genome.fa.s8740.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008740.1 Hibiscus syriacus cultivar Beakdansim tig00111827_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  261820

Tables:   1   

This is table  1  of  1  ( 117 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6976--7029	21	2.6	21	94	2	92	25	16	29	27	1.97
13055--13127	32	2.3	32	75	0	74	38	13	12	35	1.83
13187--13239	20	2.7	20	84	0	61	49	15	9	26	1.74
14590--14620	15	2.1	15	100	0	62	38	12	12	35	1.82
18752--18790	17	2.3	17	90	0	60	41	12	10	35	1.77
18762--18896	32	4.3	31	72	11	87	37	9	15	37	1.80
18848--18896	15	3.1	15	80	11	53	32	10	18	38	1.84
24903--24950	22	2.0	24	81	18	57	20	8	2	68	1.26
34735--34873	69	2.0	69	95	0	251	28	28	15	27	1.96
37260--37301	21	2.1	21	82	8	52	47	0	2	50	1.14
39117--39182	3	21.3	3	84	6	87	59	1	0	39	1.07
39122--39187	21	3.1	21	95	2	114	59	0	0	40	0.98
39315--39980	45	14.8	45	91	0	1001	35	18	23	22	1.96
40580--40659	22	3.6	22	75	18	85	37	13	15	33	1.86
41028--41177	54	2.9	54	79	7	145	30	22	13	34	1.92
41089--41177	46	1.9	46	88	0	133	28	24	12	34	1.92
44800--44861	32	1.9	32	86	0	88	20	16	16	46	1.83
45318--45391	8	8.9	8	72	12	60	2	16	1	79	0.91
45318--45391	17	4.4	16	75	11	60	2	16	1	79	0.91
45321--45393	25	2.9	25	87	4	94	2	16	1	79	0.92
45344--45382	19	2.2	19	86	9	55	0	17	0	82	0.68
51448--51494	2	23.5	2	91	0	76	48	2	0	48	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52613--52667	21	2.6	21	97	0	101	23	27	30	18	1.97
52968--53035	3	22.0	3	82	5	82	60	0	0	39	0.97
52968--53035	18	3.7	18	88	4	91	60	0	0	39	0.97
52965--53041	18	4.3	18	76	17	81	58	0	0	41	0.98
63197--63227	16	1.9	16	100	0	62	12	12	19	54	1.70
65482--65515	17	2.1	16	88	5	50	14	8	0	76	1.01
76113--76148	17	2.1	17	89	0	54	38	11	0	50	1.38
76631--76665	3	11.7	3	100	0	70	31	0	0	68	0.90
85859--85915	29	2.0	29	83	10	73	63	19	1	15	1.40
86751--86825	21	3.1	24	81	12	75	53	0	5	41	1.24
87189--87232	19	2.3	19	96	0	79	72	0	4	22	1.02
87850--87965	21	5.6	21	68	7	58	33	25	18	23	1.96
87971--88189	40	5.4	40	80	8	196	37	24	17	20	1.93
87994--88184	20	9.4	20	75	4	186	38	24	17	19	1.93
87994--88184	40	4.7	40	92	1	283	38	24	17	19	1.93
88746--88858	21	5.6	21	87	6	139	50	18	19	11	1.77
88746--88874	21	6.5	19	86	4	123	50	20	18	10	1.76
88828--88874	19	2.5	19	92	0	76	48	25	17	8	1.74
88875--88963	20	4.8	20	73	18	77	12	22	19	46	1.83
90986--91052	21	3.2	21	66	6	55	23	35	20	19	1.95
92401--92436	14	2.6	14	90	0	54	30	0	22	47	1.52
92538--92590	19	2.7	19	91	2	88	45	20	22	11	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92592--92630	19	2.1	18	95	4	69	15	17	15	51	1.77
92636--92685	20	2.5	20	93	0	82	22	20	22	36	1.96
92904--92949	19	2.4	19	96	0	83	52	13	17	17	1.75
92954--93087	33	3.8	33	77	11	133	14	20	18	46	1.84
92948--93054	19	5.8	19	77	12	116	15	18	16	48	1.81
92948--93087	72	1.9	72	85	5	194	15	20	18	46	1.84
93059--93113	20	2.8	20	88	0	74	23	21	21	32	1.98
95511--95564	24	2.2	24	93	0	90	40	20	18	20	1.91
96418--96678	20	12.9	19	72	13	157	19	17	24	37	1.94
96424--96716	40	7.2	40	81	8	299	18	17	24	38	1.93
96424--96716	121	2.4	122	84	6	389	18	17	24	38	1.93
96424--96655	41	5.7	41	88	2	337	18	18	25	37	1.93
96664--96716	20	2.7	20	88	5	72	13	16	24	45	1.83
96424--96716	81	3.6	81	82	6	299	18	17	24	38	1.93
97277--97309	2	17.0	2	93	6	59	48	0	0	51	1.00
97823--97860	17	2.2	17	86	9	51	23	5	5	65	1.34
98936--99072	68	2.0	68	92	0	229	21	16	9	53	1.70
106460--106490	2	15.5	2	93	0	53	48	3	0	48	1.17
106702--106744	15	2.9	15	79	10	52	60	0	0	39	0.97
110863--110915	27	2.0	27	85	7	72	24	11	18	45	1.82
115950--115976	14	1.9	14	100	0	54	37	22	22	18	1.95
115979--116046	15	4.7	14	70	5	55	25	20	25	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121856--121895	21	1.9	21	89	0	62	50	0	7	42	1.30
125705--125764	20	2.8	21	90	7	86	21	33	23	21	1.97
127335--127363	12	2.4	12	100	0	58	34	31	34	0	1.58
128025--128049	13	1.9	13	100	0	50	40	8	4	48	1.51
129287--129319	2	16.5	2	100	0	66	48	0	0	51	1.00
140964--140997	17	2.0	16	88	11	50	64	11	2	20	1.39
143888--143936	19	2.6	19	100	0	98	22	34	20	22	1.97
145060--145277	117	1.9	117	82	5	280	49	8	14	27	1.73
149136--149198	23	2.9	22	76	6	58	26	19	14	39	1.90
149807--149837	15	2.0	16	93	6	55	48	0	0	51	1.00
163419--163466	21	2.3	21	96	3	89	33	29	16	20	1.95
166718--166764	24	1.9	25	83	12	62	57	4	12	25	1.54
176577--176625	24	2.0	24	96	0	89	32	18	20	28	1.96
176886--176952	34	1.9	34	82	14	84	23	11	16	47	1.80
178361--178407	24	2.0	24	91	0	76	8	17	21	53	1.70
178877--178908	10	3.3	10	95	4	57	0	6	0	93	0.34
178874--178908	14	2.5	14	90	9	54	0	8	0	91	0.42
184305--184363	27	2.1	28	84	12	77	59	0	0	40	0.97
184434--184504	28	2.6	28	77	6	74	56	2	7	33	1.41
185774--185828	3	18.7	3	85	10	78	65	0	1	32	1.03
185970--186255	120	2.4	120	87	4	384	24	17	15	42	1.88
186177--186690	113	4.6	110	86	6	677	28	19	14	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
186638--186726	17	5.1	17	68	24	60	20	20	10	49	1.77
186638--186729	36	2.6	36	91	5	152	19	20	9	50	1.76
186525--186839	143	2.1	149	86	6	437	25	19	12	42	1.87
186670--186874	113	1.8	109	93	4	356	26	18	14	40	1.89
187665--188047	93	4.1	93	94	1	662	34	20	15	28	1.93
189042--189138	46	2.1	46	86	3	133	3	16	0	80	0.84
189041--189146	28	3.9	26	73	18	90	2	16	0	80	0.84
189052--189149	8	11.5	8	73	16	72	3	16	0	80	0.83
196488--196519	15	2.1	15	94	0	55	46	6	18	28	1.73
199165--199338	88	2.0	82	81	9	197	40	10	9	39	1.72
199942--199973	15	2.1	15	100	0	64	18	34	34	12	1.89
200816--200859	3	14.7	3	86	9	63	63	0	4	31	1.14
217510--217547	20	1.9	20	88	0	58	39	13	15	31	1.86
218336--218371	17	2.1	18	89	5	56	55	5	2	36	1.38
221291--222043	106	7.0	106	90	1	1076	22	17	23	35	1.95
222341--222367	14	1.9	14	100	0	54	22	18	22	37	1.95
222983--223095	58	1.9	58	85	3	156	13	22	12	52	1.73
240488--240682	106	1.8	106	86	2	284	27	10	13	48	1.75
241119--241175	24	2.3	23	80	11	60	36	0	10	52	1.36
246275--246308	17	2.0	17	88	0	50	70	8	0	20	1.13
246994--247111	24	4.7	24	68	20	80	58	13	0	27	1.41
246912--247120	76	2.8	76	91	2	325	57	12	0	28	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
249192--249238	5	9.6	5	76	4	51	72	0	4	23	1.02
255535--255745	74	2.8	74	92	2	325	58	13	0	27	1.40
255621--255742	25	5.0	24	69	16	79	60	13	0	25	1.38
256738--256777	14	2.9	14	85	7	55	50	0	2	47	1.14
259596--259662	20	3.7	16	72	25	53	67	1	10	20	1.29
259620--259664	20	2.3	20	85	11	58	66	2	11	20	1.33
261779--261815	18	2.1	18	90	5	58	8	5	5	81	0.99

Tables:   1

The End!