Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008738.1 Hibiscus syriacus cultivar Beakdansim tig00111813_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90215

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
133--755
55
11.8
55
86
6
810
35
11
19
33
1.88
133--755
108
5.9
110
84
7
810
35
11
19
33
1.88
960--1224
67
4.0
67
84
10
348
32
15
22
29
1.95
960--1224
132
2.0
131
86
7
376
32
15
22
29
1.95
1255--1379
44
2.8
44
82
7
162
45
9
23
21
1.81
1939--2105
83
2.0
84
96
3
311
37
8
20
33
1.83
2451--2494
7
6.4
7
84
5
54
47
31
0
20
1.50
7054--7092
16
2.4
16
100
0
78
38
33
7
20
1.81
13885--13930
24
2.0
23
86
4
65
32
2
4
60
1.28
14831--14885
19
2.9
19
94
5
94
43
0
7
49
1.30
18171--18235
26
2.5
25
78
7
76
64
3
0
32
1.09
19904--19968
30
2.2
30
88
0
94
38
20
12
29
1.89
20847--20908
31
2.0
31
84
6
81
33
19
20
25
1.96
21851--21888
20
1.9
20
94
0
67
23
18
21
36
1.95
27481--27727
124
2.0
124
95
1
451
28
14
19
36
1.92
28655--28680
5
5.2
5
100
0
52
38
0
0
61
0.96
48088--48163
36
2.1
36
95
0
134
32
10
13
43
1.78
49992--50024
15
2.1
16
88
5
50
18
6
9
66
1.40
51482--51540
31
1.9
31
92
0
100
52
10
8
28
1.64
58417--58459
5
8.4
5
82
12
52
0
16
2
81
0.79
58409--58459
15
3.4
15
86
8
68
0
19
1
78
0.85
58409--58451
19
2.2
20
91
4
70
0
20
0
79
0.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58927--59003
3
25.3
3
86
2
91
58
0
0
41
0.98
59250--59305
17
3.2
17
68
26
53
17
25
8
48
1.76
59250--59789
113
4.8
113
91
1
811
29
20
14
36
1.91
60273--60666
167
2.3
167
92
2
630
36
23
12
27
1.91
60273--60666
83
4.7
84
92
3
625
36
23
12
27
1.91
61802--61860
24
2.5
23
84
10
75
1
13
0
84
0.69
71979--72003
9
2.8
9
100
0
50
52
0
0
48
1.00
74136--74185
14
3.4
14
86
5
64
0
20
2
78
0.86
74144--74185
5
8.4
5
84
10
59
0
16
2
80
0.81
74653--74716
3
21.0
3
90
3
56
54
0
0
45
0.99
75909--75955
14
3.4
14
80
16
53
42
14
0
42
1.46
78154--78286
51
2.6
51
81
7
137
21
31
27
20
1.98
78426--78454
14
2.1
14
93
6
51
27
6
0
65
1.18
78529--78749
110
2.0
111
92
2
374
36
7
9
45
1.66
83542--83633
46
2.0
45
95
2
166
28
16
28
27
1.97
86357--86388
15
2.1
15
100
0
64
34
12
40
12
1.81
86766--86815
20
2.5
20
83
0
64
28
34
12
26
1.92
86807--86894
20
4.3
20
66
2
59
34
23
15
26
1.95
86900--87111
20
10.4
20
79
12
191
37
22
17
22
1.94
86872--87021
78
1.9
80
90
2
241
40
22
15
22
1.91
87004--87076
26
3.0
26
84
15
104
34
21
19
24
1.96
87004--87096
46
2.0
46
97
0
177
34
21
19
24
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
86984--87111
66
1.9
66
91
0
211
36
21
18
22
1.95
89210--89255
20
2.3
20
85
7
58
17
17
30
34
1.93
89672--89721
21
2.4
21
74
12
57
26
36
18
20
1.95

Tables:   1

The End!