Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008742.1 Hibiscus syriacus cultivar Beakdansim tig00111831_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77456

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2625--2654
12
2.5
12
100
0
60
43
0
6
50
1.28
2713--2758
22
2.1
22
95
0
83
47
6
17
28
1.72
4270--4319
3
16.3
3
80
12
57
64
2
0
34
1.05
8208--8772
110
5.1
110
88
0
842
24
16
22
36
1.94
14294--14326
13
2.5
13
95
0
57
9
9
42
39
1.68
15358--15395
2
19.0
2
100
0
76
50
0
0
50
1.00
17478--17508
13
2.3
14
94
5
55
29
12
3
54
1.53
22270--22310
21
1.9
22
90
5
66
39
17
17
26
1.91
22340--22383
20
2.2
20
83
0
52
38
34
9
18
1.82
27602--27657
21
2.7
21
80
5
60
30
16
1
51
1.54
27619--27662
21
2.1
21
83
8
54
34
18
0
47
1.49
29525--29683
64
2.5
62
82
9
176
27
18
18
35
1.94
36575--36775
76
2.7
75
88
1
278
19
23
31
24
1.98
37089--37160
30
2.3
30
95
4
126
37
18
2
41
1.65
39353--39392
21
1.9
21
89
0
62
10
25
40
25
1.86
43244--43283
21
1.9
21
85
10
55
35
10
2
52
1.48
45202--45400
76
2.6
77
88
2
278
19
23
33
24
1.97
46196--46229
18
1.9
17
88
5
50
29
0
5
64
1.17
48711--48765
2
27.5
2
96
0
101
50
1
0
47
1.11
49347--49375
2
15.0
2
92
7
51
51
0
0
48
1.00
49347--49382
8
4.3
9
89
10
51
50
0
0
50
1.00
49991--50023
16
2.0
17
88
5
50
75
3
0
21
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50460--50511
23
2.2
24
83
6
63
57
3
3
34
1.35
52404--52453
20
2.6
20
81
6
59
58
14
12
16
1.64
52794--52892
45
2.2
45
98
0
189
22
7
14
56
1.62
53775--53814
20
2.1
19
86
9
55
50
0
2
47
1.14
53886--53944
31
1.9
31
89
0
91
64
13
3
18
1.42
54499--54592
2
47.0
2
100
0
188
50
0
0
50
1.00
65088--65213
31
4.0
31
79
7
121
34
22
16
26
1.95
65590--65630
19
2.2
18
86
4
55
51
24
2
21
1.60
67139--67210
28
2.5
29
80
8
85
51
20
2
25
1.61
73044--73133
46
1.9
47
93
2
155
27
11
23
37
1.89

Tables:   1

The End!