Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008737.1 Hibiscus syriacus cultivar Beakdansim tig00111812_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2791265
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 14
Found at i:18119 original size:2 final size:2
Alignment explanation
Indices: 18112--18147 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
18102 TCGTTTTCTT
18112 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
18148 AGTTTAACTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:18311 original size:21 final size:19
Alignment explanation
Indices: 18274--18316 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
18264 AAAATACCTA
18274 ATTAAATAAAAAAATATAT
1 ATTAAATAAAAAAATATAT
**
18293 ATTAAATATTAAAATATAT
1 ATTAAATAAAAAAATATAT
18312 ATTAA
1 ATTAA
18317 CCCTTTGTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (19 bp):
ATTAAATAAAAAAATATAT
Found at i:18569 original size:2 final size:2
Alignment explanation
Indices: 18562--18616 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
18552 AAGATGAAAT
18562 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
18604 TA TA TA TA TA TA T
1 TA TA TA TA TA TA T
18617 TCCAACTCAT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:18793 original size:18 final size:18
Alignment explanation
Indices: 18772--18830 Score: 68
Period size: 18 Copynumber: 3.3 Consensus size: 18
18762 TAAGTTTTCT
18772 ATTTGTAGTTCAATTTTG
1 ATTTGTAGTTCAATTTTG
* *
18790 ATTTG-A-TTTAAGTTTTCT
1 ATTTGTAGTTCAA-TTTT-G
18808 ATTTGTAGTTCAATTTTG
1 ATTTGTAGTTCAATTTTG
18826 ATTTG
1 ATTTG
18831 ATTTAGATAT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
16 4 0.12
17 5 0.15
18 15 0.45
19 5 0.15
20 4 0.12
ACGTcount: A:0.22, C:0.05, G:0.15, T:0.58
Consensus pattern (18 bp):
ATTTGTAGTTCAATTTTG
Found at i:18801 original size:36 final size:36
Alignment explanation
Indices: 18754--18835 Score: 164
Period size: 36 Copynumber: 2.3 Consensus size: 36
18744 ATTCAGTTTC
18754 ATTTGATTTAAGTTTTCTATTTGTAGTTCAATTTTG
1 ATTTGATTTAAGTTTTCTATTTGTAGTTCAATTTTG
18790 ATTTGATTTAAGTTTTCTATTTGTAGTTCAATTTTG
1 ATTTGATTTAAGTTTTCTATTTGTAGTTCAATTTTG
18826 ATTTGATTTA
1 ATTTGATTTA
18836 GATATATAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 46 1.00
ACGTcount: A:0.23, C:0.05, G:0.13, T:0.59
Consensus pattern (36 bp):
ATTTGATTTAAGTTTTCTATTTGTAGTTCAATTTTG
Found at i:28871 original size:40 final size:41
Alignment explanation
Indices: 28763--28898 Score: 100
Period size: 40 Copynumber: 3.4 Consensus size: 41
28753 CATTTGTTCA
* * *
28763 AAAAATGTCACTAAAGTATAATATTTAGCGGCGTTTATATC
1 AAAAATGACACTAAAGTACAATATTTAGAGGCGTTTATATC
* * * * * *
28804 AAAACA--CCACTAAAATACGAGTCTTTAGAGGTGTTTGTA-C
1 AAAA-ATGACACTAAAGTAC-AATATTTAGAGGCGTTTATATC
***
28844 AAAAATGACACTAAAGTACAATATTTAGTTACGTTTATAT-
1 AAAAATGACACTAAAGTACAATATTTAGAGGCGTTTATATC
* *
28884 AAAAACGCCACTAAA
1 AAAAATGACACTAAA
28899 ATACGAGTAT
Statistics
Matches: 71, Mismatches: 19, Indels: 11
0.70 0.19 0.11
Matches are distributed among these distances:
39 1 0.01
40 40 0.56
41 29 0.41
42 1 0.01
ACGTcount: A:0.43, C:0.15, G:0.13, T:0.29
Consensus pattern (41 bp):
AAAAATGACACTAAAGTACAATATTTAGAGGCGTTTATATC
Found at i:28922 original size:81 final size:81
Alignment explanation
Indices: 28718--28929 Score: 255
Period size: 81 Copynumber: 2.6 Consensus size: 81
28708 ATTTAGCGTT
* * * * * * *
28718 TATAAAAACGCCACTAAAGTATGAGTATTTTCCGACATTTGTTCAAAAAATGTCACTAAAGTATA
1 TATAAAAACGCCACTAAAATACGAGTATTTACCGGCTTTTGTTC-AAAAATGACACTAAAGTACA
*
28783 ATATTTAGCGGCGTTTA
65 ATATTTAGCGACGTTTA
* * * ** *
28800 TATCAAAACACCACTAAAATACGAGTCTTTAGAGG-TGTTTGTACAAAAATGACACTAAAGTACA
1 TATAAAAACGCCACTAAAATACGAGTATTTACCGGCT-TTTGTTCAAAAATGACACTAAAGTACA
**
28864 ATATTTAGTTACGTTTA
65 ATATTTAGCGACGTTTA
28881 TATAAAAACGCCACTAAAATACGAGTATTTACCGGCTTTTGTTCAAAAA
1 TATAAAAACGCCACTAAAATACGAGTATTTACCGGCTTTTGTTCAAAAA
28930 ACGCCGCTAA
Statistics
Matches: 106, Mismatches: 22, Indels: 5
0.80 0.17 0.04
Matches are distributed among these distances:
81 73 0.69
82 33 0.31
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.31
Consensus pattern (81 bp):
TATAAAAACGCCACTAAAATACGAGTATTTACCGGCTTTTGTTCAAAAATGACACTAAAGTACAA
TATTTAGCGACGTTTA
Found at i:28929 original size:41 final size:41
Alignment explanation
Indices: 28721--28941 Score: 126
Period size: 41 Copynumber: 5.4 Consensus size: 41
28711 TAGCGTTTAT
* * ** * *
28721 AAAAACGCCACTAAAGTATGAGTATTTTCCGACATTTGTTC
1 AAAAACGCCACTAAAATACGAGTATTTAGCGGCGTTTGTTC
* * * * * *
28762 AAAAAATGTCACTAAAGTA-TAATATTTAGCGGCGTTTATATC
1 -AAAAACGCCACTAAAATACGAGTATTTAGCGGCGTTTGT-TC
* * * * *
28804 -AAAACACCACTAAAATACGAGTCTTTAGAGGTGTTTGTAC
1 AAAAACGCCACTAAAATACGAGTATTTAGCGGCGTTTGTTC
* * * * *** *
28844 AAAAATGACACTAAAGTAC-AATATTTAGTTACGTTTATAT-
1 AAAAACGCCACTAAAATACGAGTATTTAGCGGCGTTTGT-TC
* *
28884 AAAAACGCCACTAAAATACGAGTATTTACCGGCTTTTGTTC
1 AAAAACGCCACTAAAATACGAGTATTTAGCGGCGTTTGTTC
*
28925 AAAAAACGCCGCTAAAA
1 -AAAAACGCCACTAAAA
28942 ACCCATTTTG
Statistics
Matches: 129, Mismatches: 43, Indels: 14
0.69 0.23 0.08
Matches are distributed among these distances:
40 43 0.33
41 53 0.41
42 33 0.26
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.29
Consensus pattern (41 bp):
AAAAACGCCACTAAAATACGAGTATTTAGCGGCGTTTGTTC
Found at i:29417 original size:3 final size:3
Alignment explanation
Indices: 29404--29451 Score: 62
Period size: 3 Copynumber: 15.7 Consensus size: 3
29394 GAGACCTGTT
*
29404 TTA TT- TTA TTA TTA TTA TCA TTA TTA TTTA TTA TTTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA -TTA TTA TTA TTA
29450 TT
1 TT
29452 TTCATTTGCA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
2 2 0.05
3 32 0.80
4 6 0.15
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:29430 original size:23 final size:23
Alignment explanation
Indices: 29408--29451 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
29398 CCTGTTTTAT
29408 TTTATTA-TTATTATCATTATTA
1 TTTATTATTTATTATCATTATTA
*
29430 TTTATTATTTATTATTATTATT
1 TTTATTATTTATTATCATTATT
29452 TTCATTTGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (23 bp):
TTTATTATTTATTATCATTATTA
Found at i:32190 original size:60 final size:60
Alignment explanation
Indices: 32126--32241 Score: 164
Period size: 60 Copynumber: 1.9 Consensus size: 60
32116 AACATAATGG
*
32126 ATAGTGAG-GTGACCATTATGTAACTTTTAATAGTCGA-GGGACTCAACAAAGTAACATTCT
1 ATAGTGAGAG-GACCATTATGTAACTTTTAATAGTC-ATGGGACTCAACAAAGCAACATTCT
* * *
32186 ATAGTTAGAGGACCATTTTGTAACTTTTGATAGTCATGGGACTCAACAAAGCAACA
1 ATAGTGAGAGGACCATTATGTAACTTTTAATAGTCATGGGACTCAACAAAGCAACA
32242 CCAAGTCGAA
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
59 1 0.02
60 48 0.96
61 1 0.02
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (60 bp):
ATAGTGAGAGGACCATTATGTAACTTTTAATAGTCATGGGACTCAACAAAGCAACATTCT
Found at i:41850 original size:29 final size:30
Alignment explanation
Indices: 41818--41881 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 30
41808 CTCTTTAAAA
* *
41818 AAATTCAAGGACTAAA-TTAAATTTTAATT
1 AAATTCAAGGACCAAAGTGAAATTTTAATT
* *
41847 AAATTTAGGGACCAAAGTGAAATTTTAATT
1 AAATTCAAGGACCAAAGTGAAATTTTAATT
41877 AAATT
1 AAATT
41882 TGAATCCAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 13 0.43
30 17 0.57
ACGTcount: A:0.47, C:0.06, G:0.11, T:0.36
Consensus pattern (30 bp):
AAATTCAAGGACCAAAGTGAAATTTTAATT
Found at i:45069 original size:10 final size:10
Alignment explanation
Indices: 45054--45083 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
45044 CTTGATTCTA
45054 GTTTCTTGTT
1 GTTTCTTGTT
45064 GTTTCTTGTT
1 GTTTCTTGTT
45074 GTTTCTTGTT
1 GTTTCTTGTT
45084 TTTGATCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.00, C:0.10, G:0.20, T:0.70
Consensus pattern (10 bp):
GTTTCTTGTT
Found at i:45438 original size:65 final size:64
Alignment explanation
Indices: 45304--45464 Score: 193
Period size: 65 Copynumber: 2.5 Consensus size: 64
45294 GTGCACTAAG
* * * *
45304 TGTGCATTGATGCATAGAATGCATTCGATG-TTTCAAAATAGCCTGAGCACATCGATGTATGTCT
1 TGTGCATCGATGCATA-AATGCATTCGATGTTTTCAAAATACCCTGAGCACATCGATGCATGTCA
**
45368 TGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAA-ACCCTGAGTGCATCGATGCATGGT
1 TGTGCATCGATGCAT-AAATGCATTCGATGTTTTCA-AAATACCCTGAGCACATCGATGCAT-GT
45432 -A
63 CA
*
45433 TGTGCATCGATGCATAAAATGCACTCGATGTT
1 TGTGCATCGATGCAT-AAATGCATTCGATGTT
45465 CAATTTATTC
Statistics
Matches: 85, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
64 27 0.32
65 53 0.62
66 5 0.06
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.32
Consensus pattern (64 bp):
TGTGCATCGATGCATAAATGCATTCGATGTTTTCAAAATACCCTGAGCACATCGATGCATGTCA
Found at i:54534 original size:60 final size:60
Alignment explanation
Indices: 54412--54547 Score: 150
Period size: 60 Copynumber: 2.3 Consensus size: 60
54402 AAATGAACAC
* * * * * *
54412 TTTATAACTTTTAATAGTTGAGAGACTCAATAAAGTAACGTTCTATAGTCAGAAGATTAT
1 TTTATAACTTTTAATAATTGAGAGACTCAACAAAATAACGTACTATAATCAGAAGATCAT
* * *
54472 TTTATAACTTTTAATAATTGAGATATTCAACAAAATAATG-ACATATAATCA-AGAGATCAT
1 TTTATAACTTTTAATAATTGAGAGACTCAACAAAATAACGTAC-TATAATCAGA-AGATCAT
*
54532 TTTATAACTTCTAATA
1 TTTATAACTTTTAATA
54548 GTGCGTGAAC
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
59 2 0.03
60 62 0.97
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.38
Consensus pattern (60 bp):
TTTATAACTTTTAATAATTGAGAGACTCAACAAAATAACGTACTATAATCAGAAGATCAT
Found at i:58904 original size:2 final size:2
Alignment explanation
Indices: 58897--58930 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
58887 TTATTATTAT
58897 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
58931 ATTTGTGAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:59081 original size:35 final size:36
Alignment explanation
Indices: 59028--59130 Score: 117
Period size: 35 Copynumber: 3.0 Consensus size: 36
59018 AAATATAATG
* *
59028 TATAATTTTGAAAA-ATTTTGAAAACATTATATAT-
1 TATAGTTTTTAAAACATTTTGAAAACATTATATATA
*
59062 TGTAGTTTTTAAAACATTTTGAAAAC-TTAT-TAATA
1 TATAGTTTTTAAAACATTTTGAAAACATTATAT-ATA
* *
59097 TATAGTTTTTAAAACATTTTTAAAA-ATAATATAT
1 TATAGTTTTTAAAACATTTTGAAAACATTATATAT
59131 GATTTTAAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
33 1 0.02
34 17 0.29
35 39 0.67
36 1 0.02
ACGTcount: A:0.45, C:0.04, G:0.06, T:0.46
Consensus pattern (36 bp):
TATAGTTTTTAAAACATTTTGAAAACATTATATATA
Found at i:59176 original size:33 final size:30
Alignment explanation
Indices: 59104--59180 Score: 93
Period size: 33 Copynumber: 2.5 Consensus size: 30
59094 ATATATAGTT
* *
59104 TTTAAAACATTTTTAAAAATAATATATGAT
1 TTTAAAATATTTTTAAAAATAATATATGAA
59134 TTTAAAATATTTTTGAAAAATATATAATAAT-AA
1 TTTAAAATATTTTT-AAAAATA-AT-AT-ATGAA
59167 TTTAAAATATTTTT
1 TTTAAAATATTTTT
59181 TTTGAAAATT
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
30 13 0.32
31 7 0.17
32 2 0.05
33 17 0.41
34 2 0.05
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (30 bp):
TTTAAAATATTTTTAAAAATAATATATGAA
Found at i:60813 original size:2 final size:2
Alignment explanation
Indices: 60806--60850 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
60796 TTTTTAATTC
60806 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
60848 TA T
1 TA T
60851 TTTTGTTTTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:60901 original size:23 final size:21
Alignment explanation
Indices: 60871--60947 Score: 72
Period size: 23 Copynumber: 3.7 Consensus size: 21
60861 TCTTTTTTTA
60871 TTTCCTTTTTATTTATTCATTT
1 TTTCCTTTTTATTTATTC-TTT
*
60893 GTTTCCTTTTGATTTA-TCTTT
1 -TTTCCTTTTTATTTATTCTTT
*
60914 CATTTCCTTTTT-TTT-TTC-CT
1 --TTTCCTTTTTATTTATTCTTT
60934 TTTCCTTTTTATTT
1 TTTCCTTTTTATTT
60948 TATTTTTACT
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
18 10 0.21
19 3 0.06
20 1 0.02
21 8 0.17
22 11 0.23
23 14 0.30
ACGTcount: A:0.09, C:0.17, G:0.03, T:0.71
Consensus pattern (21 bp):
TTTCCTTTTTATTTATTCTTT
Found at i:60919 original size:22 final size:23
Alignment explanation
Indices: 60867--60924 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 23
60857 TTTATCTTTT
*
60867 TTTATTTCCTTTTTATTTATTCA
1 TTTATTTCCTTTTGATTTATTCA
*
60890 TTTGTTTCCTTTTGATTTA-TC-
1 TTTATTTCCTTTTGATTTATTCA
60911 TTTCATTTCCTTTT
1 TTT-ATTTCCTTTT
60925 TTTTTTCCTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.10
22 11 0.35
23 17 0.55
ACGTcount: A:0.12, C:0.16, G:0.03, T:0.69
Consensus pattern (23 bp):
TTTATTTCCTTTTGATTTATTCA
Found at i:60954 original size:18 final size:18
Alignment explanation
Indices: 60916--60960 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
60906 TTATCTTTCA
* *
60916 TTTCCTTTTTTTTTTCCT
1 TTTCCTTTTTATTTTACT
*
60934 TTTCCTTTTTATTTTATT
1 TTTCCTTTTTATTTTACT
*
60952 TTTACTTTT
1 TTTCCTTTT
60961 ACATTTCTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.07, C:0.16, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTCCTTTTTATTTTACT
Found at i:66345 original size:84 final size:83
Alignment explanation
Indices: 66257--67110 Score: 803
Period size: 84 Copynumber: 10.3 Consensus size: 83
66247 TCATTTTTCA
* *
66257 AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGTACATCATTTGCAGCATAACTTAAGTCGA
1 AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCTA
66322 GAAGGGTTATCTGCCAAC
66 GAAGGGTTATCTGCCAAC
* * * *
66340 TAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGTATAGCTTAAGTCG
1 -AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCT
*
66405 AGAAGGGCTATCTG-C--C
65 AGAAGGGTTATCTGCCAAC
* * * * * * * * * *
66421 AAAGTCCCTCGAGTTCAATTACAG-TTAGCATCGAGGGCACATCATTTACAGCATAACTCAAGGC
1 AAAGACCTTCGAGTTCGACTAC-GCTCAGC-TCCAAGGCACATCATTTGCAGCATAACTTAAGTC
* * ** *
66485 TCGAAGTGTTATCTGTGACC
64 TAGAAGGGTTATCTGCCAAC
* * * * *
66505 AAAAGACCTTCGAGTTTGACTTCGCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAGTAT
1 -AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCT
* *
66570 AGAAGGGTTGTATGCCAAC
65 AGAAGGGTTATCTGCCAAC
* * * * **
66589 ACAAGACCTTTGAGTTCGACTACACTCAGCT-CAACGGCACGTCATTTGCAACATAGTTTAAGTC
1 A-AAGACCTTCGAGTTCGACTACGCTCAGCTCCAA-GGCACATCATTTGCAGCATAACTTAAGTC
* *
66653 GAGAAGGGCTATCTG-C--C
64 TAGAAGGGTTATCTGCCAAC
** * ** * * * * * *
66670 AAAGACCCCCGAGTTCGATTATACTCAGCTTCGAGGGCATATCATTTACAGCATAACTCAAGGCT
1 AAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTGCAGCATAACTTAAGTCT
* *
66735 AGAAGGGTTATCTGTCACC
65 AGAAGGGTTATCTGCCAAC
* * *
66754 AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGTAGCACAACTTAAGTCTA
1 AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCTA
*
66819 GAAGGGTTGTCTGCCAAAC
66 GAAGGGTTATCTGCC-AAC
* * * *
66838 AAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGTATAGCTTAAGTCGA
1 AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCTA
**
66903 GAAGGACTATCTG-C--C
66 GAAGGGTTATCTGCCAAC
* * * * * * * ** * *
66918 AAAGACCCTCGAGTTCGATTACACTTAGCATCGAGGGCACATAATTTATAGCATAACTCAAGGCT
1 AAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTGCAGCATAACTTAAGTCT
* ** *
66983 CGAAGGGTTATCTGTGACC
65 AGAAGGGTTATCTGCCAAC
* * * *
67002 AAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAAGCATATCATTTGTAGCACAACTTAAGTCT
1 -AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCT
*
67067 AGAAGGGTTGTCTGCCAAC
65 AGAAGGGTTATCTGCCAAC
*
67086 ATAAGACCTTTGAGTTCGACTACGC
1 A-AAGACCTTCGAGTTCGACTACGC
67111 ACATCATTTG
Statistics
Matches: 609, Mismatches: 140, Indels: 42
0.77 0.18 0.05
Matches are distributed among these distances:
80 69 0.11
81 113 0.19
82 2 0.00
83 50 0.08
84 330 0.54
85 45 0.07
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.25
Consensus pattern (83 bp):
AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCTA
GAAGGGTTATCTGCCAAC
Found at i:66706 original size:249 final size:249
Alignment explanation
Indices: 66255--67647 Score: 2025
Period size: 248 Copynumber: 5.7 Consensus size: 249
66245 AGTCATTTTT
* * *
66255 CAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGTACATCATTTGCAGCATAACTTAAGTC
1 CAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAGTC
* *
66320 GAGAAGGGTTATCTGCCAACTA-AAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCA
66 TAGAAGGGTTGTCTGCCAAC-ACAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCA
* * * *
66384 TTTGCAGTATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGTCCCTCGAGTTCAATTACAGTTAG
130 TTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTACACTTAG
* * * *
66449 CATCGAGGGCACATCATTTACAGCATAACTCAAGGCTCGAAGTGTTATCTGTGAC
195 CATCGAGGGCATATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAC
* * *
66504 CAAAAGACCTTCGAGTTTGACTTCGCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAGTA
1 CAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAGTC
* * *
66569 TAGAAGGGTTGTATGCCAACACAAGACCTTTGAGTTCGACTACACTCAGCT-CAACGGCACGTCA
66 TAGAAGGGTTGTCTGCCAACACAAGACCTTTGAGTTCGACTACGCTCAGCTCCAA-GGCACATCA
* * * * *
66633 TTTGCAACATAGTTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTATACTCAG
130 TTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTACACTTAG
*
66698 CTTCGAGGGCATATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAC
195 CATCGAGGGCATATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAC
*
66753 C-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGTAGCACAACTTAAGTC
1 CAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAGTC
66817 TAGAAGGGTTGTCTGCCAA-ACAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCA
66 TAGAAGGGTTGTCTGCCAACAC-AAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCA
* *
66881 TTTGCAGTATAGCTTAAGTCGAGAAGGACTATCTGCCAAAGACCCTCGAGTTCGATTACACTTAG
130 TTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTACACTTAG
* * * * *
66946 CATCGAGGGCACATAATTTATAGCATAACTCAAGGCTCGAAGGGTTATCTGTGAC
195 CATCGAGGGCATATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAC
* *
67001 CAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAAGCATATCATTTGTAGCACAACTTAAGTC
1 CAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAGTC
*
67066 TAGAAGGGTTGTCTGCCAACATAAGACCTTTGAGTTCG---A--CT-A----C---GCACATCAT
66 TAGAAGGGTTGTCTGCCAACACAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCAT
* * * * *
67118 TTGCAGCATAGTTTAAGTCGAGAAGGGCTATTTGCCAAATACCCCCGAGTTCGATTACACTCAGC
131 TTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTACACTTAGC
* * *
67183 TTCGAGGGCATATCATTTACAGCATAACTCAAGGTTATAAGGGTTATCTGTCAC
196 ATCGAGGGCATATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAC
67237 C-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAGTC
1 CAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAGTC
* *
67301 TAGAAGGGTTGTCTGCCAAC-CAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACGTCA
66 TAGAAGGGTTGTCTGCCAACAC-AAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCA
* * *
67365 TTTGCATCATAGCTTAAGTCGAGAAGGGATATCTGCCAAAGACCCTCGAGTTCGATTACACTTAA
130 TTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTACACTTAG
67430 CATCGAGGGCATATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAC
195 CATCGAGGGCATATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAC
* * *
67485 CAAAAGACCTTCGAGTTCGAGTACGCTCAGCTCCCAGGCATATCATTTGCAGCATAACTTAAGTC
1 CAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAGTC
* * * * * * *
67550 AAGAAGAGTTATCTTCCAACA-AAGACCTTTGAGTTCGATTACGCTCAACTCCAAGGCATATCAT
66 TAGAAGGGTTGTCTGCCAACACAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCAT
* * * * * *
67614 TTACATCATAGCTCAAGGCAAAAAGGGCTATCTG
131 TTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTG
67648 TCAATAAAAT
Statistics
Matches: 1026, Mismatches: 96, Indels: 45
0.88 0.08 0.04
Matches are distributed among these distances:
235 96 0.09
236 114 0.11
238 1 0.00
239 1 0.00
240 2 0.00
241 1 0.00
243 1 0.00
244 2 0.00
245 1 0.00
246 1 0.00
247 2 0.00
248 408 0.40
249 395 0.38
250 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (249 bp):
CAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAGTC
TAGAAGGGTTGTCTGCCAACACAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCAT
TTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTACACTTAGC
ATCGAGGGCATATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAC
Found at i:67323 original size:84 final size:83
Alignment explanation
Indices: 67113--67615 Score: 525
Period size: 84 Copynumber: 6.1 Consensus size: 83
67103 GACTACGCAC
** * * * * **
67113 ATCATTTGCAGCATAGTTTAAGTCGAGAAGGGCTATTTG---CCAAATACCCCCGAGTTCGATTA
1 ATCATTTGCAGCATAACTTAAGTCTAGAAGGGTTATCTGCCACCAAAGACCTTCGAGTTCGATTA
* * *
67175 CACTCAGCTTCGAGGGCAT
66 CGCTCAGC-TCCAAGGCAT
* * * * *
67194 ATCATTTACAGCATAACTCAAGGT-TATAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACT
1 ATCATTTGCAGCATAACTTAA-GTCTAGAAGGGTTATCTGCCACCAAAGACCTTCGAGTTCGATT
67258 ACGCTCAGCTCCAAGGCAT
65 ACGCTCAGCTCCAAGGCAT
* * *
67277 ATCATTTGCAGCACAACTTAAGTCTAGAAGGGTTGTCTGCCAACCAAAGACCTTCGAGTTCGACT
1 ATCATTTGCAGCATAACTTAAGTCTAGAAGGGTTATCTGCC-ACCAAAGACCTTCGAGTTCGATT
*
67342 ACGCTCAGCTCCAAGGCAC
65 ACGCTCAGCTCCAAGGCAT
* * * * * *
67361 GTCATTTGCATCATAGCTTAAGTCGAGAAGGGATATCTG---CCAAAGACCCTCGAGTTCGATTA
1 ATCATTTGCAGCATAACTTAAGTCTAGAAGGGTTATCTGCCACCAAAGACCTTCGAGTTCGATTA
* * * * *
67423 CACTTAACATCGAGGGCAT
66 CGCTCAGC-TCCAAGGCAT
* * * * *
67442 ATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGAGT
1 ATCATTTGCAGCATAACTTAAGTCTAGAAGGGTTATCTGCCACC-AAAGACCTTCGAGTTCGATT
*
67507 ACGCTCAGCTCCCAGGCAT
65 ACGCTCAGCTCCAAGGCAT
* * * * *
67526 ATCATTTGCAGCATAACTTAAGTCAAGAAGAGTTATCTTCCAACAAAGACCTTTGAGTTCGATTA
1 ATCATTTGCAGCATAACTTAAGTCTAGAAGGGTTATCTGCCACCAAAGACCTTCGAGTTCGATTA
*
67591 CGCTCAACTCCAAGGCAT
66 CGCTCAGCTCCAAGGCAT
67609 ATCATTT
1 ATCATTT
67616 ACATCATAGC
Statistics
Matches: 346, Mismatches: 65, Indels: 20
0.80 0.15 0.05
Matches are distributed among these distances:
80 26 0.08
81 66 0.19
82 4 0.01
83 82 0.24
84 144 0.42
85 24 0.07
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (83 bp):
ATCATTTGCAGCATAACTTAAGTCTAGAAGGGTTATCTGCCACCAAAGACCTTCGAGTTCGATTA
CGCTCAGCTCCAAGGCAT
Found at i:67368 original size:484 final size:486
Alignment explanation
Indices: 66257--67593 Score: 2144
Period size: 484 Copynumber: 2.7 Consensus size: 486
66247 TCATTTTTCA
* * * *
66257 AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGTACATCATTTGCAGCATAACTTAAGTCGA
1 AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAGTCTA
* *
66322 GAAGGGTTATCTGCCAACTAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
66 GAAGGGTTGTCTGCCAACCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
* * * *
66387 GCAGTATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGTCCCTCGAGTTCAATTACAGTTAGCAT
131 GCAGTATAGCTTAAGTCGAGAAGGACTATCTGCCAAAGACCCTCGAGTTCGATTACACTTAGCAT
*
66452 CGAGGGCACATCATTTACAGCATAACTCAAGGCTCGAAGTGTTATCTGTGACCAAAAGACCTTCG
196 CGAGGGCACATCATTTACAGCATAACTCAAGGCTCGAAGGGTTATCTGTGACCAAAAGACCTTCG
* * * *
66517 AGTTTGACTTCGCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAGTATAGAAGGGTTGTA
261 AGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAGTCTAGAAGGGTTGTC
66582 TGCCAACACAAGACCTTTGAGTTCGACTACACTCAGCTCAACGGCACGTCATTTGCAACATAGTT
326 TGCCAACA-AAGACCTTTGAGTTCGACT--A--C-G--CAA--GCAC-TCATTTGCAACATAGTT
*
66647 TAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTATACTCAGCTTCGAGGGCATAT
380 TAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCATAT
66712 CATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACC
445 CATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACC
*
66754 AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGTAGCACAACTTAAGTCTA
1 AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAGTCTA
*
66819 GAAGGGTTGTCTGCCAAACAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
66 GAAGGGTTGTCTGCCAACCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
66884 GCAGTATAGCTTAAGTCGAGAAGGACTATCTGCCAAAGACCCTCGAGTTCGATTACACTTAGCAT
131 GCAGTATAGCTTAAGTCGAGAAGGACTATCTGCCAAAGACCCTCGAGTTCGATTACACTTAGCAT
* *
66949 CGAGGGCACATAATTTATAGCATAACTCAAGGCTCGAAGGGTTATCTGTGACCAAAAGACCTTCG
196 CGAGGGCACATCATTTACAGCATAACTCAAGGCTCGAAGGGTTATCTGTGACCAAAAGACCTTCG
* *
67014 AGTTCGACTACGCTCAGCTCCAAAGCATATCATTTGTAGCACAACTTAAGTCTAGAAGGGTTGTC
261 AGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAGTCTAGAAGGGTTGTC
*
67079 TGCCAACATAAGACCTTTGAGTTCGACTACGC-A-CA-TCATTTGCAGCATAGTTTAAGTCGAGA
326 TGCCAACA-AAGACCTTTGAGTTCGACTACGCAAGCACTCATTTGCAACATAGTTTAAGTCGAGA
* *
67141 AGGGCTATTTGCCAAATACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCATATCATTTACAGC
390 AGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCATATCATTTACAGC
* *
67206 ATAACTCAAGGTTATAAGGGTTATCTGTCACC
455 ATAACTCAAGGCTAGAAGGGTTATCTGTCACC
67238 AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAGTCTA
1 AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAGTCTA
* *
67303 GAAGGGTTGTCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACGTCATTT
66 GAAGGGTTGTCTGCCAACCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
*
67368 GCA-TCATAGCTTAAGTCGAGAAGGGA-TATCTGCCAAAGACCCTCGAGTTCGATTACACTTAAC
131 GCAGT-ATAGCTTAAGTCGAGAA-GGACTATCTGCCAAAGACCCTCGAGTTCGATTACACTTAGC
* * *
67431 ATCGAGGGCATATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTT
194 ATCGAGGGCACATCATTTACAGCATAACTCAAGGCTCGAAGGGTTATCTGTGACCAAAAGACCTT
* * * * * *
67496 CGAGTTCGAGTACGCTCAGCTCCCAGGCATATCATTTGCAGCATAACTTAAGTCAAGAAGAGTTA
259 CGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAGTCTAGAAGGGTTG
* *
67561 TCTTCCAACAAAGACCTTTGAGTTCGATTACGC
324 TCTGCCAACAAAGACCTTTGAGTTCGACTACGC
67594 TCAACTCCAA
Statistics
Matches: 790, Mismatches: 48, Indels: 18
0.92 0.06 0.02
Matches are distributed among these distances:
483 23 0.03
484 426 0.54
485 3 0.00
486 2 0.00
489 1 0.00
490 1 0.00
492 1 0.00
493 1 0.00
495 1 0.00
497 331 0.42
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (486 bp):
AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAGTCTA
GAAGGGTTGTCTGCCAACCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
GCAGTATAGCTTAAGTCGAGAAGGACTATCTGCCAAAGACCCTCGAGTTCGATTACACTTAGCAT
CGAGGGCACATCATTTACAGCATAACTCAAGGCTCGAAGGGTTATCTGTGACCAAAAGACCTTCG
AGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAGTCTAGAAGGGTTGTC
TGCCAACAAAGACCTTTGAGTTCGACTACGCAAGCACTCATTTGCAACATAGTTTAAGTCGAGAA
GGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCATATCATTTACAGCA
TAACTCAAGGCTAGAAGGGTTATCTGTCACC
Found at i:67669 original size:165 final size:163
Alignment explanation
Indices: 66253--67651 Score: 1030
Period size: 165 Copynumber: 8.5 Consensus size: 163
66243 GAAGTCATTT
* * * * * *
66253 TTCA-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGTACATCATTTGCAGCATAACTTAA
1 TTCACAAAGACCTTCGAGTTCGATTACGCTCAACTCCAAGGCATATCATTTACAGCATAACTCAA
* * * * *
66317 GTCGAGAAGGGTTATCTGCCAACTAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACAT
66 GGCTAGAAGGGTTATCTGTCAA--AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATAT
* * * *
66382 CATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATC
129 CATTTGCAGCATAACTTAAGTCAAGAAGGGTTATC
* * * * * * * * *
66417 TGC-CAAAGTCCCTCGAGTTCAATTACAG-TTAGCATCGAGGGCACATCATTTACAGCATAACTC
1 TTCACAAAGACCTTCGAGTTCGATTAC-GCTCAAC-TCCAAGGCATATCATTTACAGCATAACTC
* * * * *
66480 AAGGCTCGAAGTGTTATCTGTGACCAAAAGACCTTCGAGTTTGACTTCGCTCAGCTCCAAGGCAT
64 AAGGCTAGAAGGGTTATCTGT--CAAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCAT
* * *
66545 ATCATTTGCAGCACAACTTAAGT-ATAGAAGGGTTGTA
127 ATCATTTGCAGCATAACTTAAGTCA-AGAAGGGTTATC
* * * * * ** * * **
66582 TGCCAACACAAGACCTTTGAGTTCGACTACACTCAGCT-CAACGGCACGTCATTTGCAACATAGT
1 T-TC-ACA-AAGACCTTCGAGTTCGATTACGCTCAACTCCAA-GGCATATCATTTACAGCATAAC
* * * * * ** * ** * *
66646 TTAAGTCGAGAAGGGCTATCTG-C-CAAAGACCCCCGAGTTCGATTATACTCAGCTTCGAGGGCA
62 TCAAGGCTAGAAGGGTTATCTGTCAAAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCA
* * * *
66709 TATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATC
126 TATCATTTGCAGCATAACTTAAGTCAAGAAGGGTTATC
* * ** * *
66747 TGTCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGTAGCACAACTT
1 T-TCA-CAAAGACCTTCGAGTTCGATTACGCTCAACTCCAAGGCATATCATTTACAGCATAACTC
* * * * *
66812 AAGTCTAGAAGGGTTGTCTGCCAAACAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCAC
64 AAGGCTAGAAGGGTTATCTGTC-AA-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCAT
* * * **
66877 ATCATTTGCAGTATAGCTTAAGTCGAGAAGGACTATC
127 ATCATTTGCAGCATAACTTAAGTCAAGAAGGGTTATC
* * * * * * * * * *
66914 TGC-CAAAGACCCTCGAGTTCGATTACACTTAGCATCGAGGGCACATAATTTATAGCATAACTCA
1 TTCACAAAGACCTTCGAGTTCGATTACGCTCAAC-TCCAAGGCATATCATTTACAGCATAACTCA
* * *
66978 AGGCTCGAAGGGTTATCTGTGACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAAGCATA
65 AGGCTAGAAGGGTTATCTGT--CAAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATA
* * * *
67043 TCATTTGTAGCACAACTTAAGTCTAGAAGGGTTGTC
128 TCATTTGCAGCATAACTTAAGTCAAGAAGGGTTATC
* * * * **
67079 TGCCAACATAAGACCTTTGAGTTCG---A--CT--A---C---GCACATCATTTGCAGCATAGTT
1 T-TC-ACA-AAGACCTTCGAGTTCGATTACGCTCAACTCCAAGGCATATCATTTACAGCATAACT
* * * * * * * ** * * * *
67131 TAAGTCGAGAAGGGCTATTTG-C-CAAATACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCAT
63 CAAGGCTAGAAGGGTTATCTGTCAAAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCAT
* * * *
67194 ATCATTTACAGCATAACTCAAGGT-TATAAGGGTTATC
127 ATCATTTGCAGCATAACTTAA-GTCAAGAAGGGTTATC
* * * * *
67231 TGTCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCACAACTT
1 T-TCA-CAAAGACCTTCGAGTTCGATTACGCTCAACTCCAAGGCATATCATTTACAGCATAACTC
* * * *
67296 AAGTCTAGAAGGGTTGTCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCAC
64 AAGGCTAGAAGGGTTATCTGTCAA--AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCAT
* * * * *
67361 GTCATTTGCATCATAGCTTAAGTCGAGAAGGGATATC
127 ATCATTTGCAGCATAACTTAAGTCAAGAAGGGTTATC
* * * * * *
67398 TGC-CAAAGACCCTCGAGTTCGATTACACTTAACATCGAGGGCATATCATTTACAGCATAACTCA
1 TTCACAAAGACCTTCGAGTTCGATTACGCTCAAC-TCCAAGGCATATCATTTACAGCATAACTCA
* *
67462 AGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGAGTACGCTCAGCTCCCAGGCATA
65 AGGCTAGAAGGGTTATCTGTCA--AAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATA
*
67527 TCATTTGCAGCATAACTTAAGTCAAGAAGAGTTATC
128 TCATTTGCAGCATAACTTAAGTCAAGAAGGGTTATC
* * *
67563 TTCCAACAAAGACCTTTGAGTTCGATTACGCTCAACTCCAAGGCATATCATTTACATCATAGCTC
1 TT-C-ACAAAGACCTTCGAGTTCGATTACGCTCAACTCCAAGGCATATCATTTACAGCATAACTC
* * *
67628 AAGGCAAAAAGGGCTATCTGTCAA
64 AAGGCTAGAAGGGTTATCTGTCAA
67652 TAAAATTATC
Statistics
Matches: 962, Mismatches: 219, Indels: 107
0.75 0.17 0.08
Matches are distributed among these distances:
151 40 0.04
152 41 0.04
153 2 0.00
154 1 0.00
155 32 0.03
156 2 0.00
161 1 0.00
164 196 0.20
165 372 0.39
166 9 0.01
167 121 0.13
168 111 0.12
169 34 0.04
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (163 bp):
TTCACAAAGACCTTCGAGTTCGATTACGCTCAACTCCAAGGCATATCATTTACAGCATAACTCAA
GGCTAGAAGGGTTATCTGTCAAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCA
TTTGCAGCATAACTTAAGTCAAGAAGGGTTATC
Found at i:68216 original size:19 final size:19
Alignment explanation
Indices: 68192--68228 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
68182 ACCTGGAGTT
68192 ATTTTATTATATATATATC
1 ATTTTATTATATATATATC
68211 ATTTTATTATATATATAT
1 ATTTTATTATATATATAT
68229 GTGTGTGTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (19 bp):
ATTTTATTATATATATATC
Found at i:68345 original size:32 final size:32
Alignment explanation
Indices: 68249--68491 Score: 147
Period size: 32 Copynumber: 7.2 Consensus size: 32
68239 ATGTATAGTA
* *
68249 ATATAGTTTGTGAAAATGTTTTTGACAAAATATAT
1 ATATAGTTTTTGAAAATATTTTT---AAAATATAT
* * * *
68284 ATATAATTTTTAGAAAACGACTTTCAAAATATAT
1 ATATAGTTTTT-GAAAA-TATTTTTAAAATATAT
68318 ATATAGTTTTTGAAAATATTTTTAAAATATAAT
1 ATATAGTTTTTGAAAATATTTTTAAAATAT-AT
* * * *
68351 GTATA-ATTTTGAAAACATTTTGAAAACATTTATAT
1 ATATAGTTTTTGAAAATATTTT-TAAA-A--TATAT
*
68386 ATTGTATAGTTTTT-AAAATATTTTGAAAACTTATATAAT
1 A---TATAGTTTTTGAAAATATTTT-TAAA---ATAT-AT
68425 ATATAGTTTTT-AAAATATTTTTAAAATATA-
1 ATATAGTTTTTGAAAATATTTTTAAAATATAT
* *
68455 ATATATGGTTTTAAAAATATTTTTGAAAA-AT-T
1 ATATA-GTTTTTGAAAATATTTTT-AAAATATAT
68487 ATATA
1 ATATA
68492 ATATATAGTT
Statistics
Matches: 170, Mismatches: 20, Indels: 39
0.74 0.09 0.17
Matches are distributed among these distances:
30 5 0.03
31 6 0.04
32 47 0.28
33 18 0.11
34 20 0.12
35 14 0.08
36 28 0.16
37 3 0.02
38 21 0.12
39 7 0.04
40 1 0.01
ACGTcount: A:0.44, C:0.03, G:0.08, T:0.45
Consensus pattern (32 bp):
ATATAGTTTTTGAAAATATTTTTAAAATATAT
Found at i:68372 original size:11 final size:11
Alignment explanation
Indices: 68356--68381 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
68346 ATAATGTATA
68356 ATTTTGAAAAC
1 ATTTTGAAAAC
68367 ATTTTGAAAAC
1 ATTTTGAAAAC
68378 ATTT
1 ATTT
68382 ATATATTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (11 bp):
ATTTTGAAAAC
Found at i:68526 original size:38 final size:35
Alignment explanation
Indices: 68312--68646 Score: 271
Period size: 38 Copynumber: 9.5 Consensus size: 35
68302 GACTTTCAAA
*
68312 ATAT-ATATATAGTTTTTGAAAATATTTTT-AAA--
1 ATATAATATATAG-TTTTAAAAATATTTTTAAAATT
* * * * *
68344 ATATAATGTATAATTTTGAAAACATTTTGAAAACATTT
1 ATATAATATATAGTTTTAAAAATATTTT-TAAA-A-TT
* * * *
68382 ATATATTGTATAGTTTTTAAAATATTTTGAAAACTT
1 ATATAATATATAGTTTTAAAAATATTTTTAAAA-TT
*
68418 ATATAATATATAGTTTTTAAAATATTTTT-AAA--
1 ATATAATATATAGTTTTAAAAATATTTTTAAAATT
*
68450 ATATAATATATGGTTTTAAAAATATTTTTGAAAAATT
1 ATATAATATATAGTTTTAAAAATATTTTT--AAAATT
68487 ATATAATATATAG-TTTAAAAATATTTTTTTGAAAGATT
1 ATATAATATATAGTTTTAAAAATA--TTTTT-AAA-ATT
* *
68525 ATATAATATATAGTTTTAAAAACATTTTTAAAAAGT
1 ATATAATATATAGTTTTAAAAATATTTTT-AAAATT
* *
68561 ATATAATATATAGTTTTAAAAACATTTTTTTAAAACTC
1 ATATAATATATAGTTTT-AAAA-ATATTTTTAAAA-TT
** * *
68599 ATATAATAT-T--TTTTAATCAT-TTTTGAAAACT
1 ATATAATATATAGTTTTAAAAATATTTTTAAAATT
68630 ATATAATATATAGTTTT
1 ATATAATATATAGTTTT
68647 GGAAAATTTT
Statistics
Matches: 252, Mismatches: 29, Indels: 42
0.78 0.09 0.13
Matches are distributed among these distances:
31 9 0.04
32 54 0.21
33 8 0.03
34 8 0.03
35 11 0.04
36 58 0.23
37 35 0.14
38 60 0.24
39 9 0.04
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (35 bp):
ATATAATATATAGTTTTAAAAATATTTTTAAAATT
Found at i:68657 original size:143 final size:141
Alignment explanation
Indices: 68380--68645 Score: 333
Period size: 143 Copynumber: 1.9 Consensus size: 141
68370 TTGAAAACAT
* * * * ** *
68380 TTATATATTGTATAGTTTTTAAAATATTTTGAAAACTTATATAATATATAGTTTTTAAAATATTT
1 TTATATAATATATAGTTTTAAAAACATTTTGAAAAAGTATATAATATATAGTTTTAAAAATATTT
*
68445 TTAAAATATAATATATGGTTTTAAAAATATTTTTGAAAAATTATATAATATATAGTTTAAAAATA
66 TTAAAATATAATATAT-GTTTT-AAAATATTTTTGAAAAACTATATAATATATAGTTTAAAAATA
68510 TTTTTTTGAAAGA
129 TTTTTTTGAAAGA
* *
68523 TTATATAATATATAGTTTTAAAAACATTTTTAAAAAGTATATAATATATAGTTTTAAAAACATTT
1 TTATATAATATATAGTTTTAAAAACATTTTGAAAAAGTATATAATATATAGTTTT-AAAA-ATAT
*
68588 TTTTAAAACTCAT-ATAATAT-TTTT-TAATCATTTTTG-AAAACTATATAATATATAGTTT
64 TTTTAAAA-T-ATAAT-ATATGTTTTAAAAT-ATTTTTGAAAAACTATATAATATATAGTTT
68646 TGGAAAATTT
Statistics
Matches: 106, Mismatches: 11, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
143 72 0.68
144 10 0.09
145 15 0.14
146 3 0.03
147 6 0.06
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.48
Consensus pattern (141 bp):
TTATATAATATATAGTTTTAAAAACATTTTGAAAAAGTATATAATATATAGTTTTAAAAATATTT
TTAAAATATAATATATGTTTTAAAATATTTTTGAAAAACTATATAATATATAGTTTAAAAATATT
TTTTTGAAAGA
Found at i:68730 original size:16 final size:16
Alignment explanation
Indices: 68697--68742 Score: 60
Period size: 16 Copynumber: 3.0 Consensus size: 16
68687 TTTTTGAAAT
68697 GTATATATTA-TA-TA
1 GTATATATTATTATTA
*
68711 GTATATATTATTATTG
1 GTATATATTATTATTA
*
68727 GTATTTATTATTATTA
1 GTATATATTATTATTA
68743 TTTCTTTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
14 10 0.37
15 2 0.07
16 15 0.56
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.57
Consensus pattern (16 bp):
GTATATATTATTATTA
Found at i:70251 original size:18 final size:18
Alignment explanation
Indices: 70206--70273 Score: 59
Period size: 18 Copynumber: 3.8 Consensus size: 18
70196 TTTTGATTTC
*
70206 TTTAATTTT-CTTTTTAT
1 TTTATTTTTCCTTTTTAT
*
70223 TTTTTCCTTTTCCTTTTTAT
1 TTTAT--TTTTCCTTTTTAT
* **
70243 TTTATTTTTACTTTACAT
1 TTTATTTTTCCTTTTTAT
70261 TTTA-TTTTCCTTT
1 TTTATTTTTCCTTT
70274 CTTTTGATTA
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
17 11 0.27
18 14 0.34
19 4 0.10
20 12 0.29
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTATTTTTCCTTTTTAT
Found at i:70324 original size:22 final size:21
Alignment explanation
Indices: 70294--70334 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
70284 CTTAATCTAT
* *
70294 TTTTTATTTATCTTACTTTTCC
1 TTTTGATTTAT-TTAATTTTCC
70316 TTTTGATTTATTTAATTTT
1 TTTTGATTTATTTAATTTT
70335 TTCTTTTGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.17, C:0.10, G:0.02, T:0.71
Consensus pattern (21 bp):
TTTTGATTTATTTAATTTTCC
Found at i:80294 original size:2 final size:2
Alignment explanation
Indices: 80287--80311 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
80277 TACCAACCAA
80287 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
80312 TTCCTTTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:80799 original size:51 final size:50
Alignment explanation
Indices: 80708--80849 Score: 153
Period size: 51 Copynumber: 2.8 Consensus size: 50
80698 GCATACTACA
* * ** * *
80708 AAAAAATTTAACAATTAACATATACTTAA-ATTGGTGTAAGTGAATAAAAT
1 AAAAAAGTTAACAATTAACACATAC-TAACACCGATATAAGTGAATAAAAT
*
80758 AAAAAAGTGTAACAATTAACACA-AGCTTACACCGATATAAGTGAATAAAAT
1 AAAAAAGT-TAACAATTAACACATA-CTAACACCGATATAAGTGAATAAAAT
* * *
80809 AAAAAAGTTATCACTTAACACATACTAACACCGGTATAAGT
1 AAAAAAGTTAACAATTAACACATACTAACACCGATATAAGT
80850 CTGTACATAT
Statistics
Matches: 77, Mismatches: 11, Indels: 8
0.80 0.11 0.08
Matches are distributed among these distances:
50 37 0.48
51 40 0.52
ACGTcount: A:0.51, C:0.13, G:0.11, T:0.26
Consensus pattern (50 bp):
AAAAAAGTTAACAATTAACACATACTAACACCGATATAAGTGAATAAAAT
Found at i:80840 original size:50 final size:51
Alignment explanation
Indices: 80744--80849 Score: 153
Period size: 50 Copynumber: 2.1 Consensus size: 51
80734 TAAATTGGTG
*
80744 TAAGTGAATAAAATAAAAAAGTGTAACAATTAACACAAGCTTACACCGATA
1 TAAGTGAATAAAATAAAAAAGTGTAACAATTAACACAAGCTAACACCGATA
* * *
80795 TAAGTGAATAAAATAAAAAAGT-TATCACTTAACACATA-CTAACACCGGTA
1 TAAGTGAATAAAATAAAAAAGTGTAACAATTAACACA-AGCTAACACCGATA
80845 TAAGT
1 TAAGT
80850 CTGTACATAT
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
50 27 0.54
51 23 0.46
ACGTcount: A:0.51, C:0.14, G:0.11, T:0.24
Consensus pattern (51 bp):
TAAGTGAATAAAATAAAAAAGTGTAACAATTAACACAAGCTAACACCGATA
Found at i:83423 original size:55 final size:55
Alignment explanation
Indices: 83363--83485 Score: 210
Period size: 55 Copynumber: 2.2 Consensus size: 55
83353 ATCCAATTGA
83363 ATCAATTAATTAAAGGGTGGGGGTGGCAATGCAGATTTGGAAAGCCAATTAAATG
1 ATCAATTAATTAAAGGGTGGGGGTGGCAATGCAGATTTGGAAAGCCAATTAAATG
* *
83418 ATCAATTAATTAAAGGGTGGGGGTGGCAATGCGGATTTGGAAAGCCAATTGAATG
1 ATCAATTAATTAAAGGGTGGGGGTGGCAATGCAGATTTGGAAAGCCAATTAAATG
* *
83473 ATTAATTGATTAA
1 ATCAATTAATTAA
83486 GTATTTTGAC
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 64 1.00
ACGTcount: A:0.36, C:0.08, G:0.28, T:0.28
Consensus pattern (55 bp):
ATCAATTAATTAAAGGGTGGGGGTGGCAATGCAGATTTGGAAAGCCAATTAAATG
Found at i:83718 original size:156 final size:156
Alignment explanation
Indices: 83545--83897 Score: 462
Period size: 156 Copynumber: 2.3 Consensus size: 156
83535 TTCATCTTTC
* * * *
83545 ATTTTAAGTCTAATTTTTTATTAAATTTGAACAACATGCTCCTAAACCA-CCTAGAATACATATG
1 ATTTCAAGTCTATTTTTTTACTAAATTTGAACCACATGCTCCTAAACCATCCTAGAATACATATG
* * *
83609 TACTTTCAATTCATCTTTTTGAAAATAAATTTTCTATTTTTAATTTAGTCCCTC-ATTTTTCACA
66 TACTTTCAATTCATCTTTTTGAAAACAAA--TT-TATTTTCAATTTAATCCCTCAATTTTTCACA
*
83673 ATTTTCTTA-TTTCTTCAATTCACCATTT
128 ATTTACTTATTTTCTTCAATTCACCATTT
* * * * *
83701 ATTTCAA-TTTCATTTTTTTACTAAATTTGAACCACATGCTTCTAAATCATCGTAGAATATATAT
1 ATTTCAAGTCT-ATTTTTTTACTAAATTTGAACCACATGCTCCTAAACCATCCTAGAATACATAT
* * *
83765 GTACTTTCAATTCCTCTTTTTGATAACAAATTTATTTTCAATTTAATCCCTCAATTTTTCATAAT
65 GTACTTTCAATTCATCTTTTTGAAAACAAATTTATTTTCAATTTAATCCCTCAATTTTTCACAAT
* *
83830 TTACTTATTTTTTTCAATTCACCCTTT
130 TTACTTATTTTCTTCAATTCACCATTT
* *
83857 ATTTCAAGTCTATTTTTTTACCAATTTTGAACCACATGCTC
1 ATTTCAAGTCTATTTTTTTACTAAATTTGAACCACATGCTC
83898 ATTACCACAA
Statistics
Matches: 170, Mismatches: 22, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
154 18 0.11
155 21 0.12
156 90 0.53
157 41 0.24
ACGTcount: A:0.30, C:0.18, G:0.05, T:0.47
Consensus pattern (156 bp):
ATTTCAAGTCTATTTTTTTACTAAATTTGAACCACATGCTCCTAAACCATCCTAGAATACATATG
TACTTTCAATTCATCTTTTTGAAAACAAATTTATTTTCAATTTAATCCCTCAATTTTTCACAATT
TACTTATTTTCTTCAATTCACCATTT
Found at i:86135 original size:21 final size:20
Alignment explanation
Indices: 86111--86150 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
86101 TATGGGTTTT
*
86111 AGTATCGATACTAGGATGAAC
1 AGTATCAATACT-GGATGAAC
*
86132 AGTATCAATCCTGGATGAA
1 AGTATCAATACTGGATGAA
86151 TTAGGGAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.25
Consensus pattern (20 bp):
AGTATCAATACTGGATGAAC
Found at i:87408 original size:27 final size:23
Alignment explanation
Indices: 87376--87446 Score: 70
Period size: 23 Copynumber: 2.8 Consensus size: 23
87366 ATAATGGTTT
*
87376 TGAATCATTCAGAATGTACTTTAATGC
1 TGAATCATTCA-AAAGT-CTTT--TGC
*
87403 TGAATCATTCAAAAGTGTTTTGC
1 TGAATCATTCAAAAGTCTTTTGC
87426 TGAATCATTCAACATAGTCTT
1 TGAATCATTCAA-A-AGTCTT
87447 CATTCAAAGG
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
23 15 0.38
24 1 0.03
25 8 0.21
26 4 0.10
27 11 0.28
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.38
Consensus pattern (23 bp):
TGAATCATTCAAAAGTCTTTTGC
Found at i:87503 original size:22 final size:22
Alignment explanation
Indices: 87478--87519 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
87468 CACGCTGAAT
87478 GCTGAACGGTTCAACATTCAGC
1 GCTGAACGGTTCAACATTCAGC
*
87500 GCTGAATGGTTCAACATTCA
1 GCTGAACGGTTCAACATTCA
87520 ACAGTAAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (22 bp):
GCTGAACGGTTCAACATTCAGC
Found at i:93292 original size:28 final size:28
Alignment explanation
Indices: 93259--93328 Score: 131
Period size: 28 Copynumber: 2.5 Consensus size: 28
93249 TTACATGAAA
93259 CATGTGATATATGATATGAGATCTGACC
1 CATGTGATATATGATATGAGATCTGACC
93287 CATGTGATATATGATATGAGATCTGACC
1 CATGTGATATATGATATGAGATCTGACC
93315 CATGTGATCATATG
1 CATGTGAT-ATATG
93329 TGAAATTTGT
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
28 36 0.88
29 5 0.12
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.33
Consensus pattern (28 bp):
CATGTGATATATGATATGAGATCTGACC
Found at i:93561 original size:34 final size:34
Alignment explanation
Indices: 93518--93585 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
93508 TGTGGTGACA
93518 ACATATGTGCACAACCTCTATGTACTCACATATT
1 ACATATGTGCACAACCTCTATGTACTCACATATT
93552 ACATATGTGCACAACCTCTATGTACTCACATATT
1 ACATATGTGCACAACCTCTATGTACTCACATATT
93586 TTTAGTTCTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.32, C:0.26, G:0.09, T:0.32
Consensus pattern (34 bp):
ACATATGTGCACAACCTCTATGTACTCACATATT
Found at i:99901 original size:23 final size:23
Alignment explanation
Indices: 99871--99922 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
99861 TGGGAGAATG
***
99871 ATGTGGCACTTAGTTGCAAACCT
1 ATGTGGCACTTAGACACAAACCT
*
99894 ATGTGGCACTTCGACACAAACCT
1 ATGTGGCACTTAGACACAAACCT
99917 ATGTGG
1 ATGTGG
99923 TCCTTGGGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (23 bp):
ATGTGGCACTTAGACACAAACCT
Found at i:105236 original size:20 final size:22
Alignment explanation
Indices: 105187--105240 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
105177 GATATGAGAA
*
105187 AGGTATCGGTACCATAGTATAG
1 AGGTATCGATACCATAGTATAG
* *
105209 AAGTATCGATACCATGGTA-AG
1 AGGTATCGATACCATAGTATAG
105230 -GGTATCGATAC
1 AGGTATCGATAC
105241 TATTGAGCCT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 10 0.36
21 2 0.07
22 16 0.57
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (22 bp):
AGGTATCGATACCATAGTATAG
Found at i:105693 original size:44 final size:44
Alignment explanation
Indices: 105643--105825 Score: 278
Period size: 44 Copynumber: 4.2 Consensus size: 44
105633 TAAAACGAAT
* *
105643 CCATAAATGAAATGCATAACGGTGCATTAAGACATTAAAGGATG
1 CCATAAATGAAATGCATAACGGTGCATTAAGGCATGAAAGGATG
* *
105687 CCATAAATGAAATGCATAACGGCGCATTAAGGCATTAAA-GATG
1 CCATAAATGAAATGCATAACGGTGCATTAAGGCATGAAAGGATG
* * * * *
105730 CCATAAATAAAATACATAACGGTGCATTATGGCAAGAAATGATG
1 CCATAAATGAAATGCATAACGGTGCATTAAGGCATGAAAGGATG
105774 CCATAAATGAAATGCATAACGGTGCATTAAGGCATGAAAGGATG
1 CCATAAATGAAATGCATAACGGTGCATTAAGGCATGAAAGGATG
105818 CCATAAAT
1 CCATAAAT
105826 ACAAATAATG
Statistics
Matches: 125, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
43 37 0.30
44 88 0.70
ACGTcount: A:0.43, C:0.15, G:0.20, T:0.22
Consensus pattern (44 bp):
CCATAAATGAAATGCATAACGGTGCATTAAGGCATGAAAGGATG
Found at i:105750 original size:87 final size:88
Alignment explanation
Indices: 105643--105832 Score: 283
Period size: 87 Copynumber: 2.2 Consensus size: 88
105633 TAAAACGAAT
* * **
105643 CCATAAATGAAATGCATAACGGTGCATTAAGACATTAAAGGATGCCATAAATGAAATGCATAACG
1 CCATAAATAAAATACATAACGGTGCATTAAGACAAGAAAGGATGCCATAAATGAAATGCATAACG
*
105708 GCGCATTAAGGCATTAAA-GATG
66 GCGCATTAAGGCATGAAAGGATG
* * *
105730 CCATAAATAAAATACATAACGGTGCATTATGGCAAGAAATGATGCCATAAATGAAATGCATAACG
1 CCATAAATAAAATACATAACGGTGCATTAAGACAAGAAAGGATGCCATAAATGAAATGCATAACG
*
105795 GTGCATTAAGGCATGAAAGGATG
66 GCGCATTAAGGCATGAAAGGATG
105818 CCATAAATACAAATA
1 CCATAAATA-AAATA
105833 ATGAAAAATT
Statistics
Matches: 92, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
87 74 0.80
88 13 0.14
89 5 0.05
ACGTcount: A:0.44, C:0.15, G:0.19, T:0.22
Consensus pattern (88 bp):
CCATAAATAAAATACATAACGGTGCATTAAGACAAGAAAGGATGCCATAAATGAAATGCATAACG
GCGCATTAAGGCATGAAAGGATG
Found at i:107797 original size:299 final size:299
Alignment explanation
Indices: 106911--107803 Score: 1573
Period size: 294 Copynumber: 3.0 Consensus size: 299
106901 ATACACTGTT
106911 GTATCAAGTAATAAATTGGATGCAAATTAATGTATCGAGTATTGTATTCATAGAGACTAATATTA
1 GTATCAAGTAATAAATTGGATGCAAATTAATGTATCGAGTATTGTATTCATAGAGACTAATATTA
106976 CTTAGAGAATTGCTATAGCATTTAGTTAGTAAAATAACAGAATTGTATATGTGATGCTATAAACA
66 CTTAGAGAATTGCTATAGCATTTAGTTAGTAAAATAACAGAATTGTATA-GTGATGCTATAAACA
* *
107041 AAGAAATAAAAATACAAAAGCTAAAATAAATATGTGAATAAAGATATTAAGGGATGAAGGGAATC
130 AAGAAATAAAAATACAAAAGCTAAAATAAATATGCGAATAAAGATATTAAGGGATAAAGGGAATC
*
107106 ACAACACTGGCAATGAAAGCAGTGGAACGACTCAAGCTAAAGATTATGGTATTGTTAAACTCAAT
195 ACAACACTGGCAATGAAAGCAGTGGAACGACCCAAGCTAAAGATTATGGTATTGTTAAACTCAAT
* *
107171 CATGCAATTAACAATGCCATAACAATACGATCAATGCGTC
260 CATGCAATTAACGATGCCACAACAATACGATCAATGCGTC
*
107211 GTATCAAGTAATAAATTGGATGCAAATTAATGTATCTAGTATTGTATTCATAGAGACTAATATTA
1 GTATCAAGTAATAAATTGGATGCAAATTAATGTATCGAGTATTGTATTCATAGAGACTAATATTA
*
107276 CTTAGAGAATTGTTATAGCATTTAGTTAGTAAAATAACAGAATTGTAT-GTGATGCTATAAACAA
66 CTTAGAGAATTGCTATAGCATTTAGTTAGTAAAATAACAGAATTGTATAGTGATGCTATAAACAA
107340 AGAAATAAAAATACAAAAGCT---A-AAATATGCGAATAAAGATATTAAGGGATAAAGGGAATCA
131 AGAAATAAAAATACAAAAGCTAAAATAAATATGCGAATAAAGATATTAAGGGATAAAGGGAATCA
* * * *
107401 CAACACTGGCAATGAAAGCAGTGGAACGATCCAAGCTAAAAATTATAGTATTGTCAAACTCAATC
196 CAACACTGGCAATGAAAGCAGTGGAACGACCCAAGCTAAAGATTATGGTATTGTTAAACTCAATC
107466 ATGCAATTAACGATGCCACAACAATACGATCAATGCGTC
261 ATGCAATTAACGATGCCACAACAATACGATCAATGCGTC
107505 GTATCAAGTAATAAATTGGATGCAAATTAATGTATCGAGTATTGTATTCATAGAGACTAATATTA
1 GTATCAAGTAATAAATTGGATGCAAATTAATGTATCGAGTATTGTATTCATAGAGACTAATATTA
* *
107570 CTTAGAGAATTGCTATAGCATTTAGTTAGTAAAATAACATAATTATATAGGTGATGCTATAAACA
66 CTTAGAGAATTGCTATAGCATTTAGTTAGTAAAATAACAGAATTGTATA-GTGATGCTATAAACA
*
107635 AAGAAAT-AAAATACAAAAGCTAAAATAAATATGCGAATAAAGATATTAAGGGATAAAGGAAATC
130 AAGAAATAAAAATACAAAAGCTAAAATAAATATGCGAATAAAGATATTAAGGGATAAAGGGAATC
* *
107699 ACAACACTGACAATGAAAGCAGTGGAATGACCCAAGCTAAAGATTATGGTATTGTTAAACTCAAT
195 ACAACACTGGCAATGAAAGCAGTGGAACGACCCAAGCTAAAGATTATGGTATTGTTAAACTCAAT
*
107764 CATGCAATTAACGACGCCACAACAATACGATCAATGCGTC
260 CATGCAATTAACGATGCCACAACAATACGATCAATGCGTC
107804 TAGCATTAGC
Statistics
Matches: 564, Mismatches: 23, Indels: 13
0.94 0.04 0.02
Matches are distributed among these distances:
294 243 0.43
295 15 0.03
296 22 0.04
298 38 0.07
299 135 0.24
300 111 0.20
ACGTcount: A:0.44, C:0.12, G:0.17, T:0.27
Consensus pattern (299 bp):
GTATCAAGTAATAAATTGGATGCAAATTAATGTATCGAGTATTGTATTCATAGAGACTAATATTA
CTTAGAGAATTGCTATAGCATTTAGTTAGTAAAATAACAGAATTGTATAGTGATGCTATAAACAA
AGAAATAAAAATACAAAAGCTAAAATAAATATGCGAATAAAGATATTAAGGGATAAAGGGAATCA
CAACACTGGCAATGAAAGCAGTGGAACGACCCAAGCTAAAGATTATGGTATTGTTAAACTCAATC
ATGCAATTAACGATGCCACAACAATACGATCAATGCGTC
Found at i:110871 original size:163 final size:165
Alignment explanation
Indices: 110601--110929 Score: 644
Period size: 163 Copynumber: 2.0 Consensus size: 165
110591 GTGAGTTATC
110601 TCTTTTTAACATCAATCAATGTTCATCTAATAGAAAAGAATGGTCTTTCTAGTATTATGGGCATC
1 TCTTTTTAACATCAATCAATGTTCATCTAATAGAAAAGAATGGTCTTTCTAGTATTATGGGCATC
110666 TTTTTGTTAGCTTCGCAGTCCAAGACAATAAAGTCCACCGGATAGATAAATTTATCCACTCGTAT
66 TTTTTGTTAGCTTCGCAGTCCAAGACAATAAAGTCCACCGGATAGATAAATTTATCCACTCGTAT
110731 TAGCACTTTGCC-A-ATTGTCTTCAAGATAGATAG
131 TAGCACTTTGCCAATATTGTCTTCAAGATAGATAG
110764 TCTTTTTAACATCAATCAATGTTCATCTAATAGAAAAGAATGGTCTTTCTAGTATTATGGGCATC
1 TCTTTTTAACATCAATCAATGTTCATCTAATAGAAAAGAATGGTCTTTCTAGTATTATGGGCATC
110829 TTTTTGTTAGCTTCGCAGTCCAAGACAATAAAGTCCACCGGATAGATAAATTTATCCACTCGTAT
66 TTTTTGTTAGCTTCGCAGTCCAAGACAATAAAGTCCACCGGATAGATAAATTTATCCACTCGTAT
110894 TAGCACTTTGCCAATATTGTCTTCAAGATAGATAG
131 TAGCACTTTGCCAATATTGTCTTCAAGATAGATAG
110929 T
1 T
110930 GGATCAGTCG
Statistics
Matches: 164, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
163 142 0.87
164 1 0.01
165 21 0.13
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.35
Consensus pattern (165 bp):
TCTTTTTAACATCAATCAATGTTCATCTAATAGAAAAGAATGGTCTTTCTAGTATTATGGGCATC
TTTTTGTTAGCTTCGCAGTCCAAGACAATAAAGTCCACCGGATAGATAAATTTATCCACTCGTAT
TAGCACTTTGCCAATATTGTCTTCAAGATAGATAG
Found at i:112332 original size:5 final size:5
Alignment explanation
Indices: 112313--112956 Score: 850
Period size: 5 Copynumber: 129.8 Consensus size: 5
112303 GATATCCTCA
* * * *
112313 TAACA TAACG TAACG TAACG TAGCG TAGCG TAACG TAACG TAACG TAGCG
1 TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG
* * * * * *
112363 TAGCG T-ACG T-ACG TAACG TAGCG TAGCG TAGCG TAACG TAGCG TAGCG
1 TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG
* * *
112411 TAACG TAGCG TAGCG TAACG TAACG TAACG TAACG TAACG TAACG TAGCG
1 TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG
* *
112461 TAACG TAACG TAACG TAACG TAACG TAGCG TAACG TAACG TAACG TAGCG
1 TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG
* * *
112511 TAGCG TAACG TAACG TAACG TAGCG TAACG TAACG TAACG TAGCG TAACG
1 TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG
* * * * * * * * *
112561 TAGCG TAACG TAGCG TAGCG TAGCG TAGCG TAGCG TAGCG TAGCG TAGCG
1 TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG
* * * * * * * * * *
112611 TAGCG TAGCG TAGCG TAGCG TAGCG TAGCG TAGCG TAGCG TAGCG TAGCG
1 TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG
* * * * * *
112661 TACCG TAGCG TACCG TACCG TAACG TACCG TAACG TAACG TAACG TACCG
1 TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG
112711 TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG
1 TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG
112761 TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG
1 TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG
112811 TAACG TAACG TAACG TAACG TAACG TAAC- TAACG TAACG T-ACG -AACG
1 TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG
112858 TAACG TAACCG TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG
1 TAACG TAA-CG TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG
112909 TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAA-G TAAC
1 TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAACG TAAC
112957 AGAACAGAAA
Statistics
Matches: 601, Mismatches: 32, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
4 21 0.03
5 575 0.96
6 5 0.01
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (5 bp):
TAACG
Found at i:113445 original size:92 final size:92
Alignment explanation
Indices: 113349--113601 Score: 335
Period size: 92 Copynumber: 2.8 Consensus size: 92
113339 ATTTTTCCTG
* * * * *
113349 AGGGATCGATCATATACACAATAGAAAGTTTGGGATCAATCCTTTTGGTCGAGGAATCAATCCTT
1 AGGGATCGATCATATGCACAATAGAAAGTTTGAGATCGATCCTTTTGGTCGAGGGATCGATCCTT
* **
113414 TTTCCTGAGGGATTGATCCTTTTGAAA
66 TTTCATGAGGGATCAATCCTTTTGAAA
* * * * *
113441 AGGGATCGATCCTATGCACAATAAAAATTTTGAAATCGATCCTTTTGGTCGAGGGATGGATCCTT
1 AGGGATCGATCATATGCACAATAGAAAGTTTGAGATCGATCCTTTTGGTCGAGGGATCGATCCTT
113506 TTTCATGAGGGATCAATCCTTTTGAAA
66 TTTCATGAGGGATCAATCCTTTTGAAA
* * * ** *
113533 AGGGATTGATCTTGTGCACAATAGAAAGTTTGAGATCGATTTTTTTGGTCGAGGGATCGGTCCTT
1 AGGGATCGATCATATGCACAATAGAAAGTTTGAGATCGATCCTTTTGGTCGAGGGATCGATCCTT
113598 TTTC
66 TTTC
113602 TAGAATGACT
Statistics
Matches: 138, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
92 138 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.34
Consensus pattern (92 bp):
AGGGATCGATCATATGCACAATAGAAAGTTTGAGATCGATCCTTTTGGTCGAGGGATCGATCCTT
TTTCATGAGGGATCAATCCTTTTGAAA
Found at i:115372 original size:20 final size:20
Alignment explanation
Indices: 115343--115381 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
115333 TTTCCACCAC
*
115343 ATGCAACTATATGCTCCTAA
1 ATGCAACTATATGATCCTAA
*
115363 ATGCATCTATATGATCCTA
1 ATGCAACTATATGATCCTA
115382 TATGAGCTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.23, G:0.10, T:0.33
Consensus pattern (20 bp):
ATGCAACTATATGATCCTAA
Found at i:117754 original size:33 final size:33
Alignment explanation
Indices: 117707--117777 Score: 108
Period size: 33 Copynumber: 2.2 Consensus size: 33
117697 ACAAAGTTTA
* * *
117707 CGAT-AATTGAAATACTTAAATACTTCCAAGTT
1 CGATAAATTCAAATACTTAAAAACTTACAAGTT
117739 CGATAAATTCAAATACTTAAAAACTTACAAGTT
1 CGATAAATTCAAATACTTAAAAACTTACAAGTT
117772 CGATAA
1 CGATAA
117778 TTTAAACAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
32 4 0.11
33 31 0.89
ACGTcount: A:0.45, C:0.15, G:0.08, T:0.31
Consensus pattern (33 bp):
CGATAAATTCAAATACTTAAAAACTTACAAGTT
Found at i:117797 original size:21 final size:21
Alignment explanation
Indices: 117772--117813 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
117762 CTTACAAGTT
*
117772 CGATAATTTAAACAAAGTTTA
1 CGATAATTGAAACAAAGTTTA
117793 CGATAATTGAAACAAAGTTTA
1 CGATAATTGAAACAAAGTTTA
117814 AAAATAAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.48, C:0.10, G:0.12, T:0.31
Consensus pattern (21 bp):
CGATAATTGAAACAAAGTTTA
Found at i:132934 original size:23 final size:23
Alignment explanation
Indices: 132904--132962 Score: 91
Period size: 23 Copynumber: 2.6 Consensus size: 23
132894 GTCGAGGGTT
132904 CTATGTGGTCCTTCGCGAAAAAA
1 CTATGTGGTCCTTCGCGAAAAAA
* * *
132927 CTATGTGGTCTTTCGGGACAAAA
1 CTATGTGGTCCTTCGCGAAAAAA
132950 CTATGTGGTCCTT
1 CTATGTGGTCCTT
132963 TAGGACAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (23 bp):
CTATGTGGTCCTTCGCGAAAAAA
Found at i:132968 original size:23 final size:23
Alignment explanation
Indices: 132904--132970 Score: 75
Period size: 23 Copynumber: 2.9 Consensus size: 23
132894 GTCGAGGGTT
* *
132904 CTATGTGGTCC-TTCGCGAAAAAA
1 CTATGTGGTCCTTTAG-GACAAAA
*
132927 CTATGTGGT-CTTTCGGGACAAAA
1 CTATGTGGTCCTTT-AGGACAAAA
132950 CTATGTGGTCCTTTAGGACAA
1 CTATGTGGTCCTTTAGGACAA
132971 TTATGTGGCA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
22 1 0.03
23 32 0.84
24 5 0.13
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (23 bp):
CTATGTGGTCCTTTAGGACAAAA
Found at i:139797 original size:24 final size:22
Alignment explanation
Indices: 139770--139850 Score: 99
Period size: 23 Copynumber: 3.5 Consensus size: 22
139760 ATCGAGGGTT
139770 CTATGTGGTCCATCAGGACAAAA
1 CTATGTGGTCCATC-GGACAAAA
* **
139793 CCTATGTGTTCTTTCGGAGCAAAA
1 -CTATGTGGTCCATCGGA-CAAAA
139817 CTATGTGGTCCATCGGGACAAAA
1 CTATGTGGTCCATC-GGACAAAA
139840 CTATGTGGTCC
1 CTATGTGGTCC
139851 TTCGAGATAA
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
23 30 0.61
24 19 0.39
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Consensus pattern (22 bp):
CTATGTGGTCCATCGGACAAAA
Found at i:146173 original size:12 final size:12
Alignment explanation
Indices: 146156--146190 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
146146 AGAATAAGTC
146156 CTTGCAACTCGT
1 CTTGCAACTCGT
146168 CTTGCAACTCGT
1 CTTGCAACTCGT
146180 CTTGCAACTCG
1 CTTGCAACTCG
146191 AAAACTTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.17, C:0.34, G:0.17, T:0.31
Consensus pattern (12 bp):
CTTGCAACTCGT
Found at i:150752 original size:91 final size:92
Alignment explanation
Indices: 150628--150794 Score: 237
Period size: 91 Copynumber: 1.8 Consensus size: 92
150618 GGTTCGATCA
* * *
150628 TATGCACAATAGAAAGTTCGAGATCGATCCTTTTGGTCGA-GGATTGGTCCTTTTTCCCAAGGGA
1 TATGCACAATAGAAAGTTCGAGATCGATCCTTTTGGTCGAGGGATCGATCCTTTTGCCCAAGGGA
150692 TCGATCCTTTTGAAAAAAGATTGACCT
66 TCGATCCTTTTGAAAAAAGATTGACCT
* * * * ** *
150719 TATGCACAATAGAAGGTTTGGGATCGATCCTTTTGGTTGAGGGATCGATCCTTTTGGTCGAGGGA
1 TATGCACAATAGAAAGTTCGAGATCGATCCTTTTGGTCGAGGGATCGATCCTTTTGCCCAAGGGA
150784 TCGATCCTTTT
66 TCGATCCTTTT
150795 TCCTGATGGA
Statistics
Matches: 65, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
91 36 0.55
92 29 0.45
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (92 bp):
TATGCACAATAGAAAGTTCGAGATCGATCCTTTTGGTCGAGGGATCGATCCTTTTGCCCAAGGGA
TCGATCCTTTTGAAAAAAGATTGACCT
Found at i:150762 original size:21 final size:21
Alignment explanation
Indices: 150738--150794 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
150728 TAGAAGGTTT
*
150738 GGGATCGATCCTTTTGGTTGA
1 GGGATCGATCCTTTTGGTCGA
150759 GGGATCGATCCTTTTGGTCGA
1 GGGATCGATCCTTTTGGTCGA
150780 GGGATCGATCCTTTT
1 GGGATCGATCCTTTT
150795 TCCTGATGGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.14, C:0.18, G:0.32, T:0.37
Consensus pattern (21 bp):
GGGATCGATCCTTTTGGTCGA
Found at i:150805 original size:21 final size:20
Alignment explanation
Indices: 150738--150806 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 20
150728 TAGAAGGTTT
150738 GGGATCGATCCTTTTGGT-TGA
1 GGGATCGATCCTTTT--TCTGA
150759 GGGATCGATCCTTTTGGTC-GA
1 GGGATCGATCCTTTT--TCTGA
150780 GGGATCGATCCTTTTTCCTGA
1 GGGATCGATCCTTTTT-CTGA
*
150801 TGGATC
1 GGGATC
150807 AATCATTTTA
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
19 1 0.02
20 1 0.02
21 42 0.95
ACGTcount: A:0.14, C:0.19, G:0.30, T:0.36
Consensus pattern (20 bp):
GGGATCGATCCTTTTTCTGA
Found at i:150851 original size:113 final size:112
Alignment explanation
Indices: 150649--150886 Score: 289
Period size: 113 Copynumber: 2.1 Consensus size: 112
150639 GAAAGTTCGA
* * * * *
150649 GATCGATCCTTTTGGTCGAGGATTGGTCCTTTTTCCCAAGGGATCGATCCTTTTGAAAAAAGATT
1 GATCGATCCTTTTGGTCGAGGATCGATCCTTTTTCCCAAGGGATCAATCATTTTGAAAAAAGATC
* * * *
150714 GACCTTATGCACAATAGAAGGTTTGGGATCGATCCTTTTGGTTGAGG
66 AACCATATGCACAATAGAAAGTTTGGGATCGATCCTTTTGGTCGAGG
** * *
150761 GATCGATCCTTTTGGTCGAGGGATCGATCCTTTTTCCTGATGGATCAATCATTTT-AAAAAGGGA
1 GATCGATCCTTTTGGTCGA-GGATCGATCCTTTTTCCCAAGGGATCAATCATTTTGAAAAA-AGA
* * * *
150825 TCAATCATATTCACAATAGAAAGTTTGGGATCGATCTTTTTGGTCGAGT
64 TCAACCATATGCACAATAGAAAGTTTGGGATCGATCCTTTTGGTCGAGG
*
150874 GATCGATCATTTT
1 GATCGATCCTTTT
150887 TCTGGGAATA
Statistics
Matches: 106, Mismatches: 18, Indels: 3
0.83 0.14 0.02
Matches are distributed among these distances:
112 24 0.23
113 82 0.77
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.35
Consensus pattern (112 bp):
GATCGATCCTTTTGGTCGAGGATCGATCCTTTTTCCCAAGGGATCAATCATTTTGAAAAAAGATC
AACCATATGCACAATAGAAAGTTTGGGATCGATCCTTTTGGTCGAGG
Found at i:165894 original size:24 final size:24
Alignment explanation
Indices: 165867--165914 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
165857 GTCTTGAGGG
165867 AGCTGGTAGAAACGTGAACTGTTC
1 AGCTGGTAGAAACGTGAACTGTTC
*
165891 AGCTGGTAGAAACGTGGACTGTTC
1 AGCTGGTAGAAACGTGAACTGTTC
165915 GGTGGAGAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (24 bp):
AGCTGGTAGAAACGTGAACTGTTC
Found at i:168890 original size:24 final size:24
Alignment explanation
Indices: 168846--168891 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
168836 TTGTTCAACT
*
168846 ATGTATTTATTTATTTATTTATAC
1 ATGTATTTATTTATATATTTATAC
*
168870 ATGTATTGTATTT-TATCTTTAT
1 ATGTATT-TATTTATATATTTAT
168892 TTTTAATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 14 0.74
25 5 0.26
ACGTcount: A:0.26, C:0.04, G:0.07, T:0.63
Consensus pattern (24 bp):
ATGTATTTATTTATATATTTATAC
Found at i:169348 original size:46 final size:45
Alignment explanation
Indices: 169288--169387 Score: 173
Period size: 46 Copynumber: 2.2 Consensus size: 45
169278 CTCTAATGAT
169288 TAAAAAAATTATTTTTTATGATCTTTAGAATTAAAGTCAACCTTC
1 TAAAAAAATTATTTTTTATGATCTTTAGAATTAAAGTCAACCTTC
* *
169333 TAAAATAATTTATTTTTTATGGTCTTTAGAATTAAAGTCAACCTTC
1 TAAAA-AAATTATTTTTTATGATCTTTAGAATTAAAGTCAACCTTC
169379 TAAAAAAAT
1 TAAAAAAAT
169388 CATGGGACCT
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
45 8 0.16
46 43 0.84
ACGTcount: A:0.41, C:0.10, G:0.07, T:0.42
Consensus pattern (45 bp):
TAAAAAAATTATTTTTTATGATCTTTAGAATTAAAGTCAACCTTC
Found at i:178961 original size:26 final size:26
Alignment explanation
Indices: 178906--178964 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
178896 AACATGTATG
* *
178906 ATAAAATTTTATAGTACATAGATTAA
1 ATAAAATTTTATAGTAAATAGATAAA
178932 ATAAAATTTTATAGTAAATAGA-AAA
1 ATAAAATTTTATAGTAAATAGATAAA
178957 TATAAAAT
1 -ATAAAAT
178965 ACATATACGA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 2 0.07
26 28 0.93
ACGTcount: A:0.56, C:0.02, G:0.07, T:0.36
Consensus pattern (26 bp):
ATAAAATTTTATAGTAAATAGATAAA
Found at i:185225 original size:130 final size:130
Alignment explanation
Indices: 184977--185236 Score: 479
Period size: 130 Copynumber: 2.0 Consensus size: 130
184967 CTACACCGTT
184977 ACGCCAAACATCGCTTTCGTTTCGGCACCTACAACTGTGGCAATGAGGATCGTTGATAGTAGAAA
1 ACGCCAAACATCGCTTTCGTTTCGGCACCTACAACTGTGGCAATGAGGATCGTTGATAGTAGAAA
185042 GTAGCCAAGAGGCAAGAGCACTATCCTGAGCAACACAAAACTTTCATAGTCGTCATTGACAAAAA
66 GTAGCCAAGAGGCAAGAGCACTATCCTGAGCAACACAAAACTTTCATAGTCGTCATTGACAAAAA
185107 ACGCCAAACATCGCTTTCGTTTCGGCACCTACAAACTGTGGCAATAGAGGATCGTTGATAGTAGA
1 ACGCCAAACATCGCTTTCGTTTCGGCACCTAC-AACTGTGGCAAT-GAGGATCGTTGATAGTAGA
*
185172 AAGTAGCCAAGATGCAAGAGCACTATCCTGAGC-A-ACAAAACTTTCATAGTCGTCATTGACAAA
64 AAGTAGCCAAGAGGCAAGAGCACTATCCTGAGCAACACAAAACTTTCATAGTCGTCATTGACAAA
185235 AA
129 AA
185237 GTGCACCTGA
Statistics
Matches: 127, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
130 63 0.50
131 13 0.10
132 51 0.40
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (130 bp):
ACGCCAAACATCGCTTTCGTTTCGGCACCTACAACTGTGGCAATGAGGATCGTTGATAGTAGAAA
GTAGCCAAGAGGCAAGAGCACTATCCTGAGCAACACAAAACTTTCATAGTCGTCATTGACAAAAA
Found at i:189031 original size:26 final size:26
Alignment explanation
Indices: 188977--189046 Score: 95
Period size: 26 Copynumber: 2.7 Consensus size: 26
188967 CTGACTAGAT
* *
188977 CTTCTAGAAAACTGCCGCTGACTGAAC
1 CTTCTAG-AAACTGCCACTGAATGAAC
* *
189004 CTTCTAGAAACTGCCATTGAATGGAC
1 CTTCTAGAAACTGCCACTGAATGAAC
189030 CTTCTAGAAACTGCCAC
1 CTTCTAGAAACTGCCAC
189047 GTTAGACCGT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
26 31 0.82
27 7 0.18
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (26 bp):
CTTCTAGAAACTGCCACTGAATGAAC
Found at i:194564 original size:23 final size:23
Alignment explanation
Indices: 194537--194640 Score: 154
Period size: 23 Copynumber: 4.5 Consensus size: 23
194527 ATTTATATGA
*
194537 CACTTCGGTGCAATTCTACATGG
1 CACTTCGGTGCAATTCTACACGG
* *
194560 CACTTCGGTGCAATTCTACGCGA
1 CACTTCGGTGCAATTCTACACGG
*
194583 CACTTCGGTGCAATTCTACGCGG
1 CACTTCGGTGCAATTCTACACGG
*
194606 CACTTTGGTGCAATTCTACACGG
1 CACTTCGGTGCAATTCTACACGG
*
194629 CACTTCTGTGCA
1 CACTTCGGTGCA
194641 TTTATACGAG
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 73 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (23 bp):
CACTTCGGTGCAATTCTACACGG
Found at i:204576 original size:18 final size:18
Alignment explanation
Indices: 204553--204588 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
204543 ATATAACACA
204553 TATGTCCCGAAGGACCAC
1 TATGTCCCGAAGGACCAC
*
204571 TATGTCCCGAATGACCAC
1 TATGTCCCGAAGGACCAC
204589 ATAACACATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.28, C:0.33, G:0.19, T:0.19
Consensus pattern (18 bp):
TATGTCCCGAAGGACCAC
Found at i:204602 original size:44 final size:45
Alignment explanation
Indices: 204510--204620 Score: 154
Period size: 44 Copynumber: 2.4 Consensus size: 45
204500 GTAGAATTTT
*
204510 TCCCGAAGGACCACGTA-GATCCTGAAAGACCACATATAACACATATG
1 TCCCGAAGGACCAC-TATG-TCCCGAAAGACCACA-ATAACACATATG
*
204557 TCCCGAAGGACCACTATGTCCCGAATGACCAC-ATAACACATATG
1 TCCCGAAGGACCACTATGTCCCGAAAGACCACAATAACACATATG
*
204601 TCCCGAAGGACGACTATGTC
1 TCCCGAAGGACCACTATGTC
204621 TCAAAGGACC
Statistics
Matches: 60, Mismatches: 3, Indels: 5
0.88 0.04 0.07
Matches are distributed among these distances:
44 31 0.52
46 14 0.23
47 15 0.25
ACGTcount: A:0.34, C:0.30, G:0.18, T:0.18
Consensus pattern (45 bp):
TCCCGAAGGACCACTATGTCCCGAAAGACCACAATAACACATATG
Found at i:206691 original size:23 final size:23
Alignment explanation
Indices: 206609--206691 Score: 105
Period size: 23 Copynumber: 3.7 Consensus size: 23
206599 ACATTTTATA
*
206609 TGGCACTTC-GTGTAATTCTACG
1 TGGCACTTCGGTGCAATTCTACG
** *
206631 CAGCACTTCGGTGAAATTCTACG
1 TGGCACTTCGGTGCAATTCTACG
* *
206654 TGGCACTTCGATGCAATTCTACT
1 TGGCACTTCGGTGCAATTCTACG
206677 TGGCACTTCGGTGCA
1 TGGCACTTCGGTGCA
206692 TTTTTACGAG
Statistics
Matches: 51, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
22 7 0.14
23 44 0.86
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.31
Consensus pattern (23 bp):
TGGCACTTCGGTGCAATTCTACG
Found at i:215015 original size:21 final size:21
Alignment explanation
Indices: 214990--215034 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
214980 GATTTTGGTA
* *
214990 AAAAGATATTTAAATGATAAT
1 AAAAGAGATTTAAATGAAAAT
* *
215011 AAAAGCGATTTAAATTAAAAT
1 AAAAGAGATTTAAATGAAAAT
215032 AAA
1 AAA
215035 GAAAAAATTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.60, C:0.02, G:0.09, T:0.29
Consensus pattern (21 bp):
AAAAGAGATTTAAATGAAAAT
Found at i:215922 original size:27 final size:26
Alignment explanation
Indices: 215876--215929 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
215866 CCAGAAGGTG
*
215876 CGCTGACTAGATCTTCTAGAAAATTGC
1 CGCTGACTAGACCTTCTAG-AAATTGC
* *
215903 CGCTGACTGGACCTTTTAGAAATTGC
1 CGCTGACTAGACCTTCTAGAAATTGC
215929 C
1 C
215930 ACGTCAGACC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 8 0.33
27 16 0.67
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
CGCTGACTAGACCTTCTAGAAATTGC
Found at i:217072 original size:51 final size:51
Alignment explanation
Indices: 216994--217091 Score: 187
Period size: 51 Copynumber: 1.9 Consensus size: 51
216984 TTGAACCTAT
*
216994 AATGATGAAAAGACAATTATACTATTTTTCAAATGCTCTCTCATTAAGTTC
1 AATGATGAAAAGACAATTATACCATTTTTCAAATGCTCTCTCATTAAGTTC
217045 AATGATGAAAAGACAATTATACCATTTTTCAAATGCTCTCTCATTAA
1 AATGATGAAAAGACAATTATACCATTTTTCAAATGCTCTCTCATTAA
217092 CTTTAGCCGT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (51 bp):
AATGATGAAAAGACAATTATACCATTTTTCAAATGCTCTCTCATTAAGTTC
Found at i:222994 original size:18 final size:17
Alignment explanation
Indices: 222939--222996 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 17
222929 TTTACATCAT
*
222939 TAATTAT-TATTTTAAGA
1 TAATTATATATATT-AGA
222956 TTAATTATA-ATATTAGTA
1 -TAATTATATATATTAG-A
222974 TAATTATATATATTATGA
1 TAATTATATATATTA-GA
222992 TAATT
1 TAATT
222997 TAAGTTATAT
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
17 10 0.29
18 24 0.69
19 1 0.03
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (17 bp):
TAATTATATATATTAGA
Found at i:236750 original size:16 final size:17
Alignment explanation
Indices: 236725--236760 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
236715 TTTTAAAATG
236725 AAAACAC-AAATTTTGA
1 AAAACACAAAATTTTGA
*
236741 AAAACCCAAAATTTTGA
1 AAAACACAAAATTTTGA
236758 AAA
1 AAA
236761 CTTTCATTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.58, C:0.14, G:0.06, T:0.22
Consensus pattern (17 bp):
AAAACACAAAATTTTGA
Found at i:236761 original size:16 final size:15
Alignment explanation
Indices: 236723--236761 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
236713 TATTTTAAAA
236723 TGAAAACACAAATTT
1 TGAAAACACAAATTT
*
236738 TGAAAAACCCAAAATTT
1 TG-AAAACAC-AAATTT
236755 TGAAAAC
1 TGAAAAC
236762 TTTCATTGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 2 0.10
16 11 0.52
17 8 0.38
ACGTcount: A:0.54, C:0.15, G:0.08, T:0.23
Consensus pattern (15 bp):
TGAAAACACAAATTT
Found at i:237300 original size:69 final size:69
Alignment explanation
Indices: 237176--237384 Score: 296
Period size: 69 Copynumber: 3.0 Consensus size: 69
237166 CCAGGTTATG
* * * *
237176 ACATGTTTCACTTAACGACTAAAATTAAAGGTCCGTCACGGCCTGACCCAGTTTGAATTACGGAA
1 ACATGTTTCACTTAACGGCTAAAATTAACGGTCTGTCACGGCCTGACCCAGTTTGAGTTACGGAA
*
237241 TTAA
66 TAAA
* *
237245 ACATATTTCTCTTAACGGCTAAAATTAACGGTCTGTCACGGCCTGACCCTA-TTTGAGTTACGGA
1 ACATGTTTCACTTAACGGCTAAAATTAACGGTCTGTCACGGCCTGACCC-AGTTTGAGTTACGGA
237309 ATAAA
65 ATAAA
* * *
237314 ACACGTTTCACTTAACGGCTAAAATTAACGAT-TCGTCATGGCCTGACCCAGTTTGAGTTACGGA
1 ACATGTTTCACTTAACGGCTAAAATTAACGGTCT-GTCACGGCCTGACCCAGTTTGAGTTACGGA
237378 ATAAA
65 ATAAA
237383 AC
1 AC
237385 GTTAGGCACC
Statistics
Matches: 125, Mismatches: 12, Indels: 6
0.87 0.08 0.04
Matches are distributed among these distances:
68 2 0.02
69 122 0.98
70 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (69 bp):
ACATGTTTCACTTAACGGCTAAAATTAACGGTCTGTCACGGCCTGACCCAGTTTGAGTTACGGAA
TAAA
Found at i:237450 original size:28 final size:28
Alignment explanation
Indices: 237380--237461 Score: 103
Period size: 29 Copynumber: 2.9 Consensus size: 28
237370 GTTACGGAAT
* *
237380 AAAACGTTAGGCACCAAACT-ATACCGAA
1 AAAACGTTAGACACCAAACTGA-AACGAA
237408 ATAAACGTTAGACACCAAACTGAAACGAA
1 A-AAACGTTAGACACCAAACTGAAACGAA
* *
237437 AAAACGTTAGACACTAAATTGAAAC
1 AAAACGTTAGACACCAAACTGAAAC
237462 CAAAGGCATA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
28 23 0.48
29 24 0.50
30 1 0.02
ACGTcount: A:0.50, C:0.21, G:0.13, T:0.16
Consensus pattern (28 bp):
AAAACGTTAGACACCAAACTGAAACGAA
Found at i:238274 original size:30 final size:29
Alignment explanation
Indices: 238209--238282 Score: 80
Period size: 30 Copynumber: 2.4 Consensus size: 29
238199 TTTTAAATAG
*
238209 TTATTATATTTATATTAATATATTTATGTAA
1 TTATTAT-TTTTTATTAATATATTTA-GTAA
238240 -TATTATTTTTTATTAAATAATATTTA-TAA
1 TTATTATTTTTTATT-AAT-ATATTTAGTAA
238269 TTATTATTTATTTA
1 TTATTATTT-TTTA
238283 GAATTATTAA
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
29 10 0.26
30 17 0.45
31 11 0.29
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.61
Consensus pattern (29 bp):
TTATTATTTTTTATTAATATATTTAGTAA
Found at i:238444 original size:17 final size:17
Alignment explanation
Indices: 238422--238475 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 17
238412 AATGTTAATA
238422 TTTAAATTTATTTTTAT
1 TTTAAATTTATTTTTAT
* * * *
238439 TTTAAAGTTATGTTGAA
1 TTTAAATTTATTTTTAT
* *
238456 TTTATATTAATTTTTAT
1 TTTAAATTTATTTTTAT
238473 TTT
1 TTT
238476 TTATAATGTA
Statistics
Matches: 27, Mismatches: 10, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.65
Consensus pattern (17 bp):
TTTAAATTTATTTTTAT
Found at i:240067 original size:21 final size:21
Alignment explanation
Indices: 240041--240132 Score: 134
Period size: 21 Copynumber: 4.5 Consensus size: 21
240031 TATGCCATCT
240041 CCGCAGGGTTACATTCCGAGC
1 CCGCAGGGTTACATTCCGAGC
*
240062 CCGCAGGGTTACATTCTGAGC
1 CCGCAGGGTTACATTCCGAGC
*
240083 CCGCAGGGTTACATTCCTAGC
1 CCGCAGGGTTACATTCCGAGC
* *
240104 CC-CA-GGTTACATGCCTAGC
1 CCGCAGGGTTACATTCCGAGC
240123 CCGCAGGGTT
1 CCGCAGGGTT
240133 TTATACCATA
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
19 16 0.25
20 4 0.06
21 45 0.69
ACGTcount: A:0.18, C:0.33, G:0.27, T:0.22
Consensus pattern (21 bp):
CCGCAGGGTTACATTCCGAGC
Found at i:240699 original size:33 final size:34
Alignment explanation
Indices: 240650--240746 Score: 133
Period size: 33 Copynumber: 2.9 Consensus size: 34
240640 AAATGTTTTT
*
240650 AAAATACAAATTATATTATTCGAAAGTTAAAATA
1 AAAATACAAATTATATTATTCGAAATTTAAAATA
* * *
240684 AAAATA-AAATAATATTATTCGAAATTTAAATTT
1 AAAATACAAATTATATTATTCGAAATTTAAAATA
* *
240717 AAAATATAAATTATAGTATTCGAAATTTAA
1 AAAATACAAATTATATTATTCGAAATTTAA
240747 CATTAAATTT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
33 29 0.52
34 27 0.48
ACGTcount: A:0.55, C:0.04, G:0.05, T:0.36
Consensus pattern (34 bp):
AAAATACAAATTATATTATTCGAAATTTAAAATA
Found at i:240753 original size:34 final size:32
Alignment explanation
Indices: 240648--240753 Score: 131
Period size: 34 Copynumber: 3.2 Consensus size: 32
240638 ATAAATGTTT
*
240648 TTAAAATACAAATTATATTATTCGAAAGTTAAAA
1 TTAAAATA-AAATTATATTATTCGAAA-TTTAAA
* *
240682 TAAAAATAAAATAATATTATTCGAAATTTAAA
1 TTAAAATAAAATTATATTATTCGAAATTTAAA
*
240714 TTTAAAATATAAATTATAGTATTCGAAATTTAACA
1 -TTAAAATA-AAATTATATTATTCGAAATTTAA-A
240749 TTAAA
1 TTAAA
240754 TTTCAACTTA
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
32 5 0.08
33 24 0.38
34 33 0.52
35 1 0.02
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.37
Consensus pattern (32 bp):
TTAAAATAAAATTATATTATTCGAAATTTAAA
Found at i:241365 original size:126 final size:128
Alignment explanation
Indices: 241139--241750 Score: 1065
Period size: 126 Copynumber: 4.9 Consensus size: 128
241129 TTACCTGATT
241139 TACTGATATATCTA--GTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAA-ATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
241201 TGACAAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
66 TGACAAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
241264 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATA-T-TC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
*
241327 TGACAAAATAATGGAAGGCGCGCCCTCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
66 TGACAAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
*
241390 TAC-GAGATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
*
241454 TGACAAAA-AATGGAAGGCGCGCCCCCGGGAACGCACCTTCATGTGAATAGTGAAATAATAGG
66 TGACAAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
*
241516 TACTGATATATCTAGTGT-CCCGAGGGACATGAGTGACATTATAGGGCAATGATAAC--ATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
241578 TGACAAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
66 TGACAAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
*
241641 TACTGATATATCTAG-GTCCCCGAGGGACA-GA-TGACATAATAGAGC-ATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
*
241702 TGAC-AAATAATGAAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATA
66 TGACAAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATA
241751 ATACTCCGAT
Statistics
Matches: 467, Mismatches: 10, Indels: 22
0.94 0.02 0.04
Matches are distributed among these distances:
122 8 0.02
123 56 0.12
124 28 0.06
125 148 0.32
126 160 0.34
127 64 0.14
128 3 0.01
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (128 bp):
TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
TGACAAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
Found at i:241654 original size:252 final size:252
Alignment explanation
Indices: 241139--241750 Score: 1078
Period size: 251 Copynumber: 2.4 Consensus size: 252
241129 TTACCTGATT
241139 TACTGATATATCTA-GTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAA-ATATTCTCT
1 TACTGATATATCTAGGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCT
241202 GACAAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTAC
66 GACAAAA-AATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTAC
241267 TGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTGACA
130 TGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTGACA
*
241332 AAATAATGGAAGGCGCGCCCTCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
195 AAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
*
241390 TAC-GAGATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
1 TACTGATATATCTAG-GTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
*
241454 TGACAAAAAATGGAAGGCGCGCCCCCGGGAACGCACCTTCATGTGAATAGTGAAATAATAGGTAC
65 TGACAAAAAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTAC
*
241519 TGATATATCTAGTGT-CCCGAGGGACATGAGTGACATTATAGGGCAATGATAACAT-TCTCTGAC
130 TGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATAT-TCTGAC
241582 AAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
194 AAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
*
241641 TACTGATATATCTAGGTCCCCGAGGGACA-GA-TGACATAATAGAGC-ATGATAACATATTCTCT
1 TACTGATATATCTAGGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCT
* *
241703 GACAAATAATGAAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATA
66 GACAAAAAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATA
241751 ATACTCCGAT
Statistics
Matches: 347, Mismatches: 9, Indels: 13
0.94 0.02 0.04
Matches are distributed among these distances:
248 62 0.18
249 13 0.04
250 12 0.03
251 123 0.35
252 121 0.35
253 16 0.05
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (252 bp):
TACTGATATATCTAGGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCT
GACAAAAAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTACT
GATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTGACAA
AATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
Found at i:241947 original size:208 final size:210
Alignment explanation
Indices: 241648--242067 Score: 762
Period size: 208 Copynumber: 2.0 Consensus size: 210
241638 AGGTACTGAT
241648 ATATCTAGGTCCCCGAGGGACAGATGACATAATAGAGCATGATAACATATTCTCTGACAAATAAT
1 ATATCTAGGTCCCCGAGGGACAGATGACATAATAGAGCATGATAACATATTCTCTGACAAATAAT
241713 GAAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAATACTCCGATTATAGACACTATTATAT
66 GAAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAATACTCCGATTATAGACACTATTATAT
241778 GCAACATATTATAAACTTTC-AAA-AAACTTCAGTTCAC-AGCTTTGAAATTCTC-AATTCCCAA
131 GCAACATATTATAAACTTTCAAAACAAACTTCAGTTCACAAGCTTTGAAATTCTCAAATTCCCAA
241839 ACTCT-AATTCTCAA
196 ACTCTAAATTCTCAA
241853 ATATCTAGTGTCCCCGA-GGACATGATGACATAATAGAGCAATGATAACATATTCTCTGACAAAA
1 ATATCTAG-GTCCCCGAGGGACA-GATGACATAATAGAGC-ATGATAACATATTCTCTGAC-AAA
241917 TAATGAAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAATACTCCGATTATAGACACTATT
62 TAATGAAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAATACTCCGATTATAGACACTATT
241982 ATATGCAACATATTATAAACTTTCAAAACAAACTTCAGTTCACAAGCTTTGAAATTCTCAAATTC
127 ATATGCAACATATTATAAACTTTCAAAACAAACTTCAGTTCACAAGCTTTGAAATTCTCAAATTC
242047 CCAAACTCTAAATTCTCAA
192 CCAAACTCTAAATTCTCAA
242066 AT
1 AT
242068 TCTCTGAAAA
Statistics
Matches: 206, Mismatches: 0, Indels: 10
0.95 0.00 0.05
Matches are distributed among these distances:
205 13 0.06
206 24 0.12
207 20 0.10
208 92 0.45
209 3 0.01
210 14 0.07
211 15 0.07
212 14 0.07
213 11 0.05
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (210 bp):
ATATCTAGGTCCCCGAGGGACAGATGACATAATAGAGCATGATAACATATTCTCTGACAAATAAT
GAAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAATACTCCGATTATAGACACTATTATAT
GCAACATATTATAAACTTTCAAAACAAACTTCAGTTCACAAGCTTTGAAATTCTCAAATTCCCAA
ACTCTAAATTCTCAA
Found at i:242046 original size:8 final size:8
Alignment explanation
Indices: 242033--242071 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
242023 ACAAGCTTTG
242033 AAATTCTC
1 AAATTCTC
*
242041 AAATTCCC
1 AAATTCTC
*
242049 AAACTCT-
1 AAATTCTC
242056 AAATTCTC
1 AAATTCTC
242064 AAATTCTC
1 AAATTCTC
242072 TGAAAATGAG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
7 6 0.23
8 20 0.77
ACGTcount: A:0.38, C:0.28, G:0.00, T:0.33
Consensus pattern (8 bp):
AAATTCTC
Found at i:246683 original size:3 final size:3
Alignment explanation
Indices: 246675--246751 Score: 84
Period size: 3 Copynumber: 25.7 Consensus size: 3
246665 ATGTTATTTA
* * * * * *
246675 TAT TAT TAT TAT TAT TAT AAT TAT AAT TAT TAT AAT TAT AAT AAT AAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
246723 TAT TAT TAT TAT TAT TAT ATAT TA- TAT TA
1 TAT TAT TAT TAT TAT TAT -TAT TAT TAT TA
246752 ATTTACAAGC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
2 2 0.03
3 59 0.92
4 3 0.05
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:246703 original size:21 final size:21
Alignment explanation
Indices: 246679--246751 Score: 103
Period size: 21 Copynumber: 3.5 Consensus size: 21
246669 TATTTATATT
246679 ATTATTATTATTATAATTATA
1 ATTATTATTATTATAATTATA
* *
246700 ATTATTATAATTATAATAATA
1 ATTATTATTATTATAATTATA
*
246721 ATTATTATTATTATTATTATA
1 ATTATTATTATTATAATTATA
246742 TATTA-TATTA
1 -ATTATTATTA
246752 ATTTACAAGC
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
21 42 0.91
22 4 0.09
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
ATTATTATTATTATAATTATA
Found at i:247237 original size:11 final size:11
Alignment explanation
Indices: 247216--247247 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
247206 AAAGAAACAG
247216 AAAAGAA-AAA
1 AAAAGAAGAAA
247226 AAAAGAAGAAA
1 AAAAGAAGAAA
247237 AAAAGAAGAAA
1 AAAAGAAGAAA
247248 GCTTACCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.33
11 14 0.67
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (11 bp):
AAAAGAAGAAA
Found at i:249158 original size:9 final size:9
Alignment explanation
Indices: 249144--249168 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
249134 TTACATGTAA
249144 ATTTAAATT
1 ATTTAAATT
249153 ATTTAAATT
1 ATTTAAATT
249162 ATTTAAA
1 ATTTAAA
249169 AGCATGTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (9 bp):
ATTTAAATT
Found at i:259183 original size:15 final size:15
Alignment explanation
Indices: 259163--259219 Score: 80
Period size: 15 Copynumber: 3.7 Consensus size: 15
259153 ATTATGCTTG
*
259163 AAGAAAAAAAAGAGA
1 AAGAAAAAAAAAAGA
259178 AAGAAAAAAAAAAGAA
1 AAGAAAAAAAAAAG-A
259194 AAGAAAAAAAAAAG-
1 AAGAAAAAAAAAAGA
259208 AAGAAAGAAAAA
1 AAGAAA-AAAAA
259220 GGGGGGTCAA
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
14 6 0.15
15 18 0.46
16 15 0.38
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (15 bp):
AAGAAAAAAAAAAGA
Found at i:259184 original size:11 final size:11
Alignment explanation
Indices: 259164--259218 Score: 56
Period size: 11 Copynumber: 4.9 Consensus size: 11
259154 TTATGCTTGA
*
259164 AGAAAAAAAAG
1 AGAAAGAAAAG
*
259175 AGAAAGAAAAA
1 AGAAAGAAAAG
*
259186 AAAAAGAAAAG
1 AGAAAGAAAAG
* *
259197 AAAAAAAAAAG
1 AGAAAGAAAAG
259208 AAGAAAGAAAA
1 -AGAAAGAAAA
259219 AGGGGGGTCA
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
11 28 0.78
12 8 0.22
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (11 bp):
AGAAAGAAAAG
Found at i:259187 original size:16 final size:16
Alignment explanation
Indices: 259166--259219 Score: 74
Period size: 17 Copynumber: 3.2 Consensus size: 16
259156 ATGCTTGAAG
259166 AAAAAAAAGAGAAAGA
1 AAAAAAAAGAGAAAGA
259182 AAAAAAAA-AGAAAAGAA
1 AAAAAAAAGAG-AAAG-A
259199 AAAAAAAAGAAGAAAGA
1 AAAAAAAAG-AGAAAGA
259216 AAAA
1 AAAA
259220 GGGGGGTCAA
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
15 2 0.06
16 12 0.35
17 14 0.41
18 4 0.12
19 2 0.06
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (16 bp):
AAAAAAAAGAGAAAGA
Found at i:259785 original size:83 final size:83
Alignment explanation
Indices: 259688--259846 Score: 266
Period size: 83 Copynumber: 1.9 Consensus size: 83
259678 CAAAGTAAAC
* * *
259688 CAATCATTGAATTTGGAAGAGGAATGTGCTC-ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATC
1 CAATCATTGAATTTGAAAGAGAAATGTGC-CAATAGCATCTTCTGGAAATGTTCTTTGAGTTATC
259752 TGATCTGGTTTGGTAAAAT
65 TGATCTGGTTTGGTAAAAT
*
259771 CAATCATTGAATTTGAAAGATAAATGTGCCAATAGCATCTTCTGGAAATGTTCTTTGAGTTATCT
1 CAATCATTGAATTTGAAAGAGAAATGTGCCAATAGCATCTTCTGGAAATGTTCTTTGAGTTATCT
259836 GATCTGGTTTG
66 GATCTGGTTTG
259847 ATATGAAACC
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
82 1 0.01
83 70 0.99
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.38
Consensus pattern (83 bp):
CAATCATTGAATTTGAAAGAGAAATGTGCCAATAGCATCTTCTGGAAATGTTCTTTGAGTTATCT
GATCTGGTTTGGTAAAAT
Found at i:260002 original size:115 final size:115
Alignment explanation
Indices: 259800--260213 Score: 751
Period size: 115 Copynumber: 3.6 Consensus size: 115
259790 ATAAATGTGC
*
259800 CAATAGCATCTTCTGGAAATGTTCTTTGAGTTATCTGATCTGGTTTGATATGAAACCACAGAACC
1 CAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGATATGAAACCACAGAACC
259865 AATCATCAAATTTGAAAGATGAATTTGCTCATAGTAGAAATAAAGAGACT
66 AATCATCAAATTTGAAAGATGAATTTGCTCATAGTAGAAATAAAGAGACT
* *
259915 CAATAGCATCTTCTGGAAGTGTTCTTTGAATTACCTGATCTGGTTTGATATGAAACCACAGAACC
1 CAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGATATGAAACCACAGAACC
259980 AATCATCAAATTTGAAAGATGAATTTGCTCATAGTAGAAATAAAGAGACT
66 AATCATCAAATTTGAAAGATGAATTTGCTCATAGTAGAAATAAAGAGACT
*
260030 CAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAAACCACAGAACC
1 CAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGATATGAAACCACAGAACC
260095 AATCATCAAATTTGAAAGATGAATTTGCTCATAGTAGAAATAAAGAGACT
66 AATCATCAAATTTGAAAGATGAATTTGCTCATAGTAGAAATAAAGAGACT
* *
260145 CAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGA-A-GGAACTACAGAAC
1 CAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTT-GATATGAAACCACAGAAC
260208 CAATCA
65 CAATCA
260214 CTGGAATTAA
Statistics
Matches: 289, Mismatches: 9, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
114 17 0.06
115 271 0.94
116 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (115 bp):
CAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGATATGAAACCACAGAACC
AATCATCAAATTTGAAAGATGAATTTGCTCATAGTAGAAATAAAGAGACT
Found at i:261675 original size:20 final size:20
Alignment explanation
Indices: 261614--261676 Score: 51
Period size: 20 Copynumber: 3.1 Consensus size: 20
261604 TAGCTTTTCC
261614 AGAAGAAGTTCATAATGAGA
1 AGAAGAAGTTCATAATGAGA
** *
261634 AGAACTCA-TT--TAAAGAAGGA
1 AGAA-GAAGTTCATAATG-A-GA
261654 AGAAGAAGTTCATAATGAGA
1 AGAAGAAGTTCATAATGAGA
261674 AGA
1 AGA
261677 GCTTATTCAA
Statistics
Matches: 31, Mismatches: 6, Indels: 12
0.63 0.12 0.24
Matches are distributed among these distances:
18 4 0.13
19 2 0.06
20 19 0.61
21 2 0.06
22 4 0.13
ACGTcount: A:0.51, C:0.06, G:0.24, T:0.19
Consensus pattern (20 bp):
AGAAGAAGTTCATAATGAGA
Found at i:261707 original size:113 final size:113
Alignment explanation
Indices: 260928--261693 Score: 1090
Period size: 113 Copynumber: 6.8 Consensus size: 113
260918 TGGATCAACA
260928 TTTCCAG-AGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAG
1 TTTCCAGAAG-AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAG
* * ** * ***
260992 AAGAATTTGTTTAACCTTTTGTTTGAATTCATCA-TGTGATGGATTAAAA
65 AAGAATTTGTTCAACCTTTTGCTCAAATCCATCACT-TGATGGATTAGCT
* * * * *
261041 TTTCCAGGTAG-AGTTCATAATGAGAAGAATTCATTACTTGAAGGAGGAAGAATAAATTCATAAT
1 TTTCCA-GAAGAAGTTCATAATGAGAAGAACTCA-T-C-TGAAGAAGGAAGAAGAAGTTCATAAT
* *
261105 GAGAAGAATTTGTTCAACCTTATGCTCAAATCCATCACTTGATGGATCAGCT
62 GAGAAGAATTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGGATTAGCT
* *
261157 TTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATAAGA
1 TTTCCAGAAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
* *
261222 AGAATTTGTTCAACCTTATGCTCAAATCCATCACTTGATGGATCAGCT
66 AGAATTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGGATTAGCT
* *
261270 TTTCCAGAAGAAGTTCATAATAAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATAAGA
1 TTTCCAGAAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
* *
261335 AGAATTTGTTCAACCTTTTGCTCAAATCCATCACTAGATGGATTATCT
66 AGAATTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGGATTAGCT
****
261383 TTTCCAGTTCTAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
1 TTTCCAGAAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
* *
261448 AGAATTTGTTCAACCTTTTGCTCAAATTCATCACTTGATGGATTATCT
66 AGAATTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGGATTAGCT
**
261496 TTTCCAGTTCG-AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAG
1 TTTCCAG-AAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAG
* * *
261560 AAGAATTTGTTCAGCTTTTTGCTCAAATCCATCACTTAATGGATTAGCT
65 AAGAATTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGGATTAGCT
* *
261609 TTTCCAGAAGAAGTTCATAATGAGAAGAACTCATTTAAAGAAGGAAGAAGAAGTTCATAATGAGA
1 TTTCCAGAAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
** *
261674 AGAGCTTATTCAACCTTTTG
66 AGAATTTGTTCAACCTTTTG
261694 AATGACTCTA
Statistics
Matches: 595, Mismatches: 49, Indels: 18
0.90 0.07 0.03
Matches are distributed among these distances:
112 1 0.00
113 493 0.83
114 4 0.01
115 7 0.01
116 89 0.15
117 1 0.00
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.30
Consensus pattern (113 bp):
TTTCCAGAAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
AGAATTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGGATTAGCT
Found at i:261930 original size:3 final size:3
Alignment explanation
Indices: 261922--261998 Score: 82
Period size: 3 Copynumber: 25.3 Consensus size: 3
261912 ATGTTATTTA
* * * * *
261922 TAT TAT TAT TAT TAT TAT AAT TAT TAT TAT TAT AAT TAT AAT AAT AAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
261970 AAT TAT TAT TAT TAT TAA TAT ATAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT -TAT TAT T
261999 TAATATTACA
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
3 62 0.95
4 3 0.05
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:262495 original size:13 final size:13
Alignment explanation
Indices: 262477--262506 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
262467 AGAAACAGAA
262477 AAGAAAAAAAAAG
1 AAGAAAAAAAAAG
*
262490 AAGAAAAAGAAAG
1 AAGAAAAAAAAAG
262503 AAGA
1 AAGA
262507 GAAGCTTACC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (13 bp):
AAGAAAAAAAAAG
Found at i:264735 original size:25 final size:24
Alignment explanation
Indices: 264704--264761 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 24
264694 TAAACTTCTT
264704 GAAAATAAAAAAAACAAAAGAAAATA
1 GAAAATAAAAAAAA-AAAAGAAAA-A
* *
264730 -AAAATACAATATAAAAAAGAAAAA
1 GAAAATA-AAAAAAAAAAAGAAAAA
264754 GAAAATAA
1 GAAAATAA
264762 TGAATACCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
24 2 0.07
25 21 0.75
26 5 0.18
ACGTcount: A:0.79, C:0.03, G:0.07, T:0.10
Consensus pattern (24 bp):
GAAAATAAAAAAAAAAAAGAAAAA
Found at i:271317 original size:46 final size:46
Alignment explanation
Indices: 271255--271348 Score: 188
Period size: 46 Copynumber: 2.0 Consensus size: 46
271245 AAACATTTCA
271255 AATTCAATAGCCTCTACATATCATAAAATCAAGAATTTTGAAAATT
1 AATTCAATAGCCTCTACATATCATAAAATCAAGAATTTTGAAAATT
271301 AATTCAATAGCCTCTACATATCATAAAATCAAGAATTTTGAAAATT
1 AATTCAATAGCCTCTACATATCATAAAATCAAGAATTTTGAAAATT
271347 AA
1 AA
271349 CTGCCTTTTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.47, C:0.15, G:0.06, T:0.32
Consensus pattern (46 bp):
AATTCAATAGCCTCTACATATCATAAAATCAAGAATTTTGAAAATT
Found at i:276120 original size:17 final size:18
Alignment explanation
Indices: 276100--276155 Score: 62
Period size: 17 Copynumber: 3.1 Consensus size: 18
276090 ATAATAAATT
*
276100 AATTTAAATAAAGT-TAA
1 AATTTAAATAAAATATAA
*
276117 AATTT-AATAAAATATTA
1 AATTTAAATAAAATATAA
276134 AATTTATAATAAAATATTAA
1 AATTTA-AATAAAATA-TAA
276154 AA
1 AA
276156 AATCTACTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
16 7 0.22
17 12 0.38
19 9 0.28
20 4 0.12
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (18 bp):
AATTTAAATAAAATATAA
Found at i:279929 original size:19 final size:20
Alignment explanation
Indices: 279905--279943 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
279895 AAAAGCTTCG
*
279905 AGTTCAATGAAGAT-AAAAT
1 AGTTCAAAGAAGATGAAAAT
279924 AGTTCAAAGAAGATGAAAAT
1 AGTTCAAAGAAGATGAAAAT
279944 GGATGAGAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.54, C:0.05, G:0.18, T:0.23
Consensus pattern (20 bp):
AGTTCAAAGAAGATGAAAAT
Found at i:280195 original size:20 final size:19
Alignment explanation
Indices: 280170--280208 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
280160 AGAAAAAGAG
280170 AAACTAAAT-TAAATATATAA
1 AAACT-AATGTAAATA-ATAA
280190 AAACTAATGTAAATAATAA
1 AAACTAATGTAAATAATAA
280209 TACCATTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.64, C:0.05, G:0.03, T:0.28
Consensus pattern (19 bp):
AAACTAATGTAAATAATAA
Found at i:285591 original size:3 final size:3
Alignment explanation
Indices: 285583--285616 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
285573 AGAAAGAAAC
285583 TAA TAA TAA TAA TTAA TAA T-A TAA TAA TAA TAA T
1 TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA T
285617 TAAGGTGCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 24 0.83
4 3 0.10
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:293337 original size:26 final size:26
Alignment explanation
Indices: 293303--293364 Score: 115
Period size: 26 Copynumber: 2.4 Consensus size: 26
293293 ATGATCAATG
*
293303 ATCACATCTTTGAAACAAATTCATCA
1 ATCAAATCTTTGAAACAAATTCATCA
293329 ATCAAATCTTTGAAACAAATTCATCA
1 ATCAAATCTTTGAAACAAATTCATCA
293355 ATCAAATCTT
1 ATCAAATCTT
293365 CATAAACAAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.44, C:0.21, G:0.03, T:0.32
Consensus pattern (26 bp):
ATCAAATCTTTGAAACAAATTCATCA
Found at i:295389 original size:21 final size:21
Alignment explanation
Indices: 295365--295409 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
295355 CGGTGTTGAC
*
295365 GTGGTAATCCACTGTGCTGAT
1 GTGGTAATCCACAGTGCTGAT
295386 GTGGTAATCCACAGTGCTGAT
1 GTGGTAATCCACAGTGCTGAT
295407 GTG
1 GTG
295410 ACAGTTCATC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.20, C:0.18, G:0.31, T:0.31
Consensus pattern (21 bp):
GTGGTAATCCACAGTGCTGAT
Found at i:297123 original size:23 final size:22
Alignment explanation
Indices: 297088--297130 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
297078 TGTTTTCTAC
297088 TTTCGAAATGGAAAAGTAATAGT
1 TTTCGAAATGGAAAA-TAATAGT
297111 TTTCG-AATAGGAAAATAATA
1 TTTCGAAAT-GGAAAATAATA
297131 CCTTTTGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.47, C:0.05, G:0.19, T:0.30
Consensus pattern (22 bp):
TTTCGAAATGGAAAATAATAGT
Found at i:297136 original size:23 final size:23
Alignment explanation
Indices: 297088--297140 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 23
297078 TGTTTTCTAC
*
297088 TTTCGAAATGGAAAAGTAATAGT
1 TTTCGAAATGGAAAAGTAATACT
297111 TTTCG-AATAGGAAAA-TAATACCT
1 TTTCGAAAT-GGAAAAGTAATA-CT
297134 TTT-GAAA
1 TTTCGAAA
297141 ACTTGAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
22 9 0.35
23 17 0.65
ACGTcount: A:0.43, C:0.08, G:0.17, T:0.32
Consensus pattern (23 bp):
TTTCGAAATGGAAAAGTAATACT
Found at i:298096 original size:82 final size:82
Alignment explanation
Indices: 297959--298276 Score: 289
Period size: 83 Copynumber: 3.9 Consensus size: 82
297949 ATAAACCCGC
* * * * * * * * *
297959 AATAGTGTTAATATATAGTGGTGTTTGATTATACAAACGCCGTAACAGAAAGTAATTTTACGGAG
1 AATAGGGTTATTATATAGTGGCGTTTTATCAAACAAACGCCGCAAGAGAAAGTAATTTTACGGCG
**
298024 TTTTTTATGAATGCCGT
66 TTTTTTACAAATGCCGT
* * * **
298041 AATAGGGTTACTATATAGTGGCATTTTTTCAAACAAACGCCGCAAGAGAAAGTAATTTTGTGGCG
1 AATAGGGTTATTATATAGTGGCGTTTTATCAAACAAACGCCGCAAGAGAAAGTAATTTTACGGCG
* * *
298106 TTTTTTAACAAACGACGC
66 TTTTTT-ACAAATGCCGT
* * * * * *
298124 AATAGAGTTATTATTTTGTGGCGTTTTATCAAACAAGCACCGC-AGAAGAAAGTAATTTAACGGC
1 AATAGGGTTATTATATAGTGGCGTTTTATCAAACAAACGCCGCAAG-AGAAAGTAATTTTACGGC
298188 GTTTTTATACAAATGCCGT
65 GTTTTT-TACAAATGCCGT
* * * * ** * *
298207 AATATGTTTATTATATAATGGTGTTTTATCTTACAAATGCCGCAAAAGAAAGTAA-TTTAGCGGC
1 AATAGGGTTATTATATAGTGGCGTTTTATCAAACAAACGCCGCAAGAGAAAGTAATTTTA-CGGC
298271 GTTTTT
65 GTTTTT
298277 AAACAAACAC
Statistics
Matches: 185, Mismatches: 46, Indels: 9
0.77 0.19 0.04
Matches are distributed among these distances:
82 63 0.34
83 120 0.65
84 2 0.01
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.35
Consensus pattern (82 bp):
AATAGGGTTATTATATAGTGGCGTTTTATCAAACAAACGCCGCAAGAGAAAGTAATTTTACGGCG
TTTTTTACAAATGCCGT
Found at i:298125 original size:40 final size:41
Alignment explanation
Indices: 298058--298159 Score: 102
Period size: 40 Copynumber: 2.4 Consensus size: 41
298048 TTACTATATA
* *
298058 GTGGCATTTTTTCAAACAAACGCCGCAAGAGAAAG-TA-ATTTT
1 GTGGCGTTTTTT-AAACAAACGACGCAAGAG--AGTTATATTTT
*
298100 GTGGCGTTTTTT-AACAAACGACGCAATAGAGTTATTATTTT
1 GTGGCGTTTTTTAAACAAACGACGCAAGAGAGTTA-TATTTT
*
298141 GTGGCGTTTTATCAAACAA
1 GTGGCGTTTT-TTAAACAA
298160 GCACCGCAGA
Statistics
Matches: 51, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
38 2 0.04
39 2 0.04
40 15 0.29
41 15 0.29
42 12 0.24
43 5 0.10
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33
Consensus pattern (41 bp):
GTGGCGTTTTTTAAACAAACGACGCAAGAGAGTTATATTTT
Found at i:298312 original size:83 final size:81
Alignment explanation
Indices: 298064--298316 Score: 215
Period size: 83 Copynumber: 3.0 Consensus size: 81
298054 TATAGTGGCA
* * * * * *
298064 TTTTTTCAAACAAACGCCGCAAGAGAAAGTAATTTTGTGGCGTTTTTTAACAAACGA-CGCAATA
1 TTTTATCAAACAAACGCCGCAAAAGAAAGTAATTTAGCGGCGTTTTTAAACAAAC-ACCGTAATA
* *
298128 GAGTTATT-ATTTTGTGGCG
65 -A--TATTAATTTAGTGGTG
* * * * * **
298147 TTTTATCAAACAAGCACCGCAGAAGAAAGTAATTTAACGGCGTTTTTATACAAATGCCGTAAT-A
1 TTTTATCAAACAAACGCCGCAAAAGAAAGTAATTTAGCGGCGTTTTTAAACAAACACCGTAATAA
* * *
298211 TGTTTATTATATAATGGTG
66 T-ATTA--ATTTAGTGGTG
** *
298230 TTTTATCTTACAAATGCCGCAAAAGAAAGTAATTTAGCGGCGTTTTTAAACAAACACCGTAATAA
1 TTTTATCAAACAAACGCCGCAAAAGAAAGTAATTTAGCGGCGTTTTTAAACAAACACCGTAATAA
298295 TCATGTAATTTAGTGGTG
66 T-AT-TAATTTAGTGGTG
298313 TTTT
1 TTTT
298317 GCCATATTTG
Statistics
Matches: 131, Mismatches: 32, Indels: 14
0.74 0.18 0.08
Matches are distributed among these distances:
79 1 0.01
80 2 0.02
81 1 0.01
83 122 0.93
84 3 0.02
85 2 0.02
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (81 bp):
TTTTATCAAACAAACGCCGCAAAAGAAAGTAATTTAGCGGCGTTTTTAAACAAACACCGTAATAA
TATTAATTTAGTGGTG
Found at i:301096 original size:16 final size:17
Alignment explanation
Indices: 301075--301112 Score: 60
Period size: 16 Copynumber: 2.2 Consensus size: 17
301065 TATTTGACTT
301075 ATCCTGCTCC-CTCACC
1 ATCCTGCTCCTCTCACC
301091 ATCCTGCTCCTTCTCACC
1 ATCCTGCTCC-TCTCACC
301109 ATCC
1 ATCC
301113 AACTTTTAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 10 0.50
18 10 0.50
ACGTcount: A:0.13, C:0.53, G:0.05, T:0.29
Consensus pattern (17 bp):
ATCCTGCTCCTCTCACC
Found at i:306473 original size:43 final size:42
Alignment explanation
Indices: 306414--306547 Score: 148
Period size: 43 Copynumber: 3.2 Consensus size: 42
306404 TTAACATTTA
*
306414 GCGGCG-TTGTATCCTAAAACGGCGCTATATACCAGACCTATT
1 GCGGCGTTTGTATCCTAAAACGCCGCTATATACCA-ACCTATT
* * *
306456 GCGGCGTTTGTATCCTAAACCGCCGC--TATACCATCCTATA
1 GCGGCGTTTGTATCCTAAAACGCCGCTATATACCAACCTATT
* * * *
306496 GCAGCATTTGTACCCTGAAAACGCCGCTAAATACCATACCTATT
1 GCGGCGTTTGTATCCT-AAAACGCCGCTATATACCA-ACCTATT
306540 GCGGCGTT
1 GCGGCGTT
306548 GCATAAAAAT
Statistics
Matches: 74, Mismatches: 13, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
40 18 0.24
41 16 0.22
42 6 0.08
43 23 0.31
44 11 0.15
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.26
Consensus pattern (42 bp):
GCGGCGTTTGTATCCTAAAACGCCGCTATATACCAACCTATT
Found at i:306917 original size:47 final size:47
Alignment explanation
Indices: 306865--306955 Score: 157
Period size: 48 Copynumber: 1.9 Consensus size: 47
306855 AAAAAGTATA
*
306865 ATAAA-TTAAATATATGTTTTAGTAAAACTATAACAAATTTTGAGATT
1 ATAAATTTAAATATATGTTTTAATAAAAC-ATAACAAATTTTGAGATT
306912 ATAAATTTAAATATATGTTTTAATAAAACATAACAAATTTTGAG
1 ATAAATTTAAATATATGTTTTAATAAAACATAACAAATTTTGAG
306956 TATAATTCAC
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
47 20 0.48
48 22 0.52
ACGTcount: A:0.48, C:0.04, G:0.08, T:0.40
Consensus pattern (47 bp):
ATAAATTTAAATATATGTTTTAATAAAACATAACAAATTTTGAGATT
Done.