
1423151 TTATTTTTAAT
1 TTATTTTTAAA
1423162 TTATTTTTAAA
1 TTATTTTTAAA
*
1423173 TTGTTTTTTAAA
1 TT-ATTTTTAAA
1423185 TT
1 TT
1423187 TTATTTCTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
11 23 0.70
12 10 0.30
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (11 bp):
TTATTTTTAAA
Found at i:1423388 original size:19 final size:18
Alignment explanation
Indices: 1423314--1423378 Score: 55
Period size: 18 Copynumber: 3.8 Consensus size: 18
1423304 GGGTTTTATA
1423314 TTTTATTTTATTTTTCAT
1 TTTTATTTTATTTTTCAT
* * *
1423332 TTTCATATTA-ATTT-A-
1 TTTTATTTTATTTTTCAT
* **
1423347 GTTGGTTTTATTTTTCAT
1 TTTTATTTTATTTTTCAT
1423365 TTTTATTTTATTTT
1 TTTTATTTTATTTT
1423379 CCTCTTTTTA
Statistics
Matches: 33, Mismatches: 11, Indels: 6
0.66 0.22 0.12
Matches are distributed among these distances:
15 6 0.18
16 4 0.12
17 4 0.12
18 19 0.58
ACGTcount: A:0.18, C:0.05, G:0.05, T:0.72
Consensus pattern (18 bp):
TTTTATTTTATTTTTCAT
Found at i:1424717 original size:15 final size:15
Alignment explanation
Indices: 1424689--1424718 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
1424679 ACCTCACTAA
1424689 CTCTTTTCATTTTTG
1 CTCTTTTCATTTTTG
1424704 CTCTCTTTCATTTTT
1 CTCT-TTTCATTTTT
1424719 ATCATTTACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.07, C:0.23, G:0.03, T:0.67
Consensus pattern (15 bp):
CTCTTTTCATTTTTG
Found at i:1425290 original size:33 final size:33
Alignment explanation
Indices: 1425253--1425318 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
1425243 GAGCACTTAG
1425253 TGGTTTTTATCTCTTACGAAATAACACTTTTAT
1 TGGTTTTTATCTCTTACGAAATAACACTTTTAT
*
1425286 TGGTTTTTGTCTCTTACGAAATAACACTTTTAT
1 TGGTTTTTATCTCTTACGAAATAACACTTTTAT
1425319 CCCAATAAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.26, C:0.15, G:0.11, T:0.48
Consensus pattern (33 bp):
TGGTTTTTATCTCTTACGAAATAACACTTTTAT
Found at i:1434846 original size:18 final size:18
Alignment explanation
Indices: 1434812--1434885 Score: 69
Period size: 18 Copynumber: 3.9 Consensus size: 18
1434802 CGAGGGTTAC
*
1434812 AGTGGTCCTAT-GAGACAT
1 AGTGGTCCT-TCGGGACAT
1434830 AGTGGTCCTTCGGGACAAT
1 AGTGGTCCTTCGGGAC-AT
* * *
1434849 ACAGTGGTCCTACGGTACGT
1 --AGTGGTCCTTCGGGACAT
1434869 AGTGGTCCTTCGGGACA
1 AGTGGTCCTTCGGGACA
1434886 AATTTCAGTG
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
17 1 0.02
18 27 0.60
19 2 0.04
20 1 0.02
21 14 0.31
ACGTcount: A:0.22, C:0.22, G:0.31, T:0.26
Consensus pattern (18 bp):
AGTGGTCCTTCGGGACAT
Found at i:1434872 original size:39 final size:39
Alignment explanation
Indices: 1434809--1434886 Score: 122
Period size: 39 Copynumber: 2.0 Consensus size: 39
1434799 AGTCGAGGGT
*
1434809 TACAGTGGTCCTATGAGACATAGTGGTCCTTCGGGACAA
1 TACAGTGGTCCTACGAGACATAGTGGTCCTTCGGGACAA
*
1434848 TACAGTGGTCCTACG-GTACGTAGTGGTCCTTCGGGACAA
1 TACAGTGGTCCTACGAG-ACATAGTGGTCCTTCGGGACAA
1434887 ATTTCAGTGC
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
38 1 0.03
39 35 0.97
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (39 bp):
TACAGTGGTCCTACGAGACATAGTGGTCCTTCGGGACAA
Found at i:1435133 original size:18 final size:18
Alignment explanation
Indices: 1435110--1435170 Score: 77
Period size: 18 Copynumber: 3.4 Consensus size: 18
1435100 AATATGTTAT
*
1435110 ATGATAGTGATAGAGATC
1 ATGATAATGATAGAGATC
** *
1435128 ATGATAATGATATTGATG
1 ATGATAATGATAGAGATC
*
1435146 TTGATAATGATAGAGATC
1 ATGATAATGATAGAGATC
1435164 ATGATAA
1 ATGATAA
1435171 ATATGTTCGT
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.41, C:0.03, G:0.23, T:0.33
Consensus pattern (18 bp):
ATGATAATGATAGAGATC
Found at i:1435158 original size:36 final size:36
Alignment explanation
Indices: 1435111--1435191 Score: 112
Period size: 36 Copynumber: 2.2 Consensus size: 36
1435101 ATATGTTATA
*
1435111 TGATAGTGATAGAGATCATGAT-AATGATATT-GATGT
1 TGATAATGATAGAGATCATGATAAAT-ATATTCG-TGT
*
1435147 TGATAATGATAGAGATCATGATAAATATGTTCGTGT
1 TGATAATGATAGAGATCATGATAAATATATTCGTGT
1435183 TGATAATGA
1 TGATAATGA
1435192 GGGTATATGT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
36 37 0.90
37 4 0.10
ACGTcount: A:0.37, C:0.04, G:0.23, T:0.36
Consensus pattern (36 bp):
TGATAATGATAGAGATCATGATAAATATATTCGTGT
Found at i:1440708 original size:2 final size:2
Alignment explanation
Indices: 1440701--1440731 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
1440691 ATTATATTTC
1440701 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1440732 ATGAGTTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1441567 original size:17 final size:18
Alignment explanation
Indices: 1441545--1441588 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
1441535 GGTATTTTAG
1441545 AAATAATGAGTAAAT-AA
1 AAATAATGAGTAAATGAA
1441562 AAATAAAT-AGTAAATGAA
1 AAAT-AATGAGTAAATGAA
*
1441580 AAATGATGA
1 AAATAATGA
1441589 AAAGTAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
17 13 0.57
18 10 0.43
ACGTcount: A:0.64, C:0.00, G:0.14, T:0.23
Consensus pattern (18 bp):
AAATAATGAGTAAATGAA
Found at i:1442934 original size:131 final size:132
Alignment explanation
Indices: 1442695--1443061 Score: 436
Period size: 131 Copynumber: 2.8 Consensus size: 132
1442685 TTTAAGTGAA
* * * * * *
1442695 AAAATGATAATATCTAATTATTTCCAATCAAGAATAAATGACCTCTCATACCTTGAAACAATCTT
1 AAAATGATAATATCTAATTATTTTCAATCGAGAATAAATGACCTCTCATACCTTTAAAGAGTCAT
* * * * *
1442760 TTATTACTCCAATCGAAATGAAGAGATATCATCATT-TCGTCTTAAAATTCAATATTGATTCGAG
66 TTATTACTCCAATCGAAATGAAGAGATATTATTATTCTCATCTTAAAAATCAATATTAATTCGAG
1442824 TG
131 TG
* * * *
1442826 AAAACGATAATATCTAATGATTTTCAATCGGGAATAAATGACCTCTTATACCTTTAAAGAGTCAT
1 AAAATGATAATATCTAATTATTTTCAATCGAGAATAAATGACCTCTCATACCTTTAAAGAGTCAT
* * *
1442891 TTATTGCTTCAATCAAAATGAAGAGATATTATTATTCT-ATCTTAAAAATCAATATTAATTCGAG
66 TTATTACTCCAATCGAAATGAAGAGATATTATTATTCTCATCTTAAAAATCAATATTAATTCGAG
1442955 TG
131 TG
* ** * * * *
1442957 AGAATGATAATATAGAGTTA-TTTCTAATCGAGAATAAGTGACCTCTCATGCC-TTAGAGCAGTC
1 AAAATGATAATATCTAATTATTTTC-AATCGAGAATAAATGACCTCTCATACCTTTAAAG-AGTC
* * *
1443020 ATTTATTACTCCAACCGAAATGAAAAGATATTACTATTCTCA
64 ATTTATTACTCCAATCGAAATGAAGAGATATTATTATTCTCA
1443062 ATATTGATTC
Statistics
Matches: 197, Mismatches: 35, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
130 9 0.05
131 186 0.94
132 2 0.01
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.34
Consensus pattern (132 bp):
AAAATGATAATATCTAATTATTTTCAATCGAGAATAAATGACCTCTCATACCTTTAAAGAGTCAT
TTATTACTCCAATCGAAATGAAGAGATATTATTATTCTCATCTTAAAAATCAATATTAATTCGAG
TG
Found at i:1443386 original size:20 final size:20
Alignment explanation
Indices: 1443361--1443400 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
1443351 TAAAATTATT
1443361 GAAAGTAACTTTCTTATATG
1 GAAAGTAACTTTCTTATATG
*
1443381 GAAAGTAAGTTTCTTATATG
1 GAAAGTAACTTTCTTATATG
1443401 TTAAGACAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.40
Consensus pattern (20 bp):
GAAAGTAACTTTCTTATATG
Found at i:1444622 original size:35 final size:35
Alignment explanation
Indices: 1444567--1444662 Score: 138
Period size: 35 Copynumber: 2.7 Consensus size: 35
1444557 AATGAATTAT
* *
1444567 GAATTTGGGGTTGAGTATGTAATTAAAATATTTTG
1 GAATTTGGGGTTTAGAATGTAATTAAAATATTTTG
* * *
1444602 GAATTTGAGGTTTAGAATGTAATTGAAGTATTTTG
1 GAATTTGGGGTTTAGAATGTAATTAAAATATTTTG
*
1444637 GAATTTGGGGTTTAGGATGTAATTAA
1 GAATTTGGGGTTTAGAATGTAATTAA
1444663 TGATTGTGTT
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 53 1.00
ACGTcount: A:0.31, C:0.00, G:0.27, T:0.42
Consensus pattern (35 bp):
GAATTTGGGGTTTAGAATGTAATTAAAATATTTTG
Found at i:1446056 original size:10 final size:10
Alignment explanation
Indices: 1446041--1446073 Score: 50
Period size: 11 Copynumber: 3.3 Consensus size: 10
1446031 TGGCATAGAT
1446041 TTTTTATTGA
1 TTTTTATTGA
1446051 TTTTTATTTGA
1 TTTTTA-TTGA
1446062 TTTTT-TTGA
1 TTTTTATTGA
1446071 TTT
1 TTT
1446074 GGTTGACTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 7 0.32
10 6 0.27
11 9 0.41
ACGTcount: A:0.15, C:0.00, G:0.09, T:0.76
Consensus pattern (10 bp):
TTTTTATTGA
Found at i:1447214 original size:269 final size:268
Alignment explanation
Indices: 1446577--1447690 Score: 1304
Period size: 269 Copynumber: 4.1 Consensus size: 268
1446567 TCAAGAAGAA
* * * * * *
1446577 TTGATTCTTTCCACTATTCTTTAGGGAAGATTGAATCCAGGTAGACTTGTTCCACTGTTAGTCAG
1 TTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTTACTCAG
* * * * * * * * *
1446642 GGAAGATTAAATATTGGAAGAGAGGGATCTATTCTGCTTATTTTTTAGGGAAAATAAGATTTGGG
66 GGAAGATCAAATATTGAAAGAGAGGGATCTGTTCCGCTTCTTCTTGAGGGAAAATCAGATATGGG
* * * * *
1446707 GACGTTGATTCATTCTAATATTCTACAGGGAAAATTGAATCGAGGCAGACTTGTTCCACTATTAC
131 GACATTGATTCATTCCACTATTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTATTAC
* * * *
1446772 TCAGGGAATATAAAATCTTGAAAGAGAG-GAATTTGTTTCGCTTTTTCTTGAGAGAAAATCAAAT
196 TCAGGGAATATCAAATCTTGAAAGAGAGTG-ATTTGTTTCGCTTCTTCTTGAGGGAAAATCAGAT
* *
1446836 CTGGGGATG
260 TTGGGGACG
* * * *
1446845 TTGATTCATTCCATTGTTCTTCAGGGAAGATTGAATCGAGGTAGACTTGTTCCACTTTTACTCAA
1 TTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTTACTCAG
* * * * * **
1446910 GGAATATCAAATCTT-AAAGGAGAGGGATCTGTTCCGCTTCTTCTTGGGGGAAAATCATATCTAT
66 GGAAGATCAAATATTGAAA-GAGAGGGATCTGTTCCGCTTCTTCTTGAGGGAAAATCAGATATGG
** * * * *
1446974 AAATATTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGACAGACTTGTTCCACTATTC
130 GGACATTGATTCATTCCACTATTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTATTA
* * * * *
1447039 CTCAGGGAAGATCAAAT-TTGGAAAGAGAGTGATCTATTTCGCTTCTTTTTTTAGGGAAAATCAG
195 CTCAGGGAATATCAAATCTT-GAAAGAGAGTGATTTGTTTCGCTTC-TTCTTGAGGGAAAATCAG
1447103 ATTTGGGGACG
258 ATTTGGGGACG
* * * *
1447114 TTGATTTATTCTATTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTTCCTCTA
1 TTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTTACTC-A
* * * *
1447179 -GGAAGATCAAAT-TTGGAAAGAGAGGGATTTGTTCCGCTTCTTTTTGAGAGAAAATCAGATGTG
65 GGGAAGATCAAATATT-GAAAGAGAGGGATCTGTTCCGCTTCTTCTTGAGGGAAAATCAGATATG
* * * *
1447242 GGGACATTGTTTCATTCCATTATTCTTCAGGGAAGATTGAATCGAGGCATACTTGTTCCACTGTT
129 GGGACATTGATTCATTCCACTATTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTATT
* * * * **
1447307 CCTAAGGGAATATCAAATCTTGAAAGAGAGGGATATGTTTTTCTTCTTCTTGAGGGAAAAATCAG
194 ACTCAGGGAATATCAAATCTTGAAAGAGAGTGATTTGTTTCGCTTCTTCTTGAGGG-AAAATCAG
* *
1447372 ATATGGGGACA
258 ATTTGGGGACG
*
1447383 TTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTATTACTCAG
1 TTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTTACTCAG
* * * ** * *
1447448 GGAATATCAAATATTGAAAAAGAGGGATATGTTTTGCTTTTTCTTTAGGGAAAATCAGATATGGG
66 GGAAGATCAAATATTGAAAGAGAGGGATCTGTTCCGCTTCTTCTTGAGGGAAAATCAGATATGGG
* * * * * ** * *
1447513 GACGTTGATTTATTTCACTGTTATTCAGGGAAGATTGAATTAAGGCAGATTTGTTCCACTGTTAC
131 GACATTGATTCATTCCACTATTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTATTAC
* *
1447578 TCAGGGAATATCAAATCTTGAAAGAGA-TGGATTTGTTCCGCTTCTTCTTGAGGGAAAATTAGAT
196 TCAGGGAATATCAAATCTTGAAAGAGAGT-GATTTGTTTCGCTTCTTCTTGAGGGAAAATCAGAT
1447642 TTGGGGACG
260 TTGGGGACG
* * *
1447651 TTGATTCATTCGACTGTTATTCAGAGAAGATTGAATCGAG
1 TTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAG
1447691 TTTGATTTTC
Statistics
Matches: 716, Mismatches: 118, Indels: 24
0.83 0.14 0.03
Matches are distributed among these distances:
267 4 0.01
268 256 0.36
269 448 0.63
270 8 0.01
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (268 bp):
TTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTTACTCAG
GGAAGATCAAATATTGAAAGAGAGGGATCTGTTCCGCTTCTTCTTGAGGGAAAATCAGATATGGG
GACATTGATTCATTCCACTATTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTATTAC
TCAGGGAATATCAAATCTTGAAAGAGAGTGATTTGTTTCGCTTCTTCTTGAGGGAAAATCAGATT
TGGGGACG
Found at i:1447322 original size:403 final size:404
Alignment explanation
Indices: 1446576--1447690 Score: 1478
Period size: 403 Copynumber: 2.8 Consensus size: 404
1446566 ATCAAGAAGA
* * * * * * *
1446576 ATTGATTCTTTCCACTATTCTTTAGGGAAGATTGAATCCAGGTAGACTTGTTCCACTGTTAGTCA
1 ATTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTATTACTCA
* * *
1446641 GGGAAGATTAAATATTGG-AAGAGAGGGATCTA-TTCTGCTTATTTTTTAGGGAAAATAAGATTT
66 GGGAAGATCAAATATTGGAAAGAGAGGGATCTATTTC-GCTTTTTTTTTAGGGAAAATCAGATTT
* * * * *
1446704 GGGGACGTTGATTCATTCTAATATTCTACAGGGAAAATTGAATCGAGGCAGACTTGTTCCACTAT
130 GGGGACGTTGATTTATTCTAATGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGT
* * *
1446769 TACTCAGGGAATATAAAATCTTGAAAGAGAGGAATTTGTTTCGCTT-TTTCTTGAGAGAAAATCA
195 TACTCAGGGAATATCAAATCTTGAAAGAGAGGGATTTGTTCCGCTTCTTT-TTGAGAGAAAATCA
* * *
1446833 AATCTGGGGATGTTGATTCATTCCATTGTTCTTCAGGGAAGATTGAATCGAGGTAGACTTGTTCC
259 GATCTGGGGACGTTGATTCATTCCATTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCC
* * *
1446898 ACTTTTACTCAAGGAATATCAAATCTT-AAAGGAGAGGGATCTGTTCCGCTTCTTCTTG-GGGGA
324 ACTGTTACTCAAGGAATATCAAATCTTGAAA-GAGAGGGATATGTTCCGCTTCTTCTTGAGGGAA
* * * *
1446961 AAATCATATCTATAAAT
388 AAATCAGATATAGAAAC
* *
1446978 ATTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGACAGACTTGTTCCACTATTCCTCA
1 ATTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTATTACTCA
*
1447043 GGGAAGATCAAAT-TTGGAAAGAGAGTGATCTATTTCGCTTCTTTTTTTAGGGAAAATCAGATTT
66 GGGAAGATCAAATATTGGAAAGAGAGGGATCTATTTCGCTT-TTTTTTTAGGGAAAATCAGATTT
*
1447107 GGGGACGTTGATTTATTCTATTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGT
130 GGGGACGTTGATTTATTCTAATGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGT
* *
1447172 TCCTCTA-GGAAGATCAAAT-TTGGAAAGAGAGGGATTTGTTCCGCTTCTTTTTGAGAGAAAATC
195 TACTC-AGGGAATATCAAATCTT-GAAAGAGAGGGATTTGTTCCGCTTCTTTTTGAGAGAAAATC
* * * * *
1447235 AGATGTGGGGACATTGTTTCATTCCATTATTCTTCAGGGAAGATTGAATCGAGGCATACTTGTTC
258 AGATCTGGGGACGTTGATTCATTCCATTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTC
* ***
1447300 CACTGTTCCT-AAGGGAATATCAAATCTTGAAAGAGAGGGATATGTTTTTCTTCTTCTTGAGGGA
323 CACTGTTACTCAA-GGAATATCAAATCTTGAAAGAGAGGGATATGTTCCGCTTCTTCTTGAGGGA
* **
1447364 AAAATCAGATATGGGGAC
387 AAAATCAGATATAGAAAC
1447382 ATTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTATTACTCA
1 ATTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTATTACTCA
* * * * * * *
1447447 GGGAATATCAAATATT-GAAAAAGAGGGATATGTTTTGCTTTTTCTTTAGGGAAAATCAGATATG
66 GGGAAGATCAAATATTGGAAAGAGAGGGATCTATTTCGCTTTTTTTTTAGGGAAAATCAGATTTG
* * ** *
1447511 GGGACGTTGATTTATT-TCACTGTTATTCAGGGAAGATTGAATTAAGGCAGATTTGTTCCACTGT
131 GGGACGTTGATTTATTCT-AATGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGT
* * * *
1447575 TACTCAGGGAATATCAAATCTTGAAAGAGATGGATTTGTTCCGCTTCTTCTTGAGGGAAAATTAG
195 TACTCAGGGAATATCAAATCTTGAAAGAGAGGGATTTGTTCCGCTTCTTTTTGAGAGAAAATCAG
* * * * *
1447640 ATTTGGGGACGTTGATTCATTCGACTGTTATTCAGAGAAGATTGAATCGAG
260 ATCTGGGGACGTTGATTCATTCCATTGTTCTTCAGGGAAGATTGAATCGAG
1447691 TTTGATTTTC
Statistics
Matches: 625, Mismatches: 75, Indels: 25
0.86 0.10 0.03
Matches are distributed among these distances:
401 4 0.01
402 91 0.15
403 411 0.66
404 117 0.19
405 2 0.00
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (404 bp):
ATTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTATTACTCA
GGGAAGATCAAATATTGGAAAGAGAGGGATCTATTTCGCTTTTTTTTTAGGGAAAATCAGATTTG
GGGACGTTGATTTATTCTAATGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTT
ACTCAGGGAATATCAAATCTTGAAAGAGAGGGATTTGTTCCGCTTCTTTTTGAGAGAAAATCAGA
TCTGGGGACGTTGATTCATTCCATTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCAC
TGTTACTCAAGGAATATCAAATCTTGAAAGAGAGGGATATGTTCCGCTTCTTCTTGAGGGAAAAA
TCAGATATAGAAAC
Found at i:1447698 original size:134 final size:134
Alignment explanation
Indices: 1446577--1447690 Score: 1282
Period size: 134 Copynumber: 8.3 Consensus size: 134
1446567 TCAAGAAGAA
* * * * * *
1446577 TTGATTCTTTCCACTATTCTTTAGGGAAGATTGAATCCAGGTAGACTTGTTCCACTGTTAGTCAG
1 TTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTTACTCAG
* * * * * * * * * *
1446642 GGAAGATTAAATATTGGAAGAGAGGGATCTATTCTGCTTATTTTTTAGGGAAAATAAGATTTGGG
66 GGAATATCAAATCTTGAAAGAGAGGGATCTGTTCCGCTTCTTCTTGAGGGAAAATCAGATTTGGG
1446707 GACG
131 GACG
* * * * * *
1446711 TTGATTCATTCTAATATTCTACAGGGAAAATTGAATCGAGGCAGACTTGTTCCACTATTACTCAG
1 TTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTTACTCAG
* * * * * * * *
1446776 GGAATATAAAATCTTGAAAGAGAGGAATTTGTTTCGCTTTTTCTTGAGAGAAAATCAAATCTGGG
66 GGAATATCAAATCTTGAAAGAGAGGGATCTGTTCCGCTTCTTCTTGAGGGAAAATCAGATTTGGG
*
1446841 GATG
131 GACG
* * * *
1446845 TTGATTCATTCCATTGTTCTTCAGGGAAGATTGAATCGAGGTAGACTTGTTCCACTTTTACTCAA
1 TTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTTACTCAG
* * * **
1446910 GGAATATCAAATCTT-AAAGGAGAGGGATCTGTTCCGCTTCTTCTTGGGGGAAAATCATATCTAT
66 GGAATATCAAATCTTGAAA-GAGAGGGATCTGTTCCGCTTCTTCTTGAGGGAAAATCAGATTTGG
** **
1446974 AAATA
130 GGACG
* * *
1446979 TTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGACAGACTTGTTCCACTATTCCTCAG
1 TTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTTACTCAG
* * * * * *
1447044 GGAAGATCAAAT-TTGGAAAGAGAGTGATCTATTTCGCTTCTTTTTTTAGGGAAAATCAGATTTG
66 GGAATATCAAATCTT-GAAAGAGAGGGATCTGTTCCGCTTC-TTCTTGAGGGAAAATCAGATTTG
1447108 GGGACG
129 GGGACG
* * * *
1447114 TTGATTTATTCTATTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTTCCTCTA
1 TTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTTACTC-A
* * * * *
1447179 -GGAAGATCAAAT-TTGGAAAGAGAGGGATTTGTTCCGCTTCTTTTTGAGAGAAAATCAGATGTG
65 GGGAATATCAAATCTT-GAAAGAGAGGGATCTGTTCCGCTTCTTCTTGAGGGAAAATCAGATTTG
*
1447242 GGGACA
129 GGGACG
* * * * * *
1447248 TTGTTTCATTCCATTATTCTTCAGGGAAGATTGAATCGAGGCATACTTGTTCCACTGTTCCTAAG
1 TTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTTACTCAG
* *** *
1447313 GGAATATCAAATCTTGAAAGAGAGGGATATGTTTTTCTTCTTCTTGAGGGAAAAATCAGATATGG
66 GGAATATCAAATCTTGAAAGAGAGGGATCTGTTCCGCTTCTTCTTGAGGG-AAAATCAGATTTGG
*
1447378 GGACA
130 GGACG
*
1447383 TTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTATTACTCAG
1 TTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTTACTCAG
* * * ** * * *
1447448 GGAATATCAAATATTGAAAAAGAGGGATATGTTTTGCTTTTTCTTTAGGGAAAATCAGATATGGG
66 GGAATATCAAATCTTGAAAGAGAGGGATCTGTTCCGCTTCTTCTTGAGGGAAAATCAGATTTGGG
1447513 GACG
131 GACG
* * * ** *
1447517 TTGATTTATTTCACTGTTATTCAGGGAAGATTGAATTAAGGCAGATTTGTTCCACTGTTACTCAG
1 TTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTTACTCAG
* * *
1447582 GGAATATCAAATCTTGAAAGAGATGGATTTGTTCCGCTTCTTCTTGAGGGAAAATTAGATTTGGG
66 GGAATATCAAATCTTGAAAGAGAGGGATCTGTTCCGCTTCTTCTTGAGGGAAAATCAGATTTGGG
1447647 GACG
131 GACG
* * *
1447651 TTGATTCATTCGACTGTTATTCAGAGAAGATTGAATCGAG
1 TTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAG
1447691 TTTGATTTTC
Statistics
Matches: 840, Mismatches: 132, Indels: 16
0.85 0.13 0.02
Matches are distributed among these distances:
133 6 0.01
134 595 0.71
135 238 0.28
136 1 0.00
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (134 bp):
TTGATTCATTCCACTGTTCTTCAGGGAAGATTGAATCGAGGCAGACTTGTTCCACTGTTACTCAG
GGAATATCAAATCTTGAAAGAGAGGGATCTGTTCCGCTTCTTCTTGAGGGAAAATCAGATTTGGG
GACG
Found at i:1451152 original size:17 final size:17
Alignment explanation
Indices: 1451132--1451169 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
1451122 GGAAGTCAAC
*
1451132 GGTCAACGGTCGAGTCG
1 GGTCAACAGTCGAGTCG
*
1451149 GGTCAACAGTCGGGTCG
1 GGTCAACAGTCGAGTCG
1451166 GGTC
1 GGTC
1451170 GGTCAGACCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.16, C:0.24, G:0.42, T:0.18
Consensus pattern (17 bp):
GGTCAACAGTCGAGTCG
Found at i:1451181 original size:9 final size:9
Alignment explanation
Indices: 1451169--1451220 Score: 59
Period size: 9 Copynumber: 5.4 Consensus size: 9
1451159 CGGGTCGGGT
*
1451169 CGGTCAGAC
1 CGGTCAAAC
*
1451178 CGGTTCAGAC
1 CGG-TCAAAC
1451188 CGGTCAAAC
1 CGGTCAAAC
1451197 CGGTTCAAAAC
1 CGG-TC-AAAC
1451208 CGGTCAAAC
1 CGGTCAAAC
1451217 CGGT
1 CGGT
1451221 TTTCAGCCAC
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
9 19 0.49
10 13 0.33
11 7 0.18
ACGTcount: A:0.27, C:0.31, G:0.27, T:0.15
Consensus pattern (9 bp):
CGGTCAAAC
Found at i:1451185 original size:10 final size:10
Alignment explanation
Indices: 1451176--1451221 Score: 60
Period size: 9 Copynumber: 4.7 Consensus size: 10
1451166 GGTCGGTCAG
*
1451176 ACCGGTTCAG
1 ACCGGTTCAA
1451186 ACCGG-TCAA
1 ACCGGTTCAA
1451195 ACCGGTTCAAA
1 ACCGGTTC-AA
1451206 ACCGG-TCAA
1 ACCGGTTCAA
1451215 ACCGGTT
1 ACCGGTT
1451222 TTCAGCCACT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
9 15 0.47
10 10 0.31
11 7 0.22
ACGTcount: A:0.28, C:0.30, G:0.24, T:0.17
Consensus pattern (10 bp):
ACCGGTTCAA
Found at i:1451211 original size:20 final size:19
Alignment explanation
Indices: 1451169--1451221 Score: 79
Period size: 20 Copynumber: 2.7 Consensus size: 19
1451159 CGGGTCGGGT
* *
1451169 CGGTCAGACCGGTTCAGAC
1 CGGTCAAACCGGTTCAAAC
1451188 CGGTCAAACCGGTTCAAAAC
1 CGGTCAAACCGGTTC-AAAC
1451208 CGGTCAAACCGGTT
1 CGGTCAAACCGGTT
1451222 TTCAGCCACT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 14 0.45
20 17 0.55
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.17
Consensus pattern (19 bp):
CGGTCAAACCGGTTCAAAC
Found at i:1458350 original size:7 final size:7
Alignment explanation
Indices: 1458338--1458374 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
1458328 GTCAAAGGAA
1458338 GTCAATG
1 GTCAATG
1458345 GTCAATG
1 GTCAATG
1458352 GTC-ATG
1 GTCAATG
1458358 GTCAATG
1 GTCAATG
*
1458365 GTCAACG
1 GTCAATG
1458372 GTC
1 GTC
1458375 GGGTCGGGTC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
6 6 0.21
7 22 0.79
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (7 bp):
GTCAATG
Found at i:1458360 original size:13 final size:13
Alignment explanation
Indices: 1458342--1458368 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1458332 AAGGAAGTCA
1458342 ATGGTCAATGGTC
1 ATGGTCAATGGTC
1458355 ATGGTCAATGGTC
1 ATGGTCAATGGTC
1458368 A
1 A
1458369 ACGGTCGGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.30
Consensus pattern (13 bp):
ATGGTCAATGGTC
Found at i:1458407 original size:10 final size:10
Alignment explanation
Indices: 1458394--1458467 Score: 82
Period size: 10 Copynumber: 7.4 Consensus size: 10
1458384 CAGGTCGGAT
1458394 CGGTCAGAAC
1 CGGTCAGAAC
1458404 CGGTC-GAAAC
1 CGGTCAG-AAC
1458414 CGGTCAGAAC
1 CGGTCAGAAC
1458424 CGGTC-GAAAC
1 CGGTCAG-AAC
*
1458434 CGGTCAAAAC
1 CGGTCAGAAC
*
1458444 CGGTTCAAAAC
1 CGG-TCAGAAC
1458455 CGGTCA-AAC
1 CGGTCAGAAC
1458464 CGGT
1 CGGT
1458468 TTTGAGCCAC
Statistics
Matches: 58, Mismatches: 1, Indels: 11
0.83 0.01 0.16
Matches are distributed among these distances:
9 9 0.16
10 38 0.66
11 11 0.19
ACGTcount: A:0.31, C:0.30, G:0.27, T:0.12
Consensus pattern (10 bp):
CGGTCAGAAC
Found at i:1458468 original size:20 final size:20
Alignment explanation
Indices: 1458394--1458467 Score: 114
Period size: 20 Copynumber: 3.7 Consensus size: 20
1458384 CAGGTCGGAT
1458394 CGGTCAGAACCGGTCGAAAC
1 CGGTCAGAACCGGTCGAAAC
1458414 CGGTCAGAACCGGTCGAAAC
1 CGGTCAGAACCGGTCGAAAC
* *
1458434 CGGTCAAAACCGGTTCAAAAC
1 CGGTCAGAACCGG-TCGAAAC
1458455 CGGTCA-AACCGGT
1 CGGTCAGAACCGGT
1458468 TTTGAGCCAC
Statistics
Matches: 51, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
19 1 0.02
20 38 0.75
21 12 0.24
ACGTcount: A:0.31, C:0.30, G:0.27, T:0.12
Consensus pattern (20 bp):
CGGTCAGAACCGGTCGAAAC
Found at i:1464139 original size:30 final size:30
Alignment explanation
Indices: 1464105--1464165 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
1464095 TATGCTTGAG
* * * *
1464105 CCTTTCAATCGACTACTATCACCACTGCCT
1 CCTTTCAAACAACTACTACCACCACTACCT
1464135 CCTTTCAAACAACTACTACCACCACTACCT
1 CCTTTCAAACAACTACTACCACCACTACCT
1464165 C
1 C
1464166 GGCCATCCAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.43, G:0.03, T:0.26
Consensus pattern (30 bp):
CCTTTCAAACAACTACTACCACCACTACCT
Found at i:1464457 original size:22 final size:22
Alignment explanation
Indices: 1464429--1464477 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
1464419 TTACAAAGTA
1464429 AATGAGTTATTGTTCGTAGTTG
1 AATGAGTTATTGTTCGTAGTTG
1464451 AATGAGTTATTGTTCGTAGTTG
1 AATGAGTTATTGTTCGTAGTTG
1464473 AATGA
1 AATGA
1464478 CCAAACAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.27, C:0.04, G:0.27, T:0.43
Consensus pattern (22 bp):
AATGAGTTATTGTTCGTAGTTG
Found at i:1471413 original size:22 final size:23
Alignment explanation
Indices: 1471385--1471439 Score: 85
Period size: 22 Copynumber: 2.4 Consensus size: 23
1471375 CTCTTCTTCT
*
1471385 TCTTCTTCTTCAACCCAA-CCCA
1 TCTTCTTCCTCAACCCAACCCCA
*
1471407 TCTTCTTCCTCAACCCAACCCCG
1 TCTTCTTCCTCAACCCAACCCCA
1471430 TCTTCTTCCT
1 TCTTCTTCCT
1471440 TAACATCATT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
22 17 0.57
23 13 0.43
ACGTcount: A:0.16, C:0.47, G:0.02, T:0.35
Consensus pattern (23 bp):
TCTTCTTCCTCAACCCAACCCCA
Found at i:1472776 original size:23 final size:23
Alignment explanation
Indices: 1472746--1472798 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
1472736 GATGGTGTTA
1472746 AGGAAGAAGACGGAGTTGGGTTG
1 AGGAAGAAGACGGAGTTGGGTTG
* *
1472769 AGGAAGAAGATGGGGTTGGGTTG
1 AGGAAGAAGACGGAGTTGGGTTG
*
1472792 AAGAAGA
1 AGGAAGA
1472799 GGAGTCGGTC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.34, C:0.02, G:0.47, T:0.17
Consensus pattern (23 bp):
AGGAAGAAGACGGAGTTGGGTTG
Found at i:1477159 original size:23 final size:23
Alignment explanation
Indices: 1477129--1477184 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
1477119 GACCGACTCT
*
1477129 TCTTCTTCTTCAACCAAACCCCA
1 TCTTCTTCCTCAACCAAACCCCA
*
1477152 TCTTCTTCCTCAACCCAACCCCA
1 TCTTCTTCCTCAACCAAACCCCA
1477175 TCTTCTTCCT
1 TCTTCTTCCT
1477185 TAACACCATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.20, C:0.46, G:0.00, T:0.34
Consensus pattern (23 bp):
TCTTCTTCCTCAACCAAACCCCA
Found at i:1479737 original size:12 final size:11
Alignment explanation
Indices: 1479705--1479737 Score: 50
Period size: 10 Copynumber: 3.0 Consensus size: 11
1479695 ATTCTCTTCA
1479705 TCTTCTCATTT
1 TCTTCTCATTT
1479716 TCTT-TCATTT
1 TCTTCTCATTT
1479726 TCTTCCTCATTT
1 TCTT-CTCATTT
1479738 CTTATTTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 10 0.50
11 4 0.20
12 6 0.30
ACGTcount: A:0.09, C:0.27, G:0.00, T:0.64
Consensus pattern (11 bp):
TCTTCTCATTT
Found at i:1481924 original size:171 final size:172
Alignment explanation
Indices: 1481639--1481982 Score: 681
Period size: 171 Copynumber: 2.0 Consensus size: 172
1481629 CACAGTAAAA
1481639 CCATTGTTGCATTAAGATAATATACAGTAGAGTTAGTATGGCATTCATATAATGCACAGTAAAGC
1 CCATTGTTGCATTAAGATAATATACAGTAGAGTTAGTATGGCATTCATATAATGCACAGTAAAGC
1481704 CAATATCACATTTAGATAACGTGTAACAGATTCAGTCATTAGGGTTAGAGA-CCCTACTTCAAAT
66 CAATATCACATTTAGATAACGTGTAACAGATTCAGTCATTAGGGTTAGAGACCCCTACTTCAAAT
1481768 ATAGAACCGCTAAGCCTTAAGTAGGTAACACTTGATCTAGAT
131 ATAGAACCGCTAAGCCTTAAGTAGGTAACACTTGATCTAGAT
1481810 CCATTGTTGCATTAAGATAATATACAGTAGAGTTAGTATGGCATTCATATAATGCACAGTAAAGC
1 CCATTGTTGCATTAAGATAATATACAGTAGAGTTAGTATGGCATTCATATAATGCACAGTAAAGC
1481875 CAATATCACATTTAGATAACGTGTAACAGATTCAGTCATTAGGGTTAGAGACCCCTACTTCAAAT
66 CAATATCACATTTAGATAACGTGTAACAGATTCAGTCATTAGGGTTAGAGACCCCTACTTCAAAT
1481940 ATAGAACCGCTAAGCCTTAAGTAGGTAACACTTGATCTAGAT
131 ATAGAACCGCTAAGCCTTAAGTAGGTAACACTTGATCTAGAT
1481982 C
1 C
1481983 ATGCATGTAC
Statistics
Matches: 172, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
171 116 0.67
172 56 0.33
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.29
Consensus pattern (172 bp):
CCATTGTTGCATTAAGATAATATACAGTAGAGTTAGTATGGCATTCATATAATGCACAGTAAAGC
CAATATCACATTTAGATAACGTGTAACAGATTCAGTCATTAGGGTTAGAGACCCCTACTTCAAAT
ATAGAACCGCTAAGCCTTAAGTAGGTAACACTTGATCTAGAT
Found at i:1485088 original size:26 final size:26
Alignment explanation
Indices: 1485048--1485106 Score: 109
Period size: 26 Copynumber: 2.3 Consensus size: 26
1485038 GAGGATAATG
*
1485048 AAGTTGCATGTCCTCCTCGGTTTCTA
1 AAGTTGCATGCCCTCCTCGGTTTCTA
1485074 AAGTTGCATGCCCTCCTCGGTTTCTA
1 AAGTTGCATGCCCTCCTCGGTTTCTA
1485100 AAGTTGC
1 AAGTTGC
1485107 CTCATCCACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.17, C:0.27, G:0.20, T:0.36
Consensus pattern (26 bp):
AAGTTGCATGCCCTCCTCGGTTTCTA
Found at i:1485352 original size:25 final size:25
Alignment explanation
Indices: 1485297--1485363 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
1485287 CCCTCATCCT
1485297 CATCCCCGTTTAAAAAACCTGTACC
1 CATCCCCGTTTAAAAAACCTGTACC
*
1485322 TATCCCCGTTTAAAAAA-CTCGTACC
1 CATCCCCGTTTAAAAAACCT-GTACC
* * *
1485347 CGTCCCTGCTTAAAAAA
1 CATCCCCGTTTAAAAAA
1485364 TTGTAGAGAT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
24 2 0.06
25 34 0.94
ACGTcount: A:0.33, C:0.33, G:0.09, T:0.25
Consensus pattern (25 bp):
CATCCCCGTTTAAAAAACCTGTACC
Found at i:1485697 original size:21 final size:21
Alignment explanation
Indices: 1485671--1485849 Score: 204
Period size: 21 Copynumber: 8.6 Consensus size: 21
1485661 GTTTCTAGAT
*
1485671 TCGCAATGCGAACTTTGACTA
1 TCGCAATGCGAACTTGGACTA
**
1485692 TCGCAACACGAACTTGGACTA
1 TCGCAATGCGAACTTGGACTA
1485713 TCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTGGACTA
* *
1485734 TCGCAATGCGAA-TATGTA-AA
1 TCGCAATGCGAACT-TGGACTA
* *
1485754 TCGCAATGCGATA-GTCGACTA
1 TCGCAATGCGA-ACTTGGACTA
* *
1485775 TCGCAATGCGATA-GTCGACTA
1 TCGCAATGCGA-ACTTGGACTA
* *
1485796 TTGCAATGCAAACTTGGACTA
1 TCGCAATGCGAACTTGGACTA
1485817 TCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTGGACTA
1485838 TCGCAATGCGAA
1 TCGCAATGCGAA
1485850 TATGTAAATC
Statistics
Matches: 137, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
20 16 0.12
21 121 0.88
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (21 bp):
TCGCAATGCGAACTTGGACTA
Found at i:1485795 original size:83 final size:83
Alignment explanation
Indices: 1485708--1485875 Score: 227
Period size: 83 Copynumber: 2.0 Consensus size: 83
1485698 CACGAACTTG
* *
1485708 GACTATCGCAATGCGAACTTGGACTATCGCAATGCGAA-TATGTA-AATCGCAATGCG-ATA-GT
1 GACTATCGCAATGCAAACTTGGACTATCGCAATGCGAACT-TGGACAATCGCAATGCGAATATGT
*
1485769 CGACTATCGCAATGCGATAGTC
65 --A-AATCGCAATGCGATAGTC
* *
1485791 GACTATTGCAATGCAAACTTGGACTATCGCAATGCGAACTTGGACTATCGCAATGCGAATATGTA
1 GACTATCGCAATGCAAACTTGGACTATCGCAATGCGAACTTGGACAATCGCAATGCGAATATGTA
1485856 AATCGCAATGCGATAGTC
66 AATCGCAATGCGATAGTC
1485874 GA
1 GA
1485876 AGTTCGCATT
Statistics
Matches: 76, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
83 58 0.76
84 13 0.17
85 3 0.04
86 2 0.03
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.24
Consensus pattern (83 bp):
GACTATCGCAATGCAAACTTGGACTATCGCAATGCGAACTTGGACAATCGCAATGCGAATATGTA
AATCGCAATGCGATAGTC
Found at i:1485810 original size:104 final size:104
Alignment explanation
Indices: 1485702--1485896 Score: 356
Period size: 104 Copynumber: 1.9 Consensus size: 104
1485692 TCGCAACACG
1485702 AACTTGGACTATCGCAATGCGAACTTGGACTATCGCAATGCGAATATGTAAATCGCAATGCGATA
1 AACTTGGACTATCGCAATGCGAACTTGGACTATCGCAATGCGAATATGTAAATCGCAATGCGATA
1485767 GTCG-ACTATCGCAATGCGATAGTCGACTATTGCAATGCA
66 GTCGAACT-TCGCAATGCGATAGTCGACTATTGCAATGCA
1485806 AACTTGGACTATCGCAATGCGAACTTGGACTATCGCAATGCGAATATGTAAATCGCAATGCGATA
1 AACTTGGACTATCGCAATGCGAACTTGGACTATCGCAATGCGAATATGTAAATCGCAATGCGATA
* *
1485871 GTCGAAGTTCGCATTGCGATAGTCGA
66 GTCGAACTTCGCAATGCGATAGTCGA
1485897 AGTTCACATT
Statistics
Matches: 88, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
104 86 0.98
105 2 0.02
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (104 bp):
AACTTGGACTATCGCAATGCGAACTTGGACTATCGCAATGCGAATATGTAAATCGCAATGCGATA
GTCGAACTTCGCAATGCGATAGTCGACTATTGCAATGCA
Found at i:1485888 original size:21 final size:20
Alignment explanation
Indices: 1485858--1486015 Score: 149
Period size: 21 Copynumber: 7.6 Consensus size: 20
1485848 AATATGTAAA
*
1485858 TCGCAATGCGATAGTCGAAGT
1 TCGCATTGCGATAGTC-AAGT
1485879 TCGCATTGCGATAGTCGAAGT
1 TCGCATTGCGATAGTC-AAGT
*
1485900 TCACATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGT-CAAGT
* *
1485921 TCGCATTGCGGTATTTCAAGT
1 TCGCATTGCGATA-GTCAAGT
* *
1485942 TCGCATTGCGATAGTCGACT
1 TCGCATTGCGATAGTCAAGT
* *
1485962 ATCGCATTGCAAT-TTACATA-T
1 -TCGCATTGCGATAGT-CA-AGT
1485983 TCGCATTGCGATAGTTCAAGT
1 TCGCATTGCGATAG-TCAAGT
*
1486004 TCGCGTTGCGAT
1 TCGCATTGCGAT
1486016 TTATTCCAAA
Statistics
Matches: 114, Mismatches: 15, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
20 17 0.15
21 93 0.82
22 4 0.04
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (20 bp):
TCGCATTGCGATAGTCAAGT
Found at i:1485945 original size:63 final size:62
Alignment explanation
Indices: 1485858--1486015 Score: 178
Period size: 63 Copynumber: 2.5 Consensus size: 62
1485848 AATATGTAAA
* * * *
1485858 TCGCAATGCGATAG-TCGAAGTTCGCATTGCGATAGTCGAAGT-TCACATTGCGATAGTCCA-AG
1 TCGCATTGCGATAGTTC-AAGTTCGCATTGCGATAGTCG-ACTATCACATTGCAAT-GTACATA-
1485920 T
62 T
* * * *
1485921 TCGCATTGCGGTATTTCAAGTTCGCATTGCGATAGTCGACTATCGCATTGCAATTTACATAT
1 TCGCATTGCGATAGTTCAAGTTCGCATTGCGATAGTCGACTATCACATTGCAATGTACATAT
*
1485983 TCGCATTGCGATAGTTCAAGTTCGCGTTGCGAT
1 TCGCATTGCGATAGTTCAAGTTCGCATTGCGAT
1486016 TTATTCCAAA
Statistics
Matches: 81, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
62 36 0.44
63 43 0.53
64 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (62 bp):
TCGCATTGCGATAGTTCAAGTTCGCATTGCGATAGTCGACTATCACATTGCAATGTACATAT
Found at i:1486044 original size:19 final size:20
Alignment explanation
Indices: 1485988--1486044 Score: 53
Period size: 21 Copynumber: 2.8 Consensus size: 20
1485978 CATATTCGCA
* *
1485988 TTGCGATAGTTCAAGTTCGCG
1 TTGCGATAGTCCAAATTC-CG
*
1486009 TTGCGATTTATTCCAAATT-CG
1 TTGCGA--TAGTCCAAATTCCG
1486030 TTGCGATAGTCCAAA
1 TTGCGATAGTCCAAA
1486045 ATCGCAACGA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
19 8 0.27
21 14 0.47
23 8 0.27
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (20 bp):
TTGCGATAGTCCAAATTCCG
Found at i:1486810 original size:19 final size:19
Alignment explanation
Indices: 1486786--1486984 Score: 146
Period size: 19 Copynumber: 9.7 Consensus size: 19
1486776 CGTTGCGATT
1486786 TTGGACTATCGCAACGAAC
1 TTGGACTATCGCAACGAAC
* *
1486805 TTGGACTATCGCAACAAAT
1 TTGGACTATCGCAACGAAC
*
1486824 TTGGAATAAATCGCAACGAAC
1 TTGGACT--ATCGCAACGAAC
1486845 TTGGACTATCGCAACGAAC
1 TTGGACTATCGCAACGAAC
* *
1486864 TTGGAATAAATCACAACGCGAAC
1 TTGGACT--ATCGCAA--CGAAC
* ** *
1486887 TTCGACTATCGCAACTTAT
1 TTGGACTATCGCAACGAAC
*
1486906 TTGGAATAAATCGCAACGTGAAC
1 TTGGACT--ATCGCAAC--GAAC
* *
1486929 TTCGACTATTGCAACGAAC
1 TTGGACTATCGCAACGAAC
* *
1486948 TTGGAATAAATCGTAACACGAAC
1 TTGGACT--ATCG-CA-ACGAAC
1486971 TTGGACTATCGCAA
1 TTGGACTATCGCAA
1486985 TGCGAATATG
Statistics
Matches: 138, Mismatches: 28, Indels: 28
0.71 0.14 0.14
Matches are distributed among these distances:
19 58 0.42
20 1 0.01
21 50 0.36
22 1 0.01
23 28 0.20
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.24
Consensus pattern (19 bp):
TTGGACTATCGCAACGAAC
Found at i:1486899 original size:42 final size:42
Alignment explanation
Indices: 1486793--1486984 Score: 248
Period size: 42 Copynumber: 4.7 Consensus size: 42
1486783 ATTTTGGACT
* *
1486793 ATCGCAA--CGAACTTGGACTATCGCAACAAATTTGGAATAA
1 ATCGCAACGCGAACTTGGACTATCGCAACGAACTTGGAATAA
1486833 ATCGCAA--CGAACTTGGACTATCGCAACGAACTTGGAATAA
1 ATCGCAACGCGAACTTGGACTATCGCAACGAACTTGGAATAA
* * ** *
1486873 ATCACAACGCGAACTTCGACTATCGCAACTTATTTGGAATAA
1 ATCGCAACGCGAACTTGGACTATCGCAACGAACTTGGAATAA
* * *
1486915 ATCGCAACGTGAACTTCGACTATTGCAACGAACTTGGAATAA
1 ATCGCAACGCGAACTTGGACTATCGCAACGAACTTGGAATAA
* *
1486957 ATCGTAACACGAACTTGGACTATCGCAA
1 ATCGCAACGCGAACTTGGACTATCGCAA
1486985 TGCGAATATG
Statistics
Matches: 132, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
40 44 0.33
42 88 0.67
ACGTcount: A:0.37, C:0.22, G:0.18, T:0.23
Consensus pattern (42 bp):
ATCGCAACGCGAACTTGGACTATCGCAACGAACTTGGAATAA
Found at i:1486970 original size:84 final size:82
Alignment explanation
Indices: 1486799--1486984 Score: 282
Period size: 84 Copynumber: 2.2 Consensus size: 82
1486789 GACTATCGCA
*
1486799 ACGAACTTGGACTATCGCAACAAATTTGGAATAAATCGCAACGAACTTGGACTATCGCAACGAAC
1 ACGAACTTGGACTATCGCAACAAATTTGGAATAAATCGCAACGAACTTCGACTATCGCAACGAAC
1486864 TTGGAATAAATCACAAC
66 TTGGAATAAATCACAAC
* * ** *
1486881 GCGAACTTCGACTATCGCAACTTATTTGGAATAAATCGCAACGTGAACTTCGACTATTGCAACGA
1 ACGAACTTGGACTATCGCAACAAATTTGGAATAAATCGCAAC--GAACTTCGACTATCGCAACGA
**
1486946 ACTTGGAATAAATCGTAAC
64 ACTTGGAATAAATCACAAC
1486965 ACGAACTTGGACTATCGCAA
1 ACGAACTTGGACTATCGCAA
1486985 TGCGAATATG
Statistics
Matches: 92, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
82 38 0.41
84 54 0.59
ACGTcount: A:0.37, C:0.22, G:0.18, T:0.23
Consensus pattern (82 bp):
ACGAACTTGGACTATCGCAACAAATTTGGAATAAATCGCAACGAACTTCGACTATCGCAACGAAC
TTGGAATAAATCACAAC
Found at i:1488752 original size:12 final size:12
Alignment explanation
Indices: 1488737--1488762 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
1488727 ATGACTATTA
1488737 CTAATTATGTTT
1 CTAATTATGTTT
1488749 CTAATTATGTTT
1 CTAATTATGTTT
1488761 CT
1 CT
1488763 GTTACTGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.12, G:0.08, T:0.58
Consensus pattern (12 bp):
CTAATTATGTTT
Found at i:1489328 original size:20 final size:20
Alignment explanation
Indices: 1489303--1489341 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
1489293 ATTTTGAATG
*
1489303 TGTAGTATCGATACTCTAGC
1 TGTAGTATCAATACTCTAGC
1489323 TGTAGTATCAATACTCTAG
1 TGTAGTATCAATACTCTAG
1489342 GGTAAATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (20 bp):
TGTAGTATCAATACTCTAGC
Found at i:1489379 original size:19 final size:19
Alignment explanation
Indices: 1489352--1489459 Score: 164
Period size: 19 Copynumber: 5.6 Consensus size: 19
1489342 GGTAAATTTT
1489352 GATACTCTTGGAAAGTATC
1 GATACTCTTGGAAAGTATC
*
1489371 GATAGTCTTGGAAAGTATC
1 GATACTCTTGGAAAGTATC
*
1489390 GATACTATTGGAAAGTATC
1 GATACTCTTGGAAAGTATC
1489409 GATACTCTTGGAAAGTATC
1 GATACTCTTGGAAAGTATC
1489428 GATACT-TTGAGGTAAAGTATC
1 GATACTCTT--GG-AAAGTATC
1489449 GATACTCTTGG
1 GATACTCTTGG
1489460 CCTGAAATCC
Statistics
Matches: 81, Mismatches: 4, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
18 2 0.02
19 59 0.73
20 4 0.05
21 14 0.17
22 2 0.02
ACGTcount: A:0.31, C:0.13, G:0.23, T:0.32
Consensus pattern (19 bp):
GATACTCTTGGAAAGTATC
Found at i:1493082 original size:20 final size:21
Alignment explanation
Indices: 1493059--1493098 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
1493049 ACTCTGAGTT
1493059 TAATAAAC-TGAATACATAAG
1 TAATAAACATGAATACATAAG
*
1493079 TAATGAACTATGAATACATA
1 TAATAAAC-ATGAATACATA
1493099 TGTCCACTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
22 10 0.59
ACGTcount: A:0.53, C:0.10, G:0.10, T:0.28
Consensus pattern (21 bp):
TAATAAACATGAATACATAAG
Found at i:1494575 original size:19 final size:19
Alignment explanation
Indices: 1494546--1494624 Score: 90
Period size: 19 Copynumber: 4.1 Consensus size: 19
1494536 TTTTATTGCT
1494546 GAAAGTATCGATACTCTTG
1 GAAAGTATCGATACTCTTG
1494565 GAATA-TATCGATACT-TTGAG
1 GAA-AGTATCGATACTCTT--G
1494585 GTAAAGTATCGATACTCTTG
1 G-AAAGTATCGATACTCTTG
* *
1494605 AAAAGTATCAATACTCTTG
1 GAAAGTATCGATACTCTTG
1494624 G
1 G
1494625 GCTAAAATCC
Statistics
Matches: 51, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
18 2 0.04
19 30 0.59
20 5 0.10
21 12 0.24
22 2 0.04
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.33
Consensus pattern (19 bp):
GAAAGTATCGATACTCTTG
Found at i:1499357 original size:90 final size:90
Alignment explanation
Indices: 1499250--1499417 Score: 257
Period size: 90 Copynumber: 1.9 Consensus size: 90
1499240 ATATTGATTC
*
1499250 GAGAGAAAATGGTAATATCCAATTA-TTTCAAATCAAGAATAAATGACCTCTCATGCCTTAAAAC
1 GAGAGAAAATGGTAATATCCAATTATTTTC-AATCAAGAATAAATGACCTCTCATGCATTAAAAC
*
1499314 ATTCATTTATTACTCCAATTGAAATG
65 AGTCATTTATTACTCCAATTGAAATG
* * * **
1499340 GAGAGAAAATGGTAATATCTAATTATTTTCAATCGAGAATAAATGACCTCTCATTCATTAAAGTA
1 GAGAGAAAATGGTAATATCCAATTATTTTCAATCAAGAATAAATGACCTCTCATGCATTAAAACA
1499405 GTCATTTATTACT
66 GTCATTTATTACT
1499418 TCAACCGAAA
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
90 66 0.94
91 4 0.06
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (90 bp):
GAGAGAAAATGGTAATATCCAATTATTTTCAATCAAGAATAAATGACCTCTCATGCATTAAAACA
GTCATTTATTACTCCAATTGAAATG
Found at i:1501971 original size:87 final size:87
Alignment explanation
Indices: 1501869--1502028 Score: 239
Period size: 87 Copynumber: 1.8 Consensus size: 87
1501859 GCTTCTTTAG
* * * *
1501869 GGAAAATAAAATCTGGAGACATTAATTCAGTCCACTGTTCTTCAGGGAAGATTGAATCAAGGCAG
1 GGAAAATAAAATCTGGAGACATTAATTAAGTCCACTGTTATTCAGGGAAAATTGAATCAAGGAAG
1501934 ACTTGTTCTGCTACTTCTCCAA
66 ACTTGTTCTGCTACTTCTCCAA
* * * * *
1501956 GGAAAATCAGATCTGGATACATTAATTAATTCCACTGTTATTCAGGGAAAATTGAATCGAGGAAG
1 GGAAAATAAAATCTGGAGACATTAATTAAGTCCACTGTTATTCAGGGAAAATTGAATCAAGGAAG
1502021 ACTTGTTC
66 ACTTGTTC
1502029 CACTGATACT
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
87 64 1.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (87 bp):
GGAAAATAAAATCTGGAGACATTAATTAAGTCCACTGTTATTCAGGGAAAATTGAATCAAGGAAG
ACTTGTTCTGCTACTTCTCCAA
Found at i:1503408 original size:7 final size:7
Alignment explanation
Indices: 1503396--1503422 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
1503386 GAACACCCTT
1503396 TTATTTA
1 TTATTTA
1503403 TTATTTA
1 TTATTTA
1503410 TTATTTA
1 TTATTTA
1503417 TTATTT
1 TTATTT
1503423 TTTTCTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (7 bp):
TTATTTA
Found at i:1503431 original size:7 final size:7
Alignment explanation
Indices: 1503421--1503513 Score: 87
Period size: 7 Copynumber: 12.4 Consensus size: 7
1503411 TATTTATTAT
1503421 TTTTTTC
1 TTTTTTC
1503428 TTTTTTC
1 TTTTTTC
1503435 TTTTTTC
1 TTTTTTC
*
1503442 TTTTTTA
1 TTTTTTC
1503449 TTTTTTC
1 TTTTTTC
*
1503456 TTTTCTC
1 TTTTTTC
1503463 TTTTTTC
1 TTTTTTC
1503470 ATTTTTTTC
1 --TTTTTTC
*
1503479 ATTTTTATT
1 -TTTTT-TC
*
1503488 TTATTTTA
1 TT-TTTTC
1503496 TTTCTTTC
1 TTT-TTTC
*
1503504 ATTTTTC
1 TTTTTTC
1503511 TTT
1 TTT
1503514 CTTCAGGCGA
Statistics
Matches: 71, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
7 45 0.63
8 15 0.21
9 11 0.15
ACGTcount: A:0.08, C:0.12, G:0.00, T:0.81
Consensus pattern (7 bp):
TTTTTTC
Found at i:1503447 original size:21 final size:21
Alignment explanation
Indices: 1503421--1503513 Score: 96
Period size: 21 Copynumber: 4.1 Consensus size: 21
1503411 TATTTATTAT
*
1503421 TTTTTTCTTTTTTCTTTTTTC
1 TTTTTTATTTTTTCTTTTTTC
*
1503442 TTTTTTATTTTTTCTTTTCTC
1 TTTTTTATTTTTTCTTTTTTC
*
1503463 TTTTTTCATTTTTTTCATTTTTATT
1 TTTTTT-A-TTTTTTC-TTTTT-TC
*
1503488 TTATTTTATTTCTTTCATTTTTC
1 TT-TTTTATTT-TTTCTTTTTTC
1503511 TTT
1 TTT
1503514 CTTCAGGCGA
Statistics
Matches: 60, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
21 25 0.42
22 2 0.03
23 10 0.17
24 11 0.18
25 8 0.13
26 4 0.07
ACGTcount: A:0.08, C:0.12, G:0.00, T:0.81
Consensus pattern (21 bp):
TTTTTTATTTTTTCTTTTTTC
Done.