Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008747.1 Hibiscus syriacus cultivar Beakdansim tig00111837_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12616935
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 29 of 51
Found at i:7547681 original size:42 final size:42
Alignment explanation
Indices: 7547597--7547684 Score: 117
Period size: 42 Copynumber: 2.1 Consensus size: 42
7547587 CAGTACACTA
*
7547597 ATATAAACTATTGTTTATAAACTATACGTTTATAGGTTATAT
1 ATATAAACTATTGTTTATAAACTATACGGTTATAGGTTATAT
* * * *
7547639 ATATTAACTATTGTTTATAGACTATA-GGTTA-ATGTTACAT
1 ATATAAACTATTGTTTATAAACTATACGGTTATAGGTTATAT
7547679 ATATAA
1 ATATAA
7547685 TTTATATAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
40 12 0.30
41 4 0.10
42 24 0.60
ACGTcount: A:0.39, C:0.07, G:0.10, T:0.44
Consensus pattern (42 bp):
ATATAAACTATTGTTTATAAACTATACGGTTATAGGTTATAT
Found at i:7547785 original size:28 final size:28
Alignment explanation
Indices: 7547749--7547807 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
7547739 ACATATATAT
7547749 TTTAGGGTTT-AGTGTTTATGGTTTAAAG
1 TTTAGGGTTTAAGT-TTTATGGTTTAAAG
* *
7547777 TTTATGGTTTAAGTTTTATGGTTTAAGG
1 TTTAGGGTTTAAGTTTTATGGTTTAAAG
7547805 TTT
1 TTT
7547808 CTATAAACTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 25 0.89
29 3 0.11
ACGTcount: A:0.20, C:0.00, G:0.25, T:0.54
Consensus pattern (28 bp):
TTTAGGGTTTAAGTTTTATGGTTTAAAG
Found at i:7547802 original size:14 final size:14
Alignment explanation
Indices: 7547748--7547803 Score: 71
Period size: 14 Copynumber: 4.0 Consensus size: 14
7547738 TACATATATA
*
7547748 TTTTAGGGTTT-AG
1 TTTTATGGTTTAAG
7547761 TGTTTATGGTTTAAAG
1 T-TTTATGGTTT-AAG
7547777 -TTTATGGTTTAAG
1 TTTTATGGTTTAAG
7547790 TTTTATGGTTTAAG
1 TTTTATGGTTTAAG
7547804 GTTTCTATAA
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
13 4 0.11
14 32 0.84
16 2 0.05
ACGTcount: A:0.21, C:0.00, G:0.25, T:0.54
Consensus pattern (14 bp):
TTTTATGGTTTAAG
Found at i:7548201 original size:2 final size:2
Alignment explanation
Indices: 7548196--7548251 Score: 67
Period size: 2 Copynumber: 27.5 Consensus size: 2
7548186 TAGTTTACAC
* * * *
7548196 AT AT AT AGT TT AT AT AC AT AC AT TT AT AT AT AT AT AT AT AT AT
1 AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7548239 AT AT AT AT AT AT A
1 AT AT AT AT AT AT A
7548252 GAAAATTATA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
2 44 0.98
3 1 0.02
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7548627 original size:2 final size:2
Alignment explanation
Indices: 7548620--7548835 Score: 60
Period size: 2 Copynumber: 108.0 Consensus size: 2
7548610 ACTTTGAATA
*
7548620 AT AT AT AT AT AT AT AT -T AT AT AT AT AT AT AT AA AT -T AT AGT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T
* * * * * * * *
7548661 TT AT AA ACT AT AT ACT TT TT AT AGT TT AT AC AT AT AT AGT TT AC
1 AT AT AT A-T AT AT A-T AT AT AT A-T AT AT AT AT AT AT A-T AT AT
* * * *
7548705 AT AT AT AGT TT AT AT AT AT AGT -T CAT AT AA AC AT A- AT TT AT
1 AT AT AT A-T AT AT AT AT AT A-T AT -AT AT AT AT AT AT AT AT AT
* * * *
7548746 AT AT AT AG CT -T AT A- AT A- AT -T AT AT AGT GT AT A- AT AT AA
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT
* * *
7548784 AT AT AGT TT AT AT AT AT AGT TT AT AT AT AA ACT -T AT AT -T AT
1 AT AT A-T AT AT AT AT AT A-T AT AT AT AT AT A-T AT AT AT AT AT
7548825 AT AT AT -T AT AT
1 AT AT AT AT AT AT
7548836 TTTTTTTCAA
Statistics
Matches: 154, Mismatches: 36, Indels: 48
0.65 0.15 0.20
Matches are distributed among these distances:
1 12 0.08
2 131 0.85
3 11 0.07
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7548641 original size:13 final size:14
Alignment explanation
Indices: 7548623--7548835 Score: 114
Period size: 13 Copynumber: 15.4 Consensus size: 14
7548613 TTGAATAATA
7548623 TATATATATATA-T
1 TATATATATATAGT
7548636 TATATATATATA--
1 TATATATATATAGT
*
7548648 TATAAAT-TATAGT
1 TATATATATATAGT
7548661 T-TATA-A-ACTA--
1 TATATATATA-TAGT
* *
7548671 TATACTTTTTATAGTT
1 TATA-TATATATAG-T
*
7548687 TATACATATATAGT
1 TATATATATATAGT
*
7548701 T-TACATATATAGT
1 TATATATATATAGT
7548714 T-TATATATATAGT
1 TATATATATATAGT
* * *
7548727 TCATATAAACATAAT
1 T-ATATATATATAGT
7548742 T-TATATATATAGCT
1 TATATATATATAG-T
7548756 TATAATAATTATATAGT
1 TAT-AT-A-TATATAGT
7548773 GTATAATATAAATATAGT
1 -TAT-ATAT--ATATAGT
7548791 T-TATATATATAGT
1 TATATATATATAGT
* *
7548804 T-TATATATAAACT
1 TATATATATATAGT
7548817 TATATTATATATA-T
1 TATA-TATATATAGT
7548831 TATAT
1 TATAT
7548836 TTTTTTTCAA
Statistics
Matches: 160, Mismatches: 17, Indels: 46
0.72 0.08 0.21
Matches are distributed among these distances:
10 1 0.01
11 7 0.04
12 12 0.08
13 68 0.43
14 12 0.08
15 28 0.17
16 8 0.05
17 4 0.03
18 20 0.12
ACGTcount: A:0.43, C:0.04, G:0.05, T:0.48
Consensus pattern (14 bp):
TATATATATATAGT
Found at i:7548644 original size:19 final size:19
Alignment explanation
Indices: 7548620--7548658 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
7548610 ACTTTGAATA
*
7548620 ATATATATATATATATTAT
1 ATATATATATATAAATTAT
7548639 ATATATATATATAAATTAT
1 ATATATATATATAAATTAT
7548658 A
1 A
7548659 GTTTATAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATATATATATATAAATTAT
Found at i:7548814 original size:30 final size:31
Alignment explanation
Indices: 7548765--7548830 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
7548755 TTATAATAAT
7548765 TATATAGTGTATAATATAAA--TATAGTTTATA
1 TATATAGTGTATAATATAAACTTATA--TTATA
*
7548796 TATATAGTTTAT-ATATAAACTTATATTATA
1 TATATAGTGTATAATATAAACTTATATTATA
7548826 TATAT
1 TATAT
7548831 TATATTTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
30 17 0.53
31 11 0.34
32 4 0.12
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (31 bp):
TATATAGTGTATAATATAAACTTATATTATA
Found at i:7552560 original size:25 final size:25
Alignment explanation
Indices: 7552531--7552594 Score: 92
Period size: 25 Copynumber: 2.6 Consensus size: 25
7552521 TAAGAAAAGT
7552531 AAGTTCTTCACATTCTAAAAATCAA
1 AAGTTCTTCACATTCTAAAAATCAA
* * *
7552556 AAGTTTTTCAAATTCTAAAAGTCAA
1 AAGTTCTTCACATTCTAAAAATCAA
*
7552581 AAGTTCTTCTCATT
1 AAGTTCTTCACATT
7552595 ATACCTTGTC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.39, C:0.17, G:0.06, T:0.38
Consensus pattern (25 bp):
AAGTTCTTCACATTCTAAAAATCAA
Found at i:7559412 original size:60 final size:60
Alignment explanation
Indices: 7559334--7559461 Score: 229
Period size: 60 Copynumber: 2.1 Consensus size: 60
7559324 TTATCTTGTA
*
7559334 TTTTGATTTGACTAGACTTTGAGTTTTATTTTAATGTACACCTTTTTTTCTCTCAAATGAC
1 TTTT-ATTTGACTAGACTTTGAGTTTTATTTTAATGTAAACCTTTTTTTCTCTCAAATGAC
7559395 TTTTATTTGACTAGACTTTGAGTTTTATTTTAATGTAAACCTTTTTTTCTCTCAAATGAC
1 TTTTATTTGACTAGACTTTGAGTTTTATTTTAATGTAAACCTTTTTTTCTCTCAAATGAC
*
7559455 TTCTATT
1 TTTTATT
7559462 ATAAATGGAG
Statistics
Matches: 65, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
60 61 0.94
61 4 0.06
ACGTcount: A:0.23, C:0.14, G:0.10, T:0.52
Consensus pattern (60 bp):
TTTTATTTGACTAGACTTTGAGTTTTATTTTAATGTAAACCTTTTTTTCTCTCAAATGAC
Found at i:7560671 original size:22 final size:22
Alignment explanation
Indices: 7560646--7560703 Score: 107
Period size: 22 Copynumber: 2.6 Consensus size: 22
7560636 AAATTTAAAT
*
7560646 TTCAGGGTGGGCACAATAAAGC
1 TTCAAGGTGGGCACAATAAAGC
7560668 TTCAAGGTGGGCACAATAAAGC
1 TTCAAGGTGGGCACAATAAAGC
7560690 TTCAAGGTGGGCAC
1 TTCAAGGTGGGCAC
7560704 CATCAATAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.31, C:0.19, G:0.31, T:0.19
Consensus pattern (22 bp):
TTCAAGGTGGGCACAATAAAGC
Found at i:7561348 original size:13 final size:13
Alignment explanation
Indices: 7561330--7561358 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
7561320 TTTTTGTTAT
7561330 ATAAAAAAAATTC
1 ATAAAAAAAATTC
7561343 AT-AAAAAAATTC
1 ATAAAAAAAATTC
7561355 ATAA
1 ATAA
7561359 TGCTAGTACT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
12 12 0.80
13 3 0.20
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (13 bp):
ATAAAAAAAATTC
Found at i:7561350 original size:12 final size:12
Alignment explanation
Indices: 7561333--7561358 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7561323 TTGTTATATA
7561333 AAAAAAATTCAT
1 AAAAAAATTCAT
7561345 AAAAAAATTCAT
1 AAAAAAATTCAT
7561357 AA
1 AA
7561359 TGCTAGTACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.23
Consensus pattern (12 bp):
AAAAAAATTCAT
Found at i:7563140 original size:15 final size:14
Alignment explanation
Indices: 7563120--7563153 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
7563110 TATTGTTATT
7563120 TATTTATTTATTTAA
1 TATTTATTT-TTTAA
7563135 TATTTATTTTTTAA
1 TATTTATTTTTTAA
7563149 -ATTTA
1 TATTTA
7563154 ACATTTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.26
14 5 0.26
15 9 0.47
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TATTTATTTTTTAA
Found at i:7563241 original size:12 final size:12
Alignment explanation
Indices: 7563224--7563259 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
7563214 TTTTAAATTT
7563224 TAATTTTAACTA
1 TAATTTTAACTA
*
7563236 TAATTTTAATTA
1 TAATTTTAACTA
*
7563248 TAATTTTCACTA
1 TAATTTTAACTA
7563260 ATTAAGACAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.39, C:0.08, G:0.00, T:0.53
Consensus pattern (12 bp):
TAATTTTAACTA
Found at i:7568212 original size:164 final size:164
Alignment explanation
Indices: 7567936--7568909 Score: 892
Period size: 164 Copynumber: 5.9 Consensus size: 164
7567926 TAAAGAAACT
* * * * *
7567936 ATTTACAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAACACCTTCGAGTTCAATTACACTCA
1 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCAGCCAAAGACCTTCGAGTTCGACTACACTCA
* * *
7568001 GCTTCGAGGGCATATCATTTGTAGCATAACATAAGTCAAGAAGGGTTATCTGCCAACAAAGACCT
66 GCTTCAAGGGCACATCATTTGTAGCATAACTTAAGTCAAGAAGGGTTATCTGCCAACAAAGACCT
**
7568066 TTAAGTTCGACTACGCTCAGCTCCAAGGCACATC
131 TCGAGTTCGACTACGCTCAGCTCCAAGGCACATC
*
7568100 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCAGCCAAAGACCTTCGAGTTCGATTACACTCA
1 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCAGCCAAAGACCTTCGAGTTCGACTACACTCA
* *
7568165 GCTTCAAGGGTACATCATTTGTAGCATAACTTAAGTCAATAAGGGTTATCTGCCAACAAAGACCT
66 GCTTCAAGGGCACATCATTTGTAGCATAACTTAAGTCAAGAAGGGTTATCTGCCAACAAAGACCT
*
7568230 TCGAGTTCGACTACGCTCAGCTCCAAGGCATATC
131 TCGAGTTCGACTACGCTCAGCTCCAAGGCACATC
* * * * * ** * * * * *
7568264 ATTTGCAACATAGCTTAAGTCGAGAAGAGTTATCTGCCAAATACCCCCGAGTTTGATTATATTAA
1 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCAGCCAAAGACCTTCGAGTTCGACTACACTCA
* * * * * *
7568329 GCTTC-GGAGGCATATCATTTGCAGCACAACTTAAGTCTAGAAGGGTTGTCTGCCAACAAAAGAC
66 GCTTCAAG-GGCACATCATTTGTAGCATAACTTAAGTCAAGAAGGGTTATCTGCCAAC-AAAGAC
* * * * *
7568393 CTTTGAGTTCGAGTACGCTCAACTCAAAGGCATATC
129 CTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATC
* * *** * * * *
7568429 ATTCGCAGCATAGCTTAAGTCGAGAAGGGATATTTTCCAAAG-CCCTCAAGTTTGACTACGCTCA
1 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCAGCCAAAGACCTTCGAGTTCGACTACACTCA
* * ** * * * * * *
7568493 GCTTCGAGGGCACATCTTTTACAGCATAACTCAAGGCTAGAA-GGTTATCCGTCACCAAAAGACC
66 GCTTCAAGGGCACATCATTTGTAGCATAACTTAAGTCAAGAAGGGTTATCTGCCAAC-AAAGACC
* * * *
7568557 TTCGAGTTTGACTACGCTCAGCTTCGAGGGCACATA
130 TTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATC
* * * * * * * * * *
7568593 ATTTACAACATAACTTAAGTCAAGAAAGGTTATCTACCAACCAAAGACCTTTGAGTTCAACTACG
1 ATTTGCAGCATAGCTTAAGTCGAG-AAGG---GCTATCAGCCAAAGACCTTCGAGTTCGACTACA
* * * * *
7568658 CTCAGCTCCAA-GGCACATCATTTGTAGTATAGCTTAAGTCGAGAAGGGCTATCTG-C--CAAAG
62 CTCAGCTTCAAGGGCACATCATTTGTAGCATAACTTAAGTCAAGAAGGGTTATCTGCCAACAAAG
* * * *
7568719 A-CTCTCGAGTTCGATTACACTCAGCTTCGAGAGCACATC
127 ACCT-TCGAGTTCGACTACGCTCAGCTCCAAG-GCACATC
* * * * * * *
7568758 ATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAATACCTTTGAGTTTGACTACG
1 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTA--T--CAGCCAAAGACCTTCGAGTTCGACTACA
* * * * *
7568823 CTCAGCTCCAA-GGAACATCATTTGTAGTATAGCTTAAGTCAAGAAGGGCTATCTG-C--CAAAG
62 CTCAGCTTCAAGGGCACATCATTTGTAGCATAACTTAAGTCAAGAAGGGTTATCTGCCAACAAAG
* * *
7568884 ACCCTCGAGTTCGATTACACTCAGCT
127 ACCTTCGAGTTCGACTACGCTCAGCT
7568910 TCGAGGGCAT
Statistics
Matches: 677, Mismatches: 116, Indels: 33
0.82 0.14 0.04
Matches are distributed among these distances:
161 2 0.00
163 37 0.05
164 337 0.50
165 235 0.35
166 2 0.00
168 35 0.05
169 29 0.04
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.26
Consensus pattern (164 bp):
ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCAGCCAAAGACCTTCGAGTTCGACTACACTCA
GCTTCAAGGGCACATCATTTGTAGCATAACTTAAGTCAAGAAGGGTTATCTGCCAACAAAGACCT
TCGAGTTCGACTACGCTCAGCTCCAAGGCACATC
Found at i:7568573 original size:84 final size:85
Alignment explanation
Indices: 7567936--7569035 Score: 710
Period size: 84 Copynumber: 13.3 Consensus size: 85
7567926 TAAAGAAACT
* * * * * * * *
7567936 ATTTACAGCATAGCTTAAGTCGAGAAGGGCTATCTG----CCAAACACCTTCGAGTTCAATTACA
1 ATTTACAGCATAACTTAAGTCAAGAAGGGTTATCCGCCAACCAAAGACCTTCGAGTTCGACTACG
*
7567997 CTCAGCTTCGAGGGCATATC
66 CTCAGCTTCGAGGGCACATC
** * * **
7568017 ATTTGTAGCATAACATAAGTCAAGAAGGGTTATCTGCCAA-CAAAGACCTTTAAGTTCGACTACG
1 ATTTACAGCATAACTTAAGTCAAGAAGGGTTATCCGCCAACCAAAGACCTTCGAGTTCGACTACG
* *
7568081 CTCAGC-TCCAAGGCACATC
66 CTCAGCTTCGAGGGCACATC
* * * * * * *
7568100 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTAT----CAGCCAAAGACCTTCGAGTTCGATTACA
1 ATTTACAGCATAACTTAAGTCAAGAAGGGTTATCCGCCAACCAAAGACCTTCGAGTTCGACTACG
* *
7568161 CTCAGCTTCAAGGGTACATC
66 CTCAGCTTCGAGGGCACATC
** * *
7568181 ATTTGTAGCATAACTTAAGTCAATAAGGGTTATCTGCCAA-CAAAGACCTTCGAGTTCGACTACG
1 ATTTACAGCATAACTTAAGTCAAGAAGGGTTATCCGCCAACCAAAGACCTTCGAGTTCGACTACG
* * *
7568245 CTCAGC-TCCAAGGCATATC
66 CTCAGCTTCGAGGGCACATC
* * * * * * * ** * * **
7568264 ATTTGCAACATAGCTTAAGTCGAGAAGAGTTATCTG----CCAAATACCCCCGAGTTTGATTATA
1 ATTTACAGCATAACTTAAGTCAAGAAGGGTTATCCGCCAACCAAAGACCTTCGAGTTCGACTACG
* * *
7568325 TTAAGCTTCG-GAGGCATATC
66 CTCAGCTTCGAG-GGCACATC
* * * * * * * *
7568345 ATTTGCAGCACAACTTAAGTCTAGAAGGGTTGTCTGCCAACAAAAGACCTTTGAGTTCGAGTACG
1 ATTTACAGCATAACTTAAGTCAAGAAGGGTTATCCGCCAACCAAAGACCTTCGAGTTCGACTACG
* * * *
7568410 CTCAAC-TCAAAGGCATATC
66 CTCAGCTTCGAGGGCACATC
** * * * *** * * *
7568429 ATTCGCAGCATAGCTTAAGTCGAGAAGGGATAT----TTTCCAAAG-CCCTCAAGTTTGACTACG
1 ATTTACAGCATAACTTAAGTCAAGAAGGGTTATCCGCCAACCAAAGACCTTCGAGTTCGACTACG
7568489 CTCAGCTTCGAGGGCACATC
66 CTCAGCTTCGAGGGCACATC
* * * * * *
7568509 TTTTACAGCATAACTCAAGGCTAGAA-GGTTATCCGTC-ACCAAAAGACCTTCGAGTTTGACTAC
1 ATTTACAGCATAACTTAAGTCAAGAAGGGTTATCCGCCAACC-AAAGACCTTCGAGTTCGACTAC
*
7568572 GCTCAGCTTCGAGGGCACATA
65 GCTCAGCTTCGAGGGCACATC
* * ** * *
7568593 ATTTACAACATAACTTAAGTCAAGAAAGGTTATCTACCAACCAAAGACCTTTGAGTTCAACTACG
1 ATTTACAGCATAACTTAAGTCAAGAAGGGTTATCCGCCAACCAAAGACCTTCGAGTTCGACTACG
* *
7568658 CTCAGC-TCCAAGGCACATC
66 CTCAGCTTCGAGGGCACATC
** * * * * * *
7568677 ATTTGTAGTATAGCTTAAGTCGAGAAGGGCTATCTG----CCAAAGA-CTCTCGAGTTCGATTAC
1 ATTTACAGCATAACTTAAGTCAAGAAGGGTTATCCGCCAACCAAAGACCT-TCGAGTTCGACTAC
* *
7568737 ACTCAGCTTCGAGAGCACATC
65 GCTCAGCTTCGAGGGCACATC
* * * * * *
7568758 ATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAATACCTTTGAGTTTGACTACG
1 ATTTACAGCATAACTTAAGTCAAGAAGGGTTATCCGCCAACCAAAGACCTTCGAGTTCGACTACG
* * *
7568823 CTCAGC-TCCAAGGAACATC
66 CTCAGCTTCGAGGGCACATC
** * * * * * * *
7568842 ATTTGTAGTATAGCTTAAGTCAAGAAGGGCTATCTG----CCAAAGACCCTCGAGTTCGATTACA
1 ATTTACAGCATAACTTAAGTCAAGAAGGGTTATCCGCCAACCAAAGACCTTCGAGTTCGACTACG
* *
7568903 CTCAGCTTCGAGGGCATATT
66 CTCAGCTTCGAGGGCACATC
* * * * * *
7568923 ATTTACAGTATAACTCAAGGCTAA-AAGGGTTATCTGCCAACCCAAGACCTTCGAGTTCGATTAC
1 ATTTACAGCATAACTTAAGTC-AAGAAGGGTTATCCGCCAACCAAAGACCTTCGAGTTCGACTAC
* * * * *
7568987 ACTCAAC-TCAAAGGCACAAC
65 GCTCAGCTTCGAGGGCACATC
* * * *
7569007 ATTTACAACATAGCTCAAGGCAAGAAGGG
1 ATTTACAGCATAACTTAAGTCAAGAAGGG
7569036 CTATATGTCA
Statistics
Matches: 793, Mismatches: 185, Indels: 79
0.75 0.18 0.07
Matches are distributed among these distances:
79 27 0.03
80 130 0.16
81 185 0.23
82 4 0.01
83 83 0.10
84 253 0.32
85 106 0.13
86 5 0.01
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (85 bp):
ATTTACAGCATAACTTAAGTCAAGAAGGGTTATCCGCCAACCAAAGACCTTCGAGTTCGACTACG
CTCAGCTTCGAGGGCACATC
Found at i:7568610 original size:248 final size:250
Alignment explanation
Indices: 7567941--7568829 Score: 739
Period size: 248 Copynumber: 3.6 Consensus size: 250
7567931 AAACTATTTA
* * * * * *
7567941 CAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAACACCTTCGAGTTCAATTACACTCAGCTTC
1 CAGCATAGCTTAAGTCGAGAAGGGATATCTGCCAAAGACCCTCAAGTTCGACTACACTCAGCTTC
* * ** * * * **
7568006 GAGGGCATATCATTTGTAGCATAACAT-AAGTCAAGAAGGGTTATCTGCCAA-CAAAGACCTTTA
66 GAGAGCACATCATTTACAGCATAAC-TCAAGGCGAGAAGGGTTATCCGCCAACCAAAGACCTTCG
* * * * * * * * * *
7568069 AGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTAT
130 AGTTTGACTACGCTCAGCTTCGAGGGCACATAATTTACAACATAACTTAAGTCAAGAAAGGTTAT
* * * * * * * * *
7568133 C-AGC--C-AAAGACCTTCGAGTTCGATTACACTCAGCTTCAAGGGTACATCATTTG
195 CTACCAACAAAAGACCTTTGAGTTCAACTACGCTCAAC-TCAAAGGCACATCATTCG
* * * * * * * *
7568186 TAGCATAACTTAAGTCAATAAGGGTTATCTGCCAACAAAGACCTTCGAGTTCGACTACGCTCAGC
1 CAGCATAGCTTAAGTCGAGAAGGGATATCTG-C--CAAAGACCCTCAAGTTCGACTACACTCAGC
* * * * * * * * * * * **
7568251 TCCAAG-GCATATCATTTGCAACATAGCTTAAGTCGAGAAGAGTTATCTG----CCAAATACCCC
63 TTCGAGAGCACATCATTTACAGCATAACTCAAGGCGAGAAGGGTTATCCGCCAACCAAAGACCTT
* *** * * * * * * * *
7568311 CGAGTTTGATTATATTAAGCTTCG-GAGGCATATCATTTGCAGCACAACTTAAGTCTAGAAGGGT
128 CGAGTTTGACTACGCTCAGCTTCGAG-GGCACATAATTTACAACATAACTTAAGTCAAGAAAGGT
* * * * *
7568375 TGTCTGCCAACAAAAGACCTTTGAGTTCGAGTACGCTCAACTCAAAGGCATATCATTCG
192 TATCTACCAACAAAAGACCTTTGAGTTCAACTACGCTCAACTCAAAGGCACATCATTCG
* * * *
7568434 CAGCATAGCTTAAGTCGAGAAGGGATATTTTCCAAAG-CCCTCAAGTTTGACTACGCTCAGCTTC
1 CAGCATAGCTTAAGTCGAGAAGGGATATCTGCCAAAGACCCTCAAGTTCGACTACACTCAGCTTC
* * * *
7568498 GAGGGCACATCTTTTACAGCATAACTCAAGGCTAGAA-GGTTATCCGTC-ACCAAAAGACCTTCG
66 GAGAGCACATCATTTACAGCATAACTCAAGGCGAGAAGGGTTATCCGCCAACC-AAAGACCTTCG
7568561 AGTTTGACTACGCTCAGCTTCGAGGGCACATAATTTACAACATAACTTAAGTCAAGAAAGGTTAT
130 AGTTTGACTACGCTCAGCTTCGAGGGCACATAATTTACAACATAACTTAAGTCAAGAAAGGTTAT
* * * *
7568626 CTACCAACCAAAGACCTTTGAGTTCAACTACGCTCAGCTCCAAGGCACATCATTTG
195 CTACCAACAAAAGACCTTTGAGTTCAACTACGCTCAACTCAAAGGCACATCATTCG
* * * * * *
7568682 TAGTATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACTCTCGAGTTCGATTACACTCAGCTTC
1 CAGCATAGCTTAAGTCGAGAAGGGATATCTGCCAAAGACCCTCAAGTTCGACTACACTCAGCTTC
* * * * * *
7568747 GAGAGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAATACCTTTGA
66 GAGAGCACATCATTTACAGCATAACTCAAGGCGAGAAGGGTTATCCGCCAACCAAAGACCTTCGA
7568812 GTTTGACTACGCTCAGCT
131 GTTTGACTACGCTCAGCT
7568830 CCAAGGAACA
Statistics
Matches: 513, Mismatches: 111, Indels: 35
0.78 0.17 0.05
Matches are distributed among these distances:
244 51 0.10
245 94 0.18
246 3 0.01
247 39 0.08
248 207 0.40
249 79 0.15
250 37 0.07
251 3 0.01
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.26
Consensus pattern (250 bp):
CAGCATAGCTTAAGTCGAGAAGGGATATCTGCCAAAGACCCTCAAGTTCGACTACACTCAGCTTC
GAGAGCACATCATTTACAGCATAACTCAAGGCGAGAAGGGTTATCCGCCAACCAAAGACCTTCGA
GTTTGACTACGCTCAGCTTCGAGGGCACATAATTTACAACATAACTTAAGTCAAGAAAGGTTATC
TACCAACAAAAGACCTTTGAGTTCAACTACGCTCAACTCAAAGGCACATCATTCG
Found at i:7568714 original size:413 final size:414
Alignment explanation
Indices: 7568014--7569032 Score: 1162
Period size: 413 Copynumber: 2.5 Consensus size: 414
7568004 TCGAGGGCAT
* * * * * * *
7568014 ATCATTTGTAGCATAACATAAGTCAAGAAGGGTTATCTGCCAACAAAGACCTTTAAGTTCGACTA
1 ATCATTCGCAGCATAGCTTAAGTCAAGAAGGGATATCTG-C--CAAAGACCCTCAAGTTCGACTA
* * * * * * * * * * * *
7568079 CGCTCAGC-TCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTAT----CAGCCA
63 CACTCAGCTTCGAGGGCACATTATTTACAGCATAACTCAAGGCTAAAAGGGTTATCCGCCAACCA
* * ** *
7568139 AAGACCTTCGAGTTCGATTACACTCAGCTTCAAGGGTACATCATTTGTAGCATAACTTAAGTCAA
128 AAGACCTTCGAGTTCGATTACACTCAGCTTCAAGGGCACATAATTTACAACATAACTTAAGTCAA
* * * * *
7568204 TAAGGGTTATCTGCCAACAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTG
193 GAAAGGTTATCTACCAACAAAGACCTTCGAGTTCAACTACGCTCAGCTCCAAGGCACATCATTTG
* * * * *
7568269 CAACATAGCTTAAGTCGAGAAGAGTTATCTGCCAAATACCCCCGAGTTTGATTATATTAAGCTTC
258 CAACATAGCTTAAGTCGAGAAGAGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTAAGCTTC
* * *
7568334 G-GAGGCATATCATTTGCAGCACAACTTAAGTCTAGAAGGGTTGTCTGCCAACAAAAGACCTTTG
323 GAGA-GCACATCATTTGCAGCACAACTTAAGTCGAGAAGGGTTATCTGCCAACAAAAGACCTTTG
* * *
7568398 AGTTCGAGTACGCTCAACTCAAAGGCAT
387 AGTTCGACTACGCTCAACTCAAAGGAAC
* * * * *
7568426 ATCATTCGCAGCATAGCTTAAGTCGAGAAGGGATATTTTCCAAAG-CCCTCAAGTTTGACTACGC
1 ATCATTCGCAGCATAGCTTAAGTCAAGAAGGGATATCTGCCAAAGACCCTCAAGTTCGACTACAC
* *
7568490 TCAGCTTCGAGGGCACATCT-TTTACAGCATAACTCAAGGCTAGAA-GGTTATCCGTC-ACCAAA
66 TCAGCTTCGAGGGCACAT-TATTTACAGCATAACTCAAGGCTAAAAGGGTTATCCGCCAACC-AA
* * * *
7568552 AGACCTTCGAGTTTGACTACGCTCAGCTTCGAGGGCACATAATTTACAACATAACTTAAGTCAAG
129 AGACCTTCGAGTTCGATTACACTCAGCTTCAAGGGCACATAATTTACAACATAACTTAAGTCAAG
*
7568617 AAAGGTTATCTACCAACCAAAGACCTTTGAGTTCAACTACGCTCAGCTCCAAGGCACATCATTTG
194 AAAGGTTATCTACCAA-CAAAGACCTTCGAGTTCAACTACGCTCAGCTCCAAGGCACATCATTTG
* ** * * * *
7568682 TAGTATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACTCTCGAGTTCGATTACACTCAGCTTC
258 CAACATAGCTTAAGTCGAGAAGAGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTAAGCTTC
* * *
7568747 GAGAGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAATACCTTTGA
323 GAGAGCACATCATTTGCAGCACAACTTAAGTCGAGAAGGGTTATCTGCCAACAAAAGACCTTTGA
* * *
7568812 GTTTGACTACGCTCAGCTCCAAGGAAC
388 GTTCGACTACGCTCAACTCAAAGGAAC
* * * * * *
7568839 ATCATTTGTAGTATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTACAC
1 ATCATTCGCAGCATAGCTTAAGTCAAGAAGGGATATCTGCCAAAGACCCTCAAGTTCGACTACAC
* * * *
7568904 TCAGCTTCGAGGGCATATTATTTACAGTATAACTCAAGGCTAAAAGGGTTATCTGCCAACCCAAG
66 TCAGCTTCGAGGGCACATTATTTACAGCATAACTCAAGGCTAAAAGGGTTATCCGCCAACCAAAG
* * * * *
7568969 ACCTTCGAGTTCGATTACACTCAAC-TCAAAGGCACA-ACATTTACAACATAGCTCAAGGCAAGA
131 ACCTTCGAGTTCGATTACACTCAGCTTCAAGGGCACATA-ATTTACAACATAACTTAAGTCAAGA
7569032 A
195 A
7569033 GGGCTATATG
Statistics
Matches: 507, Mismatches: 86, Indels: 26
0.82 0.14 0.04
Matches are distributed among these distances:
408 26 0.05
409 35 0.07
411 3 0.01
412 103 0.20
413 215 0.42
414 89 0.18
415 33 0.07
416 3 0.01
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.26
Consensus pattern (414 bp):
ATCATTCGCAGCATAGCTTAAGTCAAGAAGGGATATCTGCCAAAGACCCTCAAGTTCGACTACAC
TCAGCTTCGAGGGCACATTATTTACAGCATAACTCAAGGCTAAAAGGGTTATCCGCCAACCAAAG
ACCTTCGAGTTCGATTACACTCAGCTTCAAGGGCACATAATTTACAACATAACTTAAGTCAAGAA
AGGTTATCTACCAACAAAGACCTTCGAGTTCAACTACGCTCAGCTCCAAGGCACATCATTTGCAA
CATAGCTTAAGTCGAGAAGAGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTAAGCTTCGAG
AGCACATCATTTGCAGCACAACTTAAGTCGAGAAGGGTTATCTGCCAACAAAAGACCTTTGAGTT
CGACTACGCTCAACTCAAAGGAAC
Found at i:7568745 original size:165 final size:164
Alignment explanation
Indices: 7567936--7569039 Score: 650
Period size: 165 Copynumber: 6.7 Consensus size: 164
7567926 TAAAGAAACT
* * * * * * * *
7567936 ATTTACAGCATAGCTTAAGTCGAGAAGGGCTATCTG----CCAAACACCTTCGAGTTCAATTACA
1 ATTTACAGCATAACTTAAGTCAAGAAGGGTTATCTGCCAACCAAAGACCTTTGAGTTCGACTACG
* * * * * * *
7567997 CTCAGCTTCGAGGGCATATCATTTGTAGCATAACATAAGTCAAGAAGGGTTATCTGCCAACAAAG
66 CTCAGC-TCCAAGGCACATCATTTGTAGTATAGCTTAAGTCAAGAAGGGCTATCTG-C--CAAAG
** * * * * *
7568062 ACCTTTAAGTTCGACTACGCTCAGC-TCCAAGGCACATC
127 ACC-TCGAGTTCGATTACACTCAGCTTCGAGGGCACATA
* * * * * * * *
7568100 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTA--T--CAGCCAAAGACCTTCGAGTTCGATTACA
1 ATTTACAGCATAACTTAAGTCAAGAAGGGTTATCTGCCAACCAAAGACCTTTGAGTTCGACTACG
* * * * * *
7568161 CTCAGCTTCAAGGGTACATCATTTGTAGCATAACTTAAGTCAATAAGGGTTATCTGCCAACAAAG
66 CTCAGCTCCAA-GGCACATCATTTGTAGTATAGCTTAAGTCAAGAAGGGCTATCTG-C--CAAAG
* * * * * *
7568226 ACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCATATC
127 ACC-TCGAGTTCGATTACACTCAGCTTCGAGGGCACATA
* * * * * * *** * * **
7568264 ATTTGCAACATAGCTTAAGTCGAGAAGAGTTATCTG----CCAAATACCCCCGAGTTTGATTATA
1 ATTTACAGCATAACTTAAGTCAAGAAGGGTTATCTGCCAACCAAAGACCTTTGAGTTCGACTACG
* * ** * * * * * * * *
7568325 TTAAGCTTCGGAGGCATATCATTTGCAGCACAACTTAAGTCTAGAAGGGTTGTCTGCCAACAAAA
66 CTCAGC-TCCAAGGCACATCATTTGTAGTATAGCTTAAGTCAAGAAGGGCTATCTG-C--C-AAA
* * * * * * * *
7568390 GACCTTTGAGTTCGAGTACGCTCAAC-TCAAAGGCATATC
126 GACC-TCGAGTTCGATTACACTCAGCTTCGAGGGCACATA
** * * * ** * ** *
7568429 ATTCGCAGCATAGCTTAAGTCGAGAAGGGATAT-T---TTCCAAAG-CCCTCAAGTTTGACTACG
1 ATTTACAGCATAACTTAAGTCAAGAAGGGTTATCTGCCAACCAAAGACCTTTGAGTTCGACTACG
* * * ** * * * * * * *
7568489 CTCAGCTTCGAGGGCACATCTTTTACAGCATAACTCAAGGCTAGAA-GGTTATCCGTCACCAAAA
66 CTCAGC-TCCAAGGCACATCATTTGTAGTATAGCTTAAGTCAAGAAGGGCTAT-C-T-GCC-AAA
* * *
7568553 GACCTTCGAGTTTGACTACGCTCAGCTTCGAGGGCACATA
126 GACC-TCGAGTTCGATTACACTCAGCTTCGAGGGCACATA
* * * *
7568593 ATTTACAACATAACTTAAGTCAAGAAAGGTTATCTACCAACCAAAGACCTTTGAGTTCAACTACG
1 ATTTACAGCATAACTTAAGTCAAGAAGGGTTATCTGCCAACCAAAGACCTTTGAGTTCGACTACG
*
7568658 CTCAGCTCCAAGGCACATCATTTGTAGTATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACTC
66 CTCAGCTCCAAGGCACATCATTTGTAGTATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGAC-C
* *
7568723 TCGAGTTCGATTACACTCAGCTTCGAGAGCACATC
130 TCGAGTTCGATTACACTCAGCTTCGAGGGCACATA
* * * *
7568758 ATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAATACCTTTGAGTTTGACTACG
1 ATTTACAGCATAACTTAAGTCAAGAAGGGTTATCTGCCAACCAAAGACCTTTGAGTTCGACTACG
*
7568823 CTCAGCTCCAAGGAACATCATTTGTAGTATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGACCC
66 CTCAGCTCCAAGGCACATCATTTGTAGTATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGA-CC
* *
7568888 TCGAGTTCGATTACACTCAGCTTCGAGGGCATATT
130 TCGAGTTCGATTACACTCAGCTTCGAGGGCACATA
* * * * * *
7568923 ATTTACAGTATAACTCAAGGCTAA-AAGGGTTATCTGCCAACCCAAGACCTTCGAGTTCGATTAC
1 ATTTACAGCATAACTTAAGTC-AAGAAGGGTTATCTGCCAACCAAAGACCTTTGAGTTCGACTAC
* * * * ** ** * *
7568987 ACTCAACTCAAAGGCACAACATTTACAACATAGCTCAAGGCAAGAAGGGCTAT
65 GCTCAGCTCCAAGGCACATCATTTGTAGTATAGCTTAAGTCAAGAAGGGCTAT
7569040 ATGTCAATAA
Statistics
Matches: 784, Mismatches: 132, Indels: 47
0.81 0.14 0.05
Matches are distributed among these distances:
162 1 0.00
163 34 0.04
164 325 0.41
165 357 0.46
166 6 0.01
167 1 0.00
168 36 0.05
169 24 0.03
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (164 bp):
ATTTACAGCATAACTTAAGTCAAGAAGGGTTATCTGCCAACCAAAGACCTTTGAGTTCGACTACG
CTCAGCTCCAAGGCACATCATTTGTAGTATAGCTTAAGTCAAGAAGGGCTATCTGCCAAAGACCT
CGAGTTCGATTACACTCAGCTTCGAGGGCACATA
Found at i:7572666 original size:25 final size:24
Alignment explanation
Indices: 7572638--7572686 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
7572628 ACCTTTGAGG
7572638 ACAAGGTGTA-ACCTCATAACAACTT
1 ACAAGGTGTATACCTCA-AA-AACTT
*
7572663 ACAAGGTTTATACCTCAAAAACTT
1 ACAAGGTGTATACCTCAAAAACTT
7572687 GTTTACACTC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 5 0.23
25 11 0.50
26 6 0.27
ACGTcount: A:0.41, C:0.22, G:0.10, T:0.27
Consensus pattern (24 bp):
ACAAGGTGTATACCTCAAAAACTT
Found at i:7573043 original size:21 final size:23
Alignment explanation
Indices: 7573007--7573056 Score: 77
Period size: 21 Copynumber: 2.3 Consensus size: 23
7572997 AAAAACTACA
7573007 TTTAATGCACAAGGGATCAATCC
1 TTTAATGCACAAGGGATCAATCC
*
7573030 TTTAATG-A-AAGGGATCAATCT
1 TTTAATGCACAAGGGATCAATCC
7573051 TTTAAT
1 TTTAAT
7573057 TTAAATATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 18 0.69
22 1 0.04
23 7 0.27
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (23 bp):
TTTAATGCACAAGGGATCAATCC
Found at i:7573118 original size:21 final size:21
Alignment explanation
Indices: 7573083--7573137 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
7573073 TTGCAAGAAA
* *
7573083 GGATTGATTCTTTTCATTGAG
1 GGATCGATCCTTTTCATTGAG
* *
7573104 TGATCGATCCTTTTCCTTGAG
1 GGATCGATCCTTTTCATTGAG
*
7573125 GGATTGATCCTTT
1 GGATCGATCCTTT
7573138 GGTAAAGGGA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.16, C:0.16, G:0.22, T:0.45
Consensus pattern (21 bp):
GGATCGATCCTTTTCATTGAG
Found at i:7574631 original size:6 final size:6
Alignment explanation
Indices: 7574620--7574673 Score: 87
Period size: 6 Copynumber: 9.5 Consensus size: 6
7574610 GACACGTATT
7574620 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACC-CG ACC-CG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
7574666 ACC-CG ACC
1 ACCACG ACC
7574674 CGAGACGAGA
Statistics
Matches: 48, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 15 0.31
6 33 0.69
ACGTcount: A:0.30, C:0.54, G:0.17, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:7575310 original size:21 final size:21
Alignment explanation
Indices: 7575284--7575351 Score: 93
Period size: 21 Copynumber: 3.2 Consensus size: 21
7575274 CACCAGTCGT
* *
7575284 TGCGATTTTGGACTATCGCAA
1 TGCGATATTCGACTATCGCAA
*
7575305 TGCGATAGTCGACTATCGCAA
1 TGCGATATTCGACTATCGCAA
7575326 TGCGA-ACTTCGACTATCGCAA
1 TGCGATA-TTCGACTATCGCAA
7575347 TGCGA
1 TGCGA
7575352 ATATGTAAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
20 1 0.02
21 41 0.98
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (21 bp):
TGCGATATTCGACTATCGCAA
Found at i:7575431 original size:21 final size:21
Alignment explanation
Indices: 7575294--7575435 Score: 116
Period size: 21 Copynumber: 6.8 Consensus size: 21
7575284 TGCGATTTTG
7575294 GACTATCGCAATGCGATAGTC
1 GACTATCGCAATGCGATAGTC
*
7575315 GACTATCGCAATGCGA-ACTTC
1 GACTATCGCAATGCGATA-GTC
7575336 GACTATCGCAATGCGAATA-T-
1 GACTATCGCAATGCG-ATAGTC
*
7575356 GTA-AATCGCAATGCGATAGTC
1 G-ACTATCGCAATGCGATAGTC
* *
7575377 GAAGT-TCGCATTGCGATAGTCC
1 G-ACTATCGCAATGCGATAGT-C
* * *
7575399 AAGT-TCGCATTGCGATAGTC
1 GACTATCGCAATGCGATAGTC
* *
7575419 GACTATCGGATTGCGAT
1 GACTATCGCAATGCGAT
7575436 TTACATATTC
Statistics
Matches: 103, Mismatches: 9, Indels: 18
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.03
20 17 0.17
21 80 0.78
22 2 0.02
23 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (21 bp):
GACTATCGCAATGCGATAGTC
Found at i:7575469 original size:21 final size:21
Alignment explanation
Indices: 7575358--7575475 Score: 94
Period size: 21 Copynumber: 5.7 Consensus size: 21
7575348 GCGAATATGT
* *
7575358 AAATCGCAATGCGATAGTCGA
1 AAATCGCATTGCGATAGTCCA
**
7575379 AGTTCGCATTGCGATAGTCCA
1 AAATCGCATTGCGATAGTCCA
** *
7575400 AGTTCGCATTGCGATAGTCGA
1 AAATCGCATTGCGATAGTCCA
** * * *
7575421 CTATCGGATTGCGAT-TTACA
1 AAATCGCATTGCGATAGTCCA
* * *
7575441 TATTCGCATAGCGATAGTCCA
1 AAATCGCATTGCGATAGTCCA
7575462 AAATCGCATTGCGA
1 AAATCGCATTGCGA
7575476 ATCTGGAAAC
Statistics
Matches: 74, Mismatches: 22, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
20 12 0.16
21 62 0.84
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (21 bp):
AAATCGCATTGCGATAGTCCA
Found at i:7575777 original size:20 final size:20
Alignment explanation
Indices: 7575754--7575805 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
7575744 AACGCGATCC
7575754 CCAGAATCGCAAATCAGTTT
1 CCAGAATCGCAAATCAGTTT
7575774 CCAGAATCGCAAATCAGTTT
1 CCAGAATCGCAAATCAGTTT
*
7575794 CCAAAATCGCAA
1 CCAGAATCGCAA
7575806 CGCGATTCTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.38, C:0.27, G:0.13, T:0.21
Consensus pattern (20 bp):
CCAGAATCGCAAATCAGTTT
Found at i:7575822 original size:21 final size:20
Alignment explanation
Indices: 7575796--7575893 Score: 65
Period size: 21 Copynumber: 4.8 Consensus size: 20
7575786 ATCAGTTTCC
7575796 AAAATCGCAACGCGATTCTTG
1 AAAATCGCAACGCGATT-TTG
* * **
7575817 AAAATCGCGATGCGATAGT-
1 AAAATCGCAACGCGATTTTG
**
7575836 ACAAATTCGCATTGCGATTTT-
1 A-AAA-TCGCAACGCGATTTTG
* *
7575857 ACATAATCGCAACGCGAATATG
1 A-A-AATCGCAACGCGATTTTG
7575879 AAAATCGCAACGCGA
1 AAAATCGCAACGCGA
7575894 ACACATAAAT
Statistics
Matches: 61, Mismatches: 12, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
19 1 0.02
20 17 0.28
21 40 0.66
22 3 0.05
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.22
Consensus pattern (20 bp):
AAAATCGCAACGCGATTTTG
Found at i:7575955 original size:20 final size:20
Alignment explanation
Indices: 7575861--7576229 Score: 458
Period size: 20 Copynumber: 18.4 Consensus size: 20
7575851 GATTTTACAT
* ** *
7575861 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGTATCCGTA
* *
7575881 AATCGCAACGCG-AACACATA
1 AATCGCAACGCGTATC-CGTA
7575901 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
7575921 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
**
7575941 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGTATCCGTA
*
7575961 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
7575981 TATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
7576001 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* *
7576021 AACCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
7576041 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
7576061 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
7576081 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
7576101 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
7576121 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
7576141 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
7576161 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
7576181 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
7576201 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
7576221 AATCACAAC
1 AATCGCAAC
7576230 ACTGAAATTT
Statistics
Matches: 305, Mismatches: 36, Indels: 16
0.85 0.10 0.04
Matches are distributed among these distances:
19 3 0.01
20 299 0.98
21 3 0.01
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGTATCCGTA
Found at i:7576952 original size:24 final size:24
Alignment explanation
Indices: 7576908--7576954 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
7576898 AAATTTGGTC
*
7576908 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCAGACTTTGATA
*
7576932 TTGGTCAATA-CACAGATTTTGAT
1 TTGGTCAATATC-CAGACTTTGAT
7576955 GATGTTTCAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCAGACTTTGATA
Found at i:7579443 original size:19 final size:19
Alignment explanation
Indices: 7579419--7579625 Score: 317
Period size: 19 Copynumber: 11.4 Consensus size: 19
7579409 GCAACGAGAG
*
7579419 AATCGCAATGCGAAATAAA
1 AATCGCAATGCGAAATGAA
7579438 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
7579457 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
7579476 AATCGCAA--CGACAT---
1 AATCGCAATGCGAAATGAA
*
7579490 AATCGCAATGCGAAATTAA
1 AATCGCAATGCGAAATGAA
7579509 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
7579528 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
7579547 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
7579566 AATCGCAA--CGAAA-G--
1 AATCGCAATGCGAAATGAA
7579580 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
7579599 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
7579618 AATCGCAA
1 AATCGCAA
7579626 CGAGATAATC
Statistics
Matches: 174, Mismatches: 4, Indels: 20
0.88 0.02 0.10
Matches are distributed among these distances:
14 16 0.09
16 11 0.06
17 11 0.06
19 136 0.78
ACGTcount: A:0.48, C:0.17, G:0.19, T:0.15
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:7579524 original size:71 final size:71
Alignment explanation
Indices: 7579408--7579663 Score: 362
Period size: 71 Copynumber: 3.6 Consensus size: 71
7579398 AATCGCAACG
* *
7579408 CGCAACGAGAGAATCGCAATGCGAAATAAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAAT
1 CGCAACGAGATAATCGCAATGCGAAATTAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAAT
7579473 GAAAAT
66 GAAAAT
*
7579479 CGCAACGACATAATCGCAATGCGAAATTAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAAT
1 CGCAACGAGATAATCGCAATGCGAAATTAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAAT
7579544 GAAAAT
66 GAAAAT
* *
7579550 CGCAATGCGAAATGAAAATCGCAA--CG-AA--AGAATCGCAATGCGAAATGAAAATCGCAATGC
1 CGCAA--CG--A-GATAATCGCAATGCGAAATTAAAATCGCAATGCGAAATGAAAATCGCAATGC
7579610 GAAATGAAAAT
61 GAAATGAAAAT
*
7579621 CGCAACGAGATAATCGCAATGCGAAATTATAAA-CGCATTGCGA
1 CGCAACGAGATAATCGCAATGCGAAATTA-AAATCGCAATGCGA
7579664 TTTTCATTTC
Statistics
Matches: 165, Mismatches: 9, Indels: 22
0.84 0.05 0.11
Matches are distributed among these distances:
66 10 0.06
67 1 0.01
68 2 0.01
69 4 0.02
71 130 0.79
72 2 0.01
73 4 0.02
74 2 0.01
75 1 0.01
76 9 0.05
ACGTcount: A:0.46, C:0.18, G:0.20, T:0.16
Consensus pattern (71 bp):
CGCAACGAGATAATCGCAATGCGAAATTAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAAT
GAAAAT
Found at i:7579572 original size:90 final size:90
Alignment explanation
Indices: 7579419--7579647 Score: 378
Period size: 90 Copynumber: 2.6 Consensus size: 90
7579409 GCAACGAGAG
*
7579419 AATCGCAATGCGAAATAAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA
* * *
7579484 CGACATAATCGCAATGCGAAATTAA
66 CGAAAGAATCGCAATGCGAAATGAA
7579509 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA
7579574 CGAAAGAATCGCAATGCGAAATGAA
66 CGAAAGAATCGCAATGCGAAATGAA
*
7579599 AATCGCAATGCGAAATGAAAATCGCAA--CG--A-GATAATCGCAATGCGAAAT
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAAT
7579648 TATAAACGCA
Statistics
Matches: 134, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
85 18 0.13
86 1 0.01
88 2 0.01
90 113 0.84
ACGTcount: A:0.47, C:0.17, G:0.20, T:0.16
Consensus pattern (90 bp):
AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA
CGAAAGAATCGCAATGCGAAATGAA
Found at i:7579663 original size:52 final size:52
Alignment explanation
Indices: 7579408--7579647 Score: 294
Period size: 52 Copynumber: 4.5 Consensus size: 52
7579398 AATCGCAACG
* *
7579408 CGCAACGAGAGAATCGCAATGCGAAATAAAAATCGCAATGCGAAATGAAAAT
1 CGCAACGAGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAAT
* *
7579460 CGCAATGCGAAATGAAAATCGCAA--CGACAT---AATCGCAATGCGAAATTAAAAT
1 CGCAA--CG--A-GAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAAT
7579512 CGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAAT
1 CGCAA--CG--A-GAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAAT
7579569 CGCAACGA-AAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAAT
1 CGCAACGAGAA-AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAAT
*
7579621 CGCAACGAGATAATCGCAATGCGAAAT
1 CGCAACGAGAAAATCGCAATGCGAAAT
7579648 TATAAACGCA
Statistics
Matches: 170, Mismatches: 6, Indels: 24
0.85 0.03 0.12
Matches are distributed among these distances:
51 2 0.01
52 115 0.68
53 2 0.01
54 7 0.04
55 7 0.04
56 1 0.01
57 36 0.21
ACGTcount: A:0.47, C:0.18, G:0.20, T:0.15
Consensus pattern (52 bp):
CGCAACGAGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAAT
Found at i:7579744 original size:19 final size:19
Alignment explanation
Indices: 7579654--7579736 Score: 113
Period size: 19 Copynumber: 4.6 Consensus size: 19
7579644 AAATTATAAA
7579654 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
*
7579673 CCGCATTGCGA--TTC-TCT
1 -CGCATTGCGATTTTCATTT
7579690 CG--TTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
7579707 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
7579726 CGCATTGCGAT
1 CGCATTGCGAT
7579737 AGTCATTTTT
Statistics
Matches: 56, Mismatches: 2, Indels: 11
0.81 0.03 0.16
Matches are distributed among these distances:
14 6 0.11
16 5 0.09
17 6 0.11
18 3 0.05
19 26 0.46
20 10 0.18
ACGTcount: A:0.14, C:0.24, G:0.18, T:0.43
Consensus pattern (19 bp):
CGCATTGCGATTTTCATTT
Found at i:7579867 original size:14 final size:14
Alignment explanation
Indices: 7579838--7579877 Score: 62
Period size: 14 Copynumber: 2.8 Consensus size: 14
7579828 TTCGCATCAA
7579838 TTACACAATCAACTT
1 TTACA-AATCAACTT
*
7579853 TTACAAATCATCTT
1 TTACAAATCAACTT
7579867 TTACAAATCAA
1 TTACAAATCAA
7579878 TTAAACAATC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 18 0.78
15 5 0.22
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (14 bp):
TTACAAATCAACTT
Found at i:7581827 original size:19 final size:19
Alignment explanation
Indices: 7581787--7581885 Score: 109
Period size: 19 Copynumber: 5.4 Consensus size: 19
7581777 TAGTTTACTT
* *
7581787 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC-CAAAA
7581807 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
**
7581826 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAACCAAAA
*
7581845 TCGCAA--CG--A-CAGAA
1 TCGCAACGCGAAACCAAAA
7581859 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
7581878 TCGCAACG
1 TCGCAACG
7581886 AAAGAATCGC
Statistics
Matches: 67, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
14 9 0.13
15 1 0.01
16 2 0.03
17 2 0.03
18 1 0.01
19 39 0.58
20 13 0.19
ACGTcount: A:0.45, C:0.28, G:0.17, T:0.09
Consensus pattern (19 bp):
TCGCAACGCGAAACCAAAA
Found at i:7581862 original size:14 final size:14
Alignment explanation
Indices: 7581843--7581899 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
7581833 GCGAAATGAA
7581843 AATCGCAACGACAG
1 AATCGCAACGACAG
*
7581857 AATCGCAACGCGAAACCAA
1 AATCGCAA--CG--A-CAG
*
7581876 AATCGCAACGAAAG
1 AATCGCAACGACAG
7581890 AATCGCAACG
1 AATCGCAACG
7581900 CGAAATGAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
14 19 0.54
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.29
ACGTcount: A:0.46, C:0.28, G:0.19, T:0.07
Consensus pattern (14 bp):
AATCGCAACGACAG
Found at i:7581866 original size:33 final size:33
Alignment explanation
Indices: 7581824--7581915 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
7581814 GCGAAACCAA
*
7581824 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
**
7581857 AATCGCAACGCGAAACCAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
7581890 AATCGCAACGCGAAATG-AAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
7581916 TGCGATTTTG
Statistics
Matches: 54, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
32 9 0.17
33 45 0.83
ACGTcount: A:0.47, C:0.25, G:0.20, T:0.09
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:7581938 original size:19 final size:19
Alignment explanation
Indices: 7581916--7582024 Score: 112
Period size: 19 Copynumber: 6.3 Consensus size: 19
7581906 GAAATCGCAA
7581916 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
7581935 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
7581949 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
7581968 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
7581982 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
7582001 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
7582020 TGCGA
1 TGCGA
7582025 AAGTAAACTA
Statistics
Matches: 73, Mismatches: 7, Indels: 20
0.73 0.07 0.20
Matches are distributed among these distances:
14 22 0.30
15 1 0.01
16 2 0.03
17 2 0.03
18 2 0.03
19 44 0.60
ACGTcount: A:0.07, C:0.18, G:0.29, T:0.45
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:7581958 original size:33 final size:33
Alignment explanation
Indices: 7581916--7582007 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
7581906 GAAATCGCAA
7581916 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
7581949 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
7581982 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
7582008 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 54 0.96
34 2 0.04
ACGTcount: A:0.08, C:0.18, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:7582375 original size:182 final size:185
Alignment explanation
Indices: 7582068--7582810 Score: 1346
Period size: 182 Copynumber: 4.0 Consensus size: 185
7582058 TTGAATGGAT
7582068 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
7582133 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
7582198 TACTATTTCACA-G-TAAAGAATACA-AGTTTAGCAGAATTGGCAGCAACCGAAC
131 TACTATTTCACAGGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
7582250 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
7582315 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGAC-AA
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
7582379 TA-TATTT--CAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
131 TACTATTTCACAG-GTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
7582432 AAATTTACTTTCAACCAAAAGAC-AAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
7582496 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGAC-AA
7582561 ATACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
130 ATACTATTTCACAG-GTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
7582618 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
7582682 AGTTTAGCAGAATTGGCAGCAAACCGAAC-AATTTACTTTCAACCAAAAGACAAAACAAAGACAA
66 AGTTTAGCAGAATTGGCAGC-AACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAA
* *
7582746 ATACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAA-TGGCAACAACCGAAT
130 ATACTATTTCACAG-GTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
7582802 AAATTTACT
1 AAATTTACT
7582811 AAGCAATCTA
Statistics
Matches: 548, Mismatches: 2, Indels: 20
0.96 0.00 0.04
Matches are distributed among these distances:
178 2 0.00
180 6 0.01
181 118 0.22
182 178 0.32
183 4 0.01
184 27 0.05
185 43 0.08
186 147 0.27
187 23 0.04
ACGTcount: A:0.47, C:0.19, G:0.13, T:0.22
Consensus pattern (185 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
TACTATTTCACAGGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:7582543 original size:92 final size:93
Alignment explanation
Indices: 7582068--7582810 Score: 1366
Period size: 92 Copynumber: 8.1 Consensus size: 93
7582058 TTGAATGGAT
7582068 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
7582133 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
7582161 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACA--G-TAAAGAATACA-
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
7582222 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
7582250 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
7582315 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
7582343 AAATTTACTTTCAACCAAAAGACAAAACAAAGAC-AATA-TATTT--CAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
7582404 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
7582432 AAATTTACTTTCAACCAAAAGAC-AAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
7582496 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
7582524 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAAATACTATTTCACAGTGTTAAAGAATACA
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGAC-AAATACTATTTCACAGTGTTAAAGAATACA
7582589 CAGTTTAGCAGAATTGGCAGCAACCGAAC
65 CAGTTTAGCAGAATTGGCAGCAACCGAAC
7582618 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
7582682 AGTTTAGCAGAATTGGCAGCAAACCGAAC
66 AGTTTAGCAGAATTGGCAGC-AACCGAAC
7582711 -AATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
* *
7582775 AGTTTAGCAGAA-TGGCAACAACCGAAT
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
7582802 AAATTTACT
1 AAATTTACT
7582811 AAGCAATCTA
Statistics
Matches: 635, Mismatches: 2, Indels: 27
0.96 0.00 0.04
Matches are distributed among these distances:
88 10 0.02
89 150 0.24
90 16 0.03
91 14 0.02
92 181 0.29
93 171 0.27
94 93 0.15
ACGTcount: A:0.47, C:0.19, G:0.13, T:0.22
Consensus pattern (93 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:7584513 original size:14 final size:14
Alignment explanation
Indices: 7584494--7584583 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
7584484 GTTGAAATGA
7584494 AATCGCAACGAGAG
1 AATCGCAACGAGAG
7584508 AATCGCAACGCGAGATG
1 AATCGCAA--CGAGA-G
7584525 ACAATCGCAACGAGAG
1 --AATCGCAACGAGAG
*
7584541 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
7584560 AATCGCAACGAGAG
1 AATCGCAACGAGAG
7584574 AATCGCAACG
1 AATCGCAACG
7584584 CGAAATGAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.42, C:0.23, G:0.26, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:7584531 original size:33 final size:33
Alignment explanation
Indices: 7584487--7584600 Score: 203
Period size: 33 Copynumber: 3.5 Consensus size: 33
7584477 TCTTTTGGTT
7584487 GAAATG-AAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
7584519 GAGATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
7584552 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
7584585 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
7584601 TGCGATTTTG
Statistics
Matches: 77, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
32 5 0.06
33 72 0.94
ACGTcount: A:0.45, C:0.21, G:0.25, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:7584532 original size:19 final size:18
Alignment explanation
Indices: 7584490--7584605 Score: 94
Period size: 19 Copynumber: 6.9 Consensus size: 18
7584480 TTTGGTTGAA
7584490 ATGAAATCGCAA--CGAG
1 ATGAAATCGCAACGCGAG
7584506 A-G-AATCGCAACGCGAG
1 ATGAAATCGCAACGCGAG
7584522 ATGACAATCGCAA--CGAG
1 ATGA-AATCGCAACGCGAG
*
7584539 A-G-AATCGCAACGCGAA
1 ATGAAATCGCAACGCGAG
7584555 ATGAAAATCGCAA--CGAG
1 ATG-AAATCGCAACGCGAG
*
7584572 A-G-AATCGCAACGCGAA
1 ATGAAATCGCAACGCGAG
*
7584588 ATGAAAATCGCAATGCGA
1 ATG-AAATCGCAACGCGA
7584606 TTTTGGTTTC
Statistics
Matches: 81, Mismatches: 4, Indels: 27
0.72 0.04 0.24
Matches are distributed among these distances:
14 24 0.30
15 1 0.01
16 16 0.20
17 12 0.15
19 28 0.35
ACGTcount: A:0.43, C:0.22, G:0.25, T:0.10
Consensus pattern (18 bp):
ATGAAATCGCAACGCGAG
Found at i:7584636 original size:14 final size:14
Alignment explanation
Indices: 7584617--7584669 Score: 70
Period size: 14 Copynumber: 3.6 Consensus size: 14
7584607 TTTGGTTTCG
7584617 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
7584631 CGTTGCGATTTCATTT
1 CGTTGCGA-TTC-TCT
7584647 GCGTTGCGATTCTCT
1 -CGTTGCGATTCTCT
7584662 CGTTGCGA
1 CGTTGCGA
7584670 CAGTCATTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
14 16 0.47
15 5 0.15
16 5 0.15
17 8 0.24
ACGTcount: A:0.09, C:0.25, G:0.25, T:0.42
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:7584831 original size:33 final size:32
Alignment explanation
Indices: 7584789--7584858 Score: 104
Period size: 33 Copynumber: 2.2 Consensus size: 32
7584779 AATACTAACT
*
7584789 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCG-AA
* *
7584822 TGAAAATCGCAACGACAGAATCGTAACGCGAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAA
7584854 TGAAA
1 TGAAA
7584859 TCTAAGTGAA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 7 0.21
33 27 0.79
ACGTcount: A:0.47, C:0.19, G:0.23, T:0.11
Consensus pattern (32 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAA
Found at i:7585091 original size:23 final size:22
Alignment explanation
Indices: 7585038--7585093 Score: 67
Period size: 23 Copynumber: 2.5 Consensus size: 22
7585028 TGGTTGTGAG
**
7585038 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
7585060 GGAAATCTTCGGAGATGGGGGAC
1 GGATTTCTTCGGAGAT-GGGGAC
7585083 GGATTTCTTCG
1 GGATTTCTTCG
7585094 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
22 12 0.44
23 15 0.56
ACGTcount: A:0.20, C:0.16, G:0.41, T:0.23
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:7585262 original size:20 final size:20
Alignment explanation
Indices: 7585237--7585429 Score: 210
Period size: 20 Copynumber: 9.6 Consensus size: 20
7585227 CTTTAAATAT
7585237 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
7585257 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
* *
7585279 -TCGTTACGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
7585298 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
7585318 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
7585338 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
7585358 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
7585378 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
7585398 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
7585418 CGCGTTGCGATT
1 CGCGTTGCGATT
7585430 ATGGAAAATC
Statistics
Matches: 144, Mismatches: 24, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
19 2 0.01
20 126 0.88
21 14 0.10
22 2 0.01
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.35
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:7585424 original size:60 final size:60
Alignment explanation
Indices: 7585237--7585429 Score: 242
Period size: 60 Copynumber: 3.2 Consensus size: 60
7585227 CTTTAAATAT
** *
7585237 CGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTACGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGCGTTGCGATTTACGGATA
* * *** *
7585298 CGCGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
* * * ** *
7585358 CACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
7585418 CGCGTTGCGATT
1 CGCGTTGCGATT
7585430 ATGGAAAATC
Statistics
Matches: 110, Mismatches: 22, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
60 82 0.75
61 28 0.25
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.35
Consensus pattern (60 bp):
CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
Found at i:7585510 original size:20 final size:20
Alignment explanation
Indices: 7585485--7585536 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
7585475 AAGAATCGCG
*
7585485 TTGCGATTTTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
7585505 TTGCGATTCTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
7585525 TTGCGATTCTGG
1 TTGCGATTCTGG
7585537 GGATCGCGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.21, C:0.13, G:0.27, T:0.38
Consensus pattern (20 bp):
TTGCGATTCTGGAAACTGAT
Found at i:7592904 original size:16 final size:17
Alignment explanation
Indices: 7592883--7592917 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
7592873 GGAAACTAGT
7592883 TTAT-AACTTTTAATAA
1 TTATAAACTTTTAATAA
7592899 TTATAAACTTTTAATAA
1 TTATAAACTTTTAATAA
7592916 TT
1 TT
7592918 CAGAAAATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (17 bp):
TTATAAACTTTTAATAA
Found at i:7593519 original size:11 final size:11
Alignment explanation
Indices: 7593499--7593561 Score: 54
Period size: 11 Copynumber: 5.4 Consensus size: 11
7593489 GTTAGATAAG
7593499 AAATAATAAAT
1 AAATAATAAAT
*
7593510 AAATATTAAAT
1 AAATAATAAAT
* *
7593521 AAATCAAAGAAAA
1 AAAT--AATAAAT
7593534 AAATAATAAAAT
1 AAATAAT-AAAT
*
7593546 AAAATAAAAAAT
1 -AAATAATAAAT
7593558 AAAT
1 AAAT
7593562 CAAAGGAAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
11 20 0.49
12 7 0.17
13 14 0.34
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.22
Consensus pattern (11 bp):
AAATAATAAAT
Found at i:7593539 original size:17 final size:17
Alignment explanation
Indices: 7593517--7593579 Score: 54
Period size: 19 Copynumber: 3.4 Consensus size: 17
7593507 AATAAATATT
7593517 AAATAAATCAAAGAAAA
1 AAATAAATCAAAGAAAA
** *
7593534 AAATAATAAAATAAAATAAA
1 AAATAA-ATCA-AAGA-AAA
7593554 AAATAAATCAAAGGAAAA
1 AAATAAATCAAA-GAAAA
7593572 AAGATAAA
1 AA-ATAAA
7593580 AATTAAAATA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
17 6 0.17
18 9 0.26
19 11 0.31
20 9 0.26
ACGTcount: A:0.76, C:0.03, G:0.06, T:0.14
Consensus pattern (17 bp):
AAATAAATCAAAGAAAA
Found at i:7593543 original size:20 final size:20
Alignment explanation
Indices: 7593518--7593582 Score: 59
Period size: 20 Copynumber: 3.4 Consensus size: 20
7593508 ATAAATATTA
7593518 AATAAATCAAAGAAAAAAAT
1 AATAAATCAAAGAAAAAAAT
*
7593538 AATAAA--ATAA-AATAAAA-
1 AATAAATCA-AAGAAAAAAAT
7593555 AATAAATCAAAGGAAAAAAGAT
1 AATAAATCAAA-GAAAAAA-AT
7593577 AA-AAAT
1 AATAAAT
7593583 TAAAATAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 13
0.71 0.04 0.25
Matches are distributed among these distances:
17 6 0.17
18 9 0.25
19 3 0.08
20 11 0.31
21 5 0.14
22 2 0.06
ACGTcount: A:0.75, C:0.03, G:0.06, T:0.15
Consensus pattern (20 bp):
AATAAATCAAAGAAAAAAAT
Found at i:7593549 original size:13 final size:12
Alignment explanation
Indices: 7593499--7593686 Score: 66
Period size: 13 Copynumber: 14.8 Consensus size: 12
7593489 GTTAGATAAG
*
7593499 AAATAATAAAT-
1 AAATAAAAAATA
**
7593510 AAATATTAAAT-
1 AAATAAAAAATA
7593521 AAATCAAAGAAA-A
1 AAAT-AAA-AAATA
7593534 AAATAATAAAATA
1 AAATAA-AAAATA
7593547 AAATAAAAAAT-
1 AAATAAAAAATA
7593558 AAATCAAAGGAAA-A
1 AAAT-AAA--AAATA
*
7593572 AAGATAAAAATTA
1 AA-ATAAAAAATA
*** *
7593585 AAATAAATTTTTT
1 AAATAAA-AAATA
*
7593598 AAATAAATCAAAGA
1 AAATAAA--AAATA
*
7593612 GAAA-AAAAATTA
1 -AAATAAAAAATA
7593624 AAATTAAAAGTAATA
1 AAA-TAAAA--AATA
7593639 AAAT-AAAAATA
1 AAATAAAAAATA
* *
7593650 ATAATAAGAAGTAA
1 A-AATAAAAAAT-A
7593664 AAATAAATAAATA
1 AAATAAA-AAATA
7593677 AAATAAAAAA
1 AAATAAAAAA
7593687 CATACTAAAA
Statistics
Matches: 135, Mismatches: 20, Indels: 43
0.68 0.10 0.22
Matches are distributed among these distances:
11 26 0.19
12 30 0.22
13 51 0.38
14 17 0.13
15 11 0.08
ACGTcount: A:0.72, C:0.02, G:0.05, T:0.22
Consensus pattern (12 bp):
AAATAAAAAATA
Found at i:7593558 original size:37 final size:37
Alignment explanation
Indices: 7593499--7593645 Score: 122
Period size: 44 Copynumber: 3.7 Consensus size: 37
7593489 GTTAGATAAG
**
7593499 AAATAAT-AAAT-AAATATTAAATAAATCAAAGAAAA
1 AAATAATAAAATAAAATAAAAAATAAATCAAAGAAAA
7593534 AAATAATAAAATAAAATAAAAAATAAATCAAAGGAAAA
1 AAATAATAAAATAAAATAAAAAATAAATCAAA-GAAAA
*
7593572 AAGATAA-AAATTAAAATAAATTTTTTAAATAAATCAAAGAGAAA
1 AA-ATAATAAAATAAAATAAA------AAATAAATCAAAGA-AAA
7593616 AAA-AATTAAAATTAAAAGTAATAAAATAAA
1 AAATAA-TAAAA-TAAAA-TAA-AAAATAAA
7593646 AATAATAATA
Statistics
Matches: 92, Mismatches: 4, Indels: 26
0.75 0.03 0.21
Matches are distributed among these distances:
35 7 0.08
36 4 0.04
37 17 0.18
38 19 0.21
39 4 0.04
41 7 0.08
42 2 0.02
43 3 0.03
44 20 0.22
45 5 0.05
46 3 0.03
47 1 0.01
ACGTcount: A:0.71, C:0.02, G:0.05, T:0.22
Consensus pattern (37 bp):
AAATAATAAAATAAAATAAAAAATAAATCAAAGAAAA
Found at i:7593578 original size:81 final size:84
Alignment explanation
Indices: 7593492--7593645 Score: 212
Period size: 81 Copynumber: 1.9 Consensus size: 84
7593482 CAAAAATGTT
7593492 AGATAAGAAATAATAAATAAA-TATTAAATAAATCAAAGA-AAAAAATAA-TAAAA-TAAAA-TA
1 AGATAA-AAATAA-AAATAAATTATTAAATAAATCAAAGAGAAAAAA-AATTAAAATTAAAAGTA
7593552 A-AAAATAAATCAAAGGAAAAA
63 ATAAAATAAATCAAAGGAAAAA
* *
7593573 AGATAAAAATTAAAATAAATTTTTTAAATAAATCAAAGAGAAAAAAAATTAAAATTAAAAGTAAT
1 AGATAAAAATAAAAATAAA-TTATTAAATAAATCAAAGAGAAAAAAAATTAAAATTAAAAGTAAT
7593638 AAAATAAA
65 AAAATAAA
7593646 AATAATAATA
Statistics
Matches: 64, Mismatches: 2, Indels: 10
0.84 0.03 0.13
Matches are distributed among these distances:
79 7 0.11
80 5 0.08
81 25 0.39
82 11 0.17
83 5 0.08
84 3 0.05
85 8 0.12
ACGTcount: A:0.70, C:0.02, G:0.06, T:0.22
Consensus pattern (84 bp):
AGATAAAAATAAAAATAAATTATTAAATAAATCAAAGAGAAAAAAAATTAAAATTAAAAGTAATA
AAATAAATCAAAGGAAAAA
Found at i:7593581 original size:45 final size:46
Alignment explanation
Indices: 7593526--7593647 Score: 117
Period size: 45 Copynumber: 2.7 Consensus size: 46
7593516 TAAATAAATC
*
7593526 AAAGAAAAAAATAATAAAATAAAATAAAAAATAAATCAAAG-GAAA
1 AAAGATAAAAATAATAAAATAAAATAAAAAATAAATCAAAGAGAAA
* ***
7593571 AAAGATAAAAAT--TAAAATAAATTTTTTAAATAAATCAAAGAGAAA
1 AAAGATAAAAATAATAAAATAAA-ATAAAAAATAAATCAAAGAGAAA
* *
7593616 AAAAATTAAAATTAA-AAGTAATAAAATAAAAA
1 AAAGA-TAAAAATAATAA--AATAAAATAAAAA
7593648 TAATAATAAG
Statistics
Matches: 59, Mismatches: 11, Indels: 11
0.73 0.14 0.14
Matches are distributed among these distances:
43 9 0.15
44 14 0.24
45 19 0.32
46 6 0.10
47 2 0.03
48 3 0.05
49 6 0.10
ACGTcount: A:0.72, C:0.02, G:0.06, T:0.20
Consensus pattern (46 bp):
AAAGATAAAAATAATAAAATAAAATAAAAAATAAATCAAAGAGAAA
Found at i:7593666 original size:19 final size:17
Alignment explanation
Indices: 7593634--7593685 Score: 68
Period size: 19 Copynumber: 2.8 Consensus size: 17
7593624 AAATTAAAAG
7593634 TAATAAAATAAAAATAA
1 TAATAAAATAAAAATAA
7593651 TAATAAGAAGTAAAAATAAA
1 TAATAA-AA-TAAAAAT-AA
7593671 TAAATAAAATAAAAA
1 T-AATAAAATAAAAA
7593686 ACATACTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
17 6 0.19
18 2 0.06
19 13 0.42
20 5 0.16
21 5 0.16
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.21
Consensus pattern (17 bp):
TAATAAAATAAAAATAA
Found at i:7593686 original size:21 final size:21
Alignment explanation
Indices: 7593597--7593717 Score: 59
Period size: 23 Copynumber: 5.3 Consensus size: 21
7593587 ATAAATTTTT
7593597 TAAAT-AAATCAAAGAGAAAAAA
1 TAAATAAAAT-AAA-AGAAAAAA
*
7593619 -AATTAAAATTAAAAGTAATAAAA
1 TAAATAAAA-TAAAAG-AA-AAAA
*
7593642 TAAAAATAATAATAAGAAGTAAAAA
1 T--AAATAA-AATAA-AAGAAAAAA
*
7593667 TAAAT-AAATAAAATAAAAAA
1 TAAATAAAATAAAAGAAAAAA
* *
7593687 CATACTAAAATTAACAAGAAAAAA
1 TA-AATAAAA-TAA-AAGAAAAAA
*
7593711 TGAATAA
1 TAAATAA
7593718 CTAAAAAATG
Statistics
Matches: 75, Mismatches: 11, Indels: 25
0.68 0.10 0.23
Matches are distributed among these distances:
20 8 0.11
21 12 0.16
22 12 0.16
23 16 0.21
24 8 0.11
25 5 0.07
26 9 0.12
27 5 0.07
ACGTcount: A:0.71, C:0.03, G:0.06, T:0.20
Consensus pattern (21 bp):
TAAATAAAATAAAAGAAAAAA
Found at i:7593725 original size:15 final size:15
Alignment explanation
Indices: 7593705--7593743 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
7593695 AATTAACAAG
7593705 AAAAAATGAATAACT
1 AAAAAATGAATAACT
*
7593720 AAAAAATG-ATAGCT
1 AAAAAATGAATAACT
*
7593734 AAAAATTGAA
1 AAAAAATGAA
7593744 AGGACCAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.64, C:0.05, G:0.10, T:0.21
Consensus pattern (15 bp):
AAAAAATGAATAACT
Found at i:7594844 original size:18 final size:17
Alignment explanation
Indices: 7594812--7594858 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 17
7594802 CAAAAAAACT
*
7594812 AAATAAAGAAA-AAATAT
1 AAATAAA-AAATAAATAA
*
7594829 TAATAAAATAATAAATAA
1 AAATAAAA-AATAAATAA
7594847 AAATAAAAAATA
1 AAATAAAAAATA
7594859 TTAATATAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
16 1 0.04
17 12 0.48
18 12 0.48
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (17 bp):
AAATAAAAAATAAATAA
Found at i:7594858 original size:31 final size:30
Alignment explanation
Indices: 7594820--7594879 Score: 93
Period size: 31 Copynumber: 2.0 Consensus size: 30
7594810 CTAAATAAAG
7594820 AAAAAATATTAATAAAATAATAAATAAAAAT
1 AAAAAATATTAATAAAAT-ATAAATAAAAAT
* *
7594851 AAAAAATATTAATATAATATATATAAAAA
1 AAAAAATATTAATAAAATATAAATAAAAA
7594880 ATCATTTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 10 0.37
31 17 0.63
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (30 bp):
AAAAAATATTAATAAAATATAAATAAAAAT
Found at i:7594869 original size:24 final size:23
Alignment explanation
Indices: 7594837--7594881 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
7594827 ATTAATAAAA
7594837 TAATAAATAAAAATAAAAAATAT
1 TAATAAATAAAAATAAAAAATAT
* *
7594860 TAATATAATATATATAAAAAAT
1 TAATA-AATAAAAATAAAAAAT
7594882 CATTTTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (23 bp):
TAATAAATAAAAATAAAAAATAT
Found at i:7594880 original size:31 final size:30
Alignment explanation
Indices: 7594811--7594881 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 30
7594801 ACAAAAAAAC
*
7594811 TAAATAAAGAAAAAATATTAATAAAATAATA
1 TAAA-AAATAAAAAATATTAATAAAATAATA
* *
7594842 AATAAAAATAAAAAATATTAATATAATATATA
1 TA-AAAAATAAAAAATATTAATAAAATA-ATA
7594874 TAAAAAAT
1 TAAAAAAT
7594882 CATTTTTAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
31 28 0.82
32 6 0.18
ACGTcount: A:0.70, C:0.00, G:0.01, T:0.28
Consensus pattern (30 bp):
TAAAAAATAAAAAATATTAATAAAATAATA
Found at i:7594969 original size:33 final size:33
Alignment explanation
Indices: 7594914--7595159 Score: 152
Period size: 37 Copynumber: 7.0 Consensus size: 33
7594904 ATATGCTTTA
* * *
7594914 AAAAAT-TGTTTCCAAACCATATAATACATATAA
1 AAAAATGT-TTTCAAAACTATATAATACATATAT
* * *
7594947 AAAAATGTTTTCAAAACTATATAATATATTTTT
1 AAAAATGTTTTCAAAACTATATAATACATATAT
* * * *
7594980 AAAAATATTTTCAAAACTATATATTATATATTTT
1 AAAAATGTTTTCAAAACTATATAATACATA-TAT
* * * * *
7595014 CAAAATGTTTTAAAAAACTATACATTAAATATATTTT
1 AAAAATGTTTT-CAAAACTATATAATACATATA---T
*
7595051 CAAAATGTTTTCAAAAGCTATATAATACATATATTTT
1 AAAAATGTTTTCAAAA-CTATATAATACATATA---T
* * *
7595088 CAAAAATGTTTTCAAAACTATATATTATATAAGTTTT
1 -AAAAATGTTTTCAAAACTATATAATACAT-A--TAT
* * *
7595125 CAAAATGTTTTCAAAAACTATATATTATATATAT
1 AAAAATGTTTTC-AAAACTATATAATACATATAT
7595159 A
1 A
7595160 TTTTTTAAAA
Statistics
Matches: 175, Mismatches: 26, Indels: 23
0.78 0.12 0.10
Matches are distributed among these distances:
33 52 0.30
34 16 0.09
35 16 0.09
36 16 0.09
37 58 0.33
38 16 0.09
40 1 0.01
ACGTcount: A:0.47, C:0.09, G:0.03, T:0.41
Consensus pattern (33 bp):
AAAAATGTTTTCAAAACTATATAATACATATAT
Found at i:7595050 original size:37 final size:37
Alignment explanation
Indices: 7594948--7595277 Score: 345
Period size: 37 Copynumber: 8.9 Consensus size: 37
7594938 TACATATAAA
* *
7594948 AAAATGTTTTC-AAAACTATATA--ATATAT-TTTTA
1 AAAATGTTTTCAAAAACTATATATTAAATATATTTTC
*
7594981 AAAATATTTTC-AAAACTATATATT--ATATATTTTC
1 AAAATGTTTTCAAAAACTATATATTAAATATATTTTC
* *
7595015 AAAATGTTTTAAAAAACTATACATTAAATATATTTTC
1 AAAATGTTTTCAAAAACTATATATTAAATATATTTTC
* * *
7595052 AAAATGTTTTCAAAAGCTATATAATACATATATTTTC
1 AAAATGTTTTCAAAAACTATATATTAAATATATTTTC
*
7595089 AAAAATGTTTTC-AAAACTATATATTATATA-AGTTTTC
1 -AAAATGTTTTCAAAAACTATATATTAAATATA-TTTTC
*
7595126 AAAATGTTTTCAAAAACTATATATTATATATATATTTTTT
1 AAAATGTTTTCAAAAACTATATATTA-A-ATATA-TTTTC
*
7595166 AAAATGTTTTTTTAAAAACTATATATTATATATATATTTTC
1 AAAATG--TTTTCAAAAACTATATATTA-A-ATATATTTTC
** * * *
7595207 AAAATGTTTTTTTAAAAGTATATATTATATATGTTTTC
1 AAAATG-TTTTCAAAAACTATATATTAAATATATTTTC
* *
7595245 AAAATGTTTTCAAAAACTAGATATTATATATAT
1 AAAATGTTTTCAAAAACTATATATTAAATATAT
7595278 ATATATATAT
Statistics
Matches: 256, Mismatches: 27, Indels: 24
0.83 0.09 0.08
Matches are distributed among these distances:
33 25 0.10
34 13 0.05
35 12 0.05
36 12 0.05
37 98 0.38
38 26 0.10
39 3 0.01
40 30 0.12
41 10 0.04
42 27 0.11
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.46
Consensus pattern (37 bp):
AAAATGTTTTCAAAAACTATATATTAAATATATTTTC
Found at i:7604057 original size:37 final size:37
Alignment explanation
Indices: 7604016--7604125 Score: 132
Period size: 37 Copynumber: 3.0 Consensus size: 37
7604006 TTTTCCATCA
*
7604016 ACAATAGCATCTTTGAAAGAATCTCTTATAGACCTAC
1 ACAATAACATCTTTGAAAGAATCTCTTATAGACCTAC
* * *
7604053 ACAATAACAACTTGGAAACAATCTCTTATAGACCTAC
1 ACAATAACATCTTTGAAAGAATCTCTTATAGACCTAC
* * * *
7604090 ACATTAACATC-TTGGAAGAAATCTCTTGTAGGCCTA
1 ACAATAACATCTTTGAAAG-AATCTCTTATAGACCTA
7604126 TACGCAATTG
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
36 4 0.07
37 57 0.93
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.28
Consensus pattern (37 bp):
ACAATAACATCTTTGAAAGAATCTCTTATAGACCTAC
Found at i:7608593 original size:30 final size:30
Alignment explanation
Indices: 7608559--7608646 Score: 106
Period size: 30 Copynumber: 2.9 Consensus size: 30
7608549 TTTATTTGCT
*
7608559 ATTTTAGGCCTTTAAGTTTCTATTTTTTCA
1 ATTTTAGTCCTTTAAGTTTCTATTTTTTCA
* ** *
7608589 ATTTTAGTCCTTTAACTTTCTGA-TTTAGCT
1 ATTTTAGTCCTTTAAGTTTCT-ATTTTTTCA
*
7608619 ATTTTAGTTCTTTAAGTTTCTATTTTTT
1 ATTTTAGTCCTTTAAGTTTCTATTTTTT
7608647 GTTATTTTGG
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
29 1 0.02
30 45 0.96
31 1 0.02
ACGTcount: A:0.19, C:0.12, G:0.09, T:0.59
Consensus pattern (30 bp):
ATTTTAGTCCTTTAAGTTTCTATTTTTTCA
Found at i:7610524 original size:20 final size:20
Alignment explanation
Indices: 7610499--7610539 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
7610489 TTTGTATACC
7610499 CTATTCGTAGGGTATCAATA
1 CTATTCGTAGGGTATCAATA
*
7610519 CTATTCGTTGGGTATCAATA
1 CTATTCGTAGGGTATCAATA
7610539 C
1 C
7610540 CCAAGGGTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.37
Consensus pattern (20 bp):
CTATTCGTAGGGTATCAATA
Found at i:7612857 original size:19 final size:19
Alignment explanation
Indices: 7612807--7612857 Score: 84
Period size: 19 Copynumber: 2.7 Consensus size: 19
7612797 AATCAAATTG
* *
7612807 GGGTATCGATACCGTGGAA
1 GGGTATCAATACTGTGGAA
7612826 GGGTATCAATACTGTGGAA
1 GGGTATCAATACTGTGGAA
7612845 GGGTATCAATACT
1 GGGTATCAATACT
7612858 ACAAGCATAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.25
Consensus pattern (19 bp):
GGGTATCAATACTGTGGAA
Found at i:7613276 original size:2 final size:2
Alignment explanation
Indices: 7613227--7613259 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
7613217 TATATATGTA
*
7613227 TG TG TG TG TG TG TG TG TG TG TA TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
7613260 TGACATGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.03, C:0.00, G:0.45, T:0.52
Consensus pattern (2 bp):
TG
Found at i:7613617 original size:17 final size:18
Alignment explanation
Indices: 7613595--7613637 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
7613585 TTAGGAGAAT
7613595 TGAACATAAG-AATGATA
1 TGAACATAAGTAATGATA
7613612 TGAACATAAGTAATGATA
1 TGAACATAAGTAATGATA
*
7613630 CGAACATA
1 TGAACATA
7613638 TAAGATAAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 10 0.42
18 14 0.58
ACGTcount: A:0.51, C:0.09, G:0.16, T:0.23
Consensus pattern (18 bp):
TGAACATAAGTAATGATA
Found at i:7613701 original size:2 final size:2
Alignment explanation
Indices: 7613694--7613727 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7613684 ACATATGGAT
7613694 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7613728 GCCATATGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7614586 original size:23 final size:23
Alignment explanation
Indices: 7614541--7614603 Score: 85
Period size: 23 Copynumber: 2.8 Consensus size: 23
7614531 ATATGTGTTA
*
7614541 TATATGGTCATTCGAGACA--TC
1 TATATGGTCATTCGGGACATTTC
* *
7614562 TATATGGTCCTTTGGGACATTTC
1 TATATGGTCATTCGGGACATTTC
7614585 TATATGGTCATTCGGGACA
1 TATATGGTCATTCGGGACA
7614604 AATTCTACGT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
21 16 0.46
23 19 0.54
ACGTcount: A:0.24, C:0.17, G:0.22, T:0.37
Consensus pattern (23 bp):
TATATGGTCATTCGGGACATTTC
Found at i:7618478 original size:38 final size:37
Alignment explanation
Indices: 7618399--7618479 Score: 90
Period size: 37 Copynumber: 2.2 Consensus size: 37
7618389 TTCCTTCATT
* **
7618399 TTTTTTTGCTATTTGAAAAAATGAACATTTTGTTCTT
1 TTTTTTTGCTATTCGAAAAAATGAACATTTTGTTCAC
* * * *
7618436 TTTTTTTGCTGTTCGAAACAATGAACAATTTTTTTGAC
1 TTTTTTTGCTATTCGAAAAAATGAAC-ATTTTGTTCAC
7618474 TTTTTT
1 TTTTTT
7618480 GTGTGGAACA
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
37 23 0.64
38 13 0.36
ACGTcount: A:0.25, C:0.10, G:0.11, T:0.54
Consensus pattern (37 bp):
TTTTTTTGCTATTCGAAAAAATGAACATTTTGTTCAC
Found at i:7620913 original size:18 final size:18
Alignment explanation
Indices: 7620890--7620926 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
7620880 GGGCGAGGCA
7620890 ACGAGCCAAGGCTGTGCG
1 ACGAGCCAAGGCTGTGCG
* *
7620908 ACGAGCGAAGGTTGTGCG
1 ACGAGCCAAGGCTGTGCG
7620926 A
1 A
7620927 TGAGTGGTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.24, C:0.22, G:0.41, T:0.14
Consensus pattern (18 bp):
ACGAGCCAAGGCTGTGCG
Found at i:7625472 original size:21 final size:21
Alignment explanation
Indices: 7625440--7625549 Score: 105
Period size: 21 Copynumber: 5.2 Consensus size: 21
7625430 GCTTTGGAAT
*
7625440 TTTTCATGGGATGTAACCAGC
1 TTTTCATAGGATGTAACCAGC
* * * *
7625461 TTTTCCTAGGATGCAACTAGT
1 TTTTCATAGGATGTAACCAGC
*
7625482 TTTTCATGGGATGTAACCAGC
1 TTTTCATAGGATGTAACCAGC
* * *
7625503 TTTTTC-TAGGATGCAACTAGT
1 -TTTTCATAGGATGTAACCAGC
* *
7625524 TTTTCATGGGATGTAACCATC
1 TTTTCATAGGATGTAACCAGC
7625545 TTTTC
1 TTTTC
7625550 TTGTGAAATT
Statistics
Matches: 68, Mismatches: 19, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
20 5 0.07
21 58 0.85
22 5 0.07
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.39
Consensus pattern (21 bp):
TTTTCATAGGATGTAACCAGC
Found at i:7625498 original size:42 final size:42
Alignment explanation
Indices: 7625439--7625549 Score: 204
Period size: 42 Copynumber: 2.6 Consensus size: 42
7625429 GGCTTTGGAA
7625439 TTTTTCATGGGATGTAACCAGCTTTTCCTAGGATGCAACTAG
1 TTTTTCATGGGATGTAACCAGCTTTTCCTAGGATGCAACTAG
*
7625481 TTTTTCATGGGATGTAACCAGCTTTTTCTAGGATGCAACTAG
1 TTTTTCATGGGATGTAACCAGCTTTTCCTAGGATGCAACTAG
*
7625523 TTTTTCATGGGATGTAACCATCTTTTC
1 TTTTTCATGGGATGTAACCAGCTTTTC
7625550 TTGTGAAATT
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 66 1.00
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.40
Consensus pattern (42 bp):
TTTTTCATGGGATGTAACCAGCTTTTCCTAGGATGCAACTAG
Found at i:7626946 original size:12 final size:12
Alignment explanation
Indices: 7626929--7626953 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7626919 GATAAGAATA
7626929 AAATAATTAAAT
1 AAATAATTAAAT
7626941 AAATAATTAAAT
1 AAATAATTAAAT
7626953 A
1 A
7626954 TAAATAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAATAATTAAAT
Found at i:7630000 original size:59 final size:59
Alignment explanation
Indices: 7629928--7630116 Score: 245
Period size: 59 Copynumber: 3.2 Consensus size: 59
7629918 TATATACTTA
7629928 GGATTGCACTAAAGGATACCTAGTGCATATGGTGGGCACGACCTTATGTGTCATATTCG
1 GGATTGCACTAAAGGATACCTAGTGCATATGGTGGGCACGACCTTATGTGTCATATTCG
* * *
7629987 GGATTGCACTAAAGGATACCTAGTGCATATGTTGGGCACGAACATATGTGTCATATTCG
1 GGATTGCACTAAAGGATACCTAGTGCATATGGTGGGCACGACCTTATGTGTCATATTCG
* * * * * * * * *
7630046 GGATCGTACTAAAGGATACCTAGTAC-TGATGGTGGGAAGGACATTATGTGTCACACTAG
1 GGATTGCACTAAAGGATACCTAGTGCAT-ATGGTGGGCACGACCTTATGTGTCATATTCG
7630105 GGATTAGCACTA
1 GGATT-GCACTA
7630117 TAGTGCATAT
Statistics
Matches: 111, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
58 1 0.01
59 105 0.95
60 5 0.05
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.28
Consensus pattern (59 bp):
GGATTGCACTAAAGGATACCTAGTGCATATGGTGGGCACGACCTTATGTGTCATATTCG
Found at i:7630641 original size:33 final size:33
Alignment explanation
Indices: 7630604--7630669 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
7630594 TAAATTTATC
*
7630604 ATATGAAATAACATTATTATATTAAGTTATATT
1 ATATGAAATAACATTACTATATTAAGTTATATT
7630637 ATATGAAATAACATTACTATATTAAGTTATATT
1 ATATGAAATAACATTACTATATTAAGTTATATT
7630670 TTATATATTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.45, C:0.05, G:0.06, T:0.44
Consensus pattern (33 bp):
ATATGAAATAACATTACTATATTAAGTTATATT
Found at i:7647769 original size:14 final size:14
Alignment explanation
Indices: 7647750--7647777 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7647740 TCGTGAGTCA
7647750 TCCTTGTTAGTTTG
1 TCCTTGTTAGTTTG
7647764 TCCTTGTTAGTTTG
1 TCCTTGTTAGTTTG
7647778 AAAGATGACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.14, G:0.21, T:0.57
Consensus pattern (14 bp):
TCCTTGTTAGTTTG
Found at i:7652462 original size:12 final size:12
Alignment explanation
Indices: 7652445--7652469 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7652435 TTTGTTTCTC
7652445 ACGAACACAACT
1 ACGAACACAACT
7652457 ACGAACACAACT
1 ACGAACACAACT
7652469 A
1 A
7652470 TATCGCTGAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.32, G:0.08, T:0.08
Consensus pattern (12 bp):
ACGAACACAACT
Found at i:7652887 original size:4 final size:4
Alignment explanation
Indices: 7652878--7652902 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
7652868 AATGATTAGT
7652878 ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA A
7652903 AATATAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:7653454 original size:18 final size:18
Alignment explanation
Indices: 7653433--7653475 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
7653423 ATTGTTTTAA
* *
7653433 AAATAAAGGATAAGAATT
1 AAATAAAAGAAAAGAATT
*
7653451 AAATAAAAGAAAATAATT
1 AAATAAAAGAAAAGAATT
7653469 AAATAAA
1 AAATAAA
7653476 TAAATTTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (18 bp):
AAATAAAAGAAAAGAATT
Found at i:7660058 original size:106 final size:106
Alignment explanation
Indices: 7659862--7660217 Score: 432
Period size: 106 Copynumber: 3.3 Consensus size: 106
7659852 TTTTATAGCT
* * * * *
7659862 AATTTTAACTTCACAGTGAAGGATATTGGACTCAAGACAACACAAGCTCAACTTCACAACGAAGG
1 AATTTCAACTTCACAGCGAAGGATATTAGACTCAAGACAGCACAAGCTCAACTTCACAGCGAAGG
* * **
7659927 GGCGACTG-GTTGTCGACAAGCAACTTCT-CAGTTTCAGAGCC
66 GGCGA-TGACTT-TCAACAAATAACTTCTCCAGTTTCAGAGCC
7659968 AATTTCAACTTCACAGCGAAGGATATTAGACTCAAGACAGCACAAGCTCAACTTCACAGCGAAGG
1 AATTTCAACTTCACAGCGAAGGATATTAGACTCAAGACAGCACAAGCTCAACTTCACAGCGAAGG
*
7660033 GGCAGATGACTTTCAACAAATAACTTCTCCAGTTTCATTCAGAGTC
66 GGC-GATGACTTTCAACAAATAACTTCTCCAG--T--TTCAGAGCC
* * * *
7660079 AATTTCAACTTTATAGCAAAGGATATTAGACTCAAGACAGAACAAGCTCAACTTCACAGCGAAGG
1 AATTTCAACTTCACAGCGAAGGATATTAGACTCAAGACAGCACAAGCTCAACTTCACAGCGAAGG
* * *
7660144 GGCGGATGACTGTCAACAAATAA-TTTTCCAGTTCCAGAGCC
66 GGC-GATGACTTTCAACAAATAACTTCTCCAGTTTCAGAGCC
* *
7660185 AATTTCAACTTCACGGC-AGAGGATATTGGACTC
1 AATTTCAACTTCACAGCGA-AGGATATTAGACTC
7660218 GGAGCAATAC
Statistics
Matches: 219, Mismatches: 23, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
105 1 0.00
106 112 0.51
107 7 0.03
108 1 0.00
109 1 0.00
110 7 0.03
111 90 0.41
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (106 bp):
AATTTCAACTTCACAGCGAAGGATATTAGACTCAAGACAGCACAAGCTCAACTTCACAGCGAAGG
GGCGATGACTTTCAACAAATAACTTCTCCAGTTTCAGAGCC
Found at i:7663691 original size:69 final size:69
Alignment explanation
Indices: 7663606--7663744 Score: 233
Period size: 69 Copynumber: 2.0 Consensus size: 69
7663596 AAAACTAACA
* * * *
7663606 ACTAATGATCAATTTAATGATAAAATAATAACTAAATAAAGCACCTATTAAATTCCCCCTCACTT
1 ACTAAGGAGCAATTTAAAGATAAAATAATAACTAAATAAAGCACCTATCAAATTCCCCCTCACTT
7663671 ATTC
66 ATTC
*
7663675 ACTAAGGAGCAATTTAAAGATAACATAATAACTAAATAAAGCACCTATCAAATTCCCCCTCACTT
1 ACTAAGGAGCAATTTAAAGATAAAATAATAACTAAATAAAGCACCTATCAAATTCCCCCTCACTT
7663740 ATTC
66 ATTC
7663744 A
1 A
7663745 ATGATTGTCC
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
69 65 1.00
ACGTcount: A:0.44, C:0.22, G:0.06, T:0.29
Consensus pattern (69 bp):
ACTAAGGAGCAATTTAAAGATAAAATAATAACTAAATAAAGCACCTATCAAATTCCCCCTCACTT
ATTC
Found at i:7664384 original size:16 final size:16
Alignment explanation
Indices: 7664363--7664396 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7664353 AAAAAAAAAT
* *
7664363 AATAATAACATAATGA
1 AATAATAAAATAAAGA
7664379 AATAATAAAATAAAGA
1 AATAATAAAATAAAGA
7664395 AA
1 AA
7664397 ATACATCAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.71, C:0.03, G:0.06, T:0.21
Consensus pattern (16 bp):
AATAATAAAATAAAGA
Found at i:7681383 original size:27 final size:26
Alignment explanation
Indices: 7681331--7681384 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 26
7681321 CACATTATTT
*
7681331 TTTTTGGGAAAAAAGGGAATAGAATA
1 TTTTTGGGAAAAAAGGGAATAAAATA
7681357 TTTTTGGGAGAAAAAGGGAGA-AAAATA
1 TTTTTGGGA-AAAAAGGGA-ATAAAATA
7681384 T
1 T
7681385 AAAAGAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 9 0.36
27 15 0.60
28 1 0.04
ACGTcount: A:0.46, C:0.00, G:0.28, T:0.26
Consensus pattern (26 bp):
TTTTTGGGAAAAAAGGGAATAAAATA
Found at i:7681772 original size:18 final size:18
Alignment explanation
Indices: 7681749--7681786 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
7681739 TCACATCAAC
7681749 TTTTATTTATATTTATTA
1 TTTTATTTATATTTATTA
7681767 TTTTATTTATATTTATTA
1 TTTTATTTATATTTATTA
7681785 TT
1 TT
7681787 AAAATATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTATTTATATTTATTA
Found at i:7681919 original size:21 final size:20
Alignment explanation
Indices: 7681869--7681918 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 20
7681859 TTTTATATAT
7681869 TTTATTTTTATTTACTTTCA
1 TTTATTTTTATTTACTTTCA
*
7681889 TTTACCTTTTATTTA-TTATCA
1 TTTA-TTTTTATTTACTT-TCA
7681910 TTTATTTTT
1 TTTATTTTT
7681919 TTCCTTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 10 0.38
21 16 0.62
ACGTcount: A:0.20, C:0.10, G:0.00, T:0.70
Consensus pattern (20 bp):
TTTATTTTTATTTACTTTCA
Found at i:7690437 original size:17 final size:17
Alignment explanation
Indices: 7690404--7690437 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7690394 TTGAATATTT
* *
7690404 TGGATTGTTTGATTTTG
1 TGGATTGTTAGACTTTG
7690421 TGGATTGTTAGACTTTG
1 TGGATTGTTAGACTTTG
7690438 GATTTGTTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.03, G:0.29, T:0.53
Consensus pattern (17 bp):
TGGATTGTTAGACTTTG
Found at i:7698430 original size:23 final size:23
Alignment explanation
Indices: 7698400--7698452 Score: 106
Period size: 23 Copynumber: 2.3 Consensus size: 23
7698390 ATGCCCGACT
7698400 CGTTGACTTTGGTCATAGTTGAC
1 CGTTGACTTTGGTCATAGTTGAC
7698423 CGTTGACTTTGGTCATAGTTGAC
1 CGTTGACTTTGGTCATAGTTGAC
7698446 CGTTGAC
1 CGTTGAC
7698453 CAGTTATACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.17, C:0.19, G:0.26, T:0.38
Consensus pattern (23 bp):
CGTTGACTTTGGTCATAGTTGAC
Found at i:7710135 original size:19 final size:19
Alignment explanation
Indices: 7710111--7710147 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
7710101 ATGACCAACA
*
7710111 AAATCGCAATGCGATCTCT
1 AAATCGCAACGCGATCTCT
7710130 AAATCGCAACGCGATCTC
1 AAATCGCAACGCGATCTC
7710148 CAGTATCACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (19 bp):
AAATCGCAACGCGATCTCT
Found at i:7710293 original size:19 final size:19
Alignment explanation
Indices: 7710269--7710328 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 19
7710259 ATGCGATAAT
7710269 ATTCGTTGCGATTTTCCAA
1 ATTCGTTGCGATTTTCCAA
* ** *
7710288 ATTCGTCGCGATAGTCGAA
1 ATTCGTTGCGATTTTCCAA
*
7710307 GTTCGCGTTGCGATTTTCCAA
1 ATT--CGTTGCGATTTTCCAA
7710328 A
1 A
7710329 ATCGCAACGG
Statistics
Matches: 29, Mismatches: 10, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
19 17 0.59
21 12 0.41
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.35
Consensus pattern (19 bp):
ATTCGTTGCGATTTTCCAA
Found at i:7710679 original size:65 final size:65
Alignment explanation
Indices: 7710575--7710724 Score: 291
Period size: 65 Copynumber: 2.3 Consensus size: 65
7710565 ATTGCCAACA
*
7710575 CTTGGGAATCTTTTACACTATCGCAACACATTCTTTATTGTTTCAAACTAAGATCTTACAAATGG
1 CTTGGGAATCTTTTACACTATCACAACACATTCTTTATTGTTTCAAACTAAGATCTTACAAATGG
7710640 CTTGGGAATCTTTTACACTATCACAACACATTCTTTATTGTTTCAAACTAAGATCTTACAAATGG
1 CTTGGGAATCTTTTACACTATCACAACACATTCTTTATTGTTTCAAACTAAGATCTTACAAATGG
7710705 CTTGGGAATCTTTTACACTA
1 CTTGGGAATCTTTTACACTA
7710725 AGAATCTATA
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
65 84 1.00
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (65 bp):
CTTGGGAATCTTTTACACTATCACAACACATTCTTTATTGTTTCAAACTAAGATCTTACAAATGG
Found at i:7711425 original size:6 final size:6
Alignment explanation
Indices: 7711414--7711440 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
7711404 TCTCGTCTCG
7711414 GGTCGT GGTCGT GGTCGT GGTCGT GGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGT
7711441 AATAGGTGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.15, G:0.52, T:0.33
Consensus pattern (6 bp):
GGTCGT
Found at i:7711543 original size:21 final size:20
Alignment explanation
Indices: 7711517--7711586 Score: 70
Period size: 21 Copynumber: 3.5 Consensus size: 20
7711507 CAATAGGAAA
7711517 ATCGCAACGGGAACTTCGACT
1 ATCGCAAC-GGAACTTCGACT
* * * **
7711538 ATCGCAAC-AAATTTGGAAA
1 ATCGCAACGGAACTTCGACT
7711557 ATCGCAACGCGAACTTCGACT
1 ATCGCAACG-GAACTTCGACT
7711578 ATCGCAACG
1 ATCGCAACG
7711587 AATTTGGACT
Statistics
Matches: 37, Mismatches: 10, Indels: 4
0.73 0.20 0.08
Matches are distributed among these distances:
19 14 0.38
21 23 0.62
ACGTcount: A:0.34, C:0.27, G:0.20, T:0.19
Consensus pattern (20 bp):
ATCGCAACGGAACTTCGACT
Found at i:7711558 original size:40 final size:40
Alignment explanation
Indices: 7711512--7711594 Score: 148
Period size: 40 Copynumber: 2.1 Consensus size: 40
7711502 AAATGCAATA
*
7711512 GGAAAATCGCAACGGGAACTTCGACTATCGCAACAAATTT
1 GGAAAATCGCAACGCGAACTTCGACTATCGCAACAAATTT
*
7711552 GGAAAATCGCAACGCGAACTTCGACTATCGCAACGAATTT
1 GGAAAATCGCAACGCGAACTTCGACTATCGCAACAAATTT
7711592 GGA
1 GGA
7711595 CTAACGTAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.19
Consensus pattern (40 bp):
GGAAAATCGCAACGCGAACTTCGACTATCGCAACAAATTT
Found at i:7711596 original size:19 final size:19
Alignment explanation
Indices: 7711534--7711597 Score: 65
Period size: 19 Copynumber: 3.3 Consensus size: 19
7711524 CGGGAACTTC
*
7711534 GACTATCGCAACAAATTTG
1 GACTATCGCAACGAATTTG
** * *
7711553 GAAAATCGCAACGCGAACTTC
1 GACTATCGCAA--CGAATTTG
7711574 GACTATCGCAACGAATTTG
1 GACTATCGCAACGAATTTG
7711593 GACTA
1 GACTA
7711598 ACGTAAATTT
Statistics
Matches: 34, Mismatches: 9, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
19 20 0.59
21 14 0.41
ACGTcount: A:0.36, C:0.23, G:0.19, T:0.22
Consensus pattern (19 bp):
GACTATCGCAACGAATTTG
Found at i:7711733 original size:19 final size:19
Alignment explanation
Indices: 7711709--7711745 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
7711699 TATGATACTG
*
7711709 GAGATCGCGTTGCGATTTA
1 GAGATCGCATTGCGATTTA
7711728 GAGATCGCATTGCGATTT
1 GAGATCGCATTGCGATTT
7711746 TGTTGGTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (19 bp):
GAGATCGCATTGCGATTTA
Found at i:7726947 original size:11 final size:11
Alignment explanation
Indices: 7726931--7726964 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
7726921 CAACACCTTG
7726931 CATTGCATTTA
1 CATTGCATTTA
**
7726942 CATTGCATCAA
1 CATTGCATTTA
7726953 CATTGCATTTA
1 CATTGCATTTA
7726964 C
1 C
7726965 TTTTTCGCAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (11 bp):
CATTGCATTTA
Found at i:7730001 original size:20 final size:18
Alignment explanation
Indices: 7729976--7730086 Score: 91
Period size: 20 Copynumber: 5.8 Consensus size: 18
7729966 ACACTCGAAA
7729976 AAAAAAGAAAGGAAAAAAG
1 AAAAAAGAAA-GAAAAAAG
*
7729995 CAAAAAA-AATTGAAAGAAAG
1 -AAAAAAGAA-AGAAA-AAAG
*
7730015 AAAAAAGAATTAGAAACAAG
1 AAAAAAGAA--AGAAAAAAG
*
7730035 AAAAAAGAAAAAGAAAAAG
1 AAAAAAGAAAGA-AAAAAG
7730054 AAAAAAAGAAA-AAAAAAG
1 -AAAAAAGAAAGAAAAAAG
*
7730072 AGAAAGAGAAAGAAA
1 A-AAAAAGAAAGAAA
7730087 GAATAGATAA
Statistics
Matches: 77, Mismatches: 6, Indels: 17
0.77 0.06 0.17
Matches are distributed among these distances:
17 1 0.01
18 16 0.21
19 21 0.27
20 34 0.44
21 5 0.06
ACGTcount: A:0.77, C:0.02, G:0.17, T:0.04
Consensus pattern (18 bp):
AAAAAAGAAAGAAAAAAG
Found at i:7730045 original size:6 final size:6
Alignment explanation
Indices: 7730007--7730086 Score: 65
Period size: 6 Copynumber: 13.2 Consensus size: 6
7729997 AAAAAAATTG
* **
7730007 AAAGAA AGA-AA AAAGAA TTAGAA ACAAGAAA AAAGAA AAAGAA AAAGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA A-AAG-AA AAAGAA AAAGAA AAAGAA
* * *
7730056 AAA-AA GAAAAAA AAAGAG AAAGAG AAAGAA A
1 AAAGAA -AAAGAA AAAGAA AAAGAA AAAGAA A
7730087 GAATAGATAA
Statistics
Matches: 60, Mismatches: 9, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
5 6 0.10
6 44 0.73
7 7 0.12
8 3 0.05
ACGTcount: A:0.79, C:0.01, G:0.17, T:0.03
Consensus pattern (6 bp):
AAAGAA
Found at i:7730055 original size:26 final size:26
Alignment explanation
Indices: 7729987--7730086 Score: 82
Period size: 24 Copynumber: 3.9 Consensus size: 26
7729977 AAAAAGAAAG
**
7729987 GAAAAAAGCAAAAA-AAATTGAAAGAAA
1 GAAAAAAG-AAAAAGAAAAAGAAA-AAA
**
7730014 GAAAAAAGAATTAGAAACAAGAAAAAA
1 GAAAAAAGAAAAAGAAA-AAGAAAAAA
*
7730041 G-AAAAAGAAAAAGAAAAA-AAGAAA
1 GAAAAAAGAAAAAGAAAAAGAAAAAA
* *
7730065 -AAAAAAGAGAAAGAGAAAGAAA
1 GAAAAAAGAAAAAGAAAAAGAAA
7730087 GAATAGATAA
Statistics
Matches: 59, Mismatches: 10, Indels: 10
0.75 0.13 0.13
Matches are distributed among these distances:
24 20 0.34
25 4 0.07
26 16 0.27
27 15 0.25
28 4 0.07
ACGTcount: A:0.77, C:0.02, G:0.17, T:0.04
Consensus pattern (26 bp):
GAAAAAAGAAAAAGAAAAAGAAAAAA
Found at i:7730071 original size:30 final size:32
Alignment explanation
Indices: 7730035--7730114 Score: 92
Period size: 30 Copynumber: 2.6 Consensus size: 32
7730025 TAGAAACAAG
7730035 AAAAAAGAAAAAGAAAAAGAAA-AAAAGA-AA
1 AAAAAAGAAAAAGAAAAAGAAAGAAAAGATAA
* * *
7730065 AAAAAAGAGAAAGAGAAAGAAAGAATAGATAA
1 AAAAAAGAAAAAGAAAAAGAAAGAAAAGATAA
* * *
7730097 TAAAAAGAATAAGGAAAA
1 AAAAAAGAAAAAGAAAAA
7730115 TTGAAAAGGG
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
30 20 0.50
31 5 0.12
32 15 0.38
ACGTcount: A:0.78, C:0.00, G:0.17, T:0.05
Consensus pattern (32 bp):
AAAAAAGAAAAAGAAAAAGAAAGAAAAGATAA
Found at i:7730087 original size:26 final size:25
Alignment explanation
Indices: 7729979--7730089 Score: 82
Period size: 26 Copynumber: 4.2 Consensus size: 25
7729969 CTCGAAAAAA
*
7729979 AAAGAAAGGAAAAAAGCAAAAA-AAATTG
1 AAAGAAA-AAAAAAAG-AAAAAGAAA--G
* **
7730007 AAAGAAAGAAAAAAGAATTAGAAA-
1 AAAGAAAAAAAAAAGAAAAAGAAAG
* *
7730031 CAAGAAAAAAGAAAAAGAAAAAGAAAA
1 AAAG-AAAAA-AAAAAGAAAAAGAAAG
*
7730058 AAAGAAAAAAAAAGAGAAAGAGAAAG
1 AAAGAAAAAAAAA-AGAAAAAGAAAG
7730084 AAAGAA
1 AAAGAA
7730090 TAGATAATAA
Statistics
Matches: 69, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
24 3 0.04
25 8 0.12
26 37 0.54
27 14 0.20
28 7 0.10
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (25 bp):
AAAGAAAAAAAAAAGAAAAAGAAAG
Found at i:7732018 original size:112 final size:111
Alignment explanation
Indices: 7731782--7732307 Score: 633
Period size: 112 Copynumber: 4.7 Consensus size: 111
7731772 TTTAATTTGT
* * * *
7731782 AGATTTGATATTCCCAGAGTGACAGC-GAAACAAGTCTGCCCTGATTCAATGCATCAACTCCCCA
1 AGATTTGATATTCCCTGAGTGACAGCAG-AACAAGTCTACCCCGATTCAATGGATCAACTCCCCA
* * * ** *
7731846 TATCTGATTTTCCCTTTAGAAGAAGCAGAATATATCATTTTCTTCCA
65 GATCTGATATTCCCTTTAGAAGAAGCAGAACATATCCCTCTCTTCCA
* * *
7731893 AGATTTGATATTCCCTGAGTGACATCAGAACAAGTCTACCCCGATTTAATAGATCAACTCCCTCA
1 AGATTTGATATTCCCTGAGTGACAGCAGAACAAGTCTACCCCGATTCAATGGATCAACTCCC-CA
* * * *
7731958 GATCTGATATTCCTTTTAGAAGAAGCATAACAGATCCCTATCTTCCA
65 GATCTGATATTCCCTTTAGAAGAAGCAGAACATATCCCTCTCTTCCA
* * *
7732005 ATATTTGATATTCCCTGAGTGATAGCGGGAACAAGT-TAGCCCCGATTCAATGGATCAACTCCCC
1 AGATTTGATATTCCCTGAGTGACAGC-AGAACAAGTCTA-CCCCGATTCAATGGATCAACT-CCC
* * *
7732069 CAAATCTGATATTCCCTTTAGAAGAAGCGGAACATATCCCTCTCTTCTA
63 CAGATCTGATATTCCCTTTAGAAGAAGCAGAACATATCCCTCTCTTCCA
* *
7732118 AGATTTGAAATTTCCTGAGTGACAGCAGAACAAGTCTACCCCGATTCAATGGATCAACTCCCCAA
1 AGATTTGATATTCCCTGAGTGACAGCAGAACAAGTCTACCCCGATTCAATGGATCAACTCCCC-A
* * * * * *
7732183 GATATGATACTCCGTCTAGAAGAAGTAGAACATATCCCTCTCTTTCA
65 GATCTGATATTCCCTTTAGAAGAAGCAGAACATATCCCTCTCTTCCA
* * * * * *
7732230 AGATTTGATATTTCCTGAGTGATAGCGGAACAAGTCTGCACCGATTCAATGGATCAACATCTCCA
1 AGATTTGATATTCCCTGAGTGACAGCAGAACAAGTCTACCCCGATTCAATGGATCAAC-TCCCCA
*
7732295 TATCTGATATTCC
65 GATCTGATATTCC
7732308 TTGAGTGACA
Statistics
Matches: 355, Mismatches: 52, Indels: 15
0.84 0.12 0.04
Matches are distributed among these distances:
111 57 0.16
112 198 0.56
113 97 0.27
114 3 0.01
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.29
Consensus pattern (111 bp):
AGATTTGATATTCCCTGAGTGACAGCAGAACAAGTCTACCCCGATTCAATGGATCAACTCCCCAG
ATCTGATATTCCCTTTAGAAGAAGCAGAACATATCCCTCTCTTCCA
Found at i:7732205 original size:225 final size:223
Alignment explanation
Indices: 7731782--7732332 Score: 714
Period size: 225 Copynumber: 2.5 Consensus size: 223
7731772 TTTAATTTGT
* * * * *
7731782 AGATTTGATATTCCCAGAGTGACAGCGAAACAAGTCTGCCCTGATTCAATGCATCAACTCCCCAT
1 AGATTTGATATTCCCTGAGTGATAGCGGAACAAGTCTGCCCCGATTCAATGGATCAACTCCCCAT
* * * ** * *
7731847 ATCTGATTTTCCCTTTAGAAGAAGCAGAATATATCATTTTCTTCCAAGATTTGATATTCCCTGAG
66 ATCTGATATTCCCTTTAGAAGAAGCGGAACATATCCCTCTCTTCCAAGATTTGAAATTCCCTGAG
* * * * * *
7731912 TGACATCAGAACAAGTCTACCCCGATTTAATAGATCAACTCCCTCAGATCTGATATTCCTTTTAG
131 TGACAGCAGAACAAGTCTACCCCGATTCAATAGATCAACTCCCTCAGATATGATACTCCGTCTAG
*
7731977 AAGAAGCATAACAGATCCCTATCTTCCA
196 AAGAAGCAGAACAGATCCCTATCTTCCA
*
7732005 ATATTTGATATTCCCTGAGTGATAGCGGGAACAAGT-TAGCCCCGATTCAATGGATCAACTCCCC
1 AGATTTGATATTCCCTGAGTGATAGC-GGAACAAGTCT-GCCCCGATTCAATGGATCAACT-CCC
* * *
7732069 CAAATCTGATATTCCCTTTAGAAGAAGCGGAACATATCCCTCTCTTCTAAGATTTGAAATTTCCT
63 CATATCTGATATTCCCTTTAGAAGAAGCGGAACATATCCCTCTCTTCCAAGATTTGAAATTCCCT
*
7732134 GAGTGACAGCAGAACAAGTCTACCCCGATTCAATGGATCAACTCCC-CAAGATATGATACTCCGT
128 GAGTGACAGCAGAACAAGTCTACCCCGATTCAATAGATCAACTCCCTC-AGATATGATACTCCGT
* * * *
7732198 CTAGAAGAAGTAGAACATATCCCTCTCTTTCA
192 CTAGAAGAAGCAGAACAGATCCCTATCTTCCA
* * *
7732230 AGATTTGATATTTCCTGAGTGATAGCGGAACAAGTCTGCACCGATTCAATGGATCAACATCTCCA
1 AGATTTGATATTCCCTGAGTGATAGCGGAACAAGTCTGCCCCGATTCAATGGATCAAC-TCCCCA
* * *
7732295 TATCTGATATT-CCTTGAG-TGACAGCGGAACAGATCCCT
65 TATCTGATATTCCCTTTAGAAGA-AGCGGAACATATCCCT
7732333 TATCATATTT
Statistics
Matches: 285, Mismatches: 36, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
222 2 0.01
223 45 0.16
224 72 0.25
225 166 0.58
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (223 bp):
AGATTTGATATTCCCTGAGTGATAGCGGAACAAGTCTGCCCCGATTCAATGGATCAACTCCCCAT
ATCTGATATTCCCTTTAGAAGAAGCGGAACATATCCCTCTCTTCCAAGATTTGAAATTCCCTGAG
TGACAGCAGAACAAGTCTACCCCGATTCAATAGATCAACTCCCTCAGATATGATACTCCGTCTAG
AAGAAGCAGAACAGATCCCTATCTTCCA
Found at i:7734986 original size:131 final size:131
Alignment explanation
Indices: 7734812--7735047 Score: 373
Period size: 131 Copynumber: 1.8 Consensus size: 131
7734802 TTTTAGAAGG
* * * * * *
7734812 AATATTAATATATCTTTATTTCAATTGGGGTAATAAATTATTGTTTTAATGCACGATAGGTCATT
1 AATAGTAATATATATTTATTTCAATTGGAGTAATAAATGATTGTTTTAATGCACGAAAGATCATT
* *
7734877 TATTCTCGATTGAAAATCATTAGATATTATTATTTTCACTTGAAACGGTATTGAATTTTAAGATG
66 TATTCTCGATTGAAAATAATTAGATATTATCATTTTCACTTGAAACGGTATTGAATTTTAAGATG
7734942 A
131 A
*
7734943 AATAGTAATATATATTTATTTCAATTGGAGTATTAAATGATTGTTTTAATGCACGAAAGATCATT
1 AATAGTAATATATATTTATTTCAATTGGAGTAATAAATGATTGTTTTAATGCACGAAAGATCATT
* *
7735008 TATTCTCGATTGGAAATAATTAGATATTATCGTTTTCACT
66 TATTCTCGATTGAAAATAATTAGATATTATCATTTTCACT
7735048 CTTAAAATTA
Statistics
Matches: 94, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
131 94 1.00
ACGTcount: A:0.35, C:0.08, G:0.14, T:0.43
Consensus pattern (131 bp):
AATAGTAATATATATTTATTTCAATTGGAGTAATAAATGATTGTTTTAATGCACGAAAGATCATT
TATTCTCGATTGAAAATAATTAGATATTATCATTTTCACTTGAAACGGTATTGAATTTTAAGATG
A
Found at i:7737534 original size:31 final size:31
Alignment explanation
Indices: 7737499--7737558 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
7737489 TAGTTTTATG
* *
7737499 AATTATTTAAATTTCAGTATTGTAAAACTAA
1 AATTATTTAAATCTCAGTATTGCAAAACTAA
7737530 AATTATTTAAATCTCAGTATTGCAAAACT
1 AATTATTTAAATCTCAGTATTGCAAAACT
7737559 CTTTTTAGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (31 bp):
AATTATTTAAATCTCAGTATTGCAAAACTAA
Found at i:7746511 original size:33 final size:33
Alignment explanation
Indices: 7746471--7746554 Score: 123
Period size: 33 Copynumber: 2.5 Consensus size: 33
7746461 ATGTAGTTTA
7746471 TTTTTAAGTATTTGAATTTATAGAACTTGAAAG
1 TTTTTAAGTATTTGAATTTATAGAACTTGAAAG
* *
7746504 TTTTTAAGTATTTGAATTTATTGAACTTGGAAG
1 TTTTTAAGTATTTGAATTTATAGAACTTGAAAG
* * *
7746537 TATATAAGTATTTCAATT
1 TTTTTAAGTATTTGAATT
7746555 ATCGTAAACT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.35, C:0.04, G:0.14, T:0.48
Consensus pattern (33 bp):
TTTTTAAGTATTTGAATTTATAGAACTTGAAAG
Found at i:7763126 original size:11 final size:11
Alignment explanation
Indices: 7763096--7763150 Score: 65
Period size: 12 Copynumber: 4.7 Consensus size: 11
7763086 CTAATTCAAT
*
7763096 AAAAAGATAGAA
1 AAAAAGA-AGGA
7763108 AAATAAGAAGGA
1 AAA-AAGAAGGA
7763120 AAAAAGAAGGGA
1 AAAAAGAA-GGA
*
7763132 AAAAAGAGGGA
1 AAAAAGAAGGA
7763143 AAAAAGAA
1 AAAAAGAA
7763151 AAATATAGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
11 15 0.39
12 19 0.50
13 4 0.11
ACGTcount: A:0.71, C:0.00, G:0.25, T:0.04
Consensus pattern (11 bp):
AAAAAGAAGGA
Found at i:7763132 original size:12 final size:12
Alignment explanation
Indices: 7763107--7763150 Score: 65
Period size: 11 Copynumber: 3.8 Consensus size: 12
7763097 AAAAGATAGA
7763107 AAAATAAGAA-GG
1 AAAA-AAGAAGGG
7763119 AAAAAAGAAGGG
1 AAAAAAGAAGGG
7763131 AAAAAAG-AGGG
1 AAAAAAGAAGGG
7763142 AAAAAAGAA
1 AAAAAAGAA
7763151 AAATATAGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
11 16 0.53
12 14 0.47
ACGTcount: A:0.70, C:0.00, G:0.27, T:0.02
Consensus pattern (12 bp):
AAAAAAGAAGGG
Found at i:7763153 original size:7 final size:7
Alignment explanation
Indices: 7763141--7763248 Score: 81
Period size: 7 Copynumber: 14.1 Consensus size: 7
7763131 AAAAAAGAGG
7763141 GAAAAAA
1 GAAAAAA
7763148 GAAAAATATA
1 G-AAAA-A-A
7763158 GAAAATATA
1 GAAAA-A-A
*
7763167 GAAAATA
1 GAAAAAA
7763174 GAAAATATA
1 GAAAA-A-A
7763183 GAAAAGAAA
1 G-AAA-AAA
*
7763192 AAAAAAA
1 GAAAAAA
7763199 GAAAAAA
1 GAAAAAA
7763206 GAAAAAA
1 GAAAAAA
*
7763213 GAAAAGA
1 GAAAAAA
*
7763220 GGAAAAA
1 GAAAAAA
*
7763227 GGAAAAA
1 GAAAAAA
*
7763234 GGAAAAA
1 GAAAAAA
7763241 GAAAAAA
1 GAAAAAA
7763248 G
1 G
7763249 TAAGAGAAAA
Statistics
Matches: 86, Mismatches: 8, Indels: 14
0.80 0.07 0.13
Matches are distributed among these distances:
7 55 0.64
8 7 0.08
9 17 0.20
10 6 0.07
11 1 0.01
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.06
Consensus pattern (7 bp):
GAAAAAA
Found at i:7763162 original size:9 final size:9
Alignment explanation
Indices: 7763150--7763187 Score: 62
Period size: 9 Copynumber: 4.4 Consensus size: 9
7763140 GGAAAAAAGA
7763150 AAAATATAG
1 AAAATATAG
7763159 AAAATATAG
1 AAAATATAG
7763168 -AAA-ATAG
1 AAAATATAG
7763175 AAAATATAG
1 AAAATATAG
7763184 AAAA
1 AAAA
7763188 GAAAAAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
7 4 0.15
8 6 0.22
9 17 0.63
ACGTcount: A:0.71, C:0.00, G:0.11, T:0.18
Consensus pattern (9 bp):
AAAATATAG
Done.