Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008747.1 Hibiscus syriacus cultivar Beakdansim tig00111837_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12616935
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 31 of 51
Found at i:7983705 original size:134 final size:134
Alignment explanation
Indices: 7983465--7983958 Score: 830
Period size: 134 Copynumber: 3.7 Consensus size: 134
7983455 ATCAATAAAT
* * *
7983465 TTACCATTTATCCCATAAGCTCGTAAACTTATTTTACCAACATACTT-CCATTTATTCCATAAGC
1 TTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAACATACTTACCA-TTATTCCATAAGC
* *
7983529 TCGTAAGCTTATTTTACCAACATACTTACCATATATTCCATAAGCTCGTAAGCCTATTTTACCAA
65 TCGTAAGCCTATTTTACCAACATACTTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAA
*
7983594 CATAC
130 TATAC
7983599 TTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAACATACTTACCATTATTCCATAAGCT
1 TTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAACATACTTACCATTATTCCATAAGCT
7983664 CGTAAGCCTATTTTACCAACATACTTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAAT
66 CGTAAGCCTATTTTACCAACATACTTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAAT
7983729 ATAC
131 ATAC
* *
7983733 TTACCA-TTATTCCATAAGCTCGTAAGCCTTTTTTTACCAATATACTTACCATTATTCCATAAGC
1 TTACCATTTATTCCATAAGCTCGTAAGCC-TATTTTACCAACATACTTACCATTATTCCATAAGC
* *
7983797 TCGTAAGCCTATTTTACCAATATACTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAA
65 TCGTAAGCCTATTTTACCAACATACTTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAA
7983862 TATAC
130 TATAC
* *
7983867 TTACCATTTATTCCATAAGCTTGTAAGCCTATTTTACCAATATACTTACCATTATTCCATAAGCT
1 TTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAACATACTTACCATTATTCCATAAGCT
* *
7983932 CGTAAGCTTATTTTACCAATATACTTA
66 CGTAAGCCTATTTTACCAACATACTTA
7983959 TTCTATAAGC
Statistics
Matches: 344, Mismatches: 13, Indels: 6
0.95 0.04 0.02
Matches are distributed among these distances:
133 22 0.06
134 298 0.87
135 24 0.07
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.37
Consensus pattern (134 bp):
TTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAACATACTTACCATTATTCCATAAGCT
CGTAAGCCTATTTTACCAACATACTTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAAT
ATAC
Found at i:7984197 original size:59 final size:59
Alignment explanation
Indices: 7984134--7984245 Score: 154
Period size: 59 Copynumber: 1.9 Consensus size: 59
7984124 CTTCCCCTTT
* * *
7984134 CATTTTAGCACATGAAGTGCTCTAT-TCAAAAATTCATACCATTAGTATAATTTTGTTAC
1 CATTTTAGCACATGAAATGCCCTATGT-AAAAATCCATACCATTAGTATAATTTTGTTAC
* * *
7984193 CATTTTAGCACTTGAAATGCCCTATGTGAAAATCCATACCATTAGTATGATTT
1 CATTTTAGCACATGAAATGCCCTATGTAAAAATCCATACCATTAGTATAATTT
7984246 CCTTATGTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
59 45 0.98
60 1 0.02
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.38
Consensus pattern (59 bp):
CATTTTAGCACATGAAATGCCCTATGTAAAAATCCATACCATTAGTATAATTTTGTTAC
Found at i:7984421 original size:58 final size:58
Alignment explanation
Indices: 7984222--7984522 Score: 216
Period size: 59 Copynumber: 5.1 Consensus size: 58
7984212 CCCTATGTGA
* * * * * *
7984222 AAATCCATACCATT-AGTATGATTTCCTTAT-GTTTGAAGCACCCTTAGTACTTTATCTGG
1 AAATCTATA-CATTCAGTATGATTTCCTTATCATTT--AGCACACTAAGTGCTCTATCTGG
* ** * * * *
7984281 AAATCCATACAAGCAGTATGATTCCCTTACCATTTTAGCACA-TAAAATGCCCTATCTGG
1 AAATCTATACATTCAGTATGATTTCCTTATCA-TTTAGCACACT-AAGTGCTCTATCTGG
* * ** * * *
7984340 GAATCCATATTTTCAATATGATTTCCTTATCATTTAGCACACTCAGTGCTCTATATGG
1 AAATCTATACATTCAGTATGATTTCCTTATCATTTAGCACACTAAGTGCTCTATCTGG
* * * * *
7984398 AAATCTATACACTCAGTATGATTTCCTTACCATTTTAGCACA-TAAAATGCCCTATCTAG
1 AAATCTATACATTCAGTATGATTTCCTTATCA-TTTAGCACACT-AAGTGCTCTATCTGG
** * * * *
7984457 AAATCCT-TATTTTCAATATGATTTCCTTATCATTTAGCACACTCAGTGCTCCATATGG
1 AAAT-CTATACATTCAGTATGATTTCCTTATCATTTAGCACACTAAGTGCTCTATCTGG
7984515 AAATCTAT
1 AAATCTAT
7984523 CAAAATACTT
Statistics
Matches: 186, Mismatches: 46, Indels: 21
0.74 0.18 0.08
Matches are distributed among these distances:
57 2 0.01
58 72 0.39
59 107 0.58
60 2 0.01
61 3 0.02
ACGTcount: A:0.31, C:0.22, G:0.11, T:0.36
Consensus pattern (58 bp):
AAATCTATACATTCAGTATGATTTCCTTATCATTTAGCACACTAAGTGCTCTATCTGG
Found at i:7984439 original size:117 final size:117
Alignment explanation
Indices: 7984189--7984522 Score: 438
Period size: 117 Copynumber: 2.8 Consensus size: 117
7984179 TATAATTTTG
* * * * ** *
7984189 TTACCATTTTAGCACTTGAAATGCCCTATGTGAAAATCCATACCATT-AGTATGATTTCCTTAT-
1 TTACCATTTTAGCACATAAAATGCCCTATCTGGAAATCCATA-TTTTCAATATGATTTCCTTATC
* * * * * * *
7984252 GTTTGAAGCACCCTTAGTACTTTATCTGGAAATCCATACAAGCAGTATGATTCCC
65 ATTT--AGCACACTCAGTGCTCTATATGGAAATCTATACAAGCAGTATGATTCCC
*
7984307 TTACCATTTTAGCACATAAAATGCCCTATCTGGGAATCCATATTTTCAATATGATTTCCTTATCA
1 TTACCATTTTAGCACATAAAATGCCCTATCTGGAAATCCATATTTTCAATATGATTTCCTTATCA
** *
7984372 TTTAGCACACTCAGTGCTCTATATGGAAATCTATACACTCAGTATGATTTCC
66 TTTAGCACACTCAGTGCTCTATATGGAAATCTATACAAGCAGTATGATTCCC
* *
7984424 TTACCATTTTAGCACATAAAATGCCCTATCTAGAAATCCTTATTTTCAATATGATTTCCTTATCA
1 TTACCATTTTAGCACATAAAATGCCCTATCTGGAAATCCATATTTTCAATATGATTTCCTTATCA
*
7984489 TTTAGCACACTCAGTGCTCCATATGGAAATCTAT
66 TTTAGCACACTCAGTGCTCTATATGGAAATCTAT
7984523 CAAAATACTT
Statistics
Matches: 192, Mismatches: 22, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
117 137 0.71
118 52 0.27
119 3 0.02
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.36
Consensus pattern (117 bp):
TTACCATTTTAGCACATAAAATGCCCTATCTGGAAATCCATATTTTCAATATGATTTCCTTATCA
TTTAGCACACTCAGTGCTCTATATGGAAATCTATACAAGCAGTATGATTCCC
Found at i:7987728 original size:55 final size:54
Alignment explanation
Indices: 7987661--7988255 Score: 625
Period size: 55 Copynumber: 10.9 Consensus size: 54
7987651 TACTAAGTGT
* *
7987661 CGTACAGGCACTATGTGTGAAGATCCACATAATTTATCATGAGTTGATGAATAAC
1 CGTACAGGCACTATGTGTGAA-ATCCACAGAATTTGTCATGAGTTGATGAATAAC
* * * * *
7987716 CGTACATGCACTATGTGTGCAAATCCACAGATTTTATCATGAGTTAATAAATAAC
1 CGTACAGGCACTATGTGTG-AAATCCACAGAATTTGTCATGAGTTGATGAATAAC
* * **
7987771 CGTACATGCACTATGTGAGAAAAATCCATGGAATTTGTCATGAGTTGATGAATAAC
1 CGTACAGGCACTATGTGTG--AAATCCACAGAATTTGTCATGAGTTGATGAATAAC
*
7987827 CGTACAGGCACTATGTGTGCAAATCCA-TGAAATTTGTCATGAGTTGATGAATAAC
1 CGTACAGGCACTATGTGTG-AAATCCACAG-AATTTGTCATGAGTTGATGAATAAC
* * * *
7987882 CGTACAGGCACTATGTGTACAAATCCACGGAACTCGTCATGAGTTGATGAATAAC
1 CGTACAGGCACTATGTGT-GAAATCCACAGAATTTGTCATGAGTTGATGAATAAC
* * * *
7987937 TGTGCAGGCACTATGTGTATAAATCCA-TG---TTGTCATGAGTTGATGAATAAC
1 CGTACAGGCACTATGTGT-GAAATCCACAGAATTTGTCATGAGTTGATGAATAAC
*
7987988 CGTACAGGCACTATGTGTGCAAATCCA-TGAAATTTGTCATGAGTTGATGAATAAC
1 CGTACAGGCACTATGTGTG-AAATCCACAG-AATTTGTCATGAGTTGATGAATAAC
* * * *
7988043 CGTACAGGCACTATGTGTACAAATCCACGGAACTCGTCATGAGTTGATGAATAAC
1 CGTACAGGCACTATGTGT-GAAATCCACAGAATTTGTCATGAGTTGATGAATAAC
* * * * *
7988098 TGTGCAGGCACTATGTGTATAAATCCA-TGAAATTCGTCATGAGTTGATGAATAAC
1 CGTACAGGCACTATGTGT-GAAATCCACAG-AATTTGTCATGAGTTGATGAATAAC
* ** * *
7988153 CGTACATGCACTATGTGTGCAAATCCAC-GAAATTCATCACGAGTTGATGAATAAT
1 CGTACAGGCACTATGTGTG-AAATCCACAG-AATTTGTCATGAGTTGATGAATAAC
* * * *
7988208 CGTACAAGCA-TGATGTG-GCAACCCACAGAATTTATCATGAGTTGATGA
1 CGTACAGGCACT-ATGTGTGAAATCCACAGAATTTGTCATGAGTTGATGA
7988256 TCTACCGTAT
Statistics
Matches: 473, Mismatches: 50, Indels: 36
0.85 0.09 0.06
Matches are distributed among these distances:
51 46 0.10
53 24 0.05
54 6 0.01
55 347 0.73
56 50 0.11
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.28
Consensus pattern (54 bp):
CGTACAGGCACTATGTGTGAAATCCACAGAATTTGTCATGAGTTGATGAATAAC
Found at i:7987964 original size:110 final size:110
Alignment explanation
Indices: 7987661--7988213 Score: 697
Period size: 110 Copynumber: 5.1 Consensus size: 110
7987651 TACTAAGTGT
* * * *
7987661 CGTACAGGCACTATGTGTGA-AGATCCA-CATAATTTATCATGAGTTGATGAATAACCGTACATG
1 CGTACAGGCACTATGTGT-ACAAATCCATGA-AATTTGTCATGAGTTGATGAATAACCGTACAGG
* * * *
7987724 CACTATGTGTGCAAATCCAC-AGATTTTATCATGAGTTAATAAATAAC
64 CACTATGTGTGCAAATCCACGA-AATTTGTCATGAGTTGATGAATAAC
* * * *
7987771 CGTACATGCACTATGTGAGAAAAATCCATGGAATTTGTCATGAGTTGATGAATAACCGTACAGGC
1 CGTACAGGCACTATGTG-TACAAATCCATGAAATTTGTCATGAGTTGATGAATAACCGTACAGGC
*
7987836 ACTATGTGTGCAAATCCATGAAATTTGTCATGAGTTGATGAATAAC
65 ACTATGTGTGCAAATCCACGAAATTTGTCATGAGTTGATGAATAAC
* * * * * *
7987882 CGTACAGGCACTATGTGTACAAATCCACGGAACTCGTCATGAGTTGATGAATAACTGTGCAGGCA
1 CGTACAGGCACTATGTGTACAAATCCATGAAATTTGTCATGAGTTGATGAATAACCGTACAGGCA
** *
7987947 CTATGTGTATAAATCCATG----TTGTCATGAGTTGATGAATAAC
66 CTATGTGTGCAAATCCACGAAATTTGTCATGAGTTGATGAATAAC
*
7987988 CGTACAGGCACTATGTGTGCAAATCCATGAAATTTGTCATGAGTTGATGAATAACCGTACAGGCA
1 CGTACAGGCACTATGTGTACAAATCCATGAAATTTGTCATGAGTTGATGAATAACCGTACAGGCA
* * * *
7988053 CTATGTGTACAAATCCACGGAACTCGTCATGAGTTGATGAATAAC
66 CTATGTGTGCAAATCCACGAAATTTGTCATGAGTTGATGAATAAC
* * * * *
7988098 TGTGCAGGCACTATGTGTATAAATCCATGAAATTCGTCATGAGTTGATGAATAACCGTACATGCA
1 CGTACAGGCACTATGTGTACAAATCCATGAAATTTGTCATGAGTTGATGAATAACCGTACAGGCA
** * *
7988163 CTATGTGTGCAAATCCACGAAATTCATCACGAGTTGATGAATAAT
66 CTATGTGTGCAAATCCACGAAATTTGTCATGAGTTGATGAATAAC
7988208 CGTACA
1 CGTACA
7988214 AGCATGATGT
Statistics
Matches: 389, Mismatches: 46, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
106 97 0.25
110 198 0.51
111 93 0.24
112 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (110 bp):
CGTACAGGCACTATGTGTACAAATCCATGAAATTTGTCATGAGTTGATGAATAACCGTACAGGCA
CTATGTGTGCAAATCCACGAAATTTGTCATGAGTTGATGAATAAC
Found at i:7988029 original size:161 final size:162
Alignment explanation
Indices: 7987661--7988213 Score: 806
Period size: 161 Copynumber: 3.4 Consensus size: 162
7987651 TACTAAGTGT
* *
7987661 CGTACAGGCACTATGTGTG-AAGATCCA-CATAATTTATCATGAGTTGATGAATAACCGTACATG
1 CGTACAGGCACTATGTGTGCAA-ATCCATGA-AATTTATCATGAGTTGATGAATAACCGTACAGG
* * ** ** * * * * *
7987724 CACTATGTGTGCAAATCCACAGATTTTATCATGAGTTAATAAATAACCGTACATGCACTATGTGA
64 CACTATGTGTACAAATCCACGGAACTCGTCATGAGTTGATGAATAACTGTGCAGGCACTATGTG-
* *
7987789 GAAAAATCCATGGAATTTGTCATGAGTTGATGAATAAC
128 TATAAATCCAT-G-A-TTGTCATGAGTTGATGAATAAC
*
7987827 CGTACAGGCACTATGTGTGCAAATCCATGAAATTTGTCATGAGTTGATGAATAACCGTACAGGCA
1 CGTACAGGCACTATGTGTGCAAATCCATGAAATTTATCATGAGTTGATGAATAACCGTACAGGCA
7987892 CTATGTGTACAAATCCACGGAACTCGTCATGAGTTGATGAATAACTGTGCAGGCACTATGTGTAT
66 CTATGTGTACAAATCCACGGAACTCGTCATGAGTTGATGAATAACTGTGCAGGCACTATGTGTAT
7987957 AAATCCATG-TTGTCATGAGTTGATGAATAAC
131 AAATCCATGATTGTCATGAGTTGATGAATAAC
*
7987988 CGTACAGGCACTATGTGTGCAAATCCATGAAATTTGTCATGAGTTGATGAATAACCGTACAGGCA
1 CGTACAGGCACTATGTGTGCAAATCCATGAAATTTATCATGAGTTGATGAATAACCGTACAGGCA
7988053 CTATGTGTACAAATCCACGGAACTCGTCATGAGTTGATGAATAACTGTGCAGGCACTATGTGTAT
66 CTATGTGTACAAATCCACGGAACTCGTCATGAGTTGATGAATAACTGTGCAGGCACTATGTGTAT
7988118 AAATCCATGAAATTCGTCATGAGTTGATGAATAAC
131 AAATCCATG--ATT-GTCATGAGTTGATGAATAAC
* * * * *
7988153 CGTACATGCACTATGTGTGCAAATCCACGAAATTCATCACGAGTTGATGAATAATCGTACA
1 CGTACAGGCACTATGTGTGCAAATCCATGAAATTTATCATGAGTTGATGAATAACCGTACA
7988214 AGCATGATGT
Statistics
Matches: 359, Mismatches: 22, Indels: 13
0.91 0.06 0.03
Matches are distributed among these distances:
161 161 0.45
164 3 0.01
165 84 0.23
166 108 0.30
167 3 0.01
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (162 bp):
CGTACAGGCACTATGTGTGCAAATCCATGAAATTTATCATGAGTTGATGAATAACCGTACAGGCA
CTATGTGTACAAATCCACGGAACTCGTCATGAGTTGATGAATAACTGTGCAGGCACTATGTGTAT
AAATCCATGATTGTCATGAGTTGATGAATAAC
Found at i:7994809 original size:55 final size:55
Alignment explanation
Indices: 7994720--7995359 Score: 379
Period size: 55 Copynumber: 11.4 Consensus size: 55
7994710 TACTAAGTAT
*
7994720 CGTACAGGCACTATGTGTGCAAATCCA-AAGAATTCATCATGAGTTGATGAATAAC
1 CGTACAGGCACTATGTGTGCAAATCCACGA-AATTCATCATGAGTTGATGAATAAC
* * *
7994775 TGCACAGGCACTATGTGTGCAAATCCACGAAATTCATCATGAATTGATGAATAAC
1 CGTACAGGCACTATGTGTGCAAATCCACGAAATTCATCATGAGTTGATGAATAAC
* * * *
7994830 AGTACAGGAACTATGTGTGCAAATCCACGGAATTCGTCATGAGTTGATGAATAAC
1 CGTACAGGCACTATGTGTGCAAATCCACGAAATTCATCATGAGTTGATGAATAAC
* * * * * *
7994885 CGTATATGTACTATGTGTGCAAATCCATGAAATTCGTCATGAGTTTATGAATAAC
1 CGTACAGGCACTATGTGTGCAAATCCACGAAATTCATCATGAGTTGATGAATAAC
* * * * * *
7994940 CGTACAGGCACTATGTGTGCAAATCAATGAAATTGCAATCCACGAAATTCATCATGAATTGA-
1 CGTACAGGCACTATGTGTGCAAATCCACGAAATT-C-AT-CATG--AGT--TGATGAA-TAAC
* * ** * **** * * * * *
7995002 TGAATAACA-GTAC-A-G-GAAC-TATGTGTGCAAATCCA-C-GGAATTCGTCATGAGTTGA-
1 CG--T-ACAGGCACTATGTGTGCAAATCCACG-AAATTCATCATGAGTT-G--ATGA-ATAAC
* * ** * * * *
7995057 TGAATAACCGTATATGTACTATGTGTGCAAATCCATGAAATTCGTCATGAGTTTATGAATAAC
1 CG--T-ACAG-GCA-CT---ATGTGTGCAAATCCACGAAATTCATCATGAGTTGATGAATAAC
* * **
7995120 CGTACAGGCACTATGTGTGCAAATCAATGAAATTTGTCATGAGTTGATGAATAAC
1 CGTACAGGCACTATGTGTGCAAATCCACGAAATTCATCATGAGTTGATGAATAAC
* **
7995175 CGTACATGCACTATGTGTGCAAATCCACGAAATTTGTCATGAGTTGATGAATAAC
1 CGTACAGGCACTATGTGTGCAAATCCACGAAATTCATCATGAGTTGATGAATAAC
* * * **
7995230 CGTACAAGCACTATGTGTGAAAATCAACGAAATTCATCATTTGTTGATGAATAAC
1 CGTACAGGCACTATGTGTGCAAATCCACGAAATTCATCATGAGTTGATGAATAAC
* ** * * *
7995285 TGTACAGGCAGGATGTATGC-AACCCA-TATAATTCATCATGAGTTGATGAACT-AC
1 CGTACAGGCACTATGTGTGCAAATCCACGA-AATTCATCATGAGTTGATGAA-TAAC
* * *
7995339 CGTATAGACACTACGTGTGCA
1 CGTACAGGCACTATGTGTGCA
7995360 TCTTAATAAA
Statistics
Matches: 461, Mismatches: 91, Indels: 66
0.75 0.15 0.11
Matches are distributed among these distances:
52 1 0.00
53 1 0.00
54 40 0.09
55 346 0.75
56 3 0.01
57 4 0.01
58 4 0.01
59 2 0.00
60 10 0.02
61 7 0.02
62 11 0.02
63 9 0.02
64 11 0.02
65 8 0.02
66 4 0.01
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (55 bp):
CGTACAGGCACTATGTGTGCAAATCCACGAAATTCATCATGAGTTGATGAATAAC
Found at i:7994917 original size:110 final size:110
Alignment explanation
Indices: 7994720--7995359 Score: 606
Period size: 110 Copynumber: 5.7 Consensus size: 110
7994710 TACTAAGTAT
* * *
7994720 CGTACAGGCACTATGTGTGCAAATCCA-AAGAATTCATCATGAGTTGATGAATAACTGCACAGGC
1 CGTACAGGCACTATGTGTGCAAATCCATGA-AATTCATCATGAGTTGATGAATAACCGTACAGGC
* *
7994784 ACTATGTGTGCAAATCCACGAAATTCATCATGAATTGATGAATAAC
65 ACTATGTGTGCAAATCCACGAAATTCGTCATGAGTTGATGAATAAC
* * * * * * * *
7994830 AGTACAGGAACTATGTGTGCAAATCCACGGAATTCGTCATGAGTTGATGAATAACCGTATATGTA
1 CGTACAGGCACTATGTGTGCAAATCCATGAAATTCATCATGAGTTGATGAATAACCGTACAGGCA
* *
7994895 CTATGTGTGCAAATCCATGAAATTCGTCATGAGTTTATGAATAAC
66 CTATGTGTGCAAATCCACGAAATTCGTCATGAGTTGATGAATAAC
* * * * * *
7994940 CGTACAGGCACTATGTGTGCAAATCAATGAAATTGCAATCCACGAAATTCATCATGAATTGA-TG
1 CGTACAGGCACTATGTGTGCAAATCCATGAAATT-C-AT-CATG--AGT--TGATGAA-TAACCG
* ** * *
7995004 AATAACAGTACAGGAACTATGTGTGCAAATCCACGGAATTCGTCATGAGTTGATGAATAAC
58 --T-ACAG-GCA-CTA-TGTGT--GCAAATCCACGAAATTCGTCATGAGTTGATGAATAAC
* * * * *
7995065 CGTATATGTACTATGTGTGCAAATCCATGAAATTCGTCATGAGTTTATGAATAACCGTACAGGCA
1 CGTACAGGCACTATGTGTGCAAATCCATGAAATTCATCATGAGTTGATGAATAACCGTACAGGCA
* * *
7995130 CTATGTGTGCAAATCAATGAAATTTGTCATGAGTTGATGAATAAC
66 CTATGTGTGCAAATCCACGAAATTCGTCATGAGTTGATGAATAAC
* * ** *
7995175 CGTACATGCACTATGTGTGCAAATCCACGAAATTTGTCATGAGTTGATGAATAACCGTACAAGCA
1 CGTACAGGCACTATGTGTGCAAATCCATGAAATTCATCATGAGTTGATGAATAACCGTACAGGCA
* * * **
7995240 CTATGTGTGAAAATCAACGAAATTCATCATTTGTTGATGAATAAC
66 CTATGTGTGCAAATCCACGAAATTCGTCATGAGTTGATGAATAAC
* ** * * * *
7995285 TGTACAGGCAGGATGTATGC-AACCCAT-ATAATTCATCATGAGTTGATGAACT-ACCGTATAGA
1 CGTACAGGCACTATGTGTGCAAATCCATGA-AATTCATCATGAGTTGATGAA-TAACCGTACAGG
*
7995347 CACTACGTGTGCA
64 CACTATGTGTGCA
7995360 TCTTAATAAA
Statistics
Matches: 431, Mismatches: 79, Indels: 41
0.78 0.14 0.07
Matches are distributed among these distances:
108 1 0.00
109 42 0.10
110 271 0.63
111 1 0.00
112 5 0.01
113 4 0.01
114 2 0.00
115 6 0.01
116 1 0.00
117 9 0.02
118 9 0.02
119 1 0.00
120 4 0.01
121 1 0.00
122 4 0.01
123 5 0.01
124 1 0.00
125 64 0.15
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (110 bp):
CGTACAGGCACTATGTGTGCAAATCCATGAAATTCATCATGAGTTGATGAATAACCGTACAGGCA
CTATGTGTGCAAATCCACGAAATTCGTCATGAGTTGATGAATAAC
Found at i:7995098 original size:180 final size:180
Alignment explanation
Indices: 7994796--7995153 Score: 716
Period size: 180 Copynumber: 2.0 Consensus size: 180
7994786 TATGTGTGCA
7994796 AATCCACGAAATTCATCATGAATTGATGAATAACAGTACAGGAACTATGTGTGCAAATCCACGGA
1 AATCCACGAAATTCATCATGAATTGATGAATAACAGTACAGGAACTATGTGTGCAAATCCACGGA
7994861 ATTCGTCATGAGTTGATGAATAACCGTATATGTACTATGTGTGCAAATCCATGAAATTCGTCATG
66 ATTCGTCATGAGTTGATGAATAACCGTATATGTACTATGTGTGCAAATCCATGAAATTCGTCATG
7994926 AGTTTATGAATAACCGTACAGGCACTATGTGTGCAAATCAATGAAATTGC
131 AGTTTATGAATAACCGTACAGGCACTATGTGTGCAAATCAATGAAATTGC
7994976 AATCCACGAAATTCATCATGAATTGATGAATAACAGTACAGGAACTATGTGTGCAAATCCACGGA
1 AATCCACGAAATTCATCATGAATTGATGAATAACAGTACAGGAACTATGTGTGCAAATCCACGGA
7995041 ATTCGTCATGAGTTGATGAATAACCGTATATGTACTATGTGTGCAAATCCATGAAATTCGTCATG
66 ATTCGTCATGAGTTGATGAATAACCGTATATGTACTATGTGTGCAAATCCATGAAATTCGTCATG
7995106 AGTTTATGAATAACCGTACAGGCACTATGTGTGCAAATCAATGAAATT
131 AGTTTATGAATAACCGTACAGGCACTATGTGTGCAAATCAATGAAATT
7995154 TGTCATGAGT
Statistics
Matches: 178, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
180 178 1.00
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.28
Consensus pattern (180 bp):
AATCCACGAAATTCATCATGAATTGATGAATAACAGTACAGGAACTATGTGTGCAAATCCACGGA
ATTCGTCATGAGTTGATGAATAACCGTATATGTACTATGTGTGCAAATCCATGAAATTCGTCATG
AGTTTATGAATAACCGTACAGGCACTATGTGTGCAAATCAATGAAATTGC
Found at i:7995161 original size:235 final size:235
Alignment explanation
Indices: 7994750--7995208 Score: 711
Period size: 235 Copynumber: 2.0 Consensus size: 235
7994740 AAATCCAAAG
* * *
7994750 AATTCATCATGAGTTGATGAATAACTGCACAGGCACTATGTGTGCAAATCCACGAAATTCATCAT
1 AATTCATCATGAATTGATGAATAACAGCACAGGAACTATGTGTGCAAATCCACGAAATTCATCAT
*
7994815 GAATTGATGAATAACAGTACAGGAACTATGTGTGCAAATCCACGGAATTCGTCATGAGTTGATGA
66 GAATTGATGAATAACAGTACAGGAACTATGTGTGCAAATCCACGAAATTCGTCATGAGTTGATGA
* * * * *
7994880 ATAACCGTATATGTACTATGTGTGCAAATCCATGAAATTCGTCATGAGTTTATGAATAACCGTAC
131 ATAACCGTACAGGCACTATGTGTGCAAATCAATGAAATTCGTCATGAGTTGATGAATAACCGTAC
*
7994945 AGGCACTATGTGTGCAAATCAATGAAATTGCAATCCACGA
196 AGGCACTATGTGTGCAAATCAACGAAATTGCAATCCACGA
* * *
7994985 AATTCATCATGAATTGATGAATAACAGTACAGGAACTATGTGTGCAAATCCACGGAATTCGTCAT
1 AATTCATCATGAATTGATGAATAACAGCACAGGAACTATGTGTGCAAATCCACGAAATTCATCAT
* * * * * * *
7995050 GAGTTGATGAATAACCGTATATGTACTATGTGTGCAAATCCATGAAATTCGTCATGAGTTTATGA
66 GAATTGATGAATAACAGTACAGGAACTATGTGTGCAAATCCACGAAATTCGTCATGAGTTGATGA
*
7995115 ATAACCGTACAGGCACTATGTGTGCAAATCAATGAAATTTGTCATGAGTTGATGAATAACCGTAC
131 ATAACCGTACAGGCACTATGTGTGCAAATCAATGAAATTCGTCATGAGTTGATGAATAACCGTAC
* *
7995180 ATGCACTATGTGTGCAAATCCACGAAATT
196 AGGCACTATGTGTGCAAATCAACGAAATT
7995209 TGTCATGAGT
Statistics
Matches: 201, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
235 201 1.00
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.29
Consensus pattern (235 bp):
AATTCATCATGAATTGATGAATAACAGCACAGGAACTATGTGTGCAAATCCACGAAATTCATCAT
GAATTGATGAATAACAGTACAGGAACTATGTGTGCAAATCCACGAAATTCGTCATGAGTTGATGA
ATAACCGTACAGGCACTATGTGTGCAAATCAATGAAATTCGTCATGAGTTGATGAATAACCGTAC
AGGCACTATGTGTGCAAATCAACGAAATTGCAATCCACGA
Found at i:7995243 original size:290 final size:290
Alignment explanation
Indices: 7994721--7995263 Score: 843
Period size: 290 Copynumber: 1.9 Consensus size: 290
7994711 ACTAAGTATC
* *
7994721 GTACAGGCACTATGTGTGCAAATCCAAAGAATTCATCATGAGTTGATGAATAACTGCACAGGCAC
1 GTACAGGAACTATGTGTGCAAATCCAAAGAATTCATCATGAGTTGATGAATAACCGCACAGGCAC
7994786 TATGTGTGCAAATCCACGAAATTCATCATGAATTGATGAATAACAGTACAGGAACTATGTGTGCA
66 TATGTGTGCAAATCCACGAAATTCATCATGAATTGATGAATAACAGTACAGGAACTATGTGTGCA
* * * * *
7994851 AATCCACGGAATTCGTCATGAGTTGATGAATAACCGTATATGTACTATGTGTGCAAATCCATGAA
131 AATCAACGAAATTCGTCATGAGTTGATGAATAACCGTACATGCACTATGTGTGCAAATCCACGAA
* * * *
7994916 ATTCGTCATGAGTTTATGAATAACCGTACAGGCACTATGTGTGCAAATCAATGAAATTGCAATCC
196 ATTCGTCATGAGTTGATGAATAACCGTACAAGCACTATGTGTGAAAATCAACGAAATTGCAATCC
7994981 ACGAAATTCATCATGAATTGATGAATAACA
261 ACGAAATTCATCATGAATTGATGAATAACA
** * * * * *
7995011 GTACAGGAACTATGTGTGCAAATCCACGGAATTCGTCATGAGTTGATGAATAACCGTATATGTAC
1 GTACAGGAACTATGTGTGCAAATCCAAAGAATTCATCATGAGTTGATGAATAACCGCACAGGCAC
* * * * * *
7995076 TATGTGTGCAAATCCATGAAATTCGTCATGAGTTTATGAATAACCGTACAGGCACTATGTGTGCA
66 TATGTGTGCAAATCCACGAAATTCATCATGAATTGATGAATAACAGTACAGGAACTATGTGTGCA
* *
7995141 AATCAATGAAATTTGTCATGAGTTGATGAATAACCGTACATGCACTATGTGTGCAAATCCACGAA
131 AATCAACGAAATTCGTCATGAGTTGATGAATAACCGTACATGCACTATGTGTGCAAATCCACGAA
*
7995206 ATTTGTCATGAGTTGATGAATAACCGTACAAGCACTATGTGTGAAAATCAACGAAATT
196 ATTCGTCATGAGTTGATGAATAACCGTACAAGCACTATGTGTGAAAATCAACGAAATT
7995264 CATCATTTGT
Statistics
Matches: 226, Mismatches: 27, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
290 226 1.00
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (290 bp):
GTACAGGAACTATGTGTGCAAATCCAAAGAATTCATCATGAGTTGATGAATAACCGCACAGGCAC
TATGTGTGCAAATCCACGAAATTCATCATGAATTGATGAATAACAGTACAGGAACTATGTGTGCA
AATCAACGAAATTCGTCATGAGTTGATGAATAACCGTACATGCACTATGTGTGCAAATCCACGAA
ATTCGTCATGAGTTGATGAATAACCGTACAAGCACTATGTGTGAAAATCAACGAAATTGCAATCC
ACGAAATTCATCATGAATTGATGAATAACA
Found at i:7995282 original size:165 final size:165
Alignment explanation
Indices: 7994720--7995294 Score: 684
Period size: 165 Copynumber: 3.4 Consensus size: 165
7994710 TACTAAGTAT
* * * * *
7994720 CGTACAGGCACTATGTGTGCAAATCCAAAG-AATTCATCATGAGTTGATGAATAACTGCACAGGC
1 CGTACAAGCACTATGTGTGAAAAT-CAACGAAATTCATCATGAGTTGATGAATAACCGTACAGGC
* * **
7994784 ACTATGTGTGCAAATCCACGAAATTCATCATGAATTGATGAATAACAGTACAGGAACTATGTGTG
65 ACTATGTGTGCAAATCAATGAAATTTGTCATGAATTGATGAATAACAGTACAGGAACTATGTGTG
*
7994849 CAAATCCACGGAATTCGTCATGAGTTGATGAATAAC
130 CAAATCCACGAAATTCGTCATGAGTTGATGAATAAC
* * * * * * * *
7994885 CGTATATGTACTATGTGTGCAAATCCATGAAATTCGTCATGAGTTTATGAATAACCGTACAGGCA
1 CGTACAAGCACTATGTGTGAAAATCAACGAAATTCATCATGAGTTGATGAATAACCGTACAGGCA
7994950 CTATGTGTGCAAATCAATGAAATTGCAATCCACGAAATTCATCATGAATTGATGAATAACAGTAC
66 CTATGTGTGCAAATCAATGAAATT----T----G-------TCATGAATTGATGAATAACAGTAC
*
7995015 AGGAACTATGTGTGCAAATCCACGGAATTCGTCATGAGTTGATGAATAAC
116 AGGAACTATGTGTGCAAATCCACGAAATTCGTCATGAGTTGATGAATAAC
* * * * * * * *
7995065 CGTATATGTACTATGTGTGCAAATCCATGAAATTCGTCATGAGTTTATGAATAACCGTACAGGCA
1 CGTACAAGCACTATGTGTGAAAATCAACGAAATTCATCATGAGTTGATGAATAACCGTACAGGCA
* * * *
7995130 CTATGTGTGCAAATCAATGAAATTTGTCATGAGTTGATGAATAACCGTACATGCACTATGTGTGC
66 CTATGTGTGCAAATCAATGAAATTTGTCATGAATTGATGAATAACAGTACAGGAACTATGTGTGC
*
7995195 AAATCCACGAAATTTGTCATGAGTTGATGAATAAC
131 AAATCCACGAAATTCGTCATGAGTTGATGAATAAC
** *
7995230 CGTACAAGCACTATGTGTGAAAATCAACGAAATTCATCATTTGTTGATGAATAACTGTACAGGCA
1 CGTACAAGCACTATGTGTGAAAATCAACGAAATTCATCATGAGTTGATGAATAACCGTACAGGCA
7995295 GGATGTATGC
Statistics
Matches: 364, Mismatches: 30, Indels: 32
0.85 0.07 0.08
Matches are distributed among these distances:
164 3 0.01
165 196 0.54
172 1 0.00
176 1 0.00
180 163 0.45
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (165 bp):
CGTACAAGCACTATGTGTGAAAATCAACGAAATTCATCATGAGTTGATGAATAACCGTACAGGCA
CTATGTGTGCAAATCAATGAAATTTGTCATGAATTGATGAATAACAGTACAGGAACTATGTGTGC
AAATCCACGAAATTCGTCATGAGTTGATGAATAAC
Found at i:7997645 original size:21 final size:21
Alignment explanation
Indices: 7997607--7997646 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7997597 AATTAAACTT
* *
7997607 GGTATCAATACTCTTACTTAG
1 GGTATCAATACCCCTACTTAG
*
7997628 GGTATCGATACCCCTACTT
1 GGTATCAATACCCCTACTT
7997647 CATATGCTAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (21 bp):
GGTATCAATACCCCTACTTAG
Found at i:8000159 original size:28 final size:29
Alignment explanation
Indices: 8000117--8000171 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
8000107 AATGGAAAAA
*
8000117 ATAAGAATAAAATAAA-AGGTAAAATAGT
1 ATAAGAATAAAATAAACAAGTAAAATAGT
8000145 ATAA-AATAAATATAAACAAGTAAAATA
1 ATAAGAATAAA-ATAAACAAGTAAAATA
8000172 ACAATGCTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 6 0.25
28 9 0.38
29 9 0.38
ACGTcount: A:0.67, C:0.02, G:0.09, T:0.22
Consensus pattern (29 bp):
ATAAGAATAAAATAAACAAGTAAAATAGT
Found at i:8023801 original size:18 final size:18
Alignment explanation
Indices: 8023770--8023806 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
8023760 AACTAACCTG
8023770 AAATAATATATTTATTCA
1 AAATAATATATTTATTCA
* *
8023788 AAATATTATTTTTATTCA
1 AAATAATATATTTATTCA
8023806 A
1 A
8023807 TAAAAATATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (18 bp):
AAATAATATATTTATTCA
Found at i:8030180 original size:34 final size:34
Alignment explanation
Indices: 8030137--8030218 Score: 101
Period size: 34 Copynumber: 2.4 Consensus size: 34
8030127 CATTTAAGCT
* * * ** *
8030137 TTTAATTCATTTAGGGAAGTAGTTTATTCATGTA
1 TTTAGTTCATTCAAGGAAGTAGTACATTCATGCA
*
8030171 TTTAGTTCATTCAATGAAGTAGTACATTCATGCA
1 TTTAGTTCATTCAAGGAAGTAGTACATTCATGCA
8030205 TTTAGTTCATTCAA
1 TTTAGTTCATTCAA
8030219 TAATATACTT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 41 1.00
ACGTcount: A:0.30, C:0.11, G:0.15, T:0.44
Consensus pattern (34 bp):
TTTAGTTCATTCAAGGAAGTAGTACATTCATGCA
Found at i:8030182 original size:17 final size:16
Alignment explanation
Indices: 8030156--8030217 Score: 61
Period size: 17 Copynumber: 3.7 Consensus size: 16
8030146 TTTAGGGAAG
*
8030156 TAGTTTATTCATGTATT
1 TAGTTCATTCATG-ATT
**
8030173 TAGTTCATTCAATGAAG
1 TAGTTCATTC-ATGATT
*
8030190 TAGTACATTCATGCATT
1 TAGTTCATTCATG-ATT
8030207 TAGTTCATTCA
1 TAGTTCATTCA
8030218 ATAATATACT
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
16 3 0.08
17 30 0.83
18 3 0.08
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.45
Consensus pattern (16 bp):
TAGTTCATTCATGATT
Found at i:8030219 original size:34 final size:34
Alignment explanation
Indices: 8030152--8030219 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 34
8030142 TTCATTTAGG
** *
8030152 GAAGTAGTTTATTCATGTATTTAGTTCATTCAAT
1 GAAGTAGTACATTCATGCATTTAGTTCATTCAAT
8030186 GAAGTAGTACATTCATGCATTTAGTTCATTCAAT
1 GAAGTAGTACATTCATGCATTTAGTTCATTCAAT
8030220 AATATACTTC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.31, C:0.12, G:0.15, T:0.43
Consensus pattern (34 bp):
GAAGTAGTACATTCATGCATTTAGTTCATTCAAT
Found at i:8030302 original size:17 final size:17
Alignment explanation
Indices: 8030266--8030313 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
8030256 AAGTTATTTT
*
8030266 ATTAATTAAACTAATTC
1 ATTAATTAAACTAATAC
* *
8030283 ATTCATTAAACTAGTAC
1 ATTAATTAAACTAATAC
*
8030300 ATTAATTAATCTAA
1 ATTAATTAAACTAA
8030314 CTCTTAATTG
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.46, C:0.12, G:0.02, T:0.40
Consensus pattern (17 bp):
ATTAATTAAACTAATAC
Found at i:8040668 original size:28 final size:27
Alignment explanation
Indices: 8040637--8040693 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
8040627 TAAAAGTGTT
8040637 AAAGTCAGAGAACATCAAAAATCAAGAG
1 AAAGTCAGAG-ACATCAAAAATCAAGAG
** * *
8040665 AAAGTGGGAGAGATGAAAAATCAAGAG
1 AAAGTCAGAGACATCAAAAATCAAGAG
8040692 AA
1 AA
8040694 TGTGAGTAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
27 17 0.68
28 8 0.32
ACGTcount: A:0.56, C:0.09, G:0.25, T:0.11
Consensus pattern (27 bp):
AAAGTCAGAGACATCAAAAATCAAGAG
Found at i:8041506 original size:114 final size:114
Alignment explanation
Indices: 8041303--8041527 Score: 344
Period size: 114 Copynumber: 2.0 Consensus size: 114
8041293 AAGATTGGTG
* * * *
8041303 TCTTCTATTATAATGCTACTAACATCGTATTCATTGATCTCATTGTCCGATTCAATATCCTTGGT
1 TCTTCTATTACAATGCTACTAACATCATATTCATCGATCTCATTGTCCGATTCAATATCCATGGT
* *
8041368 AGAAGAATGAGTAGAAGAATAAGTGGAAGTAGATGAATTACCTTGGGTA
66 AAAAGAATGAGTAGAAGAAGAAGTGGAAGTAGATGAATTACCTTGGGTA
* * * *
8041417 TCTTCTATTACAATGCTTCTAGCATCATATTCATCGATGTCATTGTCCGATTCAGTATCCATGGT
1 TCTTCTATTACAATGCTACTAACATCATATTCATCGATCTCATTGTCCGATTCAATATCCATGGT
8041482 AAAAG-ATGGAGTAGAAGAAGAAGTGGAAGTAGATGAATTACCTTGG
66 AAAAGAAT-GAGTAGAAGAAGAAGTGGAAGTAGATGAATTACCTTGG
8041528 TAAGTAGATG
Statistics
Matches: 100, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
113 2 0.02
114 98 0.98
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33
Consensus pattern (114 bp):
TCTTCTATTACAATGCTACTAACATCATATTCATCGATCTCATTGTCCGATTCAATATCCATGGT
AAAAGAATGAGTAGAAGAAGAAGTGGAAGTAGATGAATTACCTTGGGTA
Found at i:8041534 original size:21 final size:21
Alignment explanation
Indices: 8041508--8041560 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
8041498 GAAGAAGTGG
8041508 AAGTAGATGAATTACCTTGGT
1 AAGTAGATGAATTACCTTGGT
8041529 AAGTAGATGAATTACCTTGGT
1 AAGTAGATGAATTACCTTGGT
* *
8041550 ATGTATATGAA
1 AAGTAGATGAA
8041561 GAACATTTGG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.36, C:0.08, G:0.23, T:0.34
Consensus pattern (21 bp):
AAGTAGATGAATTACCTTGGT
Found at i:8043141 original size:18 final size:17
Alignment explanation
Indices: 8043110--8043154 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
8043100 TAAAACTAAA
*
8043110 AAAAGATAATTCCTAATAT
1 AAAA-ATAAATCCTAAT-T
8043129 AAAAATAAATCCTAATT
1 AAAAATAAATCCTAATT
*
8043146 TAAAATAAA
1 AAAAATAAA
8043155 AGAATTCAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 9 0.38
18 11 0.46
19 4 0.17
ACGTcount: A:0.60, C:0.09, G:0.02, T:0.29
Consensus pattern (17 bp):
AAAAATAAATCCTAATT
Found at i:8049616 original size:36 final size:36
Alignment explanation
Indices: 8049569--8049642 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
8049559 GAAGGCGTTG
*
8049569 AGCCAGTCGTCATTGTACACGAACTGTTGGTTTTTA
1 AGCCAGTCGTCATTGCACACGAACTGTTGGTTTTTA
8049605 AGCCAGTCGTCATTGCACACGAACTGTTGGTTTTTA
1 AGCCAGTCGTCATTGCACACGAACTGTTGGTTTTTA
8049641 AG
1 AG
8049643 TAACAGACAC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.34
Consensus pattern (36 bp):
AGCCAGTCGTCATTGCACACGAACTGTTGGTTTTTA
Found at i:8052021 original size:165 final size:166
Alignment explanation
Indices: 8051749--8052080 Score: 657
Period size: 165 Copynumber: 2.0 Consensus size: 166
8051739 TGGCAATTTG
8051749 GCCTACTTGATTCTCCAACACTCTTAATGATGAACTAAGGCTTTGTAATAGAGTTGTTTGGATTT
1 GCCTACTTGATTCTCCAACACTCTTAATGATGAACTAAGGCTTTGTAATAGAGTTGTTTGGATTT
8051814 GTAAAAAATCACTTTCATTCTTGGTTATCGATGAGTGTTCATGTATCAAGGTCTTTATTGAAGCC
66 GTAAAAAATCACTTTCATTCTTGGTTATCGATGAGTGTTCATGTATCAAGGTCTTTATTGAAGCC
8051879 ATG-AATATTTTGTTGAGTCCATAAATTCCTGCAGT
131 ATGAAATATTTTGTTGAGTCCATAAATTCCTGCAGT
8051914 GCCTACTTGATTCTCCAACACTCTTAATGATGAACTAAGGCTTTGTAATAGAGTTGTTTGGATTT
1 GCCTACTTGATTCTCCAACACTCTTAATGATGAACTAAGGCTTTGTAATAGAGTTGTTTGGATTT
8051979 GTAAAAAATCACTTTCATTCTTGGTTATCGATGAGTGTTCATGTATCAAGGTCTTTATTGAAGCC
66 GTAAAAAATCACTTTCATTCTTGGTTATCGATGAGTGTTCATGTATCAAGGTCTTTATTGAAGCC
8052044 ATGAAATATTTTGTTGAGTCCATAAATTCCTGCAGT
131 ATGAAATATTTTGTTGAGTCCATAAATTCCTGCAGT
8052080 G
1 G
8052081 AAGCTTCAAG
Statistics
Matches: 166, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
165 133 0.80
166 33 0.20
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (166 bp):
GCCTACTTGATTCTCCAACACTCTTAATGATGAACTAAGGCTTTGTAATAGAGTTGTTTGGATTT
GTAAAAAATCACTTTCATTCTTGGTTATCGATGAGTGTTCATGTATCAAGGTCTTTATTGAAGCC
ATGAAATATTTTGTTGAGTCCATAAATTCCTGCAGT
Found at i:8058504 original size:15 final size:15
Alignment explanation
Indices: 8058486--8058519 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8058476 TAAAAAATTA
8058486 AAAATAAATTAAAAG
1 AAAATAAATTAAAAG
* *
8058501 AAAATGAATTAAATG
1 AAAATAAATTAAAAG
8058516 AAAA
1 AAAA
8058520 CAAAATAGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.21
Consensus pattern (15 bp):
AAAATAAATTAAAAG
Found at i:8067671 original size:20 final size:20
Alignment explanation
Indices: 8067578--8067663 Score: 154
Period size: 20 Copynumber: 4.3 Consensus size: 20
8067568 GTATCACTTA
*
8067578 AGTATAGATACTCTTGATGG
1 AGTATCGATACTCTTGATGG
8067598 AGTATCGATACTCTTGATGG
1 AGTATCGATACTCTTGATGG
8067618 AGTATCGATACTCTTGATGG
1 AGTATCGATACTCTTGATGG
*
8067638 AGTATCGATACTCTTGATGA
1 AGTATCGATACTCTTGATGG
8067658 AGTATC
1 AGTATC
8067664 AGTACTCTAC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 64 1.00
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (20 bp):
AGTATCGATACTCTTGATGG
Found at i:8067762 original size:26 final size:26
Alignment explanation
Indices: 8067727--8067785 Score: 109
Period size: 26 Copynumber: 2.3 Consensus size: 26
8067717 TACTTGATGT
8067727 TTGATAAAATAAATGGAGTATTGATA
1 TTGATAAAATAAATGGAGTATTGATA
8067753 TTGATAAAATAAATGGAGTATTGATA
1 TTGATAAAATAAATGGAGTATTGATA
*
8067779 CTGATAA
1 TTGATAA
8067786 GAAAATATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.46, C:0.02, G:0.19, T:0.34
Consensus pattern (26 bp):
TTGATAAAATAAATGGAGTATTGATA
Found at i:8068411 original size:28 final size:26
Alignment explanation
Indices: 8068389--8068439 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
8068379 GATTTTATGT
*
8068389 TAAAGAACAAATTTATAAAATTTTAA
1 TAAAGAACAAACTTATAAAATTTTAA
**
8068415 TAAAGAATGAACTTATAAAATTTTA
1 TAAAGAACAAACTTATAAAATTTTA
8068440 GAGGAAAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.35
Consensus pattern (26 bp):
TAAAGAACAAACTTATAAAATTTTAA
Found at i:8072427 original size:6 final size:6
Alignment explanation
Indices: 8072394--8072424 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
8072384 AAAAAATGAC
*
8072394 TAATTA TAATTA TAATTA TAATTA TTATTA T
1 TAATTA TAATTA TAATTA TAATTA TAATTA T
8072425 TATGTTTTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (6 bp):
TAATTA
Found at i:8074511 original size:21 final size:20
Alignment explanation
Indices: 8074465--8074503 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
8074455 TCTTAATTGC
*
8074465 AAAAATTTAAAAATTTAAAT
1 AAAAATTTAAAAATTCAAAT
8074485 AAAAATTTAAAAAATTCAA
1 AAAAATTT-AAAAATTCAA
8074504 TTCAAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (20 bp):
AAAAATTTAAAAATTCAAAT
Found at i:8075629 original size:3 final size:3
Alignment explanation
Indices: 8075610--8075653 Score: 54
Period size: 3 Copynumber: 14.7 Consensus size: 3
8075600 AAAAATAAAA
* *
8075610 AAT ATT AAT ATT AAT AAT AAT AAT AAT AAT AAT AAAT AA- AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AA
8075654 ATATTTTTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
2 2 0.06
3 30 0.86
4 3 0.09
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:8075654 original size:9 final size:10
Alignment explanation
Indices: 8075603--8075656 Score: 53
Period size: 9 Copynumber: 5.8 Consensus size: 10
8075593 GCCTACAAAA
*
8075603 AATAAAAAAT
1 AATAAATAAT
* *
8075613 -ATTAATATT
1 AATAAATAAT
8075622 AAT-AATAAT
1 AATAAATAAT
8075631 AAT-AATAAT
1 AATAAATAAT
8075640 AATAAATAA-
1 AATAAATAAT
8075649 AATAAATA
1 AATAAATA
8075657 TTTTTTAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
9 31 0.82
10 7 0.18
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (10 bp):
AATAAATAAT
Found at i:8076704 original size:110 final size:110
Alignment explanation
Indices: 8076493--8076897 Score: 631
Period size: 110 Copynumber: 3.7 Consensus size: 110
8076483 TTCCCTTTGT
* *
8076493 TGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTATTTGCTGACAG-CAGTCGCCCCTTC
1 TGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTGACAGTCAGTCGCCCCTTC
* *
8076557 ACTGTGAAGTTGAGCTTGTGTTGCCTCGAGTCCAATATCATTCGC
66 GCTGTGAAGTTGAGCTTGTGTTGTCTCGAGTCCAATATCATTCGC
8076602 TGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTGACAGTCAGTCGCCCCTTC
1 TGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTGACAGTCAGTCGCCCCTTC
* * *
8076667 GTTGTGAAGTTGAGCTTGTGTTGTCTCGAGTCGAATATCTTTCGC
66 GCTGTGAAGTTGAGCTTGTGTTGTCTCGAGTCCAATATCATTCGC
* * * *
8076712 TGTGAAGTTAAAATTGACTCTTAATGAAACTGAAAAGTTGTTTGTTGATAGTCAGTCGCTCCTTC
1 TGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTGACAGTCAGTCGCCCCTTC
* * *
8076777 GCTGTGAAGTTGAGCTTGTGTTGTCTCGAATCTAATATCCTTCGC
66 GCTGTGAAGTTGAGCTTGTGTTGTCTCGAGTCCAATATCATTCGC
* *
8076822 TGTGAAGTTGAATTTGACTCTGAATGAAACTGAAAAGTTTTTTGTT-A-A-T-AGTCGCCCCTTC
1 TGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTGACAGTCAGTCGCCCCTTC
8076883 GCTGTGAAGTTGAGC
66 GCTGTGAAGTTGAGC
8076898 AACCACCATC
Statistics
Matches: 275, Mismatches: 20, Indels: 5
0.92 0.07 0.02
Matches are distributed among these distances:
106 26 0.09
107 1 0.00
108 1 0.00
109 50 0.18
110 197 0.72
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (110 bp):
TGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTGACAGTCAGTCGCCCCTTC
GCTGTGAAGTTGAGCTTGTGTTGTCTCGAGTCCAATATCATTCGC
Found at i:8083385 original size:20 final size:20
Alignment explanation
Indices: 8083360--8083456 Score: 158
Period size: 20 Copynumber: 4.8 Consensus size: 20
8083350 GCGATTTTCC
* *
8083360 TAAATCACAAAGCGAATACG
1 TAAATCGCAATGCGAATACG
8083380 TAAATCGCAATGCGAATACG
1 TAAATCGCAATGCGAATACG
8083400 TAAATCGCAATGCGAATACG
1 TAAATCGCAATGCGAATACG
*
8083420 TAAATCGCAATGCAAATACG
1 TAAATCGCAATGCGAATACG
*
8083440 TAAATCGCAACGCGAAT
1 TAAATCGCAATGCGAAT
8083457 CTGACTATCG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 72 1.00
ACGTcount: A:0.43, C:0.21, G:0.18, T:0.19
Consensus pattern (20 bp):
TAAATCGCAATGCGAATACG
Found at i:8083466 original size:20 final size:20
Alignment explanation
Indices: 8083443--8083506 Score: 110
Period size: 20 Copynumber: 3.2 Consensus size: 20
8083433 AAATACGTAA
*
8083443 ATCGCAACGCGAATCTGACT
1 ATCGCAACGCGATTCTGACT
*
8083463 ATCGCAACGAGATTCTGACT
1 ATCGCAACGCGATTCTGACT
8083483 ATCGCAACGCGATTCTGACT
1 ATCGCAACGCGATTCTGACT
8083503 ATCG
1 ATCG
8083507 TAATACTGAA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (20 bp):
ATCGCAACGCGATTCTGACT
Found at i:8084378 original size:24 final size:24
Alignment explanation
Indices: 8084351--8084404 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
8084341 GTATTCGAAA
8084351 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
8084375 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
8084399 TTTGAT
1 TTTGAT
8084405 GATTTTTCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:8086842 original size:20 final size:20
Alignment explanation
Indices: 8086817--8086927 Score: 161
Period size: 20 Copynumber: 5.5 Consensus size: 20
8086807 GACATTAATT
8086817 TGACTATCGCAACGC-GAATA
1 TGACTATCGCAACGCGGAA-A
* *
8086837 TGACTATCGCAACACGAAAA
1 TGACTATCGCAACGCGGAAA
*
8086857 TGACTATCGCAACGCAGAAA
1 TGACTATCGCAACGCGGAAA
* *
8086877 TGACCATCACAACGCGGAAA
1 TGACTATCGCAACGCGGAAA
8086897 TGACTATCGCAACGCGGAAA
1 TGACTATCGCAACGCGGAAA
8086917 TGACTATCGCA
1 TGACTATCGCA
8086928 TTGTGATTCT
Statistics
Matches: 80, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
20 78 0.98
21 2 0.03
ACGTcount: A:0.38, C:0.26, G:0.20, T:0.16
Consensus pattern (20 bp):
TGACTATCGCAACGCGGAAA
Found at i:8087106 original size:14 final size:14
Alignment explanation
Indices: 8087087--8087123 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
8087077 CATCAATTAA
8087087 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
8087101 ACAAATCATCTTTT
1 ACAAATCAACATTT
8087115 ACAAATCAA
1 ACAAATCAA
8087124 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:8088386 original size:42 final size:42
Alignment explanation
Indices: 8088307--8088399 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 42
8088297 CCTCTTCAAT
* * *
8088307 GATGACAGTGGCCTCTTGAACGGTGGGAGAGGACTCTTGAGG
1 GATGACAGGGGCCTCTTGAACGATAGGAGAGGACTCTTGAGG
* * **
8088349 GATGATAGGGGCCTCTTGAACGATAAGG-GAGGCCTCTTGAAC
1 GATGACAGGGGCCTCTTGAACGAT-AGGAGAGGACTCTTGAGG
8088391 GATGACAGG
1 GATGACAGG
8088400 TGAGTCTGGC
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
42 40 0.95
43 2 0.05
ACGTcount: A:0.25, C:0.17, G:0.38, T:0.20
Consensus pattern (42 bp):
GATGACAGGGGCCTCTTGAACGATAGGAGAGGACTCTTGAGG
Found at i:8088899 original size:20 final size:20
Alignment explanation
Indices: 8088876--8089080 Score: 215
Period size: 20 Copynumber: 10.4 Consensus size: 20
8088866 GAAACTTAAA
8088876 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
*
8088896 ATCGCAACGTGAAAATGACT
1 ATCGCAACGCGAAAATGACT
*
8088916 ATCGCAATGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
* **
8088936 ATCGCAATGCGAATTTGACT
1 ATCGCAACGCGAAAATGACT
*
8088956 ATCGCAA--CG-AGA-GA--
1 ATCGCAACGCGAAAATGACT
*
8088970 ATCGCAATGCGCAAAAATGACT
1 ATCGCAA--CGCGAAAATGACT
* *
8088992 AGCGCAACGCAAAAATGACT
1 ATCGCAACGCGAAAATGACT
8089012 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
* *
8089032 ATCACAATGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
* **
8089052 ATCGCAATGCGAATTTGACT
1 ATCGCAACGCGAAAATGACT
*
8089072 ATCACAACG
1 ATCGCAACG
8089081 AGAGAATCGC
Statistics
Matches: 158, Mismatches: 19, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
14 7 0.04
16 2 0.01
17 1 0.01
18 3 0.02
19 2 0.01
20 137 0.87
22 6 0.04
ACGTcount: A:0.40, C:0.22, G:0.20, T:0.19
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:8088998 original size:96 final size:94
Alignment explanation
Indices: 8088875--8089058 Score: 278
Period size: 96 Copynumber: 1.9 Consensus size: 94
8088865 TGAAACTTAA
* * ** * *
8088875 AATCGCAACGCGAAAATGACTATCGCAACGTGAAAATGACTATCGCAATGCGAAAATGACTATCG
1 AATCGCAACGCAAAAATGACTAGCGCAACGCAAAAATGACTATCGCAACGCGAAAATGACTATCA
**
8088940 CAATGCGAATTTGACTATCGCAACGAGAG
66 CAATGCGAAAATGACTATCGCAACGAGAG
8088969 AATCGCAATGCGCAAAAATGACTAGCGCAACGCAAAAATGACTATCGCAACGCGAAAATGACTAT
1 AATCGCAA--CGCAAAAATGACTAGCGCAACGCAAAAATGACTATCGCAACGCGAAAATGACTAT
8089034 CACAATGCGAAAATGACTATCGCAA
64 CACAATGCGAAAATGACTATCGCAA
8089059 TGCGAATTTG
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
94 8 0.10
96 72 0.90
ACGTcount: A:0.41, C:0.22, G:0.20, T:0.17
Consensus pattern (94 bp):
AATCGCAACGCAAAAATGACTAGCGCAACGCAAAAATGACTATCGCAACGCGAAAATGACTATCA
CAATGCGAAAATGACTATCGCAACGAGAG
Found at i:8089027 original size:116 final size:116
Alignment explanation
Indices: 8088878--8089096 Score: 402
Period size: 116 Copynumber: 1.9 Consensus size: 116
8088868 AACTTAAAAT
* * *
8088878 CGCAACGCGAAAATGACTATCGCAACGTGAAAATGACTATCGCAATGCGAAAATGACTATCGCAA
1 CGCAACGCAAAAATGACTATCGCAACGCGAAAATGACTATCACAATGCGAAAATGACTATCGCAA
*
8088943 TGCGAATTTGACTATCGCAACGAGAGAATCGCAATGCGCAAAAATGACTAG
66 TGCGAATTTGACTATCACAACGAGAGAATCGCAATGCGCAAAAATGACTAG
8088994 CGCAACGCAAAAATGACTATCGCAACGCGAAAATGACTATCACAATGCGAAAATGACTATCGCAA
1 CGCAACGCAAAAATGACTATCGCAACGCGAAAATGACTATCACAATGCGAAAATGACTATCGCAA
8089059 TGCGAATTTGACTATCACAACGAGAGAATCGCAATGCG
66 TGCGAATTTGACTATCACAACGAGAGAATCGCAATGCG
8089097 ATTTTCATTT
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
116 99 1.00
ACGTcount: A:0.39, C:0.22, G:0.21, T:0.18
Consensus pattern (116 bp):
CGCAACGCAAAAATGACTATCGCAACGCGAAAATGACTATCACAATGCGAAAATGACTATCGCAA
TGCGAATTTGACTATCACAACGAGAGAATCGCAATGCGCAAAAATGACTAG
Found at i:8089173 original size:20 final size:20
Alignment explanation
Indices: 8089123--8089242 Score: 89
Period size: 20 Copynumber: 5.6 Consensus size: 20
8089113 GCGATTCTTT
**
8089123 CATTGCGATAGTCAAATTCG
1 CATTGCGATAGTCATTTTCG
**
8089143 CATTGAAATAGTCATTTTCG
1 CATTGCGATAGTCATTTTCG
8089163 CATTGCGATAGTCATTTTCG
1 CATTGCGATAGTCATTTTCG
* *
8089183 -AGTTGCGATTTTGTTGTTGCGATTTTCT
1 CA-TTGCGA-----TAG-T-C-ATTTTCG
*
8089211 CGTTGCGATAGTCATTTTCG
1 CATTGCGATAGTCATTTTCG
8089231 CATTGCGATAGT
1 CATTGCGATAGT
8089243 AAACTATTCT
Statistics
Matches: 78, Mismatches: 12, Indels: 20
0.71 0.11 0.18
Matches are distributed among these distances:
19 1 0.01
20 57 0.73
21 1 0.01
22 1 0.01
23 2 0.03
25 2 0.03
26 1 0.01
27 1 0.01
28 12 0.15
ACGTcount: A:0.21, C:0.17, G:0.22, T:0.41
Consensus pattern (20 bp):
CATTGCGATAGTCATTTTCG
Found at i:8089201 original size:14 final size:14
Alignment explanation
Indices: 8089184--8089219 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
8089174 TCATTTTCGA
* *
8089184 GTTGCGATTTTGTT
1 GTTGCGATTTTCTC
8089198 GTTGCGATTTTCTC
1 GTTGCGATTTTCTC
8089212 GTTGCGAT
1 GTTGCGAT
8089220 AGTCATTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.08, C:0.14, G:0.28, T:0.50
Consensus pattern (14 bp):
GTTGCGATTTTCTC
Found at i:8091261 original size:73 final size:73
Alignment explanation
Indices: 8091141--8091315 Score: 278
Period size: 73 Copynumber: 2.4 Consensus size: 73
8091131 CGAAAATGAA
* ** * *
8091141 AATCGCAACACGAAAATGACTATCGCAACACGAAAATGACTATCGCAACGTGAATTTGACTATCG
1 AATCGCAACGCG-AAATGAAAATCGCAACACGAAAATGACTATCGCAACGCGAATTTAACTATCG
8091206 CAACGCAAG
65 CAACGCAAG
8091215 AATCGCAACGCGAAATGAAAATCGCAACACGAAAATGACTATCGCAACGCGAATTTAACTATCGC
1 AATCGCAACGCGAAATGAAAATCGCAACACGAAAATGACTATCGCAACGCGAATTTAACTATCGC
8091280 AACGCAAG
66 AACGCAAG
* *
8091288 AATCGTAACGCGAAATGAAAATTGCAAC
1 AATCGCAACGCGAAATGAAAATCGCAAC
8091316 GACAGAATCA
Statistics
Matches: 94, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
73 83 0.88
74 11 0.12
ACGTcount: A:0.42, C:0.23, G:0.18, T:0.17
Consensus pattern (73 bp):
AATCGCAACGCGAAATGAAAATCGCAACACGAAAATGACTATCGCAACGCGAATTTAACTATCGC
AACGCAAG
Found at i:8091275 original size:20 final size:20
Alignment explanation
Indices: 8091122--8091284 Score: 133
Period size: 20 Copynumber: 8.5 Consensus size: 20
8091112 GAAACTTAAA
* * **
8091122 ATCGCAACACGAAAATGAAA
1 ATCGCAACGCGAAATTGACT
* *
8091142 ATCGCAACACGAAAATGACT
1 ATCGCAACGCGAAATTGACT
* *
8091162 ATCGCAACACGAAAATGACT
1 ATCGCAACGCGAAATTGACT
* *
8091182 ATCGCAACGTGAATTTGACT
1 ATCGCAACGCGAAATTGACT
8091202 ATCGCAACGC--AA--GA--
1 ATCGCAACGCGAAATTGACT
**
8091216 ATCGCAACGCGAAA-TGAAA
1 ATCGCAACGCGAAATTGACT
* *
8091235 ATCGCAACACGAAAATGACT
1 ATCGCAACGCGAAATTGACT
* *
8091255 ATCGCAACGCGAATTTAACT
1 ATCGCAACGCGAAATTGACT
8091275 ATCGCAACGC
1 ATCGCAACGC
8091285 AAGAATCGTA
Statistics
Matches: 122, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
14 10 0.08
16 4 0.03
17 2 0.02
18 1 0.01
19 13 0.11
20 92 0.75
ACGTcount: A:0.42, C:0.25, G:0.17, T:0.16
Consensus pattern (20 bp):
ATCGCAACGCGAAATTGACT
Found at i:8091713 original size:22 final size:22
Alignment explanation
Indices: 8091651--8091716 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
8091641 TAACCGTGAA
* * * *
8091651 TGATTTCGCCAGATATGGAGAC
1 TGATTTCGTCGGAGATGGGGAC
*
8091673 TGATATCGTCGGAGATGGGGAC
1 TGATTTCGTCGGAGATGGGGAC
8091695 TGATTTCGTCGGAGATGGGGAC
1 TGATTTCGTCGGAGATGGGGAC
8091717 GGATGTTACC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.23, C:0.15, G:0.36, T:0.26
Consensus pattern (22 bp):
TGATTTCGTCGGAGATGGGGAC
Found at i:8091936 original size:20 final size:20
Alignment explanation
Indices: 8091913--8092045 Score: 203
Period size: 20 Copynumber: 6.7 Consensus size: 20
8091903 CGATAGTCCA
8091913 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
*
8091933 ATTCGCATTGCGATTTATGT
1 ATTCGCATTGCGATTTACGT
** *
8091953 ATTCATATTGCGATTTACAT
1 ATTCGCATTGCGATTTACGT
*
8091973 AGTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
* *
8091993 ATTCACATTACGATTTACGT
1 ATTCGCATTGCGATTTACGT
8092013 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
8092033 ATTCGCATTGCGA
1 ATTCGCATTGCGA
8092046 ATTAGGAAAA
Statistics
Matches: 99, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 99 1.00
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (20 bp):
ATTCGCATTGCGATTTACGT
Found at i:8092066 original size:21 final size:21
Alignment explanation
Indices: 8092042--8092087 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
8092032 TATTCGCATT
8092042 GCGAATTAGGAAAATCGCAAC
1 GCGAATTAGGAAAATCGCAAC
* *
8092063 GCGAATTTGGAAAATCGCAAT
1 GCGAATTAGGAAAATCGCAAC
8092084 GCGA
1 GCGA
8092088 TAGTCAGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.17, G:0.26, T:0.17
Consensus pattern (21 bp):
GCGAATTAGGAAAATCGCAAC
Found at i:8098881 original size:21 final size:20
Alignment explanation
Indices: 8098837--8098882 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
8098827 CTTAATTGCG
* *
8098837 AAAATTTAAAAATTTAAATA
1 AAAATTTAAAAATTTAATTC
8098857 AAAATTTAAAAAATTTAATTC
1 AAAATTT-AAAAATTTAATTC
8098878 AAAAT
1 AAAAT
8098883 AATTACCTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (20 bp):
AAAATTTAAAAATTTAATTC
Found at i:8102786 original size:32 final size:32
Alignment explanation
Indices: 8102721--8102789 Score: 93
Period size: 32 Copynumber: 2.2 Consensus size: 32
8102711 TCGTCACCAT
* * *
8102721 GGCCACAGAAAGAATCATGCTTACAACATTAA
1 GGCCACACAAACAATCATGCTTACAACACTAA
**
8102753 GGCCACACAAACAATCATGCTTACGCCACTAA
1 GGCCACACAAACAATCATGCTTACAACACTAA
8102785 GGCCA
1 GGCCA
8102790 ATATAAACTC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.39, C:0.29, G:0.16, T:0.16
Consensus pattern (32 bp):
GGCCACACAAACAATCATGCTTACAACACTAA
Found at i:8104036 original size:20 final size:21
Alignment explanation
Indices: 8103983--8104050 Score: 77
Period size: 21 Copynumber: 3.3 Consensus size: 21
8103973 GTTTACAATT
8103983 TCGCAACGTGAATAGTAAAAA
1 TCGCAACGTGAATAGTAAAAA
*
8104004 TCGCACCGTGAATAGT-AAAA
1 TCGCAACGTGAATAGTAAAAA
* * *
8104024 TTGCAACGCGAAT-TTAAAAAA
1 TCGCAACGTGAATAGT-AAAAA
8104045 TCGCAA
1 TCGCAA
8104051 AATCGCGTTG
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
19 1 0.03
20 14 0.36
21 24 0.62
ACGTcount: A:0.44, C:0.18, G:0.18, T:0.21
Consensus pattern (21 bp):
TCGCAACGTGAATAGTAAAAA
Found at i:8104423 original size:21 final size:21
Alignment explanation
Indices: 8104398--8104437 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
8104388 TATAGATTTG
8104398 TTGCGATTTTTACTATTCATA
1 TTGCGATTTTTACTATTCATA
8104419 TTGCGATTTTTACTATTCA
1 TTGCGATTTTTACTATTCA
8104438 CGTTGCAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.23, C:0.15, G:0.10, T:0.53
Consensus pattern (21 bp):
TTGCGATTTTTACTATTCATA
Found at i:8104443 original size:21 final size:21
Alignment explanation
Indices: 8104397--8104443 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
8104387 ATATAGATTT
*
8104397 GTTGCGATTTTTACTATTCAT
1 GTTGCGATTTTTACTATTCAC
*
8104418 ATTGCGATTTTTACTATTCAC
1 GTTGCGATTTTTACTATTCAC
8104439 GTTGC
1 GTTGC
8104444 AAATTTAACT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (21 bp):
GTTGCGATTTTTACTATTCAC
Found at i:8104483 original size:40 final size:40
Alignment explanation
Indices: 8104419--8104610 Score: 176
Period size: 40 Copynumber: 4.8 Consensus size: 40
8104409 ACTATTCATA
* * * *
8104419 TTGCGATTTTTACTATTCACGTTGCAAATTTAACTTTCGCG
1 TTGCGAATTTGACTA-TCGCGTTGCAAATTTGACTTTCGCG
* * * * *
8104460 TTGCAAATTTGACTTTTGTGTTGCAAATTTGACTATCGCG
1 TTGCGAATTTGACTATCGCGTTGCAAATTTGACTTTCGCG
* *
8104500 TTGCGAATTTGACTATCGCGTTG-AGAATTTGACTTTTGTG
1 TTGCGAATTTGACTATCGCGTTGCA-AATTTGACTTTCGCG
* * *
8104540 TTGCGAATTTGACTATCTCGTTGCGAATTTGAC-TTCTGTG
1 TTGCGAATTTGACTATCGCGTTGCAAATTTGACTTTC-GCG
*
8104580 TTGCG-ATTT-ACATATTCGCGTTGCGAATTTG
1 TTGCGAATTTGAC-TA-TCGCGTTGCAAATTTG
8104611 GAAAATCGCA
Statistics
Matches: 126, Mismatches: 20, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
38 2 0.02
39 9 0.07
40 104 0.83
41 11 0.09
ACGTcount: A:0.20, C:0.16, G:0.21, T:0.43
Consensus pattern (40 bp):
TTGCGAATTTGACTATCGCGTTGCAAATTTGACTTTCGCG
Found at i:8104503 original size:60 final size:60
Alignment explanation
Indices: 8104438--8104574 Score: 213
Period size: 60 Copynumber: 2.3 Consensus size: 60
8104428 TTACTATTCA
* *
8104438 CGTTGCAAATTTAACTTTCGCGTTGCA-AATTTGACTTTTGTGTTGCAAATTTGACTATCG
1 CGTTGCGAATTTGACTTTCGCGTTG-AGAATTTGACTTTTGTGTTGCAAATTTGACTATCG
* * *
8104498 CGTTGCGAATTTGACTATCGCGTTGAGAATTTGACTTTTGTGTTGCGAATTTGACTATCT
1 CGTTGCGAATTTGACTTTCGCGTTGAGAATTTGACTTTTGTGTTGCAAATTTGACTATCG
8104558 CGTTGCGAATTTGACTT
1 CGTTGCGAATTTGACTT
8104575 CTGTGTTGCG
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
59 1 0.01
60 69 0.99
ACGTcount: A:0.21, C:0.16, G:0.21, T:0.42
Consensus pattern (60 bp):
CGTTGCGAATTTGACTTTCGCGTTGAGAATTTGACTTTTGTGTTGCAAATTTGACTATCG
Found at i:8104582 original size:20 final size:21
Alignment explanation
Indices: 8104438--8104610 Score: 159
Period size: 20 Copynumber: 8.6 Consensus size: 21
8104428 TTACTATTCA
* * *
8104438 CGTTGCAAATTTAACTTTC-G
1 CGTTGCGAATTTGACTATCTG
* *
8104458 CGTTGCAAATTTGACT-TTTG
1 CGTTGCGAATTTGACTATCTG
* *
8104478 TGTTGCAAATTTGACTATC-G
1 CGTTGCGAATTTGACTATCTG
8104498 CGTTGCGAATTTGACTATC-G
1 CGTTGCGAATTTGACTATCTG
* *
8104518 CGTTGAGAATTTGACT-TTTG
1 CGTTGCGAATTTGACTATCTG
*
8104538 TGTTGCGAATTTGACTATCT-
1 CGTTGCGAATTTGACTATCTG
8104558 CGTTGCGAATTTGACT-TCTG
1 CGTTGCGAATTTGACTATCTG
*
8104578 TGTTGCG-ATTT-ACATAT-TCG
1 CGTTGCGAATTTGAC-TATCT-G
8104598 CGTTGCGAATTTG
1 CGTTGCGAATTTG
8104611 GAAAATCGCA
Statistics
Matches: 129, Mismatches: 14, Indels: 18
0.80 0.09 0.11
Matches are distributed among these distances:
18 2 0.02
19 11 0.09
20 109 0.84
21 7 0.05
ACGTcount: A:0.20, C:0.16, G:0.22, T:0.42
Consensus pattern (21 bp):
CGTTGCGAATTTGACTATCTG
Found at i:8104603 original size:60 final size:60
Alignment explanation
Indices: 8104419--8104610 Score: 185
Period size: 60 Copynumber: 3.2 Consensus size: 60
8104409 ACTATTCATA
* * * * * * * *
8104419 TTGCGATTTTTACTATTCACGTTGCAAATTTAACTTTCGCGTTGCA-AATTTGACTTTTGTG
1 TTGCGAATTTGACTA-TCGCGTTGCGAATTTGACTATCGCGTTG-AGAATTTGACTTTCGCG
* * *
8104480 TTGCAAATTTGACTATCGCGTTGCGAATTTGACTATCGCGTTGAGAATTTGACTTTTGTG
1 TTGCGAATTTGACTATCGCGTTGCGAATTTGACTATCGCGTTGAGAATTTGACTTTCGCG
* * *
8104540 TTGCGAATTTGACTATCTCGTTGCGAATTTGACT-TCTGTGTTGCG-ATTT-ACATATTCGCG
1 TTGCGAATTTGACTATCGCGTTGCGAATTTGACTATC-GCGTTGAGAATTTGAC-T-TTCGCG
8104600 TTGCGAATTTG
1 TTGCGAATTTG
8104611 GAAAATCGCA
Statistics
Matches: 114, Mismatches: 13, Indels: 9
0.84 0.10 0.07
Matches are distributed among these distances:
58 2 0.02
59 8 0.07
60 92 0.81
61 12 0.11
ACGTcount: A:0.20, C:0.16, G:0.21, T:0.43
Consensus pattern (60 bp):
TTGCGAATTTGACTATCGCGTTGCGAATTTGACTATCGCGTTGAGAATTTGACTTTCGCG
Found at i:8106549 original size:16 final size:17
Alignment explanation
Indices: 8106518--8106552 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
8106508 ATTTTTTATT
8106518 TTAAATATTATATAAAA
1 TTAAATATTATATAAAA
8106535 TTAAATATT-TATAAAA
1 TTAAATATTATATAAAA
8106551 TT
1 TT
8106553 GTCAGATCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
TTAAATATTATATAAAA
Found at i:8109434 original size:15 final size:14
Alignment explanation
Indices: 8109414--8109460 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 14
8109404 TAAACATATG
8109414 TAATAAAATTATTAA
1 TAATAAAA-TATTAA
8109429 TAAT-AAATA-TAA
1 TAATAAAATATTAA
*
8109441 TAATAATAATATTGA
1 TAATAA-AATATTAA
8109456 TAATA
1 TAATA
8109461 TTTTTTTAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
12 7 0.25
13 3 0.11
14 7 0.25
15 11 0.39
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (14 bp):
TAATAAAATATTAA
Found at i:8110044 original size:241 final size:244
Alignment explanation
Indices: 8109617--8110062 Score: 677
Period size: 241 Copynumber: 1.8 Consensus size: 244
8109607 GCGTTGGATT
* **
8109617 GAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCGTTGGATGAGTTCTTCTCATTATGAACTC
1 GAACAAGTTCTTCTCATTATGAACTTCTTCATCCTC-TTGGACAAGTTCTTCTCATTATGAACTC
* *
8109682 TACATTAAAATGTCAATCCCTCAAGCGAGGTGTCACTGATTCGAAACGTCGTTATCAAGTGATAG
65 TACATGAAAATGTCAATCCCTCAAGCGAGGTGTCACTGATTCGAAACGTCGTAATCAAGTGATAG
* *
8109747 GTCAAACAAGTTCTTCTCATTATAAACTTATTATCCCTCTGTCGGATGAGTTCTTCTCATTATGA
130 GTCAAACAAGCTCTTCTCATTATAAACTTATTATCCCACTGTCGGATGAGTTCTTCTCATTATGA
8109812 ACTCTCCATTAAAAATGTTGATCCACCTCTTTCTATGATGGAATCGAAAG
195 ACTCTCCATTAAAAATGTTGATCCACCTCTTTCTATGATGGAATCGAAAG
*
8109862 GAACAAGTTCTTCTCATTATGAA-TT-TT-ATCCT-TTAGGACAAGTTCTTTTCATTATGAACTC
1 GAACAAGTTCTTCTCATTATGAACTTCTTCATCCTCTT-GGACAAGTTCTTCTCATTATGAACTC
* * * * *
8109923 TTC-TGGAAATGTCAATCCCTCATGCGAGGTGTCACTGATTCGAAATGTCGTGAATCGAGTGATA
65 TACATGAAAATGTCAATCCCTCAAGCGAGGTGTCACTGATTCGAAACGTCGT-AATCAAGTGATA
* * * *
8109987 GGTCGAACAAGCTCTTCTCATTATGAACTTCTTCTCCCACTGTCGGATGAGTTCTTCTCATTATG
129 GGTCAAACAAGCTCTTCTCATTATAAACTTATTATCCCACTGTCGGATGAGTTCTTCTCATTATG
8110052 AACTCTCCATT
194 AACTCTCCATT
8110063 GGAAATGTCA
Statistics
Matches: 182, Mismatches: 17, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
240 46 0.25
241 105 0.58
242 4 0.02
243 2 0.01
244 2 0.01
245 23 0.13
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (244 bp):
GAACAAGTTCTTCTCATTATGAACTTCTTCATCCTCTTGGACAAGTTCTTCTCATTATGAACTCT
ACATGAAAATGTCAATCCCTCAAGCGAGGTGTCACTGATTCGAAACGTCGTAATCAAGTGATAGG
TCAAACAAGCTCTTCTCATTATAAACTTATTATCCCACTGTCGGATGAGTTCTTCTCATTATGAA
CTCTCCATTAAAAATGTTGATCCACCTCTTTCTATGATGGAATCGAAAG
Found at i:8110187 original size:133 final size:135
Alignment explanation
Indices: 8109902--8110341 Score: 555
Period size: 133 Copynumber: 3.2 Consensus size: 135
8109892 CTTTAGGACA
* * *
8109902 AGTTCTTTTCATTATGAACTCTTC--TGGAAATGTCAATCCCTCATGCGAGGTGTCACTGATTCG
1 AGTTCTTCTCATTATGAACTCTCCATTGGAAATGTCAATCCCTCAAGCGAGGTGTCACTGATTCG
** *
8109965 AAATGTCGTGAATCGAGTGATAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCTCCCACTGT
66 AAATACCATGAATCGAGTGATAGGTC-AACAAGCTCTTCTCATTATGAACTTCTTCTCCCACTGT
8110030 CGGATG
130 CGGATG
* *
8110036 AGTTCTTCTCATTATGAACTCTCCATTGGAAATGTCAATCCCTTAAGCGAGGTGTCACTGATTTG
1 AGTTCTTCTCATTATGAACTCTCCATTGGAAATGTCAATCCCTCAAGCGAGGTGTCACTGATTCG
* *
8110101 AAATACCATGAATCGAGTGATA-GT-AACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCTTTC
66 AAATACCATGAATCGAGTGATAGGTCAACAAGCTCTTCTCATTATGAACTTCTTCTCCCACTGTC
8110164 GGATG
131 GGATG
* * *
8110169 AGTTCTTCTCATTATGAACTCTCAATTGGAAATGTTAATCCCTCAAACGAGGTGTCACTGATTCG
1 AGTTCTTCTCATTATGAACTCTCCATTGGAAATGTCAATCCCTCAAGCGAGGTGTCACTGATTCG
8110234 AAATACCCTGATTTGAAATGCCGTGAATCGAGTGATAGGTCGAACAAGCTCTTCTCATTATGAAC
66 AAATA-CC---------A-----TGAATCGAGTGATAGGTC-AACAAGCTCTTCTCATTATGAAC
* *
8110299 TTCTTCTCCCTCTATCGGATG
115 TTCTTCTCCCACTGTCGGATG
*
8110320 AGTTCTTCTTATTATGAACTCT
1 AGTTCTTCTCATTATGAACTCT
8110342 GTACTGGAAA
Statistics
Matches: 269, Mismatches: 17, Indels: 23
0.87 0.06 0.07
Matches are distributed among these distances:
133 107 0.40
134 24 0.09
135 2 0.01
136 55 0.20
143 1 0.00
148 14 0.05
149 2 0.01
151 64 0.24
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (135 bp):
AGTTCTTCTCATTATGAACTCTCCATTGGAAATGTCAATCCCTCAAGCGAGGTGTCACTGATTCG
AAATACCATGAATCGAGTGATAGGTCAACAAGCTCTTCTCATTATGAACTTCTTCTCCCACTGTC
GGATG
Found at i:8110543 original size:90 final size:89
Alignment explanation
Indices: 8110390--8110620 Score: 390
Period size: 90 Copynumber: 2.6 Consensus size: 89
8110380 ATTTTCAGAC
* * *
8110390 AGATGACCCGAAGGATTTAAAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATTTTATTTGA
1 AGATGACCCGAAGGACTTAAAAATCAAGAAACCCCCGAAGGCTTAGTTTC-TAAATCTCATTTGA
8110455 AAACATCCTGCACTGAAGGTCTTAT
65 AAACATCCTGCACTGAAGGTCTTAT
8110480 AGATGACCCGAAGGACTTAAAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAGATCTCATTTGA
1 AGATGACCCGAAGGACTTAAAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAA-ATCTCATTTGA
8110545 AAACATCCTGCACTGAAGGTCTTAT
65 AAACATCCTGCACTGAAGGTCTTAT
* * *
8110570 GGATGGCCCGAAGGACTTAAAAATCAAGAAACCCCCGAAGGCTCAGTTTCT
1 AGATGACCCGAAGGACTTAAAAATCAAGAAACCCCCGAAGGCTTAGTTTCT
8110621 TAATTGTCAC
Statistics
Matches: 134, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
89 3 0.02
90 131 0.98
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.25
Consensus pattern (89 bp):
AGATGACCCGAAGGACTTAAAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTAT
Found at i:8110733 original size:43 final size:43
Alignment explanation
Indices: 8110672--8111018 Score: 431
Period size: 43 Copynumber: 8.1 Consensus size: 43
8110662 TAAGTGTTCA
*
8110672 TCAAGTTTGTCATCAAGAAACCCCTACATATCACGATGGTCTC
1 TCAAGCTTGTCATCAAGAAACCCCTACATATCACGATGGTCTC
* * ** *
8110715 TCAAGCATATCATCAAGAAACCCCTACATATCACGATAATCGC
1 TCAAGCTTGTCATCAAGAAACCCCTACATATCACGATGGTCTC
*
8110758 TCAAGCATGTCATCAA-AGAACCCCTACATATCACGATGGTC-C
1 TCAAGCTTGTCATCAAGA-AACCCCTACATATCACGATGGTCTC
* * *
8110800 TTTAAGCTTGTTATCAAGAAACCCCTATATATCACGATGGTC-C
1 -TCAAGCTTGTCATCAAGAAACCCCTACATATCACGATGGTCTC
*
8110843 TTCAAGCTTATCATCAAGAAACCCCTACATATCACGAT-GTCTTC
1 -TCAAGCTTGTCATCAAGAAACCCCTACATATCACGATGGTC-TC
8110887 TCAAGCTTGTCATCAA-AGAACCCCTA-ATATCACGATGGTCAT-
1 TCAAGCTTGTCATCAAGA-AACCCCTACATATCACGATGGTC-TC
* *
8110929 TTAAGCTTGTCATCAAGGAACCCCTACATATCACGATGGTC-C
1 TCAAGCTTGTCATCAAGAAACCCCTACATATCACGATGGTCTC
* * *
8110971 TTCAAGCTTTTCATCAAGAAACCCCTGCATATCACGATGGTTTC
1 -TCAAGCTTGTCATCAAGAAACCCCTACATATCACGATGGTCTC
8111015 TCAA
1 TCAA
8111019 AATATTGTGT
Statistics
Matches: 266, Mismatches: 26, Indels: 24
0.84 0.08 0.08
Matches are distributed among these distances:
42 39 0.15
43 224 0.84
44 3 0.01
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.27
Consensus pattern (43 bp):
TCAAGCTTGTCATCAAGAAACCCCTACATATCACGATGGTCTC
Found at i:8110978 original size:128 final size:130
Alignment explanation
Indices: 8110678--8111018 Score: 539
Period size: 128 Copynumber: 2.7 Consensus size: 130
8110668 TTCATCAAGT
*
8110678 TTGTCATCAAGAAACCCCTACATATCACGATGGT-CTCTCAAGCATATCATCAAGAAACCCCTAC
1 TTGTCATCAAGAAACCCCTACATATCACGATGGTCCT-TCAAGCTTATCATCAAGAAACCCCTAC
* * *
8110742 ATATCACGATAATC-GCTCAAGCATGTCATCAAAGAACCCCTACATATCACGATGGTCCTTTAAG
65 ATATCACGATAGTCTTCTCAAGCATGTCATCAAAGAACCCCTACATATCACGATGGTCATTTAAG
8110806 C
130 C
* *
8110807 TTGTTATCAAGAAACCCCTATATATCACGATGGTCCTTCAAGCTTATCATCAAGAAACCCCTACA
1 TTGTCATCAAGAAACCCCTACATATCACGATGGTCCTTCAAGCTTATCATCAAGAAACCCCTACA
*
8110872 TATCACGAT-GTCTTCTCAAGCTTGTCATCAAAGAACCCCTA-ATATCACGATGGTCATTTAAGC
66 TATCACGATAGTCTTCTCAAGCATGTCATCAAAGAACCCCTACATATCACGATGGTCATTTAAGC
* * *
8110935 TTGTCATCAAGGAACCCCTACATATCACGATGGTCCTTCAAGCTTTTCATCAAGAAACCCCTGCA
1 TTGTCATCAAGAAACCCCTACATATCACGATGGTCCTTCAAGCTTATCATCAAGAAACCCCTACA
*
8111000 TATCACGATGGT-TTCTCAA
66 TATCACGATAGTCTTCTCAA
8111019 AATATTGTGT
Statistics
Matches: 197, Mismatches: 12, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
128 99 0.50
129 96 0.49
130 2 0.01
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.27
Consensus pattern (130 bp):
TTGTCATCAAGAAACCCCTACATATCACGATGGTCCTTCAAGCTTATCATCAAGAAACCCCTACA
TATCACGATAGTCTTCTCAAGCATGTCATCAAAGAACCCCTACATATCACGATGGTCATTTAAGC
Found at i:8111076 original size:39 final size:38
Alignment explanation
Indices: 8111017--8111298 Score: 279
Period size: 39 Copynumber: 7.4 Consensus size: 38
8111007 ATGGTTTCTC
* * * * *
8111017 AAAATATTGTGTTTCGAGTGAAACTATCTCAAACGAGAT
1 AAAATCTT-TGTTTCAAGGGAAACTGTCTCAAGCGAGAT
* * * *
8111056 AAAATCTTCTGTTTCAAGTGAAATTGTCTCAAGGGAAAT
1 AAAATCTT-TGTTTCAAGGGAAACTGTCTCAAGCGAGAT
* *
8111095 AAAA--TTTGTTTCAAGGGAAACTGTCTCAAGGGAGAC
1 AAAATCTTTGTTTCAAGGGAAACTGTCTCAAGCGAGAT
*
8111131 AAAA--TTTGTTTCAAGGGAAACTGTCTCAAGAGAGA-
1 AAAATCTTTGTTTCAAGGGAAACTGTCTCAAGCGAGAT
* * *
8111166 AAAAAC-TCGTTTCTAGGGAAACTGTCTCAAGCGAGAT
1 AAAATCTTTGTTTCAAGGGAAACTGTCTCAAGCGAGAT
*
8111203 AAAATCTTTTGTTTCAAGGGAAACTATCTCAAGCGAGAT
1 AAAATC-TTTGTTTCAAGGGAAACTGTCTCAAGCGAGAT
* ** * **
8111242 AAAATCTTTGTTTCAAGGAAAAACAATATTGAGCGAGAT
1 AAAATCTTTGTTTCAAGG-GAAACTGTCTCAAGCGAGAT
8111281 AAAATCTTCTGTTTCAAG
1 AAAATCTT-TGTTTCAAG
8111299 AAAAAACAAT
Statistics
Matches: 211, Mismatches: 25, Indels: 13
0.85 0.10 0.05
Matches are distributed among these distances:
35 4 0.02
36 87 0.41
37 7 0.03
38 12 0.06
39 92 0.44
40 9 0.04
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.29
Consensus pattern (38 bp):
AAAATCTTTGTTTCAAGGGAAACTGTCTCAAGCGAGAT
Found at i:8111120 original size:36 final size:36
Alignment explanation
Indices: 8111026--8111259 Score: 252
Period size: 36 Copynumber: 6.3 Consensus size: 36
8111016 CAAAATATTG
* * * *
8111026 TGTTTCGAGTGAAACTATCTCAAACGAGATAAAATCTT
1 TGTTTCAAGGGAAACTGTCTCAAGCGAGATAAAA--TT
* * * *
8111064 CTGTTTCAAGTGAAATTGTCTCAAGGGAAATAAAATT
1 -TGTTTCAAGGGAAACTGTCTCAAGCGAGATAAAATT
* *
8111101 TGTTTCAAGGGAAACTGTCTCAAGGGAGACAAAATT
1 TGTTTCAAGGGAAACTGTCTCAAGCGAGATAAAATT
* * *
8111137 TGTTTCAAGGGAAACTGTCTCAAGAGAGAAAAAACT
1 TGTTTCAAGGGAAACTGTCTCAAGCGAGATAAAATT
* *
8111173 CGTTTCTAGGGAAACTGTCTCAAGCGAGATAAAATCTTT
1 TGTTTCAAGGGAAACTGTCTCAAGCGAGATAAAA---TT
*
8111212 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTT
1 TGTTTCAAGGGAAACTGTCTCAAGCGAGATAAAA--TT
8111250 TGTTTCAAGG
1 TGTTTCAAGG
8111260 AAAAACAATA
Statistics
Matches: 169, Mismatches: 23, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
36 95 0.56
37 2 0.01
38 12 0.07
39 60 0.36
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.29
Consensus pattern (36 bp):
TGTTTCAAGGGAAACTGTCTCAAGCGAGATAAAATT
Found at i:8111305 original size:40 final size:38
Alignment explanation
Indices: 8111195--8111326 Score: 156
Period size: 39 Copynumber: 3.4 Consensus size: 38
8111185 AACTGTCTCA
** * **
8111195 AGCGAGATAAAATCTTTTGTTTCAAGGGAAACTATCTCA
1 AGCGAGATAAAATC-TTTGTTTCAAGAAAAACAATCTTG
*
8111234 AGCGAGATAAAATCTTTGTTTCAAGGAAAAACAATATTG
1 AGCGAGATAAAATCTTTGTTTCAA-GAAAAACAATCTTG
8111273 AGCGAGATAAAATCTTCTGTTTCAAGAAAAAACAATCTTG
1 AGCGAGATAAAATCTT-TGTTTCAAG-AAAAACAATCTTG
**
8111313 AATGAGATAAAATC
1 AGCGAGATAAAATC
8111327 CAAGTAAGAC
Statistics
Matches: 81, Mismatches: 9, Indels: 5
0.85 0.09 0.05
Matches are distributed among these distances:
38 10 0.12
39 39 0.48
40 32 0.40
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (38 bp):
AGCGAGATAAAATCTTTGTTTCAAGAAAAACAATCTTG
Found at i:8116014 original size:6 final size:6
Alignment explanation
Indices: 8116003--8116085 Score: 62
Period size: 6 Copynumber: 13.5 Consensus size: 6
8115993 GCAAAGATGA
* * * * **
8116003 AAATGC AAATGC AAATGC AAA--A AAATGA AAATGT AAATAC AAACGTAA
1 AAATGC AAATGC AAATGC AAATGC AAATGC AAATGC AAATGC AAA--TGC
8116051 AAATGC AAAGATGC AAATGC AAATGC AAATGC AAA
1 AAATGC -AA-ATGC AAATGC AAATGC AAATGC AAA
8116086 AGGTATCGAT
Statistics
Matches: 64, Mismatches: 7, Indels: 12
0.77 0.08 0.14
Matches are distributed among these distances:
4 3 0.05
6 48 0.75
7 4 0.06
8 9 0.14
ACGTcount: A:0.58, C:0.12, G:0.14, T:0.16
Consensus pattern (6 bp):
AAATGC
Found at i:8116030 original size:28 final size:28
Alignment explanation
Indices: 8115999--8116079 Score: 94
Period size: 28 Copynumber: 2.9 Consensus size: 28
8115989 TTATGCAAAG
8115999 ATGAAAATGCAAATGCAAATGCAAAAAA
1 ATGAAAATGCAAATGCAAATGCAAAAAA
* * **
8116027 ATGAAAATGTAAATACAAA--CGTAAAA
1 ATGAAAATGCAAATGCAAATGCAAAAAA
8116053 ATGCAAAGATGCAAATGCAAATGCAAA
1 ATG-AAA-ATGCAAATGCAAATGCAAA
8116080 TGCAAAAGGT
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
26 8 0.20
27 3 0.07
28 28 0.68
30 2 0.05
ACGTcount: A:0.58, C:0.11, G:0.15, T:0.16
Consensus pattern (28 bp):
ATGAAAATGCAAATGCAAATGCAAAAAA
Found at i:8116034 original size:22 final size:22
Alignment explanation
Indices: 8116002--8116045 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
8115992 TGCAAAGATG
* *
8116002 AAAATGCAAATGCAAATGCAAA
1 AAAATGAAAATGCAAATACAAA
*
8116024 AAAATGAAAATGTAAATACAAA
1 AAAATGAAAATGCAAATACAAA
8116046 CGTAAAAATG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.64, C:0.09, G:0.11, T:0.16
Consensus pattern (22 bp):
AAAATGAAAATGCAAATACAAA
Found at i:8118262 original size:15 final size:16
Alignment explanation
Indices: 8118237--8118281 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
8118227 CTAAAAACGT
8118237 ATTTTAA-AAAAAT-A
1 ATTTTAAGAAAAATCA
8118251 ATTTTAAGAAAAATCA
1 ATTTTAAGAAAAATCA
*
8118267 TTTTTAAGACAAAAT
1 ATTTTAAGA-AAAAT
8118282 TAATCTGCGT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 7 0.26
15 6 0.22
16 9 0.33
17 5 0.19
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.36
Consensus pattern (16 bp):
ATTTTAAGAAAAATCA
Found at i:8120313 original size:20 final size:21
Alignment explanation
Indices: 8120288--8120327 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
8120278 TGGGCTTAAG
8120288 CTTGTAATGGTGGA-CTGAAC
1 CTTGTAATGGTGGATCTGAAC
* *
8120308 CTTGTACTGTTGGATCTGAA
1 CTTGTAATGGTGGATCTGAA
8120328 TATTGGACCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.35
Consensus pattern (21 bp):
CTTGTAATGGTGGATCTGAAC
Found at i:8121413 original size:2 final size:2
Alignment explanation
Indices: 8121408--8121436 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8121398 CCAAAATCCG
8121408 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8121437 CCAAATCTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8122173 original size:19 final size:20
Alignment explanation
Indices: 8122143--8122183 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
8122133 TTTTGTTAAA
*
8122143 GTCAACAGTCAATGGGTCGG
1 GTCAACAGTCAACGGGTCGG
8122163 GTCAA-AGTCAACGGGTCGG
1 GTCAACAGTCAACGGGTCGG
8122182 GT
1 GT
8122184 TAGGTTGACT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.24, C:0.20, G:0.37, T:0.20
Consensus pattern (20 bp):
GTCAACAGTCAACGGGTCGG
Found at i:8126749 original size:20 final size:19
Alignment explanation
Indices: 8126712--8126761 Score: 64
Period size: 20 Copynumber: 2.6 Consensus size: 19
8126702 TATTTATTAA
*
8126712 TTCATTGTCTTTGTTTATC
1 TTCATTATCTTTGTTTATC
* *
8126731 TTCTTTATCTTTCGTTTATT
1 TTCATTATCTTT-GTTTATC
8126751 TTCATTATCTT
1 TTCATTATCTT
8126762 AATCTTGTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 10 0.38
20 16 0.62
ACGTcount: A:0.12, C:0.16, G:0.06, T:0.66
Consensus pattern (19 bp):
TTCATTATCTTTGTTTATC
Found at i:8127193 original size:17 final size:17
Alignment explanation
Indices: 8127166--8127214 Score: 80
Period size: 17 Copynumber: 2.8 Consensus size: 17
8127156 ATTATTTTAA
8127166 TTTTCCTTTATTTTAGTT
1 TTTTCC-TTATTTTAGTT
*
8127184 TTTTTCTTATTTTAGTT
1 TTTTCCTTATTTTAGTT
8127201 TTTTCCTTATTTTA
1 TTTTCCTTATTTTA
8127215 TTTAGACTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
17 24 0.83
18 5 0.17
ACGTcount: A:0.12, C:0.10, G:0.04, T:0.73
Consensus pattern (17 bp):
TTTTCCTTATTTTAGTT
Found at i:8127253 original size:41 final size:42
Alignment explanation
Indices: 8127200--8127285 Score: 133
Period size: 41 Copynumber: 2.1 Consensus size: 42
8127190 TTATTTTAGT
8127200 TTTTTCCTTATTTTATTTAGACTCA-TTAAAAG-GATGTTTACC
1 TTTTTCCTTATTTTATTTAGACTCATTTAAAAGAG-T-TTTACC
8127242 TTTTT-CTTATTTTATTTAGACTCATTTAAAAGAGTTTTACC
1 TTTTTCCTTATTTTATTTAGACTCATTTAAAAGAGTTTTACC
8127283 TTT
1 TTT
8127286 CTTTTAAGGA
Statistics
Matches: 42, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
41 28 0.67
42 13 0.31
43 1 0.02
ACGTcount: A:0.26, C:0.13, G:0.08, T:0.53
Consensus pattern (42 bp):
TTTTTCCTTATTTTATTTAGACTCATTTAAAAGAGTTTTACC
Found at i:8141695 original size:32 final size:32
Alignment explanation
Indices: 8141621--8141732 Score: 91
Period size: 32 Copynumber: 3.5 Consensus size: 32
8141611 GTAACTGCTT
* * ** * * *
8141621 TGCATTATCTAAATACGACACTGGCTGTACTA
1 TGCATTATCTAAATGCGACATTCACTCTATTG
* *
8141653 TGCATCATCTAAATGCGACATTCACTCTGTTG
1 TGCATTATCTAAATGCGACATTCACTCTATTG
* * **
8141685 TG-AGTTATCTAAAAGAGACATTGGCTCTATTG
1 TGCA-TTATCTAAATGCGACATTCACTCTATTG
8141717 TGCATTATCTAAATGC
1 TGCATTATCTAAATGC
8141733 AACACTGCTA
Statistics
Matches: 61, Mismatches: 17, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
31 1 0.02
32 59 0.97
33 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (32 bp):
TGCATTATCTAAATGCGACATTCACTCTATTG
Found at i:8142448 original size:20 final size:21
Alignment explanation
Indices: 8142420--8142461 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
8142410 ATATAATATG
8142420 TATA-TTTTTGAAAATACATA
1 TATAGTTTTTGAAAATACATA
*
8142440 TATAGTTTTTGAAAATATATA
1 TATAGTTTTTGAAAATACATA
8142461 T
1 T
8142462 CATATATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (21 bp):
TATAGTTTTTGAAAATACATA
Found at i:8142450 original size:21 final size:20
Alignment explanation
Indices: 8142420--8142466 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 20
8142410 ATATAATATG
8142420 TATATTTTTGAAAATACATA
1 TATATTTTTGAAAATACATA
*
8142440 TATAGTTTTTGAAAATATATA
1 TATA-TTTTTGAAAATACATA
8142461 TCATAT
1 T-ATAT
8142467 ATTATATAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 4 0.17
21 17 0.71
22 3 0.12
ACGTcount: A:0.43, C:0.04, G:0.06, T:0.47
Consensus pattern (20 bp):
TATATTTTTGAAAATACATA
Found at i:8142520 original size:22 final size:22
Alignment explanation
Indices: 8142493--8142547 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
8142483 ATATACATAT
**
8142493 ATATATTATATAATTTTTGAAA
1 ATATATTATATAATTTTAAAAA
*
8142515 ATATATTATATAGTTTTAAAAA
1 ATATATTATATAATTTTAAAAA
*
8142537 ATATATAATAT
1 ATATATTATAT
8142548 TATAGTATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (22 bp):
ATATATTATATAATTTTAAAAA
Found at i:8149114 original size:2 final size:2
Alignment explanation
Indices: 8149107--8149158 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
8149097 TCATTACATG
8149107 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8149149 TA TA TA TA TA
1 TA TA TA TA TA
8149159 CAATTTTGCA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8149614 original size:43 final size:43
Alignment explanation
Indices: 8149540--8149622 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 43
8149530 GAAGAATCAT
* * *
8149540 TTCACTTGACTTAAACTCACGAATGGGAGTCATCTAAAAACAG
1 TTCACTTGACATAAACTCACGAATGGAAGTCATCCAAAAACAG
**
8149583 TTCACTTGACATAAACTCGTGAA-GCGAAGTCATCCAAAAA
1 TTCACTTGACATAAACTCACGAATG-GAAGTCATCCAAAAA
8149623 ATCGTTCACT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 1 0.03
43 33 0.97
ACGTcount: A:0.39, C:0.22, G:0.16, T:0.24
Consensus pattern (43 bp):
TTCACTTGACATAAACTCACGAATGGAAGTCATCCAAAAACAG
Found at i:8149730 original size:132 final size:132
Alignment explanation
Indices: 8149460--8149952 Score: 321
Period size: 132 Copynumber: 3.7 Consensus size: 132
8149450 ACAAGACTGG
* * *
8149460 CTTAAACCCGTGAAGAGAAGTCATCCAAAGAATCCTTCACCTGGCTTAGACCTGCAAAGTGGAAT
1 CTTAAACCCGTGAAGAGAAGTCATCCAAAAAATCCTTCACCTGGCTTAGACCTACAAAGGGGAAT
* *
8149525 CGTCTGAAGAATCATTTCACTTGACTTAAACTCACGAATGGGAGTCATCTAAAAACAGTTCACTT
66 CGTCTAAAGAATCATTTCACTTGACTTAAACTCACGAATGGGAGTCATCCAAAAACAGTTCACTT
8149590 GA
131 GA
* * * * * * * *
8149592 CATAAACTCGTGAAGCGAAGTCATCCAAAAAATCGTTCACTTGGTTTAGACCTACGAAGGGGAGT
1 CTTAAACCCGTGAAGAGAAGTCATCCAAAAAATCCTTCACCTGGCTTAGACCTACAAAGGGGAAT
* * * * ** *
8149657 TGTCTAAAGAATCATTTTACTTGGCTTGAAC-CTGTGAA-GTGGAGTCATCCAAAAATAGTTCAC
66 CGTCTAAAGAATCATTTCACTTGACTTAAACTC-ACGAATG-GGAGTCATCCAAAAACAGTTCAC
8149720 TT-A
129 TTGA
* * * * * * * * * * * **** *
8149723 TGTTAAACCCCT-AAAAGGAAGTCATCTAAAGAATACTTTATCTAGCTCAAACCCGTGAAGAGGA
1 -CTTAAACCCGTGAAGA-GAAGTCATCCAAAAAATCCTTCACCTGGCTTAGACCTACAAAGGGGA
* * * * ** * * * * * * *
8149787 GTTGTCTGAAGGATCATTTTGCTTGGCTTGAACCCGCGAAGGGGAGT-ATTTCAAAAAATAGTTC
64 ATCGTCTAAAGAATCATTTCACTTGACTTAAACTCACGAATGGGAGTCA--TCCAAAAACAGTTC
*
8149851 ACTTGG
127 ACTTGA
* * ** * * * * ** * *
8149857 CTTAAACCCGTTAAGGGTTGTCATCTAAAGAATCTTTCACCTGGCTTAAACCCGCGAAGGGGATT
1 CTTAAACCCGTGAAGAGAAGTCATCCAAAAAATCCTTCACCTGGCTTAGACCTACAAAGGGGAAT
* *
8149922 CATCTGAAGAATCATTTCACTTGACTTAAAC
66 CGTCTAAAGAATCATTTCACTTGACTTAAAC
8149953 CCATGATGGG
Statistics
Matches: 282, Mismatches: 69, Indels: 19
0.76 0.19 0.05
Matches are distributed among these distances:
131 6 0.02
132 184 0.65
133 90 0.32
134 2 0.01
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.27
Consensus pattern (132 bp):
CTTAAACCCGTGAAGAGAAGTCATCCAAAAAATCCTTCACCTGGCTTAGACCTACAAAGGGGAAT
CGTCTAAAGAATCATTTCACTTGACTTAAACTCACGAATGGGAGTCATCCAAAAACAGTTCACTT
GA
Found at i:8149865 original size:44 final size:44
Alignment explanation
Indices: 8149457--8149954 Score: 180
Period size: 44 Copynumber: 11.3 Consensus size: 44
8149447 TATACAAGAC
* * * * * ** *
8149457 TGGCTTAAACCCGTGAAGAGAAGTCATCCAAAGAATCCTTCACC
1 TGGCTTAAACCCGCGAAGGGGAGTCATCTAAAAAATAGTTCACT
* * * * * * * * *
8149501 TGGCTTAGACCTGCAAAGTGGAATCGTCTGAAGAATCATTTCACT
1 TGGCTTAAACCCGCGAAGGGGAGTCATCTAAAAAAT-AGTTCACT
* * * * *
8149546 TGACTTAAACTCACGAATGGGAGTCATCT-AAAAACAGTTCACT
1 TGGCTTAAACCCGCGAAGGGGAGTCATCTAAAAAATAGTTCACT
* * * * * * * *
8149589 TGACATAAACTCGTGAAGCGAAGTCATCCAAAAAATCGTTCACT
1 TGGCTTAAACCCGCGAAGGGGAGTCATCTAAAAAATAGTTCACT
* * ** ** * * *
8149633 TGGTTTAGACCTACGAAGGGGAGTTGTCTAAAGAATCATTTTACT
1 TGGCTTAAACCCGCGAAGGGGAGTCATCTAAAAAAT-AGTTCACT
* * * * *
8149678 TGGCTTGAACCTGTGAAGTGGAGTCATC-CAAAAATAGTTCACT
1 TGGCTTAAACCCGCGAAGGGGAGTCATCTAAAAAATAGTTCACT
* * * * * * *
8149721 TATG-TTAAACCC-CTAAAAGGAAGTCATCTAAAGAATACTTTA-T
1 T-GGCTTAAACCCGC-GAAGGGGAGTCATCTAAAAAATAGTTCACT
* * * * ** * ** * **
8149764 CTAGCTCAAACCCGTGAAGAGGAGTTGTCTGAAGGATCATTTTGCT
1 -TGGCTTAAACCCGCGAAGGGGAGTCATCTAAAAAAT-AGTTCACT
* *
8149810 TGGCTTGAACCCGCGAAGGGGAGT-ATTTCAAAAAATAGTTCACT
1 TGGCTTAAACCCGCGAAGGGGAGTCATCT-AAAAAATAGTTCACT
** ** * ** *
8149854 TGGCTTAAACCCGTTAAGGGTTGTCATCTAAAGAATCTTTCACC
1 TGGCTTAAACCCGCGAAGGGGAGTCATCTAAAAAATAGTTCACT
* * * *
8149898 TGGCTTAAACCCGCGAAGGGGATTCATCTGAAGAATCATTTCACT
1 TGGCTTAAACCCGCGAAGGGGAGTCATCTAAAAAAT-AGTTCACT
*
8149943 TGACTTAAACCC
1 TGGCTTAAACCC
8149955 ATGATGGGAA
Statistics
Matches: 319, Mismatches: 121, Indels: 27
0.68 0.26 0.06
Matches are distributed among these distances:
43 54 0.17
44 168 0.53
45 96 0.30
46 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.27
Consensus pattern (44 bp):
TGGCTTAAACCCGCGAAGGGGAGTCATCTAAAAAATAGTTCACT
Found at i:8150923 original size:27 final size:27
Alignment explanation
Indices: 8150857--8150922 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 27
8150847 TAAGGTGAGA
*
8150857 TAAAA-AATAAAATATCATAATTACTT
1 TAAAACAATAAAATATCATAAATACTT
* *
8150883 TAAGACATTAAAATATCATAAATACTT
1 TAAAACAATAAAATATCATAAATACTT
8150910 TAAAAACAATAAA
1 T-AAAACAATAAA
8150923 TGTAAGTAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
26 4 0.12
27 20 0.61
28 9 0.27
ACGTcount: A:0.59, C:0.09, G:0.02, T:0.30
Consensus pattern (27 bp):
TAAAACAATAAAATATCATAAATACTT
Found at i:8159957 original size:21 final size:21
Alignment explanation
Indices: 8159908--8160011 Score: 79
Period size: 21 Copynumber: 4.9 Consensus size: 21
8159898 ATTTTTGTGC
*
8159908 ATAGTGTATCGATACACCCTCG
1 ATAGTGTATCGATACACTCT-G
* *
8159930 CTA-TGTATCGATACACTATG
1 ATAGTGTATCGATACACTCTG
* * *
8159950 ATAGTGTACCGATGCATTCCTTG
1 ATAGTGTATCGATACACT-C-TG
8159973 A-ATGTGTATCGATACACTCTG
1 ATA-GTGTATCGATACACTCTG
* *
8159994 -TAGTGTACCAATACACTC
1 ATAGTGTATCGATACACTC
8160012 GTCGGGTTTT
Statistics
Matches: 64, Mismatches: 13, Indels: 12
0.72 0.15 0.13
Matches are distributed among these distances:
20 17 0.27
21 28 0.44
22 4 0.06
23 15 0.23
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (21 bp):
ATAGTGTATCGATACACTCTG
Found at i:8160432 original size:14 final size:13
Alignment explanation
Indices: 8160406--8160431 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8160396 TTCGAAATAA
8160406 AAAATTTGATTTT
1 AAAATTTGATTTT
8160419 AAAATTTGATTTT
1 AAAATTTGATTTT
8160432 TTTGATTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (13 bp):
AAAATTTGATTTT
Found at i:8164145 original size:23 final size:22
Alignment explanation
Indices: 8164112--8164166 Score: 74
Period size: 23 Copynumber: 2.4 Consensus size: 22
8164102 ATCGATTCCC
8164112 TCAAGGAGGGAATCAGTTCCCAT
1 TCAAGG-GGGAATCAGTTCCCAT
* *
8164135 TCAAAGGGGGAATCGGTTCCCCT
1 TC-AAGGGGGAATCAGTTCCCAT
8164158 TCAAGGGGG
1 TCAAGGGGG
8164167 TATCGATTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 7 0.24
23 18 0.62
24 4 0.14
ACGTcount: A:0.25, C:0.22, G:0.33, T:0.20
Consensus pattern (22 bp):
TCAAGGGGGAATCAGTTCCCAT
Found at i:8164166 original size:22 final size:22
Alignment explanation
Indices: 8164096--8164177 Score: 80
Period size: 22 Copynumber: 3.7 Consensus size: 22
8164086 AAAACCCATG
*
8164096 GGGGGTATCGATT-CCC-TCAA
1 GGGGGAATCGATTCCCCTTCAA
*
8164116 GGAGGGAATC-AGTTCCCATTCAAA
1 GG-GGGAATCGA-TTCCCCTTC-AA
*
8164140 GGGGGAATCGGTTCCCCTTCAA
1 GGGGGAATCGATTCCCCTTCAA
*
8164162 GGGGGTATCGATTCCC
1 GGGGGAATCGATTCCC
8164178 TCTGCACTAA
Statistics
Matches: 50, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
20 3 0.06
21 8 0.16
22 18 0.36
23 17 0.34
24 4 0.08
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (22 bp):
GGGGGAATCGATTCCCCTTCAA
Found at i:8175081 original size:15 final size:16
Alignment explanation
Indices: 8175053--8175082 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8175043 AATCACCATT
8175053 TTCCATTGAAAATATC
1 TTCCATTGAAAATATC
8175069 TTCCATT-AAAATAT
1 TTCCATTGAAAATAT
8175083 TCCATAGTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.40, C:0.17, G:0.03, T:0.40
Consensus pattern (16 bp):
TTCCATTGAAAATATC
Found at i:8181412 original size:21 final size:21
Alignment explanation
Indices: 8181388--8181456 Score: 84
Period size: 21 Copynumber: 3.2 Consensus size: 21
8181378 GAATCGATAC
*
8181388 CCCCTTGAAGGGGAACTGATT
1 CCCCTTGAAGGGGAACCGATT
*
8181409 CCCCCTTTGAATGGGAACCGATT
1 -CCCC-TTGAAGGGGAACCGATT
* *
8181432 CCCCCTGTAGGGGAACCGATT
1 CCCCTTGAAGGGGAACCGATT
8181453 CCCC
1 CCCC
8181457 CCTATAGAGG
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
21 18 0.44
22 8 0.20
23 15 0.37
ACGTcount: A:0.20, C:0.33, G:0.25, T:0.22
Consensus pattern (21 bp):
CCCCTTGAAGGGGAACCGATT
Found at i:8181457 original size:21 final size:22
Alignment explanation
Indices: 8181376--8181457 Score: 103
Period size: 23 Copynumber: 3.7 Consensus size: 22
8181366 TTAGTGCAGA
* *
8181376 GGGAATCGATACCCCCTTGAAG
1 GGGAACCGATTCCCCCTTGAAG
* *
8181398 GGGAACTGATTCCCCCTTTGAAT
1 GGGAACCGATTCCCCC-TTGAAG
*
8181421 GGGAACCGATTCCCCC-TGTAG
1 GGGAACCGATTCCCCCTTGAAG
8181442 GGGAACCGATTCCCCC
1 GGGAACCGATTCCCCC
8181458 CTATAGAGGA
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
21 19 0.37
22 13 0.25
23 20 0.38
ACGTcount: A:0.22, C:0.32, G:0.26, T:0.21
Consensus pattern (22 bp):
GGGAACCGATTCCCCCTTGAAG
Found at i:8181458 original size:23 final size:22
Alignment explanation
Indices: 8181376--8181482 Score: 92
Period size: 22 Copynumber: 4.9 Consensus size: 22
8181366 TTAGTGCAGA
* * *
8181376 GGGAATCGATACCCCCTTGAAG
1 GGGAACCGATTCCCCCCTGAAG
* * *
8181398 GGGAACTGATTCCCCCTTTGAAT
1 GGGAACCGATTCCCCC-CTGAAG
*
8181421 GGGAACCGATT-CCCCCTGTAG
1 GGGAACCGATTCCCCCCTGAAG
8181442 GGGAACCGATTCCCCCCT-ATAG
1 GGGAACCGATTCCCCCCTGA-AG
* * *
8181464 AGGAATCGATACCCCCCTG
1 GGGAACCGATTCCCCCCTG
8181483 GGGTTCTAGT
Statistics
Matches: 69, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
21 14 0.20
22 40 0.58
23 15 0.22
ACGTcount: A:0.23, C:0.32, G:0.24, T:0.21
Consensus pattern (22 bp):
GGGAACCGATTCCCCCCTGAAG
Found at i:8181480 original size:44 final size:44
Alignment explanation
Indices: 8181375--8181482 Score: 114
Period size: 44 Copynumber: 2.5 Consensus size: 44
8181365 TTTAGTGCAG
* * *
8181375 AGGGAATCGATACCCCCTTGAAGGGGAACTGATTCCCCCTTTGA
1 AGGGAATCGATACCCCCCTGAAGGGGAACCGATTCCCCCTTAGA
* * *
8181419 ATGGGAACCGAT-TCCCCCTGTAGGGGAACCGATTCCCCCCTATAG-
1 A-GGGAATCGATACCCCCCTGAAGGGGAACCGATT-CCCCCT-TAGA
8181464 A-GGAATCGATACCCCCCTG
1 AGGGAATCGATACCCCCCTG
8181483 GGGTTCTAGT
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
43 8 0.15
44 26 0.50
45 16 0.31
46 2 0.04
ACGTcount: A:0.24, C:0.31, G:0.24, T:0.20
Consensus pattern (44 bp):
AGGGAATCGATACCCCCCTGAAGGGGAACCGATTCCCCCTTAGA
Found at i:8183078 original size:18 final size:17
Alignment explanation
Indices: 8183050--8183097 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 17
8183040 ATGAACTAGA
8183050 ACAGCACGAGGAACAAGC
1 ACAGCA-GAGGAACAAGC
*
8183068 ACGAGCAGAGGAACAATC
1 AC-AGCAGAGGAACAAGC
8183086 ACAGGCAGAGGA
1 ACA-GCAGAGGA
8183098 TCAAATGCCT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
17 1 0.04
18 22 0.81
19 4 0.15
ACGTcount: A:0.44, C:0.23, G:0.31, T:0.02
Consensus pattern (17 bp):
ACAGCAGAGGAACAAGC
Found at i:8184121 original size:21 final size:22
Alignment explanation
Indices: 8184089--8184142 Score: 108
Period size: 22 Copynumber: 2.5 Consensus size: 22
8184079 TAGAGGGAAT
8184089 CGATTCCCCCCCAAGGGGGTAC
1 CGATTCCCCCCCAAGGGGGTAC
8184111 CGATTCCCCCCCAAGGGGGTAC
1 CGATTCCCCCCCAAGGGGGTAC
8184133 CGATTCCCCC
1 CGATTCCCCC
8184143 TGAATGGTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.17, C:0.44, G:0.24, T:0.15
Consensus pattern (22 bp):
CGATTCCCCCCCAAGGGGGTAC
Found at i:8185087 original size:29 final size:29
Alignment explanation
Indices: 8185005--8185094 Score: 85
Period size: 29 Copynumber: 3.1 Consensus size: 29
8184995 CCAAAAAATA
* * *
8185005 TAAA-TTTCAAAAGTTACATTTTTGTCCC
1 TAAACTTTCAAAACTTACATTTTAGTCAC
* * * *
8185033 TAAACTTTTCCAAATTTATACTTTAG-CAAC
1 TAAAC-TTTCAAAACTTACATTTTAGTC-AC
8185063 TAAACTTTCAAAACTTACATTTTAGTCAC
1 TAAACTTTCAAAACTTACATTTTAGTCAC
8185092 TAA
1 TAA
8185095 CCAAAATTTG
Statistics
Matches: 48, Mismatches: 10, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
28 4 0.08
29 22 0.46
30 22 0.46
ACGTcount: A:0.37, C:0.19, G:0.04, T:0.40
Consensus pattern (29 bp):
TAAACTTTCAAAACTTACATTTTAGTCAC
Found at i:8186715 original size:17 final size:16
Alignment explanation
Indices: 8186683--8186713 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8186673 AGGGTTTTAT
8186683 TTTATTTTAAATTTTC
1 TTTATTTTAAATTTTC
*
8186699 TTTATTTTAACTTTT
1 TTTATTTTAAATTTT
8186714 TCCTTATTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTATTTTAAATTTTC
Found at i:8186720 original size:17 final size:16
Alignment explanation
Indices: 8186684--8186722 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
8186674 GGGTTTTATT
*
8186684 TTATTTTAAATTTTCT
1 TTATTTTAAATTTTCC
*
8186700 TTATTTTAACTTTTTCC
1 TTATTTTAA-ATTTTCC
8186717 TTATTT
1 TTATTT
8186723 GATTTAGACT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 9 0.45
17 11 0.55
ACGTcount: A:0.21, C:0.10, G:0.00, T:0.69
Consensus pattern (16 bp):
TTATTTTAAATTTTCC
Found at i:8190719 original size:36 final size:36
Alignment explanation
Indices: 8190641--8190855 Score: 254
Period size: 36 Copynumber: 6.0 Consensus size: 36
8190631 TTCAAATATA
** *
8190641 ATTTTTGAAAATATATAATATATAGTTTTTTGAAACTT
1 ATTTTTGAAAACGTATAATATATAG-TTTTTAAAAC-T
* *
8190679 ATTTTTAAAAACGTATAATATATAGTTTTTAAAACG
1 ATTTTTGAAAACGTATAATATATAGTTTTTAAAACT
* *
8190715 A-TTTTGAAAACATATAGTATATAGTTTTTAAAA-T
1 ATTTTTGAAAACGTATAATATATAGTTTTTAAAACT
* *
8190749 AATTTTGAAAACGTATAATATATAGTTTTTAAAAAT
1 ATTTTTGAAAACGTATAATATATAGTTTTTAAAACT
* *
8190785 AGTTTTGAAAACGTATAATATATAGTTTTTAAAAAT
1 ATTTTTGAAAACGTATAATATATAGTTTTTAAAACT
** * * *
8190821 GGTTTTGAAAACATATAGTATATAGGTTTTAAAAC
1 ATTTTTGAAAACGTATAATATATAGTTTTTAAAAC
8190856 GGTTTTGAAA
Statistics
Matches: 158, Mismatches: 17, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
34 1 0.01
35 59 0.37
36 67 0.42
37 9 0.06
38 22 0.14
ACGTcount: A:0.43, C:0.04, G:0.10, T:0.43
Consensus pattern (36 bp):
ATTTTTGAAAACGTATAATATATAGTTTTTAAAACT
Found at i:8190736 original size:35 final size:35
Alignment explanation
Indices: 8190643--8190868 Score: 254
Period size: 35 Copynumber: 6.3 Consensus size: 35
8190633 CAAATATAAT
* * *
8190643 TTTTGAAAATATATAATATATAGTTTTTTGAAACTTA
1 TTTTGAAAACATATAATATATAG-TTTTTAAAAC-GA
* *
8190680 TTTTTAAAAACGTATAATATATAGTTTTTAAAACGA
1 -TTTTGAAAACATATAATATATAGTTTTTAAAACGA
* **
8190716 TTTTGAAAACATATAGTATATAGTTTTTAAAATAA
1 TTTTGAAAACATATAATATATAGTTTTTAAAACGA
* **
8190751 TTTTGAAAACGTATAATATATAGTTTTTAAAAATA
1 TTTTGAAAACATATAATATATAGTTTTTAAAACGA
* * *
8190786 GTTTTGAAAACGTATAATATATAGTTTTTAAAAATGG
1 -TTTTGAAAACATATAATATATAGTTTTT-AAAACGA
* * *
8190823 TTTTGAAAACATATAGTATATAGGTTTTAAAACGG
1 TTTTGAAAACATATAATATATAGTTTTTAAAACGA
8190858 TTTTGAAAACA
1 TTTTGAAAACA
8190869 CATAGTTTTG
Statistics
Matches: 165, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
35 78 0.47
36 54 0.33
37 13 0.08
38 20 0.12
ACGTcount: A:0.43, C:0.04, G:0.11, T:0.42
Consensus pattern (35 bp):
TTTTGAAAACATATAATATATAGTTTTTAAAACGA
Found at i:8190811 original size:71 final size:72
Alignment explanation
Indices: 8190643--8190868 Score: 271
Period size: 71 Copynumber: 3.2 Consensus size: 72
8190633 CAAATATAAT
* ** * *
8190643 TTTTGAAAATATATAATATATAGTTTTTTGAAACTTATTTTTAAAAACGTATAATATATAGTTTT
1 TTTTGAAAACATATAATATATAG-TTTTT-AAAAATAATTTTGAAAACGTATAATATATAGTTTT
8190708 T-AAAAC-G
64 TAAAAACAG
*
8190715 ATTTTGAAAACATATAGTATATAGTTTTT-AAAATAATTTTGAAAACGTATAATATATAGTTTTT
1 -TTTTGAAAACATATAATATATAGTTTTTAAAAATAATTTTGAAAACGTATAATATATAGTTTTT
*
8190779 AAAAATAG
65 AAAAACAG
* ** * * *
8190787 TTTTGAAAACGTATAATATATAGTTTTTAAAAATGGTTTTGAAAACATATAGTATATAGGTTTT-
1 TTTTGAAAACATATAATATATAGTTTTTAAAAATAATTTTGAAAACGTATAATATATAGTTTTTA
*
8190851 AAAACGG
66 AAAACAG
8190858 TTTTGAAAACA
1 TTTTGAAAACA
8190869 CATAGTTTTG
Statistics
Matches: 133, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
70 31 0.23
71 45 0.34
72 36 0.27
73 21 0.16
ACGTcount: A:0.43, C:0.04, G:0.11, T:0.42
Consensus pattern (72 bp):
TTTTGAAAACATATAATATATAGTTTTTAAAAATAATTTTGAAAACGTATAATATATAGTTTTTA
AAAACAG
Found at i:8190891 original size:87 final size:87
Alignment explanation
Indices: 8190783--8190955 Score: 278
Period size: 87 Copynumber: 2.0 Consensus size: 87
8190773 GTTTTTAAAA
*
8190783 ATAGTTTTGAAAACGTATAATATATAGTTTT-TAAAAATGGTTTTGAAAACATATAGT-ATATAG
1 ATAGTTTTGAAAACGTATAATATATAGTTTTAAAAAAATGGTTTTGAAAACATATA-TAATATA-
*
8190846 GTTTTAAAACGGTTTTGAAAACAC
64 GTTTTAAAACGATTTTGAAAACAC
8190870 ATAGTTTTGAAAACGTATAATATATAGTTTTAAAAAAATGGTTTTGAAAACATATATAATATAGT
1 ATAGTTTTGAAAACGTATAATATATAGTTTTAAAAAAATGGTTTTGAAAACATATATAATATAGT
* *
8190935 TTTGAAATGATTTTGAAAACA
66 TTTAAAACGATTTTGAAAACA
8190956 TATAATATAT
Statistics
Matches: 80, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
87 52 0.65
88 28 0.35
ACGTcount: A:0.43, C:0.05, G:0.14, T:0.38
Consensus pattern (87 bp):
ATAGTTTTGAAAACGTATAATATATAGTTTTAAAAAAATGGTTTTGAAAACATATATAATATAGT
TTTAAAACGATTTTGAAAACAC
Found at i:8190943 original size:34 final size:34
Alignment explanation
Indices: 8190873--8191007 Score: 164
Period size: 34 Copynumber: 3.9 Consensus size: 34
8190863 AAAACACATA
*
8190873 GTTTTGAAAACGTATAATATATAGTTTTAAAAAAATG
1 GTTTTGAAAACATATAATATATAGTTTT---AAAATG
*
8190910 GTTTTGAAAACATAT-ATAATATAGTTTTGAAATG
1 GTTTTGAAAACATATAAT-ATATAGTTTTAAAATG
* ** *
8190944 ATTTTGAAAACATATAATATATAGTTTTTTAATA
1 GTTTTGAAAACATATAATATATAGTTTTAAAATG
*
8190978 GTTTTGAAAACATATAATATATATTTTTAA
1 GTTTTGAAAACATATAATATATAGTTTTAA
8191008 CCAATTTTGA
Statistics
Matches: 86, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
34 58 0.67
35 2 0.02
36 2 0.02
37 24 0.28
ACGTcount: A:0.44, C:0.03, G:0.10, T:0.43
Consensus pattern (34 bp):
GTTTTGAAAACATATAATATATAGTTTTAAAATG
Found at i:8191029 original size:34 final size:33
Alignment explanation
Indices: 8190874--8191041 Score: 144
Period size: 34 Copynumber: 4.9 Consensus size: 33
8190864 AAACACATAG
* * *
8190874 TTTTGAAAACGTATAATATATAGTTTTAAAAAAA
1 TTTTGAAAACATATAATATATAGTTTT-TAACAA
*
8190908 TGGTTTTGAAAACATAT-ATAATATAGTTTTGAA-ATGA
1 ---TTTTGAAAACATATAAT-ATATAGTTTTTAACA--A
* *
8190945 TTTTGAAAACATATAATATATAGTTTTTTAATAG
1 TTTTGAAAACATATAATATATAG-TTTTTAACAA
8190979 TTTTGAAAACATATAATATATA-TTTTTAACCAA
1 TTTTGAAAACATATAATATATAGTTTTTAA-CAA
** *
8191012 TTTTGAAAATGTAATAATATATAGCTTTTA
1 TTTTGAAAACAT-ATAATATATAGTTTTTA
8191042 TTTATTATTT
Statistics
Matches: 113, Mismatches: 9, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
32 7 0.06
33 11 0.10
34 52 0.46
35 14 0.12
36 5 0.04
37 24 0.21
ACGTcount: A:0.43, C:0.04, G:0.10, T:0.43
Consensus pattern (33 bp):
TTTTGAAAACATATAATATATAGTTTTTAACAA
Found at i:8191029 original size:68 final size:68
Alignment explanation
Indices: 8190874--8191041 Score: 187
Period size: 68 Copynumber: 2.4 Consensus size: 68
8190864 AAACACATAG
* *
8190874 TTTTGAAAACGTATAATATATAGTTTTAAAAAAATGGTTTTGAAAACATATATAATATAGTTTTG
1 TTTTGAAAACGTATAATATATAGTTTT---TAAATAGTTTTGAAAACATATATAATATAGTTTTG
**
8190939 AAATGA
63 AAACAA
* * *
8190945 TTTTGAAAACATATAATATATAGTTTTTTAATAGTTTTGAAAACATATA-ATATATA-TTTTTAA
1 TTTTGAAAACGTATAATATATAGTTTTTAAATAGTTTTGAAAACATATATA-ATATAGTTTTGAA
*
8191008 CCAA
65 ACAA
* *
8191012 TTTTGAAAATGTAATAATATATAGCTTTTA
1 TTTTGAAAACGT-ATAATATATAGTTTTTA
8191042 TTTATTATTT
Statistics
Matches: 83, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
67 18 0.22
68 39 0.47
71 26 0.31
ACGTcount: A:0.43, C:0.04, G:0.10, T:0.43
Consensus pattern (68 bp):
TTTTGAAAACGTATAATATATAGTTTTTAAATAGTTTTGAAAACATATATAATATAGTTTTGAAA
CAA
Found at i:8191047 original size:4 final size:4
Alignment explanation
Indices: 8191038--8191101 Score: 66
Period size: 4 Copynumber: 16.8 Consensus size: 4
8191028 ATATATAGCT
*
8191038 TTTA TTTA -TTA TTTA TTTA -TTA TTTA TCTA TTATA TTTA TTTA TTT-
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT-TA TTTA TTTA TTTA
8191084 TGTT- TTTA TTT- TTTA TTT
1 T-TTA TTTA TTTA TTTA TTT
8191102 CGATCCAAGT
Statistics
Matches: 52, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
3 12 0.23
4 36 0.69
5 4 0.08
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:8191054 original size:11 final size:11
Alignment explanation
Indices: 8191038--8191101 Score: 67
Period size: 11 Copynumber: 5.6 Consensus size: 11
8191028 ATATATAGCT
8191038 TTTATTTATTA
1 TTTATTTATTA
8191049 TTTATTTATTA
1 TTTATTTATTA
*
8191060 TTTATCTATTATA
1 TTTATTTA-T-TA
8191073 TTTATTTATT-
1 TTTATTTATTA
* *
8191083 TTGTTTTTATTT
1 TT-TATTTATTA
8191095 TTTATTT
1 TTTATTT
8191102 CGATCCAAGT
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
10 2 0.04
11 30 0.67
12 4 0.09
13 9 0.20
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.75
Consensus pattern (11 bp):
TTTATTTATTA
Found at i:8192398 original size:18 final size:17
Alignment explanation
Indices: 8192375--8192414 Score: 62
Period size: 18 Copynumber: 2.3 Consensus size: 17
8192365 TTATTTTCTA
8192375 TTTTCTATTTTTTCATTT
1 TTTTCTATTTTTT-ATTT
8192393 TTTTCTATTTTTTATTT
1 TTTTCTATTTTTTATTT
*
8192410 CTTTC
1 TTTTC
8192415 AAAATTTAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.10, C:0.12, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTTCTATTTTTTATTT
Found at i:8192507 original size:16 final size:18
Alignment explanation
Indices: 8192478--8192518 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
8192468 CTTAATTTTA
8192478 TTTCTTTTTATTTCTT-T
1 TTTCTTTTTATTTCTTAT
8192495 TTTCTTTTT-TTTCTTAT
1 TTTCTTTTTATTTCTTAT
8192512 TTT-TTTT
1 TTTCTTTT
8192519 AAATTTAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 10 0.43
17 13 0.57
ACGTcount: A:0.05, C:0.10, G:0.00, T:0.85
Consensus pattern (18 bp):
TTTCTTTTTATTTCTTAT
Found at i:8192575 original size:19 final size:19
Alignment explanation
Indices: 8192543--8192580 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
8192533 TTTTCTTCTC
8192543 TTTGATTTACTTAATATTTA
1 TTTGATTTACTTAAT-TTTA
*
8192563 TTTG-TTTATTTAATTTTA
1 TTTGATTTACTTAATTTTA
8192581 CAATCTAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 9 0.53
20 4 0.24
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.66
Consensus pattern (19 bp):
TTTGATTTACTTAATTTTA
Found at i:8193612 original size:3 final size:3
Alignment explanation
Indices: 8193606--8193667 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
8193596 AATTTTTTTC
8193606 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
8193654 ATT ATT ATT ATT AT
1 ATT ATT ATT ATT AT
8193668 CTTACTAACT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:8199975 original size:16 final size:16
Alignment explanation
Indices: 8199954--8199997 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
8199944 AATTCTTAGT
*
8199954 ATACAACTAGATTAAA
1 ATACAACCAGATTAAA
8199970 ATACAACCAGATTAAA
1 ATACAACCAGATTAAA
* *
8199986 ATGCATCCAGAT
1 ATACAACCAGAT
8199998 GACATGGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.50, C:0.18, G:0.09, T:0.23
Consensus pattern (16 bp):
ATACAACCAGATTAAA
Found at i:8201541 original size:20 final size:20
Alignment explanation
Indices: 8201516--8201555 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
8201506 AATATTCTGT
8201516 AATACATTAAGAACCAAAGC
1 AATACATTAAGAACCAAAGC
*
8201536 AATACATTAAGAATCAAAGC
1 AATACATTAAGAACCAAAGC
8201556 TATCCAGAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.55, C:0.17, G:0.10, T:0.17
Consensus pattern (20 bp):
AATACATTAAGAACCAAAGC
Found at i:8204575 original size:35 final size:35
Alignment explanation
Indices: 8204478--8204889 Score: 364
Period size: 35 Copynumber: 11.6 Consensus size: 35
8204468 CAAATATAGT
* * * *
8204478 TTTTGAAAATATATAATATATAATTTTTGGAAACTTAT
1 TTTTGAAAACATATAATATATAGTTTTT-AAAAC--AG
* **
8204516 TTTTAAAAAGGTATAATATATAGTTTTTAAAACAG
1 TTTTGAAAACATATAATATATAGTTTTTAAAACAG
* * *
8204551 TTTTGAAAACATATAGTATATAGTTTTTAAAATAA
1 TTTTGAAAACATATAATATATAGTTTTTAAAACAG
* * *
8204586 TTTTAAAAACGTATAATATATAGTTTTTAAAAAATAG
1 TTTTGAAAACATATAATATATAGTTTTT--AAAACAG
* *
8204623 TTTTGAAAACGTATAATATATAGTTTTTAAAAACGG
1 TTTTGAAAACATATAATATATAGTTTTT-AAAACAG
* * * *
8204659 CTTTAAAAACATATAGTATATAGTTTTTAAAACGG
1 TTTTGAAAACATATAATATATAGTTTTTAAAACAG
* * *
8204694 TTTTGAAAACATATAGTATATAGCTTTTAAAACGG
1 TTTTGAAAACATATAATATATAGTTTTTAAAACAG
* *
8204729 TTTTGAAAACATATAGTATATAGTTTTTAAAATAG
1 TTTTGAAAACATATAATATATAGTTTTTAAAACAG
* * * *
8204764 TTTTGAAAACGTATAATATATA-ATTTAAAAAAAGGG
1 TTTTGAAAACATATAATATATAGTTTTTAAAACA--G
* * * **
8204800 GTTTGATAACATAT-ATAATATAG-TTTTGAAATGG
1 TTTTGAAAACATATAAT-ATATAGTTTTTAAAACAG
* ** *
8204834 TTTTGAAAATATATAATATATAGTTTTT-TTATAG
1 TTTTGAAAACATATAATATATAGTTTTTAAAACAG
* *
8204868 TTTTGAAAACGTAGAATATATA
1 TTTTGAAAACATATAATATATA
8204890 TATATATATT
Statistics
Matches: 316, Mismatches: 50, Indels: 20
0.82 0.13 0.05
Matches are distributed among these distances:
34 48 0.15
35 154 0.49
36 53 0.17
37 37 0.12
38 24 0.08
ACGTcount: A:0.43, C:0.04, G:0.12, T:0.41
Consensus pattern (35 bp):
TTTTGAAAACATATAATATATAGTTTTTAAAACAG
Found at i:8204716 original size:143 final size:140
Alignment explanation
Indices: 8204517--8204889 Score: 471
Period size: 143 Copynumber: 2.6 Consensus size: 140
8204507 GAAACTTATT
** *
8204517 TTTAAAAAGGTATAATATATAGTTTTTAAAACAGTTTTGAAAACATATAGTATATAGTTTTTAAA
1 TTTAAAAACATAT-ATATATAGTTTTTAAAACGGTTTTGAAAACATATAGTATATAGTTTTTAAA
* * *
8204582 ATAATTTTAAAAACGTATAATATATAGTTTTTAAAAAATAGTTTTGAAAACGTATAATATATAGT
65 ATAGTTTTGAAAACGTATAATATATAGTTTTT--AAAATAGTTTTGAAAACGTATAATATATAAT
**
8204647 TTTTAAAAACGGC
128 TTAAAAAAACGGC
*
8204660 TTTAAAAACATATAGTATATAGTTTTTAAAACGGTTTTGAAAACATATAGTATATAGCTTTTAAA
1 TTTAAAAACATATA-TATATAGTTTTTAAAACGGTTTTGAAAACATATAGTATATAGTTTTTAAA
** * *
8204725 ACGGTTTTGAAAACATATAGTATATAGTTTTTAAAATAGTTTTGAAAACGTATAATATATAATTT
65 ATAGTTTTGAAAACGTATAATATATAGTTTTTAAAATAGTTTTGAAAACGTATAATATATAATTT
* *
8204790 AAAAAAAGGGG
130 AAAAAAACGGC
* * * * * * **
8204801 TTTGATAACATATATAATATAG-TTTTGAAATGGTTTTGAAAATATATAATATATAGTTTTT-TT
1 TTTAAAAACATATAT-ATATAGTTTTTAAAACGGTTTTGAAAACATATAGTATATAGTTTTTAAA
*
8204864 ATAGTTTTGAAAACGTAGAATATATA
65 ATAGTTTTGAAAACGTATAATATATA
8204890 TATATATATT
Statistics
Matches: 199, Mismatches: 29, Indels: 8
0.84 0.12 0.03
Matches are distributed among these distances:
139 21 0.11
140 35 0.18
141 57 0.29
142 1 0.01
143 85 0.43
ACGTcount: A:0.44, C:0.04, G:0.12, T:0.40
Consensus pattern (140 bp):
TTTAAAAACATATATATATAGTTTTTAAAACGGTTTTGAAAACATATAGTATATAGTTTTTAAAA
TAGTTTTGAAAACGTATAATATATAGTTTTTAAAATAGTTTTGAAAACGTATAATATATAATTTA
AAAAAACGGC
Done.