Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008741.1 Hibiscus syriacus cultivar Beakdansim tig00111828_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100617

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15812--15926
36
3.2
36
71
18
112
38
19
17
25
1.93
15788--15929
72
2.0
72
88
0
212
38
17
19
24
1.92
17396--17502
24
4.5
24
74
0
106
48
17
14
19
1.81
17398--17502
48
2.2
48
78
0
120
48
18
14
19
1.81
19222--19246
9
2.8
9
100
0
50
80
8
0
12
0.92
19782--19821
12
3.6
11
87
9
55
65
5
5
25
1.34
19840--19887
15
3.2
16
78
21
59
70
0
0
29
0.87
20493--20594
37
2.8
37
86
0
132
32
13
12
41
1.83
21328--22407
106
10.4
106
89
3
1523
23
19
24
33
1.97
22333--22481
74
2.0
74
94
0
262
18
21
25
34
1.96
22227--22586
180
2.0
180
92
0
594
21
19
24
33
1.97
22407--23188
106
7.4
106
92
0
1251
22
18
24
34
1.96
24014--24069
22
2.5
22
91
0
94
26
12
23
37
1.90
24671--24730
13
4.4
14
78
14
63
0
16
5
78
0.92
24672--24731
8
7.5
8
73
12
52
0
15
5
80
0.88
24672--24738
16
4.3
15
73
17
64
1
13
4
80
0.93
29338--29387
18
2.8
18
84
6
57
80
2
4
14
0.95
29334--29448
23
5.1
23
68
17
62
69
1
4
24
1.16
29676--29718
2
21.5
2
100
0
86
51
0
0
48
1.00
29934--29974
11
3.6
11
87
6
55
65
4
4
24
1.32
29993--30040
15
3.2
16
78
21
59
70
0
0
29
0.87
29993--30040
22
2.1
22
81
11
53
70
0
0
29
0.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30642--30743
37
2.8
37
87
0
132
31
13
14
40
1.85
34099--34205
24
4.5
24
75
0
106
46
17
15
19
1.84
34101--34207
48
2.2
48
79
0
124
46
17
16
18
1.84
34634--34669
17
2.1
17
100
0
72
16
27
5
50
1.68
35900--35954
27
2.1
27
86
6
78
30
10
12
45
1.77
43272--43309
19
2.0
19
100
0
76
31
0
15
52
1.43
43691--43841
71
2.2
67
90
4
230
29
9
11
50
1.69
44114--44278
61
2.7
60
87
5
233
31
15
17
35
1.92
45640--45683
21
2.0
22
82
4
54
43
0
11
45
1.40
54814--55431
256
2.4
248
83
12
744
27
12
19
40
1.87
57327--57479
70
2.2
70
92
0
252
33
30
22
14
1.93
58438--58497
22
2.8
21
80
14
61
25
20
20
35
1.96
58792--58842
23
2.3
22
90
6
84
66
3
1
27
1.20
59055--59079
4
6.2
4
100
0
50
72
0
0
28
0.86
59330--59375
2
23.0
2
100
0
92
50
0
0
50
1.00
59382--59423
16
2.5
17
88
7
59
52
2
0
45
1.13
61349--61381
2
16.5
2
100
0
66
48
0
0
51
1.00
72606--72649
3
14.7
3
85
0
52
0
56
0
43
0.99
77969--78014
22
2.1
22
95
0
83
47
6
17
28
1.72
79542--79597
3
18.3
3
82
10
69
64
1
0
33
1.04
79787--80257
55
8.8
55
80
6
398
28
24
14
32
1.94
92833--92868
2
18.0
2
88
0
54
44
0
5
50
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92927--92972
22
2.1
22
95
0
83
47
6
17
28
1.72
94483--94535
3
17.3
3
81
11
63
64
1
0
33
1.05
95655--95724
21
3.1
21
75
15
68
75
0
7
17
1.01
98394--98943
108
5.1
109
87
1
777
24
16
23
35
1.95
98394--98949
218
2.6
217
85
3
773
25
16
23
35
1.95

Tables:   1

The End!