Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008747.1 Hibiscus syriacus cultivar Beakdansim tig00111837_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12616935
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 27 of 51
Found at i:7237002 original size:27 final size:26
Alignment explanation
Indices: 7236944--7237003 Score: 120
Period size: 26 Copynumber: 2.3 Consensus size: 26
7236934 GACAATTTCG
7236944 TGAAAAAATCTTTGAGTCGTTTCTTT
1 TGAAAAAATCTTTGAGTCGTTTCTTT
7236970 TGAAAAAATCTTTGAGTCGTTTCTTT
1 TGAAAAAATCTTTGAGTCGTTTCTTT
7236996 TGAAAAAA
1 TGAAAAAA
7237004 AAAATTTGTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (26 bp):
TGAAAAAATCTTTGAGTCGTTTCTTT
Found at i:7237081 original size:66 final size:64
Alignment explanation
Indices: 7236963--7237116 Score: 186
Period size: 66 Copynumber: 2.4 Consensus size: 64
7236953 CTTTGAGTCG
* * *
7236963 TTTCTTTTG-AAAAAATCTTTGAGTCGTTTCTTTTGAAAAAAAAAATTTGTCTCTCTTGAGAGAA
1 TTTCTTTTGAAAAAAATCTTTGAGCCGTTTCTCTT-AAAAAAAAAATTTGTCTCTCTTGAGACAA
* **
7237027 TTTCTTTTGAGAAAAAAATCTTTGAGCCTGTTTCTCTT-AAAACAATTTTTGTCTCTCTTGAGAC
1 TTTCTTTT--GAAAAAAATCTTTGAGCC-GTTTCTCTTAAAAAAAAAATTTGTCTCTCTTGAGAC
*
7237091 AG
63 AA
*
7237093 TTTCTTTTGAAATAAATCTTTGAG
1 TTTCTTTTGAAAAAAATCTTTGAG
7237117 TATGTTCTTT
Statistics
Matches: 78, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
64 23 0.29
66 32 0.41
67 15 0.19
68 8 0.10
ACGTcount: A:0.30, C:0.13, G:0.14, T:0.44
Consensus pattern (64 bp):
TTTCTTTTGAAAAAAATCTTTGAGCCGTTTCTCTTAAAAAAAAAATTTGTCTCTCTTGAGACAA
Found at i:7239903 original size:31 final size:31
Alignment explanation
Indices: 7239868--7239931 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
7239858 ACAGAGGGAT
* * * *
7239868 TAAAATTAAATGAATCGATAATGTTAGAGAC
1 TAAAATTAAACGAATCAATAATATTAGAAAC
*
7239899 TAAAATTGAACGAATCAATAATATTAGAAAC
1 TAAAATTAAACGAATCAATAATATTAGAAAC
7239930 TA
1 TA
7239932 TTTATCTTTA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.52, C:0.08, G:0.12, T:0.28
Consensus pattern (31 bp):
TAAAATTAAACGAATCAATAATATTAGAAAC
Found at i:7241648 original size:51 final size:51
Alignment explanation
Indices: 7241572--7241676 Score: 210
Period size: 51 Copynumber: 2.1 Consensus size: 51
7241562 ACCAAAACTA
7241572 GACATTGTTTTTTCTATTAATTTTCTGCTATTGAGTGTCGATTTCCAAGAT
1 GACATTGTTTTTTCTATTAATTTTCTGCTATTGAGTGTCGATTTCCAAGAT
7241623 GACATTGTTTTTTCTATTAATTTTCTGCTATTGAGTGTCGATTTCCAAGAT
1 GACATTGTTTTTTCTATTAATTTTCTGCTATTGAGTGTCGATTTCCAAGAT
7241674 GAC
1 GAC
7241677 CAAGTAGATC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.22, C:0.14, G:0.16, T:0.48
Consensus pattern (51 bp):
GACATTGTTTTTTCTATTAATTTTCTGCTATTGAGTGTCGATTTCCAAGAT
Found at i:7243844 original size:24 final size:24
Alignment explanation
Indices: 7243817--7243886 Score: 63
Period size: 23 Copynumber: 3.0 Consensus size: 24
7243807 ACTAAGCTTA
7243817 ATTTTAAATAATATAATAAATTTC
1 ATTTTAAATAATATAATAAATTTC
* * *
7243841 ATTTT-TATTATATTAATATA-TTC
1 ATTTTAAATAATA-TAATAAATTTC
* * *
7243864 ATTTTAAATGATTTTATAAATTT
1 ATTTTAAATAATATAATAAATTT
7243887 AACCTTCAAT
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
23 18 0.51
24 17 0.49
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.54
Consensus pattern (24 bp):
ATTTTAAATAATATAATAAATTTC
Found at i:7249987 original size:71 final size:71
Alignment explanation
Indices: 7249871--7250013 Score: 286
Period size: 71 Copynumber: 2.0 Consensus size: 71
7249861 CGGGTAGATA
7249871 TCATGATTGGGTAAGTGTTGTATTTATCTTTAGATAGTATCTTTTAATTCTATTGATTATCTTAC
1 TCATGATTGGGTAAGTGTTGTATTTATCTTTAGATAGTATCTTTTAATTCTATTGATTATCTTAC
7249936 TTGTAC
66 TTGTAC
7249942 TCATGATTGGGTAAGTGTTGTATTTATCTTTAGATAGTATCTTTTAATTCTATTGATTATCTTAC
1 TCATGATTGGGTAAGTGTTGTATTTATCTTTAGATAGTATCTTTTAATTCTATTGATTATCTTAC
7250007 TTGTAC
66 TTGTAC
7250013 T
1 T
7250014 AACTTATTTC
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 72 1.00
ACGTcount: A:0.24, C:0.10, G:0.15, T:0.51
Consensus pattern (71 bp):
TCATGATTGGGTAAGTGTTGTATTTATCTTTAGATAGTATCTTTTAATTCTATTGATTATCTTAC
TTGTAC
Found at i:7253381 original size:29 final size:29
Alignment explanation
Indices: 7253342--7253457 Score: 99
Period size: 29 Copynumber: 3.8 Consensus size: 29
7253332 TTTGTCTCTC
* *
7253342 TTGAGACCGTTTCTCTTGAAACATCATCT
1 TTGAGATCGTTTCCCTTGAAACATCATCT
**
7253371 TTGAGATCGTTTCCCTTGAAACGAGTTTTGTCT
1 TTGAGATCGTTTCCCTTGAAAC-A---TCATCT
*
7253404 CCCTTGAGA-CAGTTTCTCTTGAAACATCATCT
1 ---TTGAGATC-GTTTCCCTTGAAACATCATCT
*
7253436 TTGAGATCATTTCCCTTGAAAC
1 TTGAGATCGTTTCCCTTGAAAC
7253458 GAATTTTGTC
Statistics
Matches: 69, Mismatches: 9, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
29 38 0.55
30 2 0.03
32 4 0.06
33 4 0.06
35 2 0.03
36 19 0.28
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (29 bp):
TTGAGATCGTTTCCCTTGAAACATCATCT
Found at i:7253410 original size:65 final size:65
Alignment explanation
Indices: 7253301--7253623 Score: 414
Period size: 65 Copynumber: 5.0 Consensus size: 65
7253291 AATTGATGAA
* * * *
7253301 ATCTTTGAG-TCTGTTTCTCTTCAAACAAAGTTTTGTCTCTCTTGAGACCGTTTCTCTTGAAACA
1 ATCTTTGAGATC-GTTTCCCTTGAAACGAA-TTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACA
7253365 TC
64 TC
* *
7253367 ATCTTTGAGATCGTTTCCCTTGAAACGAGTTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATC
1 ATCTTTGAGATCGTTTCCCTTGAAACGAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACATC
* * * *
7253432 ATCTTTGAGATCATTTCCCTTGAAACGAATTTTGTCTCCCTTGACACAATTTCTCTTGAAACATC
1 ATCTTTGAGATCGTTTCCCTTGAAACGAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACATC
* * * **
7253497 ATCTTTGAGATCGTTTCCCTTTAAATGAATTTTGTCTCTCTTAAGGTAGTTTCTCTTGAAACATC
1 ATCTTTGAGATCGTTTCCCTTGAAACGAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACATC
* * * * * * **
7253562 ATCTTTGAGTTTGTTTCCCTCGAAACAAATTTTTTCTCTGTTGAGATGGTTTCTCTTGAAAC
1 ATCTTTGAGATCGTTTCCCTTGAAACGAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAAC
7253624 CATTATCCCT
Statistics
Matches: 226, Mismatches: 30, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
65 202 0.89
66 22 0.10
67 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.14, T:0.42
Consensus pattern (65 bp):
ATCTTTGAGATCGTTTCCCTTGAAACGAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACATC
Found at i:7253419 original size:36 final size:36
Alignment explanation
Indices: 7253371--7253493 Score: 104
Period size: 36 Copynumber: 3.6 Consensus size: 36
7253361 AACATCATCT
7253371 TTGAGATC-GTTTCCCTTGAAACGAGTTTTGTCTCCC
1 TTGAGATCAGTTTCCCTTGAAACGA-TTTTGTCTCCC
* **
7253407 TTGAGA-CAGTTTCTCTTGAAAC-A--TCATCT---
1 TTGAGATCAGTTTCCCTTGAAACGATTTTGTCTCCC
7253436 TTGAGATCA-TTTCCCTTGAAACGAATTTTGTCTCCC
1 TTGAGATCAGTTTCCCTTGAAACG-ATTTTGTCTCCC
* * *
7253472 TTGACA-CAATTTCTCTTGAAAC
1 TTGAGATCAGTTTCCCTTGAAAC
7253494 ATCATCTTTG
Statistics
Matches: 69, Mismatches: 8, Indels: 20
0.71 0.08 0.21
Matches are distributed among these distances:
29 18 0.26
30 2 0.03
31 1 0.01
32 4 0.06
33 4 0.06
35 4 0.06
36 36 0.52
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.38
Consensus pattern (36 bp):
TTGAGATCAGTTTCCCTTGAAACGATTTTGTCTCCC
Found at i:7253712 original size:40 final size:40
Alignment explanation
Indices: 7253650--7253753 Score: 154
Period size: 40 Copynumber: 2.6 Consensus size: 40
7253640 GGTCTGTCAG
* * *
7253650 CCTCATTACGTAGGAACTGTGTCATCCACCGACAAGATCT
1 CCTCATCACGTAGGAGCCGTGTCATCCACCGACAAGATCT
**
7253690 CCTCATCACGTAGGAGCCGTGTCATCCATTGACAAGATCT
1 CCTCATCACGTAGGAGCCGTGTCATCCACCGACAAGATCT
*
7253730 CCTCATCACGTAGGAGACGTGTCA
1 CCTCATCACGTAGGAGCCGTGTCA
7253754 CCCTTAGATA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 58 1.00
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (40 bp):
CCTCATCACGTAGGAGCCGTGTCATCCACCGACAAGATCT
Found at i:7253876 original size:131 final size:134
Alignment explanation
Indices: 7253689--7254027 Score: 400
Period size: 131 Copynumber: 2.5 Consensus size: 134
7253679 CGACAAGATC
* * ** * *
7253689 TCCTCATCACGTAGGAGCCGTGTCATCCATTGACAAGATCTCCTCATCACGTAGGAGACGTGTCA
1 TCCTCATCACGTAGGAACAGTGTCATCCACCGACCAGATCTCCTCATCACGTAGGAGTCGTGTCA
* * *
7253754 CCCTTAGATAACCAACCCTCCTCATCACGTAGGAA-T-CGTGT-T-ATCATCCCTAAATATGGAC
66 CCCTTAGATAACCAACCCTCCTCATCACATAGGAACTATGT-TATCATCATCCCTAAAGATGG-C
* *
7253815 TACCA-
129 CAACAG
* * * **
7253820 TCTTCATCACGTAGGAACGGTGTCATCCACCGACCAGATCTCCTCATCACGTAGGAGTTGCATCA
1 TCCTCATCACGTAGGAACAGTGTCATCCACCGACCAGATCTCCTCATCACGTAGGAGTCGTGTCA
* ** *
7253885 ACCTTAGATAACCAGTCGTCCTCATCACATAGGAACTATGTTATCATCATCCCTAAAGATGGCCA
66 CCCTTAGATAACCAACCCTCCTCATCACATAGGAACTATGTTATCATCATCCCTAAAGATGGCCA
*
7253950 AGATG
131 ACA-G
* * *
7253955 TCCTCATCACGTAGGAACAGTGTCATCCCCCGACCAGATCTCCTCATAACGTAGGAGTCATGTCA
1 TCCTCATCACGTAGGAACAGTGTCATCCACCGACCAGATCTCCTCATCACGTAGGAGTCGTGTCA
7254020 CCCTTAGA
66 CCCTTAGA
7254028 CGACCAGAAC
Statistics
Matches: 173, Mismatches: 29, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
131 85 0.49
132 2 0.01
133 6 0.03
134 16 0.09
135 64 0.37
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (134 bp):
TCCTCATCACGTAGGAACAGTGTCATCCACCGACCAGATCTCCTCATCACGTAGGAGTCGTGTCA
CCCTTAGATAACCAACCCTCCTCATCACATAGGAACTATGTTATCATCATCCCTAAAGATGGCCA
ACAG
Found at i:7254221 original size:3 final size:3
Alignment explanation
Indices: 7254213--7254240 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
7254203 GAGTTCTACA
7254213 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
7254241 TTTACAGGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:7255917 original size:2 final size:2
Alignment explanation
Indices: 7255910--7255937 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7255900 TTGTATATTC
7255910 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7255938 TATTATTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7256708 original size:23 final size:23
Alignment explanation
Indices: 7256682--7256726 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
7256672 AATTCAAATT
7256682 AATACAAAATCATCAATT-TTTTG
1 AATACAAAATCAT-AATTATTTTG
* *
7256705 AATATAAATTCATAATTATTTT
1 AATACAAAATCATAATTATTTT
7256727 TTAAAATAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.44, C:0.09, G:0.02, T:0.44
Consensus pattern (23 bp):
AATACAAAATCATAATTATTTTG
Found at i:7256735 original size:24 final size:22
Alignment explanation
Indices: 7256697--7256760 Score: 67
Period size: 23 Copynumber: 2.7 Consensus size: 22
7256687 AAAATCATCA
*
7256697 ATTTTTTGAATATAAATTCATAATT
1 ATTTTTT-AAAATAAATT--TAATT
7256722 ATTTTTTAAAATAATATTTAATT
1 ATTTTTTAAAATAA-ATTTAATT
7256745 ATTTTTCTAAAA-AAAT
1 ATTTTT-TAAAATAAAT
7256761 GGTTATGACA
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
22 2 0.06
23 13 0.36
24 11 0.31
25 10 0.28
ACGTcount: A:0.44, C:0.03, G:0.02, T:0.52
Consensus pattern (22 bp):
ATTTTTTAAAATAAATTTAATT
Found at i:7263042 original size:2 final size:2
Alignment explanation
Indices: 7263037--7263068 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7263027 ACATATATGC
7263037 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7263069 CATCAACATC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7263286 original size:23 final size:23
Alignment explanation
Indices: 7263254--7263309 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
7263244 CACCAAAGTG
* * *
7263254 CCACATAGAAATTTCCTGAAGGA
1 CCACGTAGAAATGTCCCGAAGGA
*
7263277 CCGCGTAGAAATGTCCCGAAGGA
1 CCACGTAGAAATGTCCCGAAGGA
7263300 CCACGTAGAA
1 CCACGTAGAA
7263310 TTATCCCAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.36, C:0.25, G:0.23, T:0.16
Consensus pattern (23 bp):
CCACGTAGAAATGTCCCGAAGGA
Found at i:7263316 original size:23 final size:22
Alignment explanation
Indices: 7263254--7263316 Score: 63
Period size: 23 Copynumber: 2.7 Consensus size: 22
7263244 CACCAAAGTG
* *
7263254 CCACATAGAAATTTCCTGAAGGA
1 CCACGTAG-AATTTCCCGAAGGA
* *
7263277 CCGCGTAGAAATGTCCCGAAGGA
1 CCACGTAG-AATTTCCCGAAGGA
7263300 CCACGTAGAATTATCCC
1 CCACGTAGAATT-TCCC
7263317 AAAAGACCGA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
22 3 0.09
23 30 0.91
ACGTcount: A:0.33, C:0.27, G:0.21, T:0.19
Consensus pattern (22 bp):
CCACGTAGAATTTCCCGAAGGA
Found at i:7263324 original size:23 final size:23
Alignment explanation
Indices: 7263275--7263332 Score: 55
Period size: 23 Copynumber: 2.5 Consensus size: 23
7263265 TTTCCTGAAG
* * * *
7263275 GACCGCGTAGAAATGTCCCGAAG
1 GACCACGTAGAAATATCCCAAAA
*
7263298 GACCACGTAGAATTATCCCAAAA
1 GACCACGTAGAAATATCCCAAAA
7263321 GACCGA-GTAGAA
1 GACC-ACGTAGAA
7263333 CCCTCGACTC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
23 28 0.97
24 1 0.03
ACGTcount: A:0.38, C:0.24, G:0.24, T:0.14
Consensus pattern (23 bp):
GACCACGTAGAAATATCCCAAAA
Found at i:7263546 original size:45 final size:45
Alignment explanation
Indices: 7263471--7263575 Score: 113
Period size: 45 Copynumber: 2.3 Consensus size: 45
7263461 GGATCCTTAT
* * *
7263471 CACATAGCTTATATCACATGTTCATATAATCGCTTGGGTCAATAA
1 CACATAGCTTATATCACATGTTCATATAATCACATAGGTCAATAA
* * * * *
7263516 CATATAGCTTATATCATAT-TCTTATGTAATCACATAGGTCAATAT
1 CACATAGCTTATATCACATGT-TCATATAATCACATAGGTCAATAA
*
7263561 CACATATCTTATATC
1 CACATAGCTTATATC
7263576 TTTTTCTCAT
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
44 1 0.02
45 48 0.98
ACGTcount: A:0.34, C:0.19, G:0.10, T:0.37
Consensus pattern (45 bp):
CACATAGCTTATATCACATGTTCATATAATCACATAGGTCAATAA
Found at i:7267916 original size:23 final size:23
Alignment explanation
Indices: 7267878--7267957 Score: 81
Period size: 23 Copynumber: 3.5 Consensus size: 23
7267868 AAATGACACA
* *
7267878 TAGAAATGT-CTCGAAGTACCGCG
1 TAGAAATGTCCT-GAAGGACCACG
*
7267901 TAGAAATGTCCTGAAGGACTACG
1 TAGAAATGTCCTGAAGGACCACG
* * *
7267924 TAGAATTGTCCTGGAGGACTACG
1 TAGAAATGTCCTGAAGGACCACG
*
7267947 TAGAATTGTCC
1 TAGAAATGTCC
7267958 CAAAGGACTA
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
23 49 0.96
24 2 0.04
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (23 bp):
TAGAAATGTCCTGAAGGACCACG
Found at i:7267964 original size:23 final size:23
Alignment explanation
Indices: 7267899--7267967 Score: 102
Period size: 23 Copynumber: 3.0 Consensus size: 23
7267889 CGAAGTACCG
*
7267899 CGTAGAAATGTCCTGAAGGACTA
1 CGTAGAATTGTCCTGAAGGACTA
*
7267922 CGTAGAATTGTCCTGGAGGACTA
1 CGTAGAATTGTCCTGAAGGACTA
**
7267945 CGTAGAATTGTCCCAAAGGACTA
1 CGTAGAATTGTCCTGAAGGACTA
7267968 TGTAAAACTC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (23 bp):
CGTAGAATTGTCCTGAAGGACTA
Found at i:7269470 original size:54 final size:53
Alignment explanation
Indices: 7269406--7269637 Score: 247
Period size: 54 Copynumber: 4.3 Consensus size: 53
7269396 CGTTAAGATG
* ** *
7269406 CACACGTAGTGCCTATACGGTCATTCATAAACATATTG-TGAATTATGTGGTTCA
1 CACACATAGTGCCTATACGGTTGTTCATCAACATA-TGATGAATTATGTGGTT-A
7269460 CACACATAGTGCCTATACGGTTGTTCATCAACATATGATGAATT-TCGTGGGTTA
1 CACACATAGTGCCTATACGGTTGTTCATCAACATATGATGAATTAT-GT-GGTTA
* *
7269514 CACA-ATTAGTGCCTATACAGTTGTTCATCAACATATGATGAATTATGTGGATTG
1 CACACA-TAGTGCCTATACGGTTGTTCATCAACATATGATGAATTATGTGG-TTA
* * * ** * *
7269568 TACACTTAGTTCCTACGCGGTTGTTAATCAACATATGATGAATCTATG-GGTTG
1 CACACATAGTGCCTATACGGTTGTTCATCAACATATGATGAAT-TATGTGGTTA
*
7269621 CACACTTAGTGCCTATA
1 CACACATAGTGCCTATA
7269638 GTATATATAG
Statistics
Matches: 153, Mismatches: 17, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
53 22 0.14
54 122 0.80
55 9 0.06
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (53 bp):
CACACATAGTGCCTATACGGTTGTTCATCAACATATGATGAATTATGTGGTTA
Found at i:7269601 original size:108 final size:107
Alignment explanation
Indices: 7269412--7269637 Score: 276
Period size: 108 Copynumber: 2.1 Consensus size: 107
7269402 GATGCACACG
* *
7269412 TAGTGCCTATACGGTCATTCATAAACATATTGTGAATTATGTGGTTCACACACATAGTGCCTATA
1 TAGTGCCTATACAGTCATTCATAAACATATTGTGAATTATGTGGTTCACACACATAGTGCCTACA
* * *
7269477 CGGTTGTTCATCAACATATGATGAATTTCGTGGGTTACACAAT
66 CGGTTGTTAATCAACATATGATGAATCT-ATGGGTTACACAAT
** * ** * *
7269520 TAGTGCCTATACAGTTGTTCATCAACATA-TGATGAATTATGTGGATT-GTACACTTAGTTCCTA
1 TAGTGCCTATACAGTCATTCATAAACATATTG-TGAATTATGTGG-TTCACACACATAGTGCCTA
* * *
7269583 CGCGGTTGTTAATCAACATATGATGAATCTATGGGTTGCACACT
64 CACGGTTGTTAATCAACATATGATGAATCTATGGGTTACACAAT
7269627 TAGTGCCTATA
1 TAGTGCCTATA
7269638 GTATATATAG
Statistics
Matches: 101, Mismatches: 15, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
107 24 0.24
108 75 0.74
109 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (107 bp):
TAGTGCCTATACAGTCATTCATAAACATATTGTGAATTATGTGGTTCACACACATAGTGCCTACA
CGGTTGTTAATCAACATATGATGAATCTATGGGTTACACAAT
Found at i:7274351 original size:20 final size:21
Alignment explanation
Indices: 7274326--7274377 Score: 65
Period size: 20 Copynumber: 2.5 Consensus size: 21
7274316 TTATCTCAAG
7274326 TAAAAC-TATCATATG-ATATT
1 TAAAACATAT-ATATGTATATT
7274346 TAAAACATATATATGTATA-T
1 TAAAACATATATATGTATATT
7274366 TAAATACATATA
1 TAAA-ACATATA
7274378 CTCAAAATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
20 16 0.55
21 13 0.45
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (21 bp):
TAAAACATATATATGTATATT
Found at i:7274976 original size:59 final size:59
Alignment explanation
Indices: 7274876--7275003 Score: 139
Period size: 59 Copynumber: 2.2 Consensus size: 59
7274866 GTAGTGTTAA
* * * * ** *
7274876 CCCGAGTATGACACATAAGGTTGTGTCCACCATCTGTACTAAGTATCCTTAAGTACAAT
1 CCCGAATATGACACATAAGATTGTGCCCACCATATACACTAAGTATACTTAAGTACAAT
* * * **
7274935 CCCGAATATGACACATAAGATTGTGCCCACTATATACACTAATTATACTTTAGTGTAAT
1 CCCGAATATGACACATAAGATTGTGCCCACCATATACACTAAGTATACTTAAGTACAAT
*
7274994 CCCAAATATG
1 CCCGAATATG
7275004 TAGCCTGCTG
Statistics
Matches: 56, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
59 56 1.00
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.30
Consensus pattern (59 bp):
CCCGAATATGACACATAAGATTGTGCCCACCATATACACTAAGTATACTTAAGTACAAT
Found at i:7279345 original size:54 final size:54
Alignment explanation
Indices: 7279276--7279418 Score: 232
Period size: 54 Copynumber: 2.6 Consensus size: 54
7279266 TTAGTACCTA
*
7279276 GATGAATTCCATGGGTTGCACACTTAGTGCCTATACGGTTGTTCATCAACATAT
1 GATGAATTCCGTGGGTTGCACACTTAGTGCCTATACGGTTGTTCATCAACATAT
* * * *
7279330 GATGAATTCTGTGGGTTGCACACTTAGTACCTATACTGTTGTTCATCAGCATAT
1 GATGAATTCCGTGGGTTGCACACTTAGTGCCTATACGGTTGTTCATCAACATAT
*
7279384 GATGAATTCCGTGAGTTGCACACTTAGTGCCTATA
1 GATGAATTCCGTGGGTTGCACACTTAGTGCCTATA
7279419 GTACATATAG
Statistics
Matches: 81, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 81 1.00
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (54 bp):
GATGAATTCCGTGGGTTGCACACTTAGTGCCTATACGGTTGTTCATCAACATAT
Found at i:7279411 original size:141 final size:141
Alignment explanation
Indices: 7279151--7279416 Score: 349
Period size: 141 Copynumber: 1.9 Consensus size: 141
7279141 TTCATTGAGA
*
7279151 TGCACACGTAGTGCCTATACGGTCATTCATAAACATATTATAAATTTCGTGATTCGCACACATAG
1 TGCACACGTAGTGCCTATACGGTCATTCATAAACATATGATAAATTTCGTGATTCGCACACATAG
* ** *
7279216 TGCCTATACGGTTGTTCATCAGCATATGATGAATTTCTTTGGTTGTACAATTAGTACCTAGATGA
66 TACCTATACGGTTGTTCATCAGCATATGATGAATTTCCGTGGTTGCACAATTAGTACCTAGATGA
7279281 ATTCCATGGGT
131 ATTCCATGGGT
* ** * * * *
7279292 TGCACACTTAGTGCCTATACGGTTGTTCATCAACATATGATGAA-TTCTGTGGGTT-GCACACTT
1 TGCACACGTAGTGCCTATACGGTCATTCATAAACATATGATAAATTTC-GT-GATTCGCACACAT
* * *
7279355 AGTACCTATACTGTTGTTCATCAGCATATGATGAA-TTCCGTGAGTTGCACACTTAGTGCCTA
64 AGTACCTATACGGTTGTTCATCAGCATATGATGAATTTCCGTG-GTTGCACAATTAGTACCTA
7279417 TAGTACATAT
Statistics
Matches: 107, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
140 8 0.07
141 96 0.90
142 3 0.03
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.35
Consensus pattern (141 bp):
TGCACACGTAGTGCCTATACGGTCATTCATAAACATATGATAAATTTCGTGATTCGCACACATAG
TACCTATACGGTTGTTCATCAGCATATGATGAATTTCCGTGGTTGCACAATTAGTACCTAGATGA
ATTCCATGGGT
Found at i:7283299 original size:54 final size:54
Alignment explanation
Indices: 7283212--7283354 Score: 214
Period size: 54 Copynumber: 2.6 Consensus size: 54
7283202 TTAGTACCTA
*
7283212 GATGAATTCCATGGGTTGCACACTTAGTGCCTATACAACTGTTCATCAACATAT
1 GATGAATTCTATGGGTTGCACACTTAGTGCCTATACAACTGTTCATCAACATAT
* * ****
7283266 GATGAATTCTGTGGGTTGCACACTTAGTACCTATATTGTTGTTCATCAACATAT
1 GATGAATTCTATGGGTTGCACACTTAGTGCCTATACAACTGTTCATCAACATAT
*
7283320 GATGAATTTTATGGGTTGCACACTTAGTGCCTATA
1 GATGAATTCTATGGGTTGCACACTTAGTGCCTATA
7283355 GTACATATAG
Statistics
Matches: 79, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 79 1.00
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (54 bp):
GATGAATTCTATGGGTTGCACACTTAGTGCCTATACAACTGTTCATCAACATAT
Found at i:7283347 original size:141 final size:141
Alignment explanation
Indices: 7283087--7283352 Score: 351
Period size: 141 Copynumber: 1.9 Consensus size: 141
7283077 TTCATTGAGA
*
7283087 TGCACACGTAGTGCCTATACAATCATTCATAAACATATTATGAATTTCGTGATTCGCACACATAG
1 TGCACACGTAGTGCCTATACAATCATTCATAAACATATGATGAATTTCGTGATTCGCACACATAG
* * *
7283152 TGCCTATACGGTTGTTCATCAACATATGATGAATTTCTTTGGTTGTACAATTAGTACCTAGATGA
66 TACCTATACGGTTGTTCATCAACATATGATGAATTTCTTGGGTTGCACAATTAGTACCTAGATGA
7283217 ATTCCATGGGT
131 ATTCCATGGGT
* * * * *
7283228 TGCACACTTAGTGCCTATACAA-CTGTTCATCAACATATGATGAA-TTCTGTGGGTT-GCACACT
1 TGCACACGTAGTGCCTATACAATC-ATTCATAAACATATGATGAATTTC-GT-GATTCGCACACA
** * *
7283290 TAGTACCTATATTGTTGTTCATCAACATATGATGAATTT-TATGGGTTGCACACTTAGTGCCTA
63 TAGTACCTATACGGTTGTTCATCAACATATGATGAATTTCT-TGGGTTGCACAATTAGTACCTA
7283353 TAGTACATAT
Statistics
Matches: 108, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
140 5 0.05
141 100 0.93
142 3 0.03
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (141 bp):
TGCACACGTAGTGCCTATACAATCATTCATAAACATATGATGAATTTCGTGATTCGCACACATAG
TACCTATACGGTTGTTCATCAACATATGATGAATTTCTTGGGTTGCACAATTAGTACCTAGATGA
ATTCCATGGGT
Found at i:7283751 original size:19 final size:19
Alignment explanation
Indices: 7283727--7283775 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
7283717 CTATACTATG
7283727 GTATCGATACCCTCTTTCA
1 GTATCGATACCCTCTTTCA
7283746 GTATCGATACCCTCTTTCA
1 GTATCGATACCCTCTTTCA
*
7283765 GTATCGTTACC
1 GTATCGATACC
7283776 ATTTTGACAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.20, C:0.31, G:0.12, T:0.37
Consensus pattern (19 bp):
GTATCGATACCCTCTTTCA
Found at i:7288028 original size:2 final size:2
Alignment explanation
Indices: 7288023--7288064 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
7288013 ACATATATGC
7288023 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7288065 CATCAACATC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7288437 original size:45 final size:45
Alignment explanation
Indices: 7288351--7288439 Score: 117
Period size: 45 Copynumber: 2.0 Consensus size: 45
7288341 ATTGCTTGGG
*
7288351 TCAATAACATATACCTTATATCATATTCTCATGTAATCACATAGT
1 TCAATAACATATACCTTATATCATATTCTCATATAATCACATAGT
* * * *
7288396 TCAATATCATATATCTTATATCTTCTTCTCATAT-ATCCACATAG
1 TCAATAACATATACCTTATATCATATTCTCATATAAT-CACATAG
7288440 ATAATGTAAC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
44 2 0.05
45 36 0.95
ACGTcount: A:0.35, C:0.21, G:0.03, T:0.40
Consensus pattern (45 bp):
TCAATAACATATACCTTATATCATATTCTCATATAATCACATAGT
Found at i:7288960 original size:19 final size:20
Alignment explanation
Indices: 7288936--7288975 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
7288926 GGAATTCATC
7288936 CTTAAA-AATGGTACCGATA
1 CTTAAACAATGGTACCGATA
* *
7288955 CTTAAACATTGGTATCGATA
1 CTTAAACAATGGTACCGATA
7288975 C
1 C
7288976 CCCTAGTATC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (20 bp):
CTTAAACAATGGTACCGATA
Found at i:7292328 original size:219 final size:220
Alignment explanation
Indices: 7292037--7292480 Score: 723
Period size: 220 Copynumber: 2.0 Consensus size: 220
7292027 GCTGCCTGAA
* *
7292037 TGATTGCTCATTATTCTAGAAACTGAAAATTGCTTCATTGTTCGAAGAAAATGTCAAAGCTGACT
1 TGATTGCTCATTATTCTAGAAACTAAAAATTGCTTCATTGTTCAAAGAAAATGTCAAAGCTGACT
* *
7292102 TCATTTAAGTTCGATC-AAAATATTGAGTACCTGAAAATTCAAGAAAACTAAAAATAAAATAAAT
66 CCATTTAAGTTCGATCAAAAATATTGAGTACCTAAAAATTCAAGAAAACTAAAAATAAAATAAAT
* *
7292166 ACTTGATAAAAATAAAAGTAAAATAATT-AAAGTAAAGTAAAGAAACGAAACGCAAA-CAAAAAT
131 ACTTGATAAAAATAAAAGTAAAAAAATTAAAAGTAAAGTAAAGAAACAAAACG-AAAGCAAAAAT
*
7292229 GGGTTGCCTCCCATATAGTGCTTTTG
195 GGGTTGCCTCCCATAGAGTGCTTTTG
* *
7292255 TGATTTCTCATTATTCTAGAAACTAAAAAATTGCTTCATTGTTCAAAGAAAATGTCGAAGCTGAC
1 TGATTGCTCATTATTCTAGAAACT-AAAAATTGCTTCATTGTTCAAAGAAAATGTCAAAGCTGAC
7292320 TCCATTTAAGTTCGATCAAAAATATTGAGTACCTAAAAATTCAAGAAAACTAAAAATAAAATAAA
65 TCCATTTAAGTTCGATCAAAAATATTGAGTACCTAAAAATTCAAGAAAACTAAAAATAAAATAAA
7292385 TACTTGATAAAAATAAAAGTAAAAAAATTAAAGGAAAGTAAAGTAAAGAAACAAAACGAAAGCAA
130 TACTTGATAAAAATAAAAGTAAAAAAATT--A--AAAGTAAAGTAAAGAAACAAAACGAAAGCAA
*
7292450 AAATGGGTTGCCTCCCATAGAGTGTTTTTG
191 AAATGGGTTGCCTCCCATAGAGTGCTTTTG
7292480 T
1 T
7292481 TTAGCGTCGT
Statistics
Matches: 208, Mismatches: 10, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
218 23 0.11
219 53 0.25
220 74 0.36
224 3 0.01
225 55 0.26
ACGTcount: A:0.46, C:0.12, G:0.14, T:0.27
Consensus pattern (220 bp):
TGATTGCTCATTATTCTAGAAACTAAAAATTGCTTCATTGTTCAAAGAAAATGTCAAAGCTGACT
CCATTTAAGTTCGATCAAAAATATTGAGTACCTAAAAATTCAAGAAAACTAAAAATAAAATAAAT
ACTTGATAAAAATAAAAGTAAAAAAATTAAAAGTAAAGTAAAGAAACAAAACGAAAGCAAAAATG
GGTTGCCTCCCATAGAGTGCTTTTG
Found at i:7292445 original size:24 final size:24
Alignment explanation
Indices: 7292400--7292446 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
7292390 GATAAAAATA
** *
7292400 AAAGTAAAAAAATTAAAGGAAAGT
1 AAAGTAAAAAAACAAAACGAAAGT
*
7292424 AAAGTAAAGAAACAAAACGAAAG
1 AAAGTAAAAAAACAAAACGAAAG
7292447 CAAAAATGGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.68, C:0.04, G:0.17, T:0.11
Consensus pattern (24 bp):
AAAGTAAAAAAACAAAACGAAAGT
Found at i:7293596 original size:12 final size:12
Alignment explanation
Indices: 7293579--7293603 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7293569 CTTGTTTATC
7293579 TCCCTTCATTAG
1 TCCCTTCATTAG
7293591 TCCCTTCATTAG
1 TCCCTTCATTAG
7293603 T
1 T
7293604 TTAGAAGGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.32, G:0.08, T:0.44
Consensus pattern (12 bp):
TCCCTTCATTAG
Found at i:7298756 original size:37 final size:37
Alignment explanation
Indices: 7298715--7299062 Score: 227
Period size: 37 Copynumber: 9.6 Consensus size: 37
7298705 CCTTGAAACA
* * *
7298715 AAAATTTTGTCTCACTTGAGACAGATTCTCTCGAAAT
1 AAAATTTTATCTCACTTGAGATAGTTTCTCTCGAAAT
* *
7298752 AAAATTTTATCTCACTTGAGATATTTTCTCTTGAAAT
1 AAAATTTTATCTCACTTGAGATAGTTTCTCTCGAAAT
* **
7298789 -AAATTTTATTTCACTTGAGATAGTTTCTC-CTGAACC
1 AAAATTTTATCTCACTTGAGATAGTTTCTCTC-GAAAT
* **
7298825 AAAATTTTATCTCACTTGAGATATTTTCTCTTTAAAT
1 AAAATTTTATCTCACTTGAGATAGTTTCTCTCGAAAT
* * *
7298862 -AAATTTCATCTCACTTGAGACAGTTT-TCTCGAAAC
1 AAAATTTTATCTCACTTGAGATAGTTTCTCTCGAAAT
** * * * * * *
7298897 AAAGATTGCATCTCACATGTGACATTTTCCCTTG----
1 AAA-ATTTTATCTCACTTGAGATAGTTTCTCTCGAAAT
* * * * * * *
7298931 AAAATTTTCGTTTCACTCGAGACAATTTCTCTTGAAAC
1 AAAATTTT-ATCTCACTTGAGATAGTTTCTCTCGAAAT
* *
7298969 AAAATTTTATTTCACTTGAGATA-TTT-TC-C-ACAT
1 AAAATTTTATCTCACTTGAGATAGTTTCTCTCGAAAT
* * * * *
7299002 AAAATTTTTGTCTCACTCGAGACAGTTTCTCTTGTAACT
1 AAAA-TTTTATCTCACTTGAGATAGTTTCTCTCG-AAAT
*
7299041 -AAATTTTATCTTACTTGAGATA
1 AAAATTTTATCTCACTTGAGATA
7299063 TTTTACCATG
Statistics
Matches: 240, Mismatches: 54, Indels: 34
0.73 0.16 0.10
Matches are distributed among these distances:
33 9 0.04
34 36 0.15
35 11 0.05
36 60 0.25
37 108 0.45
38 14 0.06
39 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.41
Consensus pattern (37 bp):
AAAATTTTATCTCACTTGAGATAGTTTCTCTCGAAAT
Found at i:7298803 original size:73 final size:73
Alignment explanation
Indices: 7298716--7299066 Score: 319
Period size: 73 Copynumber: 4.9 Consensus size: 73
7298706 CTTGAAACAA
* * *
7298716 AAATTTTGTCTCACTTGAGACAGATTCTCTCGAAATAAAATTTTATCTCACTTGAGATATTTTCT
1 AAATTTTATTTCACTTGAGACAGATTCTCTCGAAACAAAATTTTATCTCACTTGAGATATTTTCT
7298781 CTTGAAAT
66 CTTGAAAT
* * *
7298789 AAATTTTATTTCACTTGAGATAGTTTCTC-CTGAACCAAAATTTTATCTCACTTGAGATATTTTC
1 AAATTTTATTTCACTTGAGACAGATTCTCTC-GAAACAAAATTTTATCTCACTTGAGATATTTTC
*
7298853 TCTTTAAAT
65 TCTTGAAAT
* * * ** * * *
7298862 AAATTTCATCTCACTTGAGACAG-TTTTCTCGAAACAAAGATTGCATCTCACATGTGACATTTTC
1 AAATTTTATTTCACTTGAGACAGATTCTCTCGAAACAAA-ATTTTATCTCACTTGAGATATTTTC
*
7298926 CCTTG--A-
65 TCTTGAAAT
* * * *
7298932 AAATTTTCGTTTCACTCGAGACA-ATTTCTCTTGAAACAAAATTTTATTTCACTTGAGATATTTT
1 AAATTTT-ATTTCACTTGAGACAGA-TTCTCTCGAAACAAAATTTTATCTCACTTGAGATATTTT
*
7298996 C-C---ACAT
64 CTCTTGAAAT
* * * * * *
7299002 AAAATTTT-TGTCTCACTCGAGACAGTTTCTCTTGTAACTAAATTTTATCTTACTTGAGATATTT
1 -AAATTTTAT-T-TCACTTGAGACAGATTCTCTCGAAACAAAATTTTATCTCACTTGAGATATTT
7299066 T
63 T
7299067 ACCATGAAAA
Statistics
Matches: 229, Mismatches: 36, Indels: 28
0.78 0.12 0.10
Matches are distributed among these distances:
69 2 0.01
70 8 0.03
71 86 0.38
72 25 0.11
73 108 0.47
ACGTcount: A:0.30, C:0.18, G:0.10, T:0.42
Consensus pattern (73 bp):
AAATTTTATTTCACTTGAGACAGATTCTCTCGAAACAAAATTTTATCTCACTTGAGATATTTTCT
CTTGAAAT
Found at i:7298995 original size:71 final size:70
Alignment explanation
Indices: 7298715--7299109 Score: 380
Period size: 71 Copynumber: 5.5 Consensus size: 70
7298705 CCTTGAAACA
* * * *
7298715 AAAATTTTGTCTCACTTGAGACAGATTCTCTCGAAATAAAATTTTATCTCACTTGAGATATTTTC
1 AAAATTTTGTCTCACTCGAGACAGTTTCTCTTGAAACAAAATTTTATCTCACTTGAGATATTTTC
*
7298780 TCTTG
66 CCTTG
* * * * * *
7298785 AAATAAATTTTATTTCACTTGAGATAGTTTCTCCTGAACCAAAATTTTATCTCACTTGAGATATT
1 --A-AAATTTTGTCTCACTCGAGACAGTTTCTCTTGAAACAAAATTTTATCTCACTTGAGATATT
* *
7298850 TTCTCTTTAA
63 TTC-CCTT-G
** * * ** * * *
7298860 ATAAATTTCATCTCACTTGAGACAGTTT-TCTCGAAACAAAGATTGCATCTCACATGTGACATTT
1 A-AAATTTTGTCTCACTCGAGACAGTTTCTCTTGAAACAAA-ATTTTATCTCACTTGAGATATTT
7298924 TCCCTTG
64 TCCCTTG
* * *
7298931 AAAATTTTCGTTTCACTCGAGACAATTTCTCTTGAAACAAAATTTTATTTCACTTGAGATATTTT
1 AAAATTTT-GTCTCACTCGAGACAGTTTCTCTTGAAACAAAATTTTATCTCACTTGAGATATTTT
*
7298996 CCACAT-
65 CC-CTTG
* * *
7299002 AAAATTTTTGTCTCACTCGAGACAGTTTCTCTTGTAACTAAATTTTATCTTACTTGAGATATTTT
1 AAAA-TTTTGTCTCACTCGAGACAGTTTCTCTTGAAACAAAATTTTATCTCACTTGAGATATTTT
* *
7299067 ACCATG
65 CCCTTG
* *
7299073 AAAATTTTTGTCTCACTCGATATAGTTTCTCTTGAAA
1 AAAA-TTTTGTCTCACTCGAGACAGTTTCTCTTGAAA
7299110 TGAATATCGT
Statistics
Matches: 267, Mismatches: 47, Indels: 19
0.80 0.14 0.06
Matches are distributed among these distances:
70 9 0.03
71 125 0.47
72 30 0.11
73 101 0.38
74 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.10, T:0.41
Consensus pattern (70 bp):
AAAATTTTGTCTCACTCGAGACAGTTTCTCTTGAAACAAAATTTTATCTCACTTGAGATATTTTC
CCTTG
Found at i:7300933 original size:73 final size:72
Alignment explanation
Indices: 7300822--7300959 Score: 188
Period size: 73 Copynumber: 1.9 Consensus size: 72
7300812 CTCGCTTGAG
* *
7300822 ATAGTTTTGCTTGAAACAAAATTCTGTCTACCTGGAGACAATTTTCCTCAAAACAAGTTTTATAT
1 ATAGTTTTGCTTGAAACAAAATTATGTCTACATGGAGACAATTTTCCTCAAAACAA-TTTTATAT
7300887 CAATTAAA
65 CAATTAAA
* * * * *
7300895 ATAGTTTTGCTTGAAATAAAATTATGTCT-CTATTGAGACAATTTTCCTTAGAACAATTTTTTAT
1 ATAGTTTTGCTTGAAACAAAATTATGTCTAC-ATGGAGACAATTTTCCTCAAAACAATTTTATAT
7300959 C
65 C
7300960 TTACTTAGAT
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
72 9 0.16
73 48 0.84
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.40
Consensus pattern (72 bp):
ATAGTTTTGCTTGAAACAAAATTATGTCTACATGGAGACAATTTTCCTCAAAACAATTTTATATC
AATTAAA
Found at i:7300972 original size:73 final size:74
Alignment explanation
Indices: 7300806--7300974 Score: 184
Period size: 73 Copynumber: 2.3 Consensus size: 74
7300796 AAGAATAAAA
* * * *
7300806 TTTTATCTCGCTTGAGATAGTTTTGCTTGAAACAAAATTCTGTCTACCTGGAGACAATTTTCCTC
1 TTTTATCT-ACTTAAGATAGTTTTGCTTGAAACAAAATTATGTCTACATGGAGACAATTTTCCTC
7300871 AAAACAAGTT
65 AAAACAAGTT
* * * * * *
7300881 TTATATC-AATTAAAATAGTTTTGCTTGAAATAAAATTATGTCT-CTATTGAGACAATTTTCCTT
1 TTTTATCTACTTAAGATAGTTTTGCTTGAAACAAAATTATGTCTAC-ATGGAGACAATTTTCCTC
*
7300944 AGAACAA-TT
65 AAAACAAGTT
7300953 TTTTATCTTACTT-AGATAGTTT
1 TTTTATC-TACTTAAGATAGTTT
7300975 CTTTAGAAAC
Statistics
Matches: 77, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
72 9 0.12
73 59 0.77
74 3 0.04
75 6 0.08
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42
Consensus pattern (74 bp):
TTTTATCTACTTAAGATAGTTTTGCTTGAAACAAAATTATGTCTACATGGAGACAATTTTCCTCA
AAACAAGTT
Found at i:7307905 original size:23 final size:21
Alignment explanation
Indices: 7307872--7307919 Score: 62
Period size: 20 Copynumber: 2.2 Consensus size: 21
7307862 TGACTCTCTC
7307872 AAACTATAATTTTTATATATAAAA
1 AAACTATAA-TTTTA-ATA-AAAA
7307896 AAACT-TAATTTTAATAAAAA
1 AAACTATAATTTTAATAAAAA
7307916 AAAC
1 AAAC
7307920 AAACCCTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 8 0.33
21 3 0.12
22 5 0.21
23 3 0.12
24 5 0.21
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (21 bp):
AAACTATAATTTTAATAAAAA
Found at i:7308978 original size:15 final size:15
Alignment explanation
Indices: 7308960--7308990 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
7308950 AGAAGAGAAA
7308960 TCTCCCAAGCACGAT
1 TCTCCCAAGCACGAT
7308975 TCTCCCAAGCACGAT
1 TCTCCCAAGCACGAT
7308990 T
1 T
7308991 ATGCCAATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.39, G:0.13, T:0.23
Consensus pattern (15 bp):
TCTCCCAAGCACGAT
Found at i:7308997 original size:15 final size:15
Alignment explanation
Indices: 7308962--7308997 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
7308952 AAGAGAAATC
*
7308962 TCCCAAGCACGATTC
1 TCCCAAGCACGATTA
7308977 TCCCAAGCACGATTA
1 TCCCAAGCACGATTA
*
7308992 TGCCAA
1 TCCCAA
7308998 TCACTAATGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.31, C:0.36, G:0.14, T:0.19
Consensus pattern (15 bp):
TCCCAAGCACGATTA
Found at i:7314015 original size:175 final size:175
Alignment explanation
Indices: 7313723--7314070 Score: 669
Period size: 175 Copynumber: 2.0 Consensus size: 175
7313713 AGCGTCAACC
7313723 ACCATGGAAGGTAGAAAGAGGTTTGCAAATATATGACTCGTTGATTCGGGAGTAATATATAACAT
1 ACCATGGAAGGTAGAAAGAGGTTTGCAAATATATGACTCGTTGATTCGGGAGTAATATATAACAT
7313788 GACCTCAATAAGAGAATGGTTTCATCATTATGAACCTGTCTCAAGAGGATCTGTGTATAGTTGCA
66 GACCTCAATAAGAGAATGGTTTCATCATTATGAACCTGTCTCAAGAGGATCTGTGTATAGTTGCA
7313853 ATGATCATGCCTTAGAGATTGTTGGCGTTGGAATCATCAAATTAA
131 ATGATCATGCCTTAGAGATTGTTGGCGTTGGAATCATCAAATTAA
7313898 ACCATGGAAGGTAGAAAGAGGTTTGCAAATATATGACTCGTTGATTCGGGAGTAATATATAACAT
1 ACCATGGAAGGTAGAAAGAGGTTTGCAAATATATGACTCGTTGATTCGGGAGTAATATATAACAT
* * *
7313963 GACCTCAATAAGAGAATGGTTTCATCGTTATGAACCTGTCTCAGGGGGATCTGTGTATAGTTGCA
66 GACCTCAATAAGAGAATGGTTTCATCATTATGAACCTGTCTCAAGAGGATCTGTGTATAGTTGCA
7314028 ATGATCATGCCTTAGAGATTGTTGGCGTTGGAATCATCAAATT
131 ATGATCATGCCTTAGAGATTGTTGGCGTTGGAATCATCAAATT
7314071 GAAGATGTAT
Statistics
Matches: 170, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
175 170 1.00
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (175 bp):
ACCATGGAAGGTAGAAAGAGGTTTGCAAATATATGACTCGTTGATTCGGGAGTAATATATAACAT
GACCTCAATAAGAGAATGGTTTCATCATTATGAACCTGTCTCAAGAGGATCTGTGTATAGTTGCA
ATGATCATGCCTTAGAGATTGTTGGCGTTGGAATCATCAAATTAA
Found at i:7317818 original size:16 final size:15
Alignment explanation
Indices: 7317783--7317821 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
7317773 TCCCCATCTC
*
7317783 TAATTTTTTTTTACA
1 TAATTTTTTTCTACA
*
7317798 TAATTTTATTTCTATA
1 TAATTTT-TTTCTACA
7317814 TAATTTTT
1 TAATTTTT
7317822 CAATGATTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (15 bp):
TAATTTTTTTCTACA
Found at i:7318613 original size:24 final size:24
Alignment explanation
Indices: 7318548--7318615 Score: 82
Period size: 24 Copynumber: 2.8 Consensus size: 24
7318538 ATGAGTACTA
* *
7318548 GTCAATATTGGAAATTTGATCTTG
1 GTCAATACTCGAAATTTGATCTTG
* * *
7318572 GTCAATACCCGGACTTTGATCTTG
1 GTCAATACTCGAAATTTGATCTTG
*
7318596 GTCAATACTCGAATTTTGAT
1 GTCAATACTCGAAATTTGAT
7318616 GAGGTTTCAG
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.38
Consensus pattern (24 bp):
GTCAATACTCGAAATTTGATCTTG
Found at i:7320893 original size:18 final size:18
Alignment explanation
Indices: 7320870--7320905 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
7320860 AAGAAAAAGG
7320870 AAATCAAAATCGCAATCA
1 AAATCAAAATCGCAATCA
*
7320888 AAATCAAAATCTCAATCA
1 AAATCAAAATCGCAATCA
7320906 CAACCAGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.56, C:0.22, G:0.03, T:0.19
Consensus pattern (18 bp):
AAATCAAAATCGCAATCA
Found at i:7321174 original size:29 final size:29
Alignment explanation
Indices: 7321141--7321201 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 29
7321131 AAATTCGTAA
* *
7321141 CGCAAAAATCGCAATGCGAATTTGACTTT
1 CGCAAAAATCGCAACGCAAATTTGACTTT
*
7321170 CGCAACAATCGCAACGCAAATTTGACTTT
1 CGCAAAAATCGCAACGCAAATTTGACTTT
7321199 CGC
1 CGC
7321202 GTTACGAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (29 bp):
CGCAAAAATCGCAACGCAAATTTGACTTT
Found at i:7321318 original size:25 final size:25
Alignment explanation
Indices: 7321280--7321329 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
7321270 AAATCAATTA
*
7321280 AACATTGTTGTGGGTACATTATTTG
1 AACATTGTTATGGGTACATTATTTG
7321305 AACATTGTTATGGGTACATTATTTG
1 AACATTGTTATGGGTACATTATTTG
7321330 GAAAATAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.26, C:0.08, G:0.22, T:0.44
Consensus pattern (25 bp):
AACATTGTTATGGGTACATTATTTG
Found at i:7321735 original size:18 final size:18
Alignment explanation
Indices: 7321714--7321750 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
7321704 GTAATTGGAG
7321714 TTTGAATTTCAATTTCAA
1 TTTGAATTTCAATTTCAA
* *
7321732 TTTGAGTTTGAATTTCAA
1 TTTGAATTTCAATTTCAA
7321750 T
1 T
7321751 ATAAATTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.30, C:0.08, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTCAATTTCAA
Found at i:7321757 original size:24 final size:24
Alignment explanation
Indices: 7321706--7321758 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
7321696 TTTCATATGT
* * *
7321706 AATTGGAGTTTGAATTTCAATTTC
1 AATTTGAGTTTGAATTTCAATATA
7321730 AATTTGAGTTTGAATTTCAATATA
1 AATTTGAGTTTGAATTTCAATATA
7321754 AATTT
1 AATTT
7321759 CGGCTCCACT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.34, C:0.06, G:0.13, T:0.47
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTCAATATA
Found at i:7322971 original size:20 final size:20
Alignment explanation
Indices: 7322946--7323046 Score: 141
Period size: 20 Copynumber: 5.0 Consensus size: 20
7322936 AAATTGCAAC
7322946 GCGAATTTGACTTTCGTC-TT
1 GCGAATTTGACTTTCG-CGTT
*
7322966 GCGAATTTGACTTTTGCGTT
1 GCGAATTTGACTTTCGCGTT
* **
7322986 GCGAATTTGACTATCGCAAT
1 GCGAATTTGACTTTCGCGTT
7323006 GCGAATTTGACTTTCGCGTT
1 GCGAATTTGACTTTCGCGTT
*
7323026 GCAAATTTGACTTTCGCGTT
1 GCGAATTTGACTTTCGCGTT
7323046 G
1 G
7323047 TGAAAGTGTA
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
19 1 0.01
20 70 0.99
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.40
Consensus pattern (20 bp):
GCGAATTTGACTTTCGCGTT
Found at i:7323170 original size:37 final size:37
Alignment explanation
Indices: 7323120--7323254 Score: 125
Period size: 37 Copynumber: 3.5 Consensus size: 37
7323110 CAAATCAACT
7323120 TTTACAAATCAATTAAACAAGCAAAAAATAATTCTTA
1 TTTACAAATCAATTAAACAAGCAAAAAATAATTCTTA
* *
7323157 TTTACACATCAATTAAACAAATCAACTTTTACAAATCAA--C-T-
1 TTTACAAATCAATTAAAC-AAGCAA-----A-AAAT-AATTCTTA
7323198 TTTACAAATCAATTAAACAAGCAAAAAATAATTCTTA
1 TTTACAAATCAATTAAACAAGCAAAAAATAATTCTTA
* **
7323235 TTTCCTCATCAATTAAACAA
1 TTTACAAATCAATTAAACAA
7323255 ATCAACTTTT
Statistics
Matches: 79, Mismatches: 7, Indels: 24
0.72 0.06 0.22
Matches are distributed among these distances:
33 2 0.03
34 4 0.05
35 2 0.03
36 1 0.01
37 34 0.43
38 5 0.06
40 5 0.06
41 17 0.22
42 1 0.01
43 2 0.03
44 4 0.05
45 2 0.03
ACGTcount: A:0.50, C:0.18, G:0.01, T:0.31
Consensus pattern (37 bp):
TTTACAAATCAATTAAACAAGCAAAAAATAATTCTTA
Found at i:7323192 original size:14 final size:14
Alignment explanation
Indices: 7323173--7323209 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
7323163 CATCAATTAA
7323173 ACAAATCAACTTTT
1 ACAAATCAACTTTT
7323187 ACAAATCAACTTTT
1 ACAAATCAACTTTT
7323201 ACAAATCAA
1 ACAAATCAA
7323210 TTAAACAAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:7323245 original size:78 final size:78
Alignment explanation
Indices: 7323109--7323301 Score: 329
Period size: 78 Copynumber: 2.5 Consensus size: 78
7323099 ATTTCAAACA
7323109 ACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAATAATTCTTATTTACACATCAATTAAA
1 ACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAATAATTCTTATTTACACATCAATTAAA
7323174 CAAATCAACTTTT
66 CAAATCAACTTTT
* *
7323187 ACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAATAATTCTTATTTCCTCATCAATTAAA
1 ACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAATAATTCTTATTTACACATCAATTAAA
7323252 CAAATCAACTTTT
66 CAAATCAACTTTT
*
7323265 ACAAATCAA--TGTA-AAATTCAATTAAACAAGCAAAAAA
1 ACAAATCAACTTTTACAAA-TCAATTAAACAAGCAAAAAA
7323302 AGTGTACCCC
Statistics
Matches: 111, Mismatches: 3, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
75 3 0.03
76 23 0.21
78 85 0.77
ACGTcount: A:0.51, C:0.18, G:0.02, T:0.29
Consensus pattern (78 bp):
ACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAATAATTCTTATTTACACATCAATTAAA
CAAATCAACTTTT
Found at i:7324657 original size:21 final size:21
Alignment explanation
Indices: 7324631--7324749 Score: 96
Period size: 21 Copynumber: 5.7 Consensus size: 21
7324621 GTGAATCGGG
* * * *
7324631 CTCTTGAATGGTGGGAGGGAC
1 CTCTTGAACGATGAGAGGGGC
* **
7324652 CTCTTGAACGATGATATAGGC
1 CTCTTGAACGATGAGAGGGGC
* *
7324673 CTCTTGAATGATGACAGGGGC
1 CTCTTGAACGATGAGAGGGGC
* *
7324694 CTCTTGAACGGTGGGAGGGGC
1 CTCTTGAACGATGAGAGGGGC
* *
7324715 CTCTTGAACGAT-ATGAAGCGC
1 CTCTTGAACGATGA-GAGGGGC
*
7324736 CTCTTGAATGATGA
1 CTCTTGAACGATGA
7324750 CAGGTGAATC
Statistics
Matches: 76, Mismatches: 20, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
21 75 0.99
22 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.25
Consensus pattern (21 bp):
CTCTTGAACGATGAGAGGGGC
Found at i:7324708 original size:63 final size:63
Alignment explanation
Indices: 7324631--7324753 Score: 196
Period size: 63 Copynumber: 2.0 Consensus size: 63
7324621 GTGAATCGGG
*
7324631 CTCTTGAATGGTGGGAGGGACCTCTTGAACGATGAT-ATAG-GCCTCTTGAATGATGACAGGGGC
1 CTCTTGAACGGTGGGAGGGACCTCTTGAACGAT-ATGA-AGCGCCTCTTGAATGATGACAGGGGC
*
7324694 CTCTTGAACGGTGGGAGGGGCCTCTTGAACGATATGAAGCGCCTCTTGAATGATGACAGG
1 CTCTTGAACGGTGGGAGGGACCTCTTGAACGATATGAAGCGCCTCTTGAATGATGACAGG
7324754 TGAATCGGGC
Statistics
Matches: 56, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
62 4 0.07
63 52 0.93
ACGTcount: A:0.24, C:0.19, G:0.33, T:0.24
Consensus pattern (63 bp):
CTCTTGAACGGTGGGAGGGACCTCTTGAACGATATGAAGCGCCTCTTGAATGATGACAGGGGC
Found at i:7325191 original size:21 final size:21
Alignment explanation
Indices: 7325156--7325221 Score: 105
Period size: 21 Copynumber: 3.1 Consensus size: 21
7325146 ACCATTATCT
* *
7325156 TCACGTAAAGTACCGACCTCA
1 TCACGCAAAGCACCGACCTCA
*
7325177 TGACGCAAAGCACCGACCTCA
1 TCACGCAAAGCACCGACCTCA
7325198 TCACGCAAAGCACCGACCTCA
1 TCACGCAAAGCACCGACCTCA
7325219 TCA
1 TCA
7325222 TGTAACTCCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.33, C:0.38, G:0.15, T:0.14
Consensus pattern (21 bp):
TCACGCAAAGCACCGACCTCA
Found at i:7326936 original size:20 final size:20
Alignment explanation
Indices: 7326908--7326991 Score: 116
Period size: 20 Copynumber: 4.2 Consensus size: 20
7326898 AAACTTAAAT
* *
7326908 TCGCAACGCGAACATGAAAA
1 TCGCAACGCAAAAATGAAAA
*
7326928 TCACAACGCAAAAATGAAAA
1 TCGCAACGCAAAAATGAAAA
7326948 TCGCAACGCAAAAATGAAAA
1 TCGCAACGCAAAAATGAAAA
* *
7326968 TCGCAACGCGAAACT-AAAA
1 TCGCAACGCAAAAATGAAAA
7326987 TCGCA
1 TCGCA
7326992 TTGCGATTTT
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
19 9 0.16
20 49 0.84
ACGTcount: A:0.50, C:0.24, G:0.15, T:0.11
Consensus pattern (20 bp):
TCGCAACGCAAAAATGAAAA
Found at i:7327426 original size:22 final size:22
Alignment explanation
Indices: 7327400--7327453 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
7327390 GAGATAGACA
*
7327400 GATTTTGCCAGAGATGGGGACG
1 GATTTCGCCAGAGATGGGGACG
* *
7327422 GATTTCGTCGGAGATGGGGACG
1 GATTTCGCCAGAGATGGGGACG
*
7327444 GATGTCGCCA
1 GATTTCGCCA
7327454 TAGAGAGTGA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.20, C:0.17, G:0.41, T:0.22
Consensus pattern (22 bp):
GATTTCGCCAGAGATGGGGACG
Found at i:7327630 original size:20 final size:20
Alignment explanation
Indices: 7327601--7327730 Score: 215
Period size: 20 Copynumber: 6.5 Consensus size: 20
7327591 TAAACGCGCT
7327601 TTGCGAATTTGACTTTTGTG
1 TTGCGAATTTGACTTTTGTG
* * *
7327621 TTGTGAATTTCACTTCTGTG
1 TTGCGAATTTGACTTTTGTG
7327641 TTGCGAATTTGACTTTTGTG
1 TTGCGAATTTGACTTTTGTG
*
7327661 TTACGAATTTGACTTTTGTG
1 TTGCGAATTTGACTTTTGTG
7327681 TTGCGAATTTGACTTTTGTG
1 TTGCGAATTTGACTTTTGTG
*
7327701 TTGCGAATTTGACTTCTGTG
1 TTGCGAATTTGACTTTTGTG
7327721 TTGCGAATTT
1 TTGCGAATTT
7327731 AGAAACTGGG
Statistics
Matches: 101, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 101 1.00
ACGTcount: A:0.16, C:0.12, G:0.23, T:0.49
Consensus pattern (20 bp):
TTGCGAATTTGACTTTTGTG
Found at i:7327744 original size:60 final size:60
Alignment explanation
Indices: 7327620--7327751 Score: 158
Period size: 60 Copynumber: 2.2 Consensus size: 60
7327610 TGACTTTTGT
* * * *** *
7327620 GTTGTGAATTTCACTTCTGTGTTGCGAATTTGACTTTTGTGTTACGAATTTGACTTTTGT
1 GTTGCGAATTTGACTTCTGTGTTGCGAATTTGACTTCTGTGTTACGAATTTGACAACTGG
* *
7327680 GTTGCGAATTTGACTTTTGTGTTGCGAATTTGACTTCTGTGTTGCGAATTTAGA-AACTGG
1 GTTGCGAATTTGACTTCTGTGTTGCGAATTTGACTTCTGTGTTACGAATTT-GACAACTGG
*
7327740 GTTGCAAATTTG
1 GTTGCGAATTTG
7327752 TTGGTTATTT
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
60 59 0.97
61 2 0.03
ACGTcount: A:0.19, C:0.11, G:0.24, T:0.45
Consensus pattern (60 bp):
GTTGCGAATTTGACTTCTGTGTTGCGAATTTGACTTCTGTGTTACGAATTTGACAACTGG
Found at i:7330047 original size:2 final size:2
Alignment explanation
Indices: 7330036--7330104 Score: 72
Period size: 2 Copynumber: 34.5 Consensus size: 2
7330026 TTGAAACAAT
7330036 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TGA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA
* *
7330077 CTA TA TA TA T- TA TG TA TA AA CTA TA TA T
1 -TA TA TA TA TA TA TA TA TA TA -TA TA TA T
7330105 TTTATTAATA
Statistics
Matches: 57, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
1 3 0.05
2 51 0.89
3 3 0.05
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (2 bp):
TA
Found at i:7330065 original size:20 final size:21
Alignment explanation
Indices: 7330040--7330104 Score: 82
Period size: 20 Copynumber: 3.2 Consensus size: 21
7330030 AACAATTATA
7330040 ATATATATATATATATA-TAT
1 ATATATATATATATATACTAT
7330060 ATATATATATATATGA-ACTAT
1 ATATATATATATAT-ATACTAT
* *
7330081 ATATAT-TATGTATAAACTAT
1 ATATATATATATATATACTAT
7330101 ATAT
1 ATAT
7330105 TTTATTAATA
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
19 1 0.02
20 30 0.73
21 10 0.24
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (21 bp):
ATATATATATATATATACTAT
Found at i:7330165 original size:22 final size:21
Alignment explanation
Indices: 7330055--7330166 Score: 72
Period size: 20 Copynumber: 5.3 Consensus size: 21
7330045 TATATATATA
* *
7330055 TATATATATATATATATATGAAC
1 TATATATTTAT-TA-ATATAAAC
*
7330078 TATATA--TATTATGTATAAAC
1 TATATATTTATTA-ATATAAAC
7330098 TATATATTTTATTAATATAAA-
1 TATATA-TTTATTAATATAAAC
* * * *
7330119 T-TATATATA-AAATATACAG
1 TATATATTTATTAATATAAAC
*
7330138 TGTATAGTTTATTAATATAAAC
1 TATATA-TTTATTAATATAAAC
7330160 TATATAT
1 TATATAT
7330167 GAAATATATT
Statistics
Matches: 71, Mismatches: 11, Indels: 16
0.72 0.11 0.16
Matches are distributed among these distances:
18 7 0.10
19 4 0.06
20 23 0.32
21 8 0.11
22 18 0.25
23 11 0.15
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (21 bp):
TATATATTTATTAATATAAAC
Found at i:7330205 original size:30 final size:30
Alignment explanation
Indices: 7330118--7330227 Score: 107
Period size: 30 Copynumber: 3.6 Consensus size: 30
7330108 ATTAATATAA
* * * *
7330118 ATTATATATAAAATATACAGTGTATAGTTT
1 ATTATATATAAACTATATAGTATATATTTT
*
7330148 ATTA-ATATAAACTATATATGAAATATATTTT
1 ATTATATATAAACTATATA-G-TATATATTTT
* *
7330179 TTTATATATAAACTATATAGTTTATATTTAT
1 ATTATATATAAACTATATAGTATATATTT-T
*
7330210 ATTAT-TATATACTATATA
1 ATTATATATAAACTATATA
7330228 TAAACTATCT
Statistics
Matches: 66, Mismatches: 10, Indels: 8
0.79 0.12 0.10
Matches are distributed among these distances:
29 12 0.18
30 24 0.36
31 16 0.24
32 14 0.21
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.48
Consensus pattern (30 bp):
ATTATATATAAACTATATAGTATATATTTT
Found at i:7330333 original size:81 final size:83
Alignment explanation
Indices: 7330182--7330334 Score: 206
Period size: 83 Copynumber: 1.9 Consensus size: 83
7330172 ATATTTTTTT
* * * **
7330182 ATATATAAACTATATAGTTTATATTTATATTATTATATACTATATATAAACTATCTATATATTAA
1 ATATATAAACTATAGAGTTTATATTGATAATATTATATACTATATATAAACTAAATATATATTAA
7330247 GTATAAACTATGTATACC
66 GTATAAACTATGTATACC
*
7330265 ATATATAAACTATAGAGTTTATATATGA-AATATTA-A-ACTATATATAAACTAAATAGTTTATT
1 ATATATAAACTATAGAGTTTATAT-TGATAATATTATATACTATATATAAACTAAATA-TATATT
7330327 AA-TATAAA
64 AAGTATAAA
7330335 TTCTATAGTT
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
81 23 0.37
82 8 0.13
83 29 0.47
84 2 0.03
ACGTcount: A:0.47, C:0.07, G:0.05, T:0.42
Consensus pattern (83 bp):
ATATATAAACTATAGAGTTTATATTGATAATATTATATACTATATATAAACTAAATATATATTAA
GTATAAACTATGTATACC
Found at i:7330342 original size:22 final size:20
Alignment explanation
Indices: 7330265--7330543 Score: 130
Period size: 20 Copynumber: 13.8 Consensus size: 20
7330255 TATGTATACC
* *
7330265 ATATATAAACTATAGAGTTT
1 ATATATAAATTATATAGTTT
***
7330285 ATATATGAAA-TAT-TAAACT
1 ATATAT-AAATTATATAGTTT
* *
7330304 ATATATAAACTAAATAGTTT
1 ATATATAAATTATATAGTTT
*
7330324 ATTAATATAAATTCTATAGTTT
1 A-T-ATATAAATTATATAGTTT
*
7330346 ATATATAAATTATATATGAATT
1 ATATATAAATTATATA-G-TTT
* * **
7330368 ATATTTAAATATATACAACTT
1 ATATATAAAT-TATATAGTTT
* * *
7330389 ATATTTATA-TAT-TA-TGT
1 ATATATAAATTATATAGTTT
7330406 ATAATTATAAATTATATA-TATT
1 AT-A-TATAAATTATATAGT-TT
*
7330428 ATGTATAAATTATATAGTTT
1 ATATATAAATTATATAGTTT
*
7330448 ATTAATATAAA--ATATA-TAT
1 A-T-ATATAAATTATATAGTTT
* *
7330467 AAACTATAAATTATATA-TACT
1 ATA-TATAAATTATATAGT-TT
*
7330488 ATTTATAAATTATATAGTTT
1 ATATATAAATTATATAGTTT
* * *
7330508 AAATATAAAGTATATA-TAT
1 ATATATAAATTATATAGTTT
*
7330527 AAACTATAAATTATATA
1 ATA-TATAAATTATATA
7330544 TATATACATA
Statistics
Matches: 200, Mismatches: 37, Indels: 44
0.71 0.13 0.16
Matches are distributed among these distances:
17 4 0.02
18 11 0.05
19 25 0.12
20 95 0.47
21 24 0.12
22 36 0.18
23 5 0.03
ACGTcount: A:0.48, C:0.03, G:0.04, T:0.44
Consensus pattern (20 bp):
ATATATAAATTATATAGTTT
Found at i:7330350 original size:81 final size:80
Alignment explanation
Indices: 7330179--7330359 Score: 190
Period size: 81 Copynumber: 2.2 Consensus size: 80
7330169 AATATATTTT
* * * **
7330179 TTTATATATAAACTATATAGTTTATATTTATATTATTATATACTATATATAAACTATCTATATAT
1 TTTATATATAAACTATAGAGTTTATATTGATAATATTATATACTATATATAAACTAAATATATAT
7330244 TAAGTATAAACTATG
66 TAAGTATAAACTATG
*
7330259 TATACCATATATAAACTATAGAGTTTATATATGA-AATATTA-A-ACTATATATAAACTAAATAG
1 T-T--TATATATAAACTATAGAGTTTATAT-TGATAATATTATATACTATATATAAACTAAATA-
*
7330321 TTTATTAA-TATAAATTCTATAG
61 TATATTAAGTATAAA--CTAT-G
*
7330343 TTTATATATAAATTATA
1 TTTATATATAAACTATA
7330360 TATGAATTAT
Statistics
Matches: 84, Mismatches: 9, Indels: 15
0.78 0.08 0.14
Matches are distributed among these distances:
80 1 0.01
81 37 0.44
82 8 0.10
83 34 0.40
84 4 0.05
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.44
Consensus pattern (80 bp):
TTTATATATAAACTATAGAGTTTATATTGATAATATTATATACTATATATAAACTAAATATATAT
TAAGTATAAACTATG
Found at i:7330382 original size:21 final size:22
Alignment explanation
Indices: 7330344--7330404 Score: 65
Period size: 21 Copynumber: 2.9 Consensus size: 22
7330334 ATTCTATAGT
*
7330344 TTATATATAAATTATATATGAA-
1 TTATATTTAAA-TATATATGAAC
*
7330366 TTATATTTAAATATATA-CAAC
1 TTATATTTAAATATATATGAAC
*
7330387 TTATATTTATATAT-TATG
1 TTATATTTAAATATATATG
7330405 TATAATTATA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
20 4 0.12
21 19 0.58
22 10 0.30
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.49
Consensus pattern (22 bp):
TTATATTTAAATATATATGAAC
Found at i:7330475 original size:60 final size:59
Alignment explanation
Indices: 7330411--7330546 Score: 220
Period size: 60 Copynumber: 2.3 Consensus size: 59
7330401 TATGTATAAT
7330411 TATAAATTATATATATTATGTATAAATTATATAGTTTATTAATATAAA-ATATATATAAAC
1 TATAAATTATATATATTATGTATAAATTATATAGTTTA--AATATAAAGATATATATAAAC
* *
7330471 TATAAATTATATATACTATTTATAAATTATATAGTTTAAATATAAAGTATATATATAAAC
1 TATAAATTATATATATTATGTATAAATTATATAGTTTAAATATAAAG-ATATATATAAAC
7330531 TATAAATTATATATAT
1 TATAAATTATATATAT
7330547 ATACATAATA
Statistics
Matches: 71, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
58 8 0.11
60 63 0.89
ACGTcount: A:0.50, C:0.02, G:0.03, T:0.45
Consensus pattern (59 bp):
TATAAATTATATATATTATGTATAAATTATATAGTTTAAATATAAAGATATATATAAAC
Found at i:7330485 original size:11 final size:11
Alignment explanation
Indices: 7330344--7330474 Score: 78
Period size: 11 Copynumber: 12.5 Consensus size: 11
7330334 ATTCTATAGT
7330344 TTATATATAAA
1 TTATATATAAA
*
7330355 TTATATATGAA
1 TTATATATAAA
*
7330366 TTATATTTAAA
1 TTATATATAAA
* *
7330377 -TATATACAAC
1 TTATATATAAA
* *
7330387 TTATATTTATA
1 TTATATATAAA
**
7330398 -TAT-TATGTA
1 TTATATATAAA
*
7330407 TAAT-TATAAA
1 TTATATATAAA
7330417 TTATATAT--A
1 TTATATATAAA
*
7330426 TTATGTATAAA
1 TTATATATAAA
**
7330437 TTATATAGTTTA
1 TTATATA-TAAA
7330449 TTA-ATATAAA
1 TTATATATAAA
*
7330459 ATATATATAAA
1 TTATATATAAA
*
7330470 CTATA
1 TTATA
7330475 AATTATATAT
Statistics
Matches: 89, Mismatches: 24, Indels: 14
0.70 0.19 0.11
Matches are distributed among these distances:
9 12 0.13
10 23 0.26
11 49 0.55
12 5 0.06
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.47
Consensus pattern (11 bp):
TTATATATAAA
Found at i:7330561 original size:20 final size:20
Alignment explanation
Indices: 7330459--7330595 Score: 93
Period size: 20 Copynumber: 6.8 Consensus size: 20
7330449 TTAATATAAA
*
7330459 ATATATATAAACTATAAATT
1 ATATATATAAACTATAAAAT
** *
7330479 ATATATACT-ATTTATAAATT
1 ATATATA-TAAACTATAAAAT
* *
7330499 ATATAGTTTAAA-TATAAAGT
1 ATATA-TATAAACTATAAAAT
*
7330519 ATATATATAAACTATAAATT
1 ATATATATAAACTATAAAAT
*
7330539 ATATATATATAC-ATAATAAT
1 ATATATATAAACTATAA-AAT
* * **
7330559 ATAAAGTAT-AAGTATATTAT
1 ATATA-TATAAACTATAAAAT
*
7330579 ATATATATAAAGTATAA
1 ATATATATAAACTATAA
7330596 TTACAAAGAC
Statistics
Matches: 93, Mismatches: 16, Indels: 16
0.74 0.13 0.13
Matches are distributed among these distances:
19 12 0.13
20 72 0.77
21 9 0.10
ACGTcount: A:0.53, C:0.03, G:0.04, T:0.41
Consensus pattern (20 bp):
ATATATATAAACTATAAAAT
Found at i:7330582 original size:60 final size:60
Alignment explanation
Indices: 7330411--7330595 Score: 180
Period size: 60 Copynumber: 3.1 Consensus size: 60
7330401 TATGTATAAT
* ** * * *
7330411 TATAAATTATATATATTATGTATAAATTATATAGTTTATTAATATAAA--ATATATATAAAC
1 TATAAATTATATATACTATACATAAAATATAAAG--TATAAATATAAAGTATATATATAAAC
** * * *
7330471 TATAAATTATATATACTATTTATAAATTATATAGTTTAAATATAAAGTATATATATAAAC
1 TATAAATTATATATACTATACATAAAATATAAAGTATAAATATAAAGTATATATATAAAC
* * *
7330531 TATAAATTATATATA-TATACATAATAATATAAAGTATAAGTATATTA-TATATATATAAAG
1 TATAAATTATATATACTATACATAA-AATATAAAGTATAAATATA-AAGTATATATATAAAC
7330591 TATAA
1 TATAA
7330596 TTACAAAGAC
Statistics
Matches: 109, Mismatches: 12, Indels: 8
0.84 0.09 0.06
Matches are distributed among these distances:
58 10 0.09
59 7 0.06
60 91 0.83
61 1 0.01
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.43
Consensus pattern (60 bp):
TATAAATTATATATACTATACATAAAATATAAAGTATAAATATAAAGTATATATATAAAC
Found at i:7330749 original size:171 final size:167
Alignment explanation
Indices: 7330531--7331332 Score: 665
Period size: 171 Copynumber: 4.7 Consensus size: 167
7330521 ATATATAAAC
* * * * *
7330531 TATAAATTATATATATATACATAATAATATAAAGTATAAGTATATTATATATATATAAAGTATAA
1 TATAAAGTATACATACATATATAAAAATATAAAGTATAAGTATATTATATATATATAAA-TATAA
* * *
7330596 T-TACAAAGACTAACGTATATAAGTATATAATAAAAAGTATATAAGTATATAAAGTATATATACA
65 TATACAAAGA-TAAAGTATATAAATATATAATATAAAGTATATAAGTATATAAAG--TATATA-A
7330660 TATAAAGAATAAGTATGTATATATATATATATAAAGTTTTAG
126 TATAAAGAATAAGTATGTATATATATATATATAAAGTTTTAG
*
7330702 TATAAAGTATACATACATATATAAAAATAAAAAGTATAAGTATATTATATATATATATATATATA
1 TATAAAGTATACATACATATATAAAAATATAAAGTATAAGTATATTATATATATATA-A-ATATA
* * *
7330767 TATATATATAATGATTAAAGTATATAAACATATAATATAAAGTATATAAGTATATAAAGTATGT-
64 -ATATACA-AA-GA-TAAAGTATATAAATATATAATATAAAGTATATAAGTATATAAAGTATATA
* * *
7330831 ATATAAACAATAA--A-GTAAAAGTATATATATATAATGTTTTAG
125 ATATAAAGAATAAGTATGT-ATA-TATATATATATAAAGTTTTAG
* * * *
7330873 TATAAAGTATATATACATATATAATAATATAAATTATAAG--TATTATATATATATATATATATA
1 TATAAAGTATACATACATATATAAAAATATAAAGTATAAGTATATTATATATATATAAATATA-A
* * * * * * *
7330936 TATATATATATAAAG--CATAATTATA-AAGATTAAAGTATATAAGCATTATAAAAGTATATAAG
65 TATACAAAGATAAAGTATATAAATATATAATA-TAAAGTATATAAGTA-TAT-AAAGTATATAA-
* * * * *
7330998 TATATAATATATAAGTATTGAATATAAAGTATATATATA--TAT-G
126 TATA-AAGA-ATAAGTA-TGTATATATA-TATATATAAAGTTTTAG
* *** * * * * * * * *
7331041 CA-CGTGTATA-ATA-ATATATATATATATAATGTTTTAGTATAAAGTATATATACATACATAAT
1 TATAAAGTATACATACATATATAAAAATATAAAGTATAAGTAT--ATTATATATATATAAAT-AT
** *
7331103 AATATA-AATTAT-AAGTATAT-TATATAT-ATATAAAGAATAATTATAAAGACTAACGTATATA
63 AATATACAAAGATAAAGTATATAAATATATAATATAAAG--T-A-TAT-AAG--T-A--TATA-A
*
7331164 AGTATATAATATAAAGTATAAGTATGTATATATATATATATATAAGTTTTAG
117 AGTATATAATATAAAGAATAAGTATGTATATATATATATATA-AAGTTTTAG
*
7331216 TACAAAGTATACATACATATATAAAAATATAAAGTATAAGTATATTATATATATATAAAGTATAA
1 TATAAAGTATACATACATATATAAAAATATAAAGTATAAGTATATTATATATATATAAA-TATAA
*
7331281 T-TACAAAGACTAAAGTATATAAACATATAATATAAAGTATATAAGTATATAA
65 TATACAAAGA-TAAAGTATATAAATATATAATATAAAGTATATAAGTATATAA
7331333 TATAAAGTAT
Statistics
Matches: 500, Mismatches: 80, Indels: 104
0.73 0.12 0.15
Matches are distributed among these distances:
161 3 0.01
162 21 0.04
163 3 0.01
164 13 0.03
165 19 0.04
166 8 0.02
167 30 0.06
168 16 0.03
169 42 0.08
170 15 0.03
171 128 0.26
172 31 0.06
173 11 0.02
174 11 0.02
175 15 0.03
176 84 0.17
177 6 0.01
178 31 0.06
179 5 0.01
180 8 0.02
ACGTcount: A:0.52, C:0.03, G:0.08, T:0.37
Consensus pattern (167 bp):
TATAAAGTATACATACATATATAAAAATATAAAGTATAAGTATATTATATATATATAAATATAAT
ATACAAAGATAAAGTATATAAATATATAATATAAAGTATATAAGTATATAAAGTATATAATATAA
AGAATAAGTATGTATATATATATATATAAAGTTTTAG
Found at i:7330754 original size:2 final size:2
Alignment explanation
Indices: 7330742--7330947 Score: 89
Period size: 2 Copynumber: 105.0 Consensus size: 2
7330732 AAAGTATAAG
7330742 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TGA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA
* * * *
7330782 TA AA GTA TA TA AA CA TA TA -A TA TA AA GTA TA TA -A GTA TA TA
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA -TA TA TA
* * * * * *
7330823 AA GTA TG TA TA TA AA CA -A TA AA GTA -A AA GTA TA TA TA TA TA
1 TA -TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA TA
* * * *
7330864 -A TG T- TT TA GTA TA AA GTA TA TA TA CA TA TA TA -A TA -A TA TA
1 TA TA TA TA TA -TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA
*
7330904 AA T- TA TA -A GTA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7330944 TA TA
1 TA TA
7330948 AAGCATAATT
Statistics
Matches: 156, Mismatches: 24, Indels: 48
0.68 0.11 0.21
Matches are distributed among these distances:
1 14 0.09
2 130 0.83
3 12 0.08
ACGTcount: A:0.51, C:0.01, G:0.06, T:0.41
Consensus pattern (2 bp):
TA
Found at i:7330876 original size:43 final size:43
Alignment explanation
Indices: 7330752--7330876 Score: 125
Period size: 43 Copynumber: 2.9 Consensus size: 43
7330742 TATATTATAT
* *
7330752 ATATATATATATA-TATATATATATAATGATTAAAGTATATAAAC
1 ATATA-ATATAAAGTATATATATATAATG-TTATAGTATATAAAC
*
7330796 ATATAATATAAAGTATATAAGTATATAAAG-TAT-GTATATAAAC
1 ATATAATATAAAGTATAT-A-TATATAATGTTATAGTATATAAAC
*
7330839 A-ATAA-AGTAAAAGTATATATATATAATGTTTTAGTATA
1 ATATAATA-T-AAAGTATATATATATAATGTTATAGTATA
7330877 AAGTATATAT
Statistics
Matches: 69, Mismatches: 5, Indels: 15
0.78 0.06 0.17
Matches are distributed among these distances:
41 9 0.13
42 8 0.12
43 31 0.45
44 12 0.17
45 1 0.01
46 8 0.12
ACGTcount: A:0.52, C:0.02, G:0.08, T:0.38
Consensus pattern (43 bp):
ATATAATATAAAGTATATATATATAATGTTATAGTATATAAAC
Found at i:7331021 original size:15 final size:15
Alignment explanation
Indices: 7330611--7331422 Score: 161
Period size: 15 Copynumber: 54.7 Consensus size: 15
7330601 AAGACTAACG
7330611 TATATAAGTATATAA
1 TATATAAGTATATAA
*
7330626 TA-AAAAGTATATAA
1 TATATAAGTATATAA
7330640 GTATATAAAGTATATATA
1 -TATAT-AAGTATATA-A
*
7330658 CATATAAAG-A-ATAA
1 TATAT-AAGTATATAA
*
7330672 GTATGT-A-TATATATA
1 -TATATAAGTATATA-A
* *
7330687 TATATAAAGT-TTTAG
1 TATAT-AAGTATATAA
7330702 TATA-AAGTATACATACA
1 TATATAAGTAT--ATA-A
**
7330719 TATATAAAAATA-AA
1 TATATAAGTATATAA
* *
7330733 AAGTATAAGTATATTA
1 TA-TATAAGTATATAA
7330749 TATAT-A-TATATATA
1 TATATAAGTATATA-A
7330763 TATATATA-TATATAA
1 TATATA-AGTATATAA
7330778 TGAT-TAAAGTATATAAA
1 T-ATAT-AAGTATAT-AA
*
7330795 CATATAA-TATA-AA
1 TATATAAGTATATAA
7330808 GTATATAAGTATATAA
1 -TATATAAGTATATAA
7330824 -AGTAT--GTATATAA
1 TA-TATAAGTATATAA
*
7330837 -ACAATAAAGTA-A-AA
1 TA-TAT-AAGTATATAA
7330851 GTATAT-A-TATATAA
1 -TATATAAGTATATAA
* * *
7330865 TGTTTTAGTATA-AA
1 TATATAAGTATATAA
*
7330879 GTATATATACATATATAA
1 -TATATA-A-GTATATAA
*
7330897 TAATATAAAT-TATAA
1 T-ATATAAGTATATAA
7330912 GTAT-T-A-TATATATA
1 -TATATAAGTATATA-A
7330926 TATATATA-TATATATA
1 TATATA-AGTATATA-A
* *
7330942 TATATAAAGCATA-AT
1 TATAT-AAGTATATAA
7330957 TATA-AAG-AT-TAAA
1 TATATAAGTATAT-AA
*
7330970 GTATATAAGCATTATAAAA
1 -TATATAAG---TATATAA
7330989 GTATATAAGTATATAA
1 -TATATAAGTATATAA
7331005 TATATAAGTAT-TGAA
1 TATATAAGTATAT-AA
7331020 TATA-AAGTATATATA
1 TATATAAGTATATA-A
* *
7331035 TATATGCACGTGTATAA
1 TATAT--AAGTATATAA
7331052 TA-AT-A-TATAT-A
1 TATATAAGTATATAA
* *
7331063 TATATAATGT-TTTAG
1 TATATAA-GTATATAA
7331078 TATA-AAGTATAT-A
1 TATATAAGTATATAA
*
7331091 TACATACA-TA-ATAA
1 TATATA-AGTATATAA
7331105 TATA-AA-T-TATAA
1 TATATAAGTATATAA
*
7331117 GTATATTA-TATAT-A
1 -TATATAAGTATATAA
7331131 TATA-AAG-A-ATAA
1 TATATAAGTATATAA
*
7331143 T-TATAAAG-ACTA-ACG
1 TATAT-AAGTA-TATA-A
7331158 TATATAAGTATATAA
1 TATATAAGTATATAA
*
7331173 TATA-AAGTATA-AG
1 TATATAAGTATATAA
*
7331186 TATGTATA-TATATATA
1 TATATA-AGTATATA-A
* *
7331202 TATATAAGT-TTTAG
1 TATATAAGTATATAA
*
7331216 TACA-AAGTATACATACA
1 TATATAAGTAT--ATA-A
**
7331233 TATATAAAAATATAA
1 TATATAAGTATATAA
7331248 -AGTATAAGTATAT--
1 TA-TATAAGTATATAA
7331261 TATAT-A-TATATAA
1 TATATAAGTATATAA
* *
7331274 -AGTATAATTACA-AA
1 TA-TATAAGTATATAA
*
7331288 GACTA-AAGTATATAAA
1 TA-TATAAGTATAT-AA
*
7331304 CATATAA-TATA-AA
1 TATATAAGTATATAA
7331317 GTATATAAGTATATAA
1 -TATATAAGTATATAA
7331333 TATA-AAGTATATAA
1 TATATAAGTATATAA
7331347 GTATATAAAGTATAT-A
1 -TATAT-AAGTATATAA
* *
7331363 TGCATGTAAAGTATA-AG
1 T--ATAT-AAGTATATAA
7331380 TATATATA-TATATATA
1 TATATA-AGTATATA-A
7331396 TATATATA-TATATATA
1 TATATA-AGTATATA-A
*
7331412 TATATATGTAT
1 TATATAAGTAT
7331423 GTATATTGTA
Statistics
Matches: 600, Mismatches: 73, Indels: 247
0.65 0.08 0.27
Matches are distributed among these distances:
11 12 0.02
12 23 0.04
13 78 0.13
14 122 0.20
15 155 0.26
16 113 0.19
17 61 0.10
18 23 0.04
19 13 0.02
ACGTcount: A:0.51, C:0.03, G:0.08, T:0.38
Consensus pattern (15 bp):
TATATAAGTATATAA
Found at i:7331035 original size:28 final size:28
Alignment explanation
Indices: 7330990--7331092 Score: 84
Period size: 28 Copynumber: 3.5 Consensus size: 28
7330980 ATTATAAAAG
7330990 TATATAAGTATATAATATATAAGTATTGAA
1 TATA-AAGTATAT-ATATATAAGTATTGAA
* * * *
7331020 TATAAAGTATATATATATATGCACGTGTA
1 TATAAAGTATATATATATAAGTA-TTGAA
* *
7331049 TAATAATA-TATATATATATAATGT-TTTAG
1 T-ATAA-AGTATATATATATAA-GTATTGAA
7331078 TATAAAGTATATATA
1 TATAAAGTATATATA
7331093 CATACATAAT
Statistics
Matches: 58, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
27 1 0.02
28 21 0.36
29 14 0.24
30 20 0.34
31 2 0.03
ACGTcount: A:0.47, C:0.02, G:0.10, T:0.42
Consensus pattern (28 bp):
TATAAAGTATATATATATAAGTATTGAA
Found at i:7331185 original size:20 final size:20
Alignment explanation
Indices: 7331160--7331354 Score: 74
Period size: 22 Copynumber: 9.7 Consensus size: 20
7331150 GACTAACGTA
7331160 TATAAGTATATAATATAAAG
1 TATAAGTATATAATATAAAG
7331180 TATAAGTATGTATATATATATATA-
1 TATAAGTA--TATA-ATATA-A-AG
* * *
7331204 TATAAGT-TTTAGTACAAAG
1 TATAAGTATATAATATAAAG
*
7331223 TATACA-TACAT-ATAT-AA-
1 TATA-AGTATATAATATAAAG
7331240 -A-AA-TATA-AAGTAT-AAG
1 TATAAGTATATAA-TATAAAG
*
7331256 TAT-ATTATATATATATAAAG
1 TATAAGTATATA-ATATAAAG
* * *
7331276 TATAATTACA-AAGACTAAAG
1 TATAAGTATATAATA-TAAAG
**
7331296 TATATAAACATATAATATAAAG
1 --TATAAGTATATAATATAAAG
7331318 TATATAAGTATATAATATAAAG
1 --TATAAGTATATAATATAAAG
7331340 TATATAAGTATATAA
1 --TATAAGTATATAA
7331355 AGTATATATG
Statistics
Matches: 137, Mismatches: 16, Indels: 42
0.70 0.08 0.22
Matches are distributed among these distances:
14 5 0.04
15 6 0.04
16 1 0.01
17 2 0.01
18 7 0.05
19 14 0.10
20 26 0.19
21 8 0.06
22 51 0.37
23 8 0.06
24 8 0.06
25 1 0.01
ACGTcount: A:0.53, C:0.03, G:0.08, T:0.36
Consensus pattern (20 bp):
TATAAGTATATAATATAAAG
Found at i:7331332 original size:17 final size:17
Alignment explanation
Indices: 7331293--7331385 Score: 78
Period size: 17 Copynumber: 6.0 Consensus size: 17
7331283 ACAAAGACTA
**
7331293 AAGTATATAAACATAT-
1 AAGTATATAAGTATATA
7331309 AA-TATA-AAGTATAT-
1 AAGTATATAAGTATATA
7331323 AAGTATAT-A--ATATA
1 AAGTATATAAGTATATA
7331337 AAGTATATAAGTATATA
1 AAGTATATAAGTATATA
* * *
7331354 AAGTATATATGCATGTA
1 AAGTATATAAGTATATA
7331371 AAG--TATAAGTATATA
1 AAGTATATAAGTATATA
7331386 TATATATATA
Statistics
Matches: 63, Mismatches: 8, Indels: 13
0.75 0.10 0.15
Matches are distributed among these distances:
13 4 0.06
14 16 0.25
15 19 0.30
16 2 0.03
17 22 0.35
ACGTcount: A:0.53, C:0.02, G:0.11, T:0.34
Consensus pattern (17 bp):
AAGTATATAAGTATATA
Found at i:7331344 original size:138 final size:139
Alignment explanation
Indices: 7331046--7331348 Score: 432
Period size: 138 Copynumber: 2.2 Consensus size: 139
7331036 ATATGCACGT
* * *
7331046 GTATAATAATATATATATATATAATGTTTTAGTATAAAGTATATATACATACATAATAATATAAA
1 GTAT-ATAATATA-A-ATATATAA-GTTTTAGTACAAAGTATACATACATACATAAAAATATAAA
* * * **
7331111 TTATAAGTATATTATATATATATAAAGAATAATTATAAAGACTAACGTATATAAGTATATAATAT
62 GTATAAGTATATTATATATATATAAAGAATAATTACAAAGACTAAAGTATATAAACATATAATAT
*
7331176 AAAGTATAAGTAT
127 AAAGTATAAGTAA
* *
7331189 GTATAT-ATATATATATATAAGTTTTAGTACAAAGTATACATACATATATAAAAATATAAAGTAT
1 GTATATAATATAAATATATAAGTTTTAGTACAAAGTATACATACATACATAAAAATATAAAGTAT
*
7331253 AAGTATATTATATATATATAAAGTATAATTACAAAGACTAAAGTATATAAACATATAATATAAAG
66 AAGTATATTATATATATATAAAGAATAATTACAAAGACTAAAGTATATAAACATATAATATAAAG
7331318 TAT-A-TAA
131 TATAAGTAA
7331325 GTATATAATATAAAGTATATAAGT
1 GTATATAATATAAA-TATATAAGT
7331349 ATATAAAGTA
Statistics
Matches: 145, Mismatches: 13, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
136 8 0.06
137 7 0.05
138 111 0.77
139 8 0.06
141 5 0.03
142 2 0.01
143 4 0.03
ACGTcount: A:0.52, C:0.03, G:0.08, T:0.37
Consensus pattern (139 bp):
GTATATAATATAAATATATAAGTTTTAGTACAAAGTATACATACATACATAAAAATATAAAGTAT
AAGTATATTATATATATATAAAGAATAATTACAAAGACTAAAGTATATAAACATATAATATAAAG
TATAAGTAA
Found at i:7331387 original size:2 final size:2
Alignment explanation
Indices: 7331380--7331428 Score: 80
Period size: 2 Copynumber: 24.5 Consensus size: 2
7331370 AAAGTATAAG
*
7331380 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
7331422 TG TA TA T
1 TA TA TA T
7331429 TGTAGACACC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7331460 original size:2 final size:2
Alignment explanation
Indices: 7331453--7331487 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
7331443 TTCATCCATT
7331453 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7331488 GTTTGAAATC
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7331554 original size:35 final size:34
Alignment explanation
Indices: 7331474--7331783 Score: 171
Period size: 36 Copynumber: 8.4 Consensus size: 34
7331464 ATATATATAT
* *
7331474 ATATATATTATATAG--TTTGAAATCATTTTGAAA
1 ATATATAATATATAGTTTTTAAAAT-ATTTTGAAA
*
7331507 ATTATATAATATATGGGTTTATT-AAATATTTTGAAA
1 A-TATATAATATAT-AGTTT-TTAAAATATTTTGAAA
*
7331543 ATATATAATATATAGTTTTTGAAAACATTTTTGAAA
1 ATATATAATATATAGTTTTT-AAAATA-TTTTGAAA
* * * * *
7331579 ATATATATTATATTGTTTTGAAAACTTTTTTTAAAAAATA
1 ATATATAATATATAGTTTTTAAAA--TATTTT---GAA-A
7331619 TATATATAATATATAGTTTTTAAAA-ACGTTTTTGAAAAA
1 -ATATATAATATATAGTTTTTAAAATA---TTTTG--AAA
* *
7331658 CATATATATTATATAGTTTTGAAAATTAGTTTTGAAA
1 -ATATATAATATATAGTTTTTAAAA-TA-TTTTGAAA
* *
7331695 ATATATATATTATATAGTTTTGAAAATTAGTTTTTAAAA
1 ATATATA-A-TATATAGTTTTTAAAA-TA--TTTTGAAA
* *
7331734 ATATATATTATATA-TTTTTGAAAATTATTTTTTAAAA
1 ATATATAATATATAGTTTTT-AAAA-TA--TTTTGAAA
*
7331771 ATATATATTATAT
1 ATATATAATATAT
7331784 GATTTTGAAA
Statistics
Matches: 226, Mismatches: 25, Indels: 48
0.76 0.08 0.16
Matches are distributed among these distances:
33 3 0.01
34 15 0.07
35 21 0.09
36 50 0.22
37 43 0.19
38 21 0.09
39 44 0.19
40 3 0.01
41 26 0.12
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (34 bp):
ATATATAATATATAGTTTTTAAAATATTTTGAAA
Found at i:7331645 original size:77 final size:76
Alignment explanation
Indices: 7331543--7331778 Score: 291
Period size: 77 Copynumber: 3.1 Consensus size: 76
7331533 TATTTTGAAA
*
7331543 ATATATAATATATAGTTTTTGAAAACATTTTTGAAAATATATATTATATTGTTTTGAAAACTT-T
1 ATATATAATATATAGTTTTTAAAAACATTTTTGAAAATATATATTATATTGTTTTGAAAA-TTAT
7331607 TTTTAAAAAATAT
65 TTTT-AAAAATAT
* *
7331620 ATATATAATATATAGTTTTTAAAAACGTTTTTGAAAAACATATATATTATATAGTTTTGAAAATT
1 ATATATAATATATAGTTTTTAAAAACATTTTTG--AAA-ATATATATTATATTGTTTTGAAAATT
* *
7331685 AGTTTTGAAAATAT
63 ATTTTTAAAAATAT
* ** *
7331699 ATATAT--TATATAGTTTTGAAAATTAGTTTTTAAAAATATATATTATATAT-TTTTGAAAATTA
1 ATATATAATATATAGTTTTTAAAAACA-TTTTTGAAAATATATATTATAT-TGTTTTGAAAATTA
7331761 TTTTTTAAAAATAT
64 -TTTTTAAAAATAT
7331775 ATAT
1 ATAT
7331779 TATATGATTT
Statistics
Matches: 139, Mismatches: 13, Indels: 15
0.83 0.08 0.09
Matches are distributed among these distances:
75 25 0.18
76 18 0.13
77 46 0.33
78 5 0.04
79 18 0.13
80 27 0.19
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.48
Consensus pattern (76 bp):
ATATATAATATATAGTTTTTAAAAACATTTTTGAAAATATATATTATATTGTTTTGAAAATTATT
TTTAAAAATAT
Found at i:7331663 original size:39 final size:39
Alignment explanation
Indices: 7331543--7331783 Score: 182
Period size: 39 Copynumber: 6.3 Consensus size: 39
7331533 TATTTTGAAA
* *
7331543 ATATATAATATATAGTTTTTGAAAACATTTTTG-AAAAT
1 ATATATAATATATAGTTTTTAAAAACGTTTTTGAAAAAT
* * * *
7331581 ATATAT--TATATTG-TTTTGAAAACTTTTTTTAAAAAATAT
1 ATATATAATATATAGTTTTTAAAAAC-GTTTTT-GAAAA-AT
*
7331620 ATATATAATATATAGTTTTTAAAAACGTTTTTGAAAAAC
1 ATATATAATATATAGTTTTTAAAAACGTTTTTGAAAAAT
* *
7331659 ATATATATTATATAGTTTTGAAAATTA-G-TTTTG-AAAAT
1 ATATATAATATATAGTTTTTAAAA--ACGTTTTTGAAAAAT
* *
7331697 ATATATATTATATAGTTTTGAAAATTA-GTTTTT-AAAAAT
1 ATATATAATATATAGTTTTTAAAA--ACGTTTTTGAAAAAT
*** *
7331736 ATATAT--TATATA-TTTTTGAAAATTATTTTTTAAAAAT
1 ATATATAATATATAGTTTTT-AAAAACGTTTTTGAAAAAT
*
7331773 ATATATTATAT
1 ATATATAATAT
7331784 GATTTTGAAA
Statistics
Matches: 173, Mismatches: 14, Indels: 31
0.79 0.06 0.14
Matches are distributed among these distances:
35 10 0.06
36 20 0.12
37 22 0.13
38 41 0.24
39 54 0.31
40 5 0.03
41 12 0.07
42 9 0.05
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.48
Consensus pattern (39 bp):
ATATATAATATATAGTTTTTAAAAACGTTTTTGAAAAAT
Found at i:7331663 original size:43 final size:41
Alignment explanation
Indices: 7331543--7331747 Score: 147
Period size: 38 Copynumber: 5.2 Consensus size: 41
7331533 TATTTTGAAA
* *
7331543 ATATATAATATATAGTTTTTGAAAACATTTTTG--AAAATAT
1 ATATATAATATATAG-TTTTAAAAACGTTTTTGAAAAAATAT
* * *
7331583 ATAT-T-ATAT-T-GTTTTGAAAACTTTTTTTAAAAAATAT
1 ATATATAATATATAGTTTTAAAAACGTTTTTGAAAAAATAT
*
7331620 ATATATAATATATAGTTTTTAAAAACGTTTTTG-AAAAACAT
1 ATATATAATATATAG-TTTTAAAAACGTTTTTGAAAAAATAT
7331661 ATATAT--TATATAGTTTTGAAAATTA-G-TTTTG--AAAATAT
1 ATATATAATATATAGTTTT-AAAA--ACGTTTTTGAAAAAATAT
7331699 ATATAT--TATATAGTTTTGAAAATTA-GTTTTT-AAAAATATAT
1 ATATATAATATATAGTTTT-AAAA--ACGTTTTTGAAAAA-ATAT
7331740 ATTATATA
1 A-TATATA
7331748 TTTTTGAAAA
Statistics
Matches: 142, Mismatches: 7, Indels: 29
0.80 0.04 0.16
Matches are distributed among these distances:
35 15 0.11
36 1 0.01
37 12 0.08
38 41 0.29
39 25 0.18
40 9 0.06
41 20 0.14
42 19 0.13
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.47
Consensus pattern (41 bp):
ATATATAATATATAGTTTTAAAAACGTTTTTGAAAAAATAT
Found at i:7331689 original size:13 final size:13
Alignment explanation
Indices: 7331671--7331733 Score: 53
Period size: 13 Copynumber: 4.9 Consensus size: 13
7331661 ATATATTATA
7331671 TAGTTTTGAAAAT
1 TAGTTTTGAAAAT
7331684 TAGTTTTGAAAAT
1 TAGTTTTGAAAAT
*
7331697 ATA-TATATT--ATA-
1 -TAGT-T-TTGAAAAT
7331709 TAGTTTTGAAAAT
1 TAGTTTTGAAAAT
*
7331722 TAGTTTTTAAAA
1 TAGTTTTGAAAA
7331734 ATATATATTA
Statistics
Matches: 40, Mismatches: 3, Indels: 14
0.70 0.05 0.25
Matches are distributed among these distances:
10 2 0.05
11 3 0.08
12 3 0.08
13 27 0.68
14 3 0.08
15 2 0.05
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (13 bp):
TAGTTTTGAAAAT
Found at i:7331834 original size:39 final size:37
Alignment explanation
Indices: 7331570--7331832 Score: 278
Period size: 38 Copynumber: 6.9 Consensus size: 37
7331560 TTTGAAAACA
* *
7331570 TTTTTGAAAATATATATTATATTGTTTTGAAAACTT-T
1 TTTTTAAAAATATATATTATATAGTTTTGAAAA-TTAT
* * ***
7331607 TTTTAAAAAATATATATATAATATATAGTTTTTAAAAACGT
1 TTTT-TAAAA-ATATATAT--TATATAGTTTTGAAAATTAT
* *
7331648 TTTTGAAAAACATATATATTATATAGTTTTGAAAATTAG
1 TTTT-TAAAA-ATATATATTATATAGTTTTGAAAATTAT
* *
7331687 TTTTGAAAATATATATATTATATAGTTTTGAAAATTAG
1 TTTTTAAAA-ATATATATTATATAGTTTTGAAAATTAT
*
7331725 TTTTTAAAAATATATATTATATATTTTTGAAAATTAT
1 TTTTTAAAAATATATATTATATAGTTTTGAAAATTAT
7331762 TTTTTAAAAATATATATTATAT-GATTTTGAAAATTAT
1 TTTTTAAAAATATATATTATATAG-TTTTGAAAATTAT
* * * *
7331799 TATTTTTAAAACATATATTGTATAGTTTTAAAAA
1 T-TTTTAAAAATATATATTATATAGTTTTGAAAA
7331833 ATGATTTTAA
Statistics
Matches: 195, Mismatches: 23, Indels: 15
0.84 0.10 0.06
Matches are distributed among these distances:
37 66 0.34
38 69 0.35
39 28 0.14
41 32 0.16
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.49
Consensus pattern (37 bp):
TTTTTAAAAATATATATTATATAGTTTTGAAAATTAT
Found at i:7331862 original size:4 final size:4
Alignment explanation
Indices: 7331846--7331897 Score: 63
Period size: 4 Copynumber: 13.0 Consensus size: 4
7331836 ATTTTAATTC
*
7331846 ATTT ATCT ATTT ATTT ATTTT ATTT CATTT A-TT ATTT ATTT ATTT A-TT
1 ATTT ATTT ATTT ATTT A-TTT ATTT -ATTT ATTT ATTT ATTT ATTT ATTT
7331894 ATTT
1 ATTT
7331898 TTTGTTTCAG
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
3 6 0.14
4 28 0.67
5 8 0.19
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (4 bp):
ATTT
Found at i:7331887 original size:25 final size:26
Alignment explanation
Indices: 7331836--7331890 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
7331826 TTAAAAAATG
7331836 ATTTTAATTCATTTATCTATTTATTT
1 ATTTTAATTCATTTATCTATTTATTT
*
7331862 ATTTTATTTCATTTAT-TATTTATTT
1 ATTTTAATTCATTTATCTATTTATTT
7331887 ATTT
1 ATTT
7331891 ATTATTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 13 0.46
26 15 0.54
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.69
Consensus pattern (26 bp):
ATTTTAATTCATTTATCTATTTATTT
Found at i:7333368 original size:14 final size:15
Alignment explanation
Indices: 7333349--7333382 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
7333339 TTTCTTTTGA
7333349 TTTTTTTATT-TAAT
1 TTTTTTTATTATAAT
*
7333363 TTTTTTTATTATTAT
1 TTTTTTTATTATAAT
7333378 TTTTT
1 TTTTT
7333383 CTAACATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTTTTATTATAAT
Found at i:7333737 original size:2 final size:2
Alignment explanation
Indices: 7333730--7333830 Score: 88
Period size: 2 Copynumber: 52.0 Consensus size: 2
7333720 AAAGTAAAAG
* *
7333730 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG T- TT
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
7333771 TA GTA TA AA GTA TA TA TA CA TA TA TA -A TA -A TA TA AA T- TA TA
1 TA -TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7333812 -A GTA TA T- TA TA TA TA TA TA
1 TA -TA TA TA TA TA TA TA TA TA
7333831 AACTATAATT
Statistics
Matches: 82, Mismatches: 8, Indels: 18
0.76 0.07 0.17
Matches are distributed among these distances:
1 6 0.07
2 72 0.88
3 4 0.05
ACGTcount: A:0.49, C:0.01, G:0.04, T:0.47
Consensus pattern (2 bp):
TA
Found at i:7333831 original size:26 final size:28
Alignment explanation
Indices: 7333791--7333843 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 28
7333781 TATATATACA
*
7333791 TATATAATAATATAAATTATAAGTATAT
1 TATATAATAATATAAACTATAAGTATAT
*
7333819 TATAT-AT-ATATAAACTATAATTATA
1 TATATAATAATATAAACTATAAGTATA
7333844 AAGACTAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 16 0.70
27 2 0.09
28 5 0.22
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (28 bp):
TATATAATAATATAAACTATAAGTATAT
Found at i:7333883 original size:22 final size:22
Alignment explanation
Indices: 7333858--7333905 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
7333848 CTAAAGTATG
7333858 TAAGAAAATAATATAAAAAATA
1 TAAGAAAATAATATAAAAAATA
* * *
7333880 TAAGTATATAATATAAAATATA
1 TAAGAAAATAATATAAAAAATA
7333902 TAAG
1 TAAG
7333906 TATTGAATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (22 bp):
TAAGAAAATAATATAAAAAATA
Found at i:7333899 original size:20 final size:21
Alignment explanation
Indices: 7333867--7333918 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 21
7333857 GTAAGAAAAT
7333867 AATATAAAAAATATAAGTATAT-
1 AATAT-AAAAATATAAGTAT-TG
7333889 AATATAAAATATATAAGTATTG
1 AATATAAAA-ATATAAGTATTG
7333911 AATATAAA
1 AATATAAA
7333919 GTATATATAC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
21 5 0.18
22 23 0.82
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.33
Consensus pattern (21 bp):
AATATAAAAATATAAGTATTG
Found at i:7333927 original size:2 final size:2
Alignment explanation
Indices: 7333920--7333979 Score: 61
Period size: 2 Copynumber: 31.0 Consensus size: 2
7333910 GAATATAAAG
* * * **
7333920 TA TA TA TA CA TA TA -A TA TT TA TA TA TA TA TA CA CG TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7333961 -A TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA
7333980 ATGTTTTAGT
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
1 2 0.04
2 46 0.96
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (2 bp):
TA
Found at i:7333934 original size:17 final size:16
Alignment explanation
Indices: 7333877--7333977 Score: 59
Period size: 15 Copynumber: 6.3 Consensus size: 16
7333867 AATATAAAAA
*
7333877 ATATAAGTATATA-AT
1 ATATAAATATATATAT
7333892 ATA-AAATATATA-AGT
1 ATATAAATATATATA-T
* *
7333907 AT-TGAATATAAAGTAT
1 ATATAAATATATA-TAT
*
7333923 ATATACATATA-ATAT
1 ATATAAATATATATAT
* * *
7333938 TTATATATATATACACGT
1 ATATAAATATATATA--T
7333956 ATATAATATATATATAT
1 ATATAA-ATATATATAT
7333973 ATATA
1 ATATA
7333978 TAATGTTTTA
Statistics
Matches: 66, Mismatches: 11, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
14 9 0.14
15 25 0.38
16 6 0.09
17 13 0.20
18 5 0.08
19 8 0.12
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (16 bp):
ATATAAATATATATAT
Found at i:7333993 original size:32 final size:32
Alignment explanation
Indices: 7333957--7334044 Score: 81
Period size: 32 Copynumber: 2.8 Consensus size: 32
7333947 TATACACGTA
** **
7333957 TATAATATATATATATATATATAATGTTTTAG
1 TATAATATATATATATATATATAATAATCAAG
* * *
7333989 TATAA-AGCATATATACATATATAATAATCAAT
1 TATAATA-TATATATATATATATAATAATCAAG
7334021 TATAAGTATATAT-TATATATATAA
1 TATAA-TATATATATATATATATAA
7334045 GTAAATTATA
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
31 1 0.02
32 38 0.86
33 4 0.09
34 1 0.02
ACGTcount: A:0.49, C:0.03, G:0.05, T:0.43
Consensus pattern (32 bp):
TATAATATATATATATATATATAATAATCAAG
Found at i:7334157 original size:28 final size:27
Alignment explanation
Indices: 7334038--7334171 Score: 98
Period size: 26 Copynumber: 4.9 Consensus size: 27
7334028 ATATATTATA
* * **
7334038 TATATAAGTAAAT-TATAAAGACGAAG
1 TATATAAGTATATATATAAATATAAAG
*
7334064 TATATAAGCATATAATATAAATATTAATTA-
1 TATATAAGTATAT-ATATAAATA-TAA--AG
*
7334094 TATATAGAGTATATAGTATTAAATATAAAC
1 TATATA-AGTATATA-TA-TAAATATAAAG
*
7334124 TCTATAAGTATATATATAAACTATAAAG
1 TATATAAGTATATATATAAA-TATAAAG
7334152 TATAT-A-TATATATA-AAATAT
1 TATATAAGTATATATATAAATAT
7334172 GAGTACATAT
Statistics
Matches: 89, Mismatches: 9, Indels: 22
0.74 0.08 0.18
Matches are distributed among these distances:
24 3 0.03
25 3 0.03
26 19 0.21
27 5 0.06
28 19 0.21
29 10 0.11
30 12 0.13
31 12 0.13
32 6 0.07
ACGTcount: A:0.52, C:0.04, G:0.07, T:0.37
Consensus pattern (27 bp):
TATATAAGTATATATATAAATATAAAG
Found at i:7334164 original size:24 final size:24
Alignment explanation
Indices: 7334132--7334204 Score: 84
Period size: 24 Copynumber: 3.2 Consensus size: 24
7334122 ACTCTATAAG
7334132 TATATATATAAACTATAAAGTATA
1 TATATATATAAACTATAAAGTATA
* *
7334156 TATATATATAAAATAT-GAG--TA
1 TATATATATAAACTATAAAGTATA
*
7334177 CATAT-T-TAAACTATAAAGTATA
1 TATATATATAAACTATAAAGTATA
7334199 TATATA
1 TATATA
7334205 CACTTTATAT
Statistics
Matches: 39, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
19 7 0.18
20 3 0.08
21 6 0.15
22 6 0.15
23 2 0.05
24 15 0.38
ACGTcount: A:0.52, C:0.04, G:0.05, T:0.38
Consensus pattern (24 bp):
TATATATATAAACTATAAAGTATA
Found at i:7334350 original size:39 final size:41
Alignment explanation
Indices: 7334272--7334354 Score: 100
Period size: 41 Copynumber: 2.0 Consensus size: 41
7334262 ACTTATAATT
*
7334272 TTATATTATTATATGTATATATACTTTATACTAAATTTATATA
1 TTATATTATTATATATATATATACTTTATACT--ATTTATATA
*
7334315 TTATA-TA-TATATATATATATAACTTTATAGT-TTTATATA
1 TTATATTATTATATATATATAT-ACTTTATACTATTTATATA
7334354 T
1 T
7334355 ACATATACTT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
39 9 0.24
41 12 0.32
42 11 0.30
43 5 0.14
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.54
Consensus pattern (41 bp):
TTATATTATTATATATATATATACTTTATACTATTTATATA
Found at i:7334355 original size:2 final size:2
Alignment explanation
Indices: 7334273--7334335 Score: 51
Period size: 2 Copynumber: 32.0 Consensus size: 2
7334263 CTTATAATTT
* * * *
7334273 TA TA T- TA T- TA TA TG TA TA TA TA CTT TA TA CTA AA TT TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA TA
7334315 T- TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA
7334336 ACTTTATAGT
Statistics
Matches: 48, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
1 3 0.06
2 42 0.88
3 3 0.06
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7334372 original size:6 final size:6
Alignment explanation
Indices: 7334306--7334497 Score: 50
Period size: 6 Copynumber: 29.5 Consensus size: 6
7334296 TTTATACTAA
* * * *
7334306 ATTTAT ATATTAT ATATAT ATATAT ATATA- ACTTTAT AGTTT-T ATATAT
1 ATTTAT AT-TTAT ATTTAT ATTTAT ATTTAT A-TTTAT A-TTTAT ATTTAT
** * *
7334355 ACATAT ACTTTAT ATTTAAT ACTTGTAT ACTTAT ATTTAAT GCTTATAT
1 ATTTAT A-TTTAT ATTT-AT A-TT-TAT ATTTAT ATTT-AT -ATT-TAT
* *
7334404 ACTTTAT ATTATAT ACTTATAT ATTTAT -TTATAT ACTTAT CTTTAGT
1 A-TTTAT ATT-TAT A-TT-TAT ATTTAT ATT-TAT ATTTAT ATTTA-T
* * * * *
7334451 CTTTAT ATTT-T ACTTTTT ATATAT ATAATAT ACTTAT ACTTTAT ATT
1 ATTTAT ATTTAT A-TTTAT ATTTAT AT-TTAT ATTTAT A-TTTAT ATT
7334498 ATTATATATG
Statistics
Matches: 145, Mismatches: 20, Indels: 42
0.70 0.10 0.20
Matches are distributed among these distances:
5 7 0.05
6 69 0.48
7 49 0.34
8 18 0.12
9 2 0.01
ACGTcount: A:0.35, C:0.07, G:0.02, T:0.56
Consensus pattern (6 bp):
ATTTAT
Found at i:7334386 original size:22 final size:22
Alignment explanation
Indices: 7334357--7334443 Score: 103
Period size: 21 Copynumber: 4.1 Consensus size: 22
7334347 TTATATATAC
7334357 ATATACTTTATATTTAATACTT
1 ATATACTTTATATTTAATACTT
* *
7334379 GTATAC-TTATATTTAATGCTT
1 ATATACTTTATATTTAATACTT
7334400 ATATACTTTATA-TTATATACTT
1 ATATACTTTATATTTA-ATACTT
7334422 ATATA--TT-TATTTATATACTT
1 ATATACTTTATATTTA-ATACTT
7334442 AT
1 AT
7334444 CTTTAGTCTT
Statistics
Matches: 58, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
19 2 0.03
20 14 0.24
21 22 0.38
22 20 0.34
ACGTcount: A:0.34, C:0.08, G:0.02, T:0.55
Consensus pattern (22 bp):
ATATACTTTATATTTAATACTT
Found at i:7334390 original size:21 final size:21
Alignment explanation
Indices: 7334289--7334443 Score: 114
Period size: 20 Copynumber: 7.5 Consensus size: 21
7334279 ATTATATGTA
**
7334289 TATATACTT-TATACTAAATT
1 TATATACTTATATACTTTATT
*
7334309 TATATA-TTATATA-TATATATA
1 TATATACTTATATACT-T-TATT
* *
7334330 TATATAACTT-TATAGTTT-TA
1 TATAT-ACTTATATACTTTATT
7334350 TATATAC--ATATACTTTATAT
1 TATATACTTATATACTTTAT-T
*
7334370 T-TAATACTTGTATACTTATATT
1 TAT-ATACTTATATACTT-TATT
*
7334392 TA-ATGCTTATATACTTTATAT
1 TATATACTTATATACTTTAT-T
7334413 TATATACTTATATA-TTTATT
1 TATATACTTATATACTTTATT
7334433 TATATACTTAT
1 TATATACTTAT
7334444 CTTTAGTCTT
Statistics
Matches: 110, Mismatches: 9, Indels: 32
0.73 0.06 0.21
Matches are distributed among these distances:
18 7 0.06
19 7 0.06
20 37 0.34
21 28 0.25
22 25 0.23
23 6 0.05
ACGTcount: A:0.37, C:0.07, G:0.02, T:0.54
Consensus pattern (21 bp):
TATATACTTATATACTTTATT
Found at i:7334404 original size:43 final size:42
Alignment explanation
Indices: 7334358--7334443 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 42
7334348 TATATATACA
* *
7334358 TATACTTTATATT-TAATACTTGTATACTTATATTTA-ATGCTTA
1 TATACTTTATATTAT-ATACTTATATA-TT-TATTTATATACTTA
7334401 TATACTTTATATTATATACTTATATATTTATTTATATACTTA
1 TATACTTTATATTATATACTTATATATTTATTTATATACTTA
7334443 T
1 T
7334444 CTTTAGTCTT
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
41 6 0.15
42 9 0.23
43 23 0.59
44 1 0.03
ACGTcount: A:0.34, C:0.08, G:0.02, T:0.56
Consensus pattern (42 bp):
TATACTTTATATTATATACTTATATATTTATTTATATACTTA
Found at i:7334425 original size:8 final size:8
Alignment explanation
Indices: 7334357--7334443 Score: 70
Period size: 8 Copynumber: 12.2 Consensus size: 8
7334347 TTATATATAC
7334357 ATATACTT
1 ATATACTT
*
7334365 -TATATTT
1 ATATACTT
7334372 A-ATACTT
1 ATATACTT
*
7334379 GTATACTT
1 ATATACTT
7334387 ATAT--TT
1 ATATACTT
*
7334393 A-ATGCTT
1 ATATACTT
7334400 ATATACTT
1 ATATACTT
7334408 -TATA-TT
1 ATATACTT
7334414 ATATACTT
1 ATATACTT
7334422 ATATA-TT
1 ATATACTT
7334429 -TAT--TT
1 ATATACTT
7334434 ATATACTT
1 ATATACTT
7334442 AT
1 AT
7334444 CTTTAGTCTT
Statistics
Matches: 64, Mismatches: 5, Indels: 20
0.72 0.06 0.22
Matches are distributed among these distances:
5 4 0.06
6 11 0.17
7 24 0.38
8 25 0.39
ACGTcount: A:0.34, C:0.08, G:0.02, T:0.55
Consensus pattern (8 bp):
ATATACTT
Found at i:7334600 original size:40 final size:40
Alignment explanation
Indices: 7334533--7334646 Score: 105
Period size: 40 Copynumber: 2.9 Consensus size: 40
7334523 ACTAAAACTT
* *
7334533 TATATATATATATATAAAGTTTTAGTATAAAGTATATATGCA
1 TATATAT-TA-ATATAAAGTATAAGTATAAAGTATATATGCA
* * *
7334575 TATATATTAATATAAAGTATAAGTATTAA-TATA-AAGTA
1 TATATATTAATATAAAGTATAAGTATAAAGTATATATGCA
*
7334613 TATA-AGT-AT-TAAA-TATAAGTATATAAGTATATAT
1 TATATATTAATATAAAGTATAAGTATA-AAGTATATAT
7334647 ATAAACTATA
Statistics
Matches: 61, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
34 9 0.15
35 6 0.10
36 6 0.10
37 3 0.05
38 7 0.11
39 4 0.07
40 17 0.28
41 2 0.03
42 7 0.11
ACGTcount: A:0.49, C:0.01, G:0.09, T:0.41
Consensus pattern (40 bp):
TATATATTAATATAAAGTATAAGTATAAAGTATATATGCA
Found at i:7334618 original size:21 final size:21
Alignment explanation
Indices: 7334579--7334660 Score: 102
Period size: 21 Copynumber: 4.0 Consensus size: 21
7334569 TATGCATATA
7334579 TATTAATATAAAG--TATAAG
1 TATTAATATAAAGTATATAAG
7334598 TATTAATATAAAGTATATAAG
1 TATTAATATAAAGTATATAAG
7334619 TATTAA-ATATAAGTATATAAG
1 TATTAATATA-AAGTATATAAG
*
7334640 TA-TATATATAAACTATA-AAG
1 TATTA-ATATAAAGTATATAAG
7334660 T
1 T
7334661 GGGTGTGTAT
Statistics
Matches: 57, Mismatches: 1, Indels: 9
0.85 0.01 0.13
Matches are distributed among these distances:
19 13 0.23
20 9 0.16
21 32 0.56
22 3 0.05
ACGTcount: A:0.52, C:0.01, G:0.09, T:0.38
Consensus pattern (21 bp):
TATTAATATAAAGTATATAAG
Found at i:7334621 original size:8 final size:8
Alignment explanation
Indices: 7334592--7334645 Score: 66
Period size: 8 Copynumber: 7.5 Consensus size: 8
7334582 TAATATAAAG
7334592 TATAAGTA
1 TATAAGTA
7334600 T-TAA-TA
1 TATAAGTA
7334606 TA-AAGTA
1 TATAAGTA
7334613 TATAAGTA
1 TATAAGTA
7334621 T-TAA--A
1 TATAAGTA
7334626 TATAAGTA
1 TATAAGTA
7334634 TATAAGTA
1 TATAAGTA
7334642 TATA
1 TATA
7334646 TATAAACTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
5 2 0.05
6 8 0.20
7 10 0.25
8 20 0.50
ACGTcount: A:0.52, C:0.00, G:0.09, T:0.39
Consensus pattern (8 bp):
TATAAGTA
Found at i:7334724 original size:26 final size:26
Alignment explanation
Indices: 7334695--7334762 Score: 93
Period size: 26 Copynumber: 2.6 Consensus size: 26
7334685 ACACTTTAAA
7334695 ATATATATACCTTATAGATTACA-TAT
1 ATATATATA-CTTATAGATTACACTAT
* *
7334721 ATATTATATACTTATAGTTTACACTTT
1 ATA-TATATACTTATAGATTACACTAT
7334748 ATATATATACTTATA
1 ATATATATACTTATA
7334763 CTTTTTTATA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
26 27 0.71
27 11 0.29
ACGTcount: A:0.40, C:0.10, G:0.03, T:0.47
Consensus pattern (26 bp):
ATATATATACTTATAGATTACACTAT
Found at i:7335281 original size:24 final size:24
Alignment explanation
Indices: 7335251--7335296 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
7335241 TTTAGTCCAT
*
7335251 TTTTAT-ATTAATATCAGTTTCACA
1 TTTTATAATTAAT-TCAATTTCACA
7335275 TTTTATAATTAATTCAATTTCA
1 TTTTATAATTAATTCAATTTCA
7335297 TCTCTCATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.35, C:0.11, G:0.02, T:0.52
Consensus pattern (24 bp):
TTTTATAATTAATTCAATTTCACA
Found at i:7335404 original size:22 final size:21
Alignment explanation
Indices: 7335379--7335509 Score: 97
Period size: 22 Copynumber: 6.0 Consensus size: 21
7335369 CTTTATATAC
7335379 ATATATA-AAGTATAAAGTAT
1 ATATATATAAGTATAAAGTAT
*
7335399 ATATATATAAAGTAATAAAGTGT
1 ATATATAT-AAGT-ATAAAGTAT
* **
7335422 TTGGATATAAGTATTAAAGTAT
1 ATATATATAAGTA-TAAAGTAT
*
7335444 ATAAATATAAGTATTAAA-TAT
1 ATATATATAAGTA-TAAAGTAT
* *
7335465 AAAGTATATAAGTACATAAGTACT
1 ATA-TATATAAGTATA-AAGTA-T
*
7335489 AAAGTATATAA-TATAAAGTAT
1 ATA-TATATAAGTATAAAGTAT
7335510 TAAACCATAT
Statistics
Matches: 91, Mismatches: 12, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
20 7 0.08
21 8 0.09
22 46 0.51
23 18 0.20
24 12 0.13
ACGTcount: A:0.52, C:0.02, G:0.11, T:0.35
Consensus pattern (21 bp):
ATATATATAAGTATAAAGTAT
Found at i:7335463 original size:13 final size:15
Alignment explanation
Indices: 7335380--7335475 Score: 83
Period size: 15 Copynumber: 6.5 Consensus size: 15
7335370 TTTATATACA
7335380 TATATAAAGTATAAAG
1 TATATAAA-TATAAAG
*
7335396 TATATATATATAAAG
1 TATATAAATATAAAG
* **
7335411 TA-ATAAAGTGT-TTG
1 TATATAAA-TATAAAG
* *
7335425 GATATAAGTATTAAAG
1 TATATAAATA-TAAAG
7335441 TATATAAATAT-AAG
1 TATATAAATATAAAG
7335455 TAT-TAAATATAAAG
1 TATATAAATATAAAG
7335469 TATATAA
1 TATATAA
7335476 GTACATAAGT
Statistics
Matches: 62, Mismatches: 12, Indels: 13
0.71 0.14 0.15
Matches are distributed among these distances:
13 7 0.11
14 19 0.31
15 20 0.32
16 16 0.26
ACGTcount: A:0.52, C:0.00, G:0.11, T:0.36
Consensus pattern (15 bp):
TATATAAATATAAAG
Found at i:7335472 original size:73 final size:73
Alignment explanation
Indices: 7335384--7335540 Score: 194
Period size: 73 Copynumber: 2.1 Consensus size: 73
7335374 TATACATATA
* * * * **
7335384 TAAAGTATAAAGTATAT-A-TATATAAAGTAATAAAGTGTTTGGATAT-AAGTATTAAAGTATAT
1 TAAA-TATAAAGTATATAAGTACAT-AAGTAATAAAGTATAT-AATATAAAGTATTAAACCATAT
7335446 AAATATAAGTAT
63 -AATATAAGTAT
*
7335458 TAAATATAAAGTATATAAGTACATAAGTACTAAAGTATATAATATAAAGTATTAAACCATATAAT
1 TAAATATAAAGTATATAAGTACATAAGTAATAAAGTATATAATATAAAGTATTAAACCATATAAT
7335523 ATAAGTAT
66 ATAAGTAT
7335531 TAAATATAAA
1 TAAATATAAA
7335541 TTCGTATGCG
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
73 37 0.51
74 32 0.44
75 4 0.05
ACGTcount: A:0.53, C:0.03, G:0.10, T:0.34
Consensus pattern (73 bp):
TAAATATAAAGTATATAAGTACATAAGTAATAAAGTATATAATATAAAGTATTAAACCATATAAT
ATAAGTAT
Found at i:7335513 original size:8 final size:7
Alignment explanation
Indices: 7335382--7335509 Score: 68
Period size: 8 Copynumber: 17.4 Consensus size: 7
7335372 TATATACATA
7335382 TATAAAG
1 TATAAAG
7335389 TATAAAG
1 TATAAAG
7335396 TATATATA-
1 TATA-A-AG
7335404 TATAAAG
1 TATAAAG
7335411 TAATAAAG
1 T-ATAAAG
* **
7335419 TGT-TTG
1 TATAAAG
*
7335425 GATATAAG
1 TATA-AAG
7335433 TATTAAAG
1 TA-TAAAG
*
7335441 TATATAAA
1 TATA-AAG
7335449 TAT-AAG
1 TATAAAG
7335455 TATTAAA-
1 TA-TAAAG
7335462 TATAAAG
1 TATAAAG
7335469 TATATAAG
1 TATA-AAG
*
7335477 TACATAAG
1 TATA-AAG
7335485 TACTAAAG
1 TA-TAAAG
7335493 TATATAA-
1 TATA-AAG
7335500 TATAAAG
1 TATAAAG
7335507 TAT
1 TAT
7335510 TAAACCATAT
Statistics
Matches: 94, Mismatches: 12, Indels: 30
0.69 0.09 0.22
Matches are distributed among these distances:
6 13 0.14
7 32 0.34
8 45 0.48
9 4 0.04
ACGTcount: A:0.52, C:0.02, G:0.12, T:0.35
Consensus pattern (7 bp):
TATAAAG
Done.