Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008747.1 Hibiscus syriacus cultivar Beakdansim tig00111837_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12616935
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 36 of 51
Found at i:9077383 original size:17 final size:17
Alignment explanation
Indices: 9077361--9077399 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
9077351 ATAAATATTC
* *
9077361 GACTCGAGCTTTAGCTT
1 GACTCGAGATTGAGCTT
*
9077378 GACTCGAGATTGAGTTT
1 GACTCGAGATTGAGCTT
9077395 GACTC
1 GACTC
9077400 AAGTTCTTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.33
Consensus pattern (17 bp):
GACTCGAGATTGAGCTT
Found at i:9078347 original size:14 final size:15
Alignment explanation
Indices: 9078315--9078416 Score: 56
Period size: 15 Copynumber: 6.8 Consensus size: 15
9078305 ATTTTAAGTG
9078315 TTTTTAATATTTAAT
1 TTTTTAATATTTAAT
9078330 TTTTTGAATA-TTAA-
1 TTTTT-AATATTTAAT
*
9078344 TTTTAAATATATT--T
1 TTTTTAATAT-TTAAT
* *
9078358 TTTTTATTTTTTAAAT
1 TTTTTAATATTT-AAT
9078374 TATTTTAATATTTTAA-
1 T-TTTTAATA-TTTAAT
*
9078390 ATTTTAATCATTT-AT
1 TTTTTAAT-ATTTAAT
9078405 TTATTT-ATATTT
1 TT-TTTAATATTT
9078417 TTCCTACATA
Statistics
Matches: 67, Mismatches: 8, Indels: 25
0.67 0.08 0.25
Matches are distributed among these distances:
13 6 0.09
14 16 0.24
15 24 0.36
16 10 0.15
17 8 0.12
18 3 0.04
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.66
Consensus pattern (15 bp):
TTTTTAATATTTAAT
Found at i:9086897 original size:22 final size:23
Alignment explanation
Indices: 9086815--9086898 Score: 68
Period size: 22 Copynumber: 3.8 Consensus size: 23
9086805 AGGGAAAAAC
9086815 AAAATAATA-AAAAT-AAAAAATG
1 AAAA-AATAGAAAATAAAAAAATG
** *
9086837 CTAAAAGAGAAAATAAAAAAAT-
1 AAAAAATAGAAAATAAAAAAATG
* *
9086859 AAAAAAAATAAAATAAAAAAATG
1 AAAAAATAGAAAATAAAAAAATG
**
9086882 GGAAAATA-AAAATAAAA
1 AAAAAATAGAAAATAAAA
9086899 CGAAAAGTGT
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
21 3 0.06
22 34 0.69
23 12 0.24
ACGTcount: A:0.77, C:0.01, G:0.07, T:0.14
Consensus pattern (23 bp):
AAAAAATAGAAAATAAAAAAATG
Found at i:9089020 original size:21 final size:21
Alignment explanation
Indices: 9088994--9089037 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
9088984 TTGATAAAAA
* *
9088994 TTATTTAATATATTATTATTT
1 TTATTTAAAATATTAATATTT
9089015 TTATTTAAAATATTAATATTT
1 TTATTTAAAATATTAATATTT
9089036 TT
1 TT
9089038 TTAATAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (21 bp):
TTATTTAAAATATTAATATTT
Found at i:9089046 original size:21 final size:21
Alignment explanation
Indices: 9088994--9089048 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
9088984 TTGATAAAAA
* * *
9088994 TTATTTAATATATTATTATTT
1 TTATTAAAAATATTAATATTT
*
9089015 TTATTTAAAATATTAATATTT
1 TTATTAAAAATATTAATATTT
9089036 TT-TTAATAAATAT
1 TTATTAA-AAATAT
9089049 GGTAAAGTGT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
20 3 0.10
21 27 0.90
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
TTATTAAAAATATTAATATTT
Found at i:9089632 original size:85 final size:86
Alignment explanation
Indices: 9089523--9089782 Score: 371
Period size: 85 Copynumber: 3.0 Consensus size: 86
9089513 ATATCATTTA
* *
9089523 ATTGGAAATATTATCAAGCACAATAACCTATTAAGTACCGCTTATATAATGTAATAGGTAGCGCT
1 ATTGG-AATATTATTAAGCACAATAACATATTAAGTACCGCTTATATAATGTAATAGGTAGCGCT
9089588 TATATAATAAAATATGTTAATT
65 TATATAATAAAATATGTTAATT
* * ** *
9089610 ATTGGAA-ATTATTAAGTACAATAACATATTACGTACAACTTATATAATGTAATATGTAGCGCTT
1 ATTGGAATATTATTAAGCACAATAACATATTAAGTACCGCTTATATAATGTAATAGGTAGCGCTT
9089674 ATATAATAAAATA-GTTAATT
66 ATATAATAAAATATGTTAATT
* ** * * * *
9089694 ACTAAAATATTATTAAGCACAATAACATATTAGGTAGCGCTTATATAACGTAATAGGTAGTGCTT
1 ATTGGAATATTATTAAGCACAATAACATATTAAGTACCGCTTATATAATGTAATAGGTAGCGCTT
9089759 ATATAATAAAATATGTTAATT
66 ATATAATAAAATATGTTAATT
9089780 ATT
1 ATT
9089783 TAATATGTTA
Statistics
Matches: 152, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
84 11 0.07
85 125 0.82
86 11 0.07
87 5 0.03
ACGTcount: A:0.43, C:0.10, G:0.12, T:0.36
Consensus pattern (86 bp):
ATTGGAATATTATTAAGCACAATAACATATTAAGTACCGCTTATATAATGTAATAGGTAGCGCTT
ATATAATAAAATATGTTAATT
Found at i:9089750 original size:23 final size:23
Alignment explanation
Indices: 9089715--9089764 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
9089705 ATTAAGCACA
*
9089715 ATAACATATTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
* *
9089738 ATAACGTAATAGGTAGTGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
9089761 ATAA
1 ATAA
9089765 TAAAATATGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.38, C:0.10, G:0.18, T:0.34
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:9089771 original size:23 final size:23
Alignment explanation
Indices: 9089715--9089771 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
9089705 ATTAAGCACA
* *
9089715 ATAACATATTAGGTAGCGCTTAT
1 ATAACAAAATAGGTAGCGCTTAT
** *
9089738 ATAACGTAATAGGTAGTGCTTAT
1 ATAACAAAATAGGTAGCGCTTAT
*
9089761 ATAATAAAATA
1 ATAACAAAATA
9089772 TGTTAATTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.42, C:0.09, G:0.16, T:0.33
Consensus pattern (23 bp):
ATAACAAAATAGGTAGCGCTTAT
Found at i:9090184 original size:23 final size:23
Alignment explanation
Indices: 9090134--9090178 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
9090124 AAGCTATTTT
*
9090134 ATTATATAAGCGCTACCTATTAC
1 ATTATATAAGCGCTACCTAATAC
9090157 ATTATATAAGCGCTACCTAATA
1 ATTATATAAGCGCTACCTAATA
9090179 TGTTATTGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (23 bp):
ATTATATAAGCGCTACCTAATAC
Found at i:9090364 original size:23 final size:23
Alignment explanation
Indices: 9090212--9090356 Score: 229
Period size: 23 Copynumber: 6.3 Consensus size: 23
9090202 CTAGTAATTA
**
9090212 ACCTATTTTATTATATAAGCGCT
1 ACCTATTACATTATATAAGCGCT
* *
9090235 ACATATTACA-TATATAAGTGCT
1 ACCTATTACATTATATAAGCGCT
*
9090257 ACCTATTACATTATATAAGCTCT
1 ACCTATTACATTATATAAGCGCT
9090280 ACCTATTACATTATATAAGCGCT
1 ACCTATTACATTATATAAGCGCT
*
9090303 ACCTATTACATTATATAAGCTCT
1 ACCTATTACATTATATAAGCGCT
9090326 ACCTATTACATTATATAAGCGCT
1 ACCTATTACATTATATAAGCGCT
9090349 ACCTATTA
1 ACCTATTA
9090357 TATCATATTT
Statistics
Matches: 111, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
22 20 0.18
23 91 0.82
ACGTcount: A:0.35, C:0.20, G:0.07, T:0.38
Consensus pattern (23 bp):
ACCTATTACATTATATAAGCGCT
Found at i:9096922 original size:60 final size:60
Alignment explanation
Indices: 9096837--9096952 Score: 162
Period size: 60 Copynumber: 1.9 Consensus size: 60
9096827 ACAAAATGGT
*
9096837 CCCTCAACTATAAGGCCTTGCTTTGTTGAG-TATCATGACTATTAAAAGTTATAAAATGAC
1 CCCTCAACTATAAGGCCATGCTTTGTTGAGTTATCAT-ACTATTAAAAGTTATAAAATGAC
* ** * *
9096897 CCCTCAACTATAGGGTGATGCTTTGTTGAGTTCTCCTACTATTAAAAGTTATAAAA
1 CCCTCAACTATAAGGCCATGCTTTGTTGAGTTATCATACTATTAAAAGTTATAAAA
9096953 GGGTCACCTG
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
60 45 0.92
61 4 0.08
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (60 bp):
CCCTCAACTATAAGGCCATGCTTTGTTGAGTTATCATACTATTAAAAGTTATAAAATGAC
Found at i:9100931 original size:5 final size:5
Alignment explanation
Indices: 9100921--9101067 Score: 70
Period size: 5 Copynumber: 29.4 Consensus size: 5
9100911 AAAGGAAAAT
* * * *
9100921 AATAA AAT-A AATAA CATAA AGTAA AGTAA AATAAA AACAA AAT-A AATAA
1 AATAA AATAA AATAA AATAA AATAA AATAA AAT-AA AATAA AATAA AATAA
* * * * * *
9100970 AAT-A AATAG AACAA AGA-AA AATAA AATAGG AATAA GATAA TA-AA AAGAA
1 AATAA AATAA AATAA A-ATAA AATAA AATA-A AATAA AATAA AATAA AATAA
* * * * * *
9101019 TATTA AATCA AATAAA AACAAA AATAA CACAA AATAA AATAA AATAA AA
1 AATAA AATAA AAT-AA AA-TAA AATAA AATAA AATAA AATAA AATAA AA
9101068 CTACAATATA
Statistics
Matches: 106, Mismatches: 26, Indels: 20
0.70 0.17 0.13
Matches are distributed among these distances:
4 16 0.15
5 74 0.70
6 16 0.15
ACGTcount: A:0.73, C:0.05, G:0.05, T:0.17
Consensus pattern (5 bp):
AATAA
Found at i:9100939 original size:9 final size:9
Alignment explanation
Indices: 9100916--9101066 Score: 61
Period size: 9 Copynumber: 16.9 Consensus size: 9
9100906 TCCAAAAAGG
9100916 AAAAT-AAT
1 AAAATAAAT
9100924 AAAATAAAT
1 AAAATAAAT
*
9100933 AACATAAAGT
1 AAAATAAA-T
*
9100943 AAAGTAAA-
1 AAAATAAAT
* *
9100951 ATAA-AAAC
1 AAAATAAAT
9100959 AAAATAAAT
1 AAAATAAAT
9100968 AAAATAAAT
1 AAAATAAAT
* *
9100977 AGAA-CAA-
1 AAAATAAAT
*
9100984 AGAA-AAAT
1 AAAATAAAT
9100992 AAAATAGGAAT
1 AAAATA--AAT
*
9101003 AAGAT-AAT
1 AAAATAAAT
9101011 AAAA-AGAAT
1 AAAATA-AAT
9101020 ATTAAATCAAAT
1 A--AAAT-AAAT
*
9101032 AAAA-ACA-
1 AAAATAAAT
*
9101039 AAAATAACAC
1 AAAATAA-AT
9101049 AAAATAAAAT
1 AAAAT-AAAT
9101059 AAAATAAA
1 AAAATAAA
9101067 ACTACAATAT
Statistics
Matches: 109, Mismatches: 16, Indels: 35
0.68 0.10 0.22
Matches are distributed among these distances:
7 13 0.12
8 24 0.22
9 34 0.31
10 21 0.19
11 12 0.11
12 4 0.04
13 1 0.01
ACGTcount: A:0.73, C:0.05, G:0.05, T:0.17
Consensus pattern (9 bp):
AAAATAAAT
Found at i:9101168 original size:2 final size:2
Alignment explanation
Indices: 9101163--9101191 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
9101153 AAAAACAGAA
9101163 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
9101192 AAGTGTTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9114763 original size:5 final size:5
Alignment explanation
Indices: 9114755--9114918 Score: 60
Period size: 5 Copynumber: 33.4 Consensus size: 5
9114745 AAAGAAAAAT
* * * * *
9114755 AATAA AAT-A AATAA CATAA AGTAA AGTAA AGTAA AA-AA CAAAATA AATAA
1 AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATAA -AATA-A AATAA
* * * * *
9114805 AAT-A AATAG AACAA AGA-AA AATAA AATAGG AATAA AATAA GA-AA AAGAA
1 AATAA AATAA AATAA A-ATAA AATAA AATA-A AATAA AATAA AATAA AATAA
* * * * *
9114854 TATTA AATCA AATAAA AATAGA AACAA AA-AA ACACAA AAT-- AATAA
1 AATAA AATAA AAT-AA AATA-A AATAA AATAA A-ATAA AATAA AATAA
9114899 AATAA AAT-- AATAA AATAA AA
1 AATAA AATAA AATAA AATAA AA
9114919 ATACAATATA
Statistics
Matches: 122, Mismatches: 20, Indels: 34
0.69 0.11 0.19
Matches are distributed among these distances:
3 6 0.05
4 17 0.14
5 78 0.64
6 20 0.16
7 1 0.01
ACGTcount: A:0.73, C:0.04, G:0.06, T:0.16
Consensus pattern (5 bp):
AATAA
Found at i:9114767 original size:9 final size:9
Alignment explanation
Indices: 9114750--9114812 Score: 60
Period size: 9 Copynumber: 7.1 Consensus size: 9
9114740 CAAAAAAAGA
9114750 AAAAT-AAT
1 AAAATAAAT
9114758 AAAATAAAT
1 AAAATAAAT
*
9114767 AACATAAAGT
1 AAAATAAA-T
*
9114777 AAAGTAAAGT
1 AAAATAAA-T
*
9114787 -AAA-AAAC
1 AAAATAAAT
9114794 AAAATAAAT
1 AAAATAAAT
9114803 AAAATAAAT
1 AAAATAAAT
9114812 A
1 A
9114813 GAACAAAGAA
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
8 11 0.24
9 25 0.56
10 9 0.20
ACGTcount: A:0.73, C:0.03, G:0.05, T:0.19
Consensus pattern (9 bp):
AAAATAAAT
Found at i:9114907 original size:13 final size:13
Alignment explanation
Indices: 9114889--9114972 Score: 61
Period size: 13 Copynumber: 6.5 Consensus size: 13
9114879 AAAAAAACAC
9114889 AAAATAATAAAAT
1 AAAATAATAAAAT
9114902 AAAATAATAAAAT
1 AAAATAATAAAAT
*
9114915 -AAA-AATACAAT
1 AAAATAATAAAAT
* *
9114926 ATATATATATATAAT
1 A-AAATA-ATAAAAT
9114941 AAAA-AATGAAAA-
1 AAAATAAT-AAAAT
*
9114953 AATATAA-AAAAT
1 AAAATAATAAAAT
9114965 ATAAATAA
1 A-AAATAA
9114973 CATTATGTAA
Statistics
Matches: 56, Mismatches: 7, Indels: 16
0.71 0.09 0.20
Matches are distributed among these distances:
11 11 0.20
12 9 0.16
13 26 0.46
14 3 0.05
15 7 0.12
ACGTcount: A:0.73, C:0.01, G:0.01, T:0.25
Consensus pattern (13 bp):
AAAATAATAAAAT
Found at i:9117012 original size:35 final size:35
Alignment explanation
Indices: 9116915--9117017 Score: 83
Period size: 35 Copynumber: 3.0 Consensus size: 35
9116905 CTACAATTTT
9116915 AAATAAAAA-AATTAATATTATT-A-TAT-TTTATTA
1 AAATAAAAATAA-T-ATATTATTAAGTATATTTATTA
* * * *
9116948 AAAT-AAAATTAT-TATAATGATGTTAATATTTATTA
1 AAATAAAAATAATATATTATTAAG-T-ATATTTATTA
*
9116983 AAATAAAAATAATATATTATTAAGTATATTAATTA
1 AAATAAAAATAATATATTATTAAGTATATTTATTA
9117018 CTTATTAAAA
Statistics
Matches: 53, Mismatches: 9, Indels: 14
0.70 0.12 0.18
Matches are distributed among these distances:
30 5 0.09
32 5 0.09
33 6 0.11
34 2 0.04
35 20 0.38
36 8 0.15
37 7 0.13
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (35 bp):
AAATAAAAATAATATATTATTAAGTATATTTATTA
Found at i:9117262 original size:30 final size:28
Alignment explanation
Indices: 9117213--9117283 Score: 81
Period size: 27 Copynumber: 2.4 Consensus size: 28
9117203 AGTATAATTT
**
9117213 AATAATTAATATTTTTATTAAAATAATACTAA
1 AATAA-TAATATTAATATT-AAAT-ATA-TAA
9117245 AATAAT-ATATTAATATTAAATATATAA
1 AATAATAATATTAATATTAAATATATAA
9117272 AATAATAATATT
1 AATAATAATATT
9117284 TTGAGTATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
27 9 0.25
28 8 0.22
29 4 0.11
30 9 0.25
31 1 0.03
32 5 0.14
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.42
Consensus pattern (28 bp):
AATAATAATATTAATATTAAATATATAA
Found at i:9117277 original size:19 final size:19
Alignment explanation
Indices: 9117231--9117278 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
9117221 ATATTTTTAT
9117231 TAAAATAATACTAAAATAA
1 TAAAATAATACTAAAATAA
* * *
9117250 TATATTAATA-TTAAATATA
1 TAAAATAATACTAAAATA-A
9117269 TAAAATAATA
1 TAAAATAATA
9117279 ATATTTTGAG
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
18 6 0.26
19 17 0.74
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (19 bp):
TAAAATAATACTAAAATAA
Found at i:9117687 original size:22 final size:21
Alignment explanation
Indices: 9117653--9117693 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
9117643 ATAATTATTT
9117653 AAAAAATTAAATAAAAATACC
1 AAAAAATTAAATAAAAATACC
*
9117674 AAAAATATTTAATAAAAATA
1 AAAAA-ATTAAATAAAAATA
9117694 TTTTTTTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (21 bp):
AAAAAATTAAATAAAAATACC
Found at i:9122436 original size:166 final size:166
Alignment explanation
Indices: 9122162--9122495 Score: 659
Period size: 166 Copynumber: 2.0 Consensus size: 166
9122152 CCTCAAATCG
9122162 TTATGATTTTTATTGCAAACTTGTAACATTATGGTGAAGTCTGTGAGTGAGGGCTGAAGAAATGA
1 TTATGATTTTTATTGCAAACTTGTAACATTATGGTGAAGTCTGTGAGTGAGGGCTGAAGAAATGA
*
9122227 TGAAGCCTTTTGTATCATTTCTTAGTGTAATGAAAAATGTTTTTGGTTTAATTTCTTCTCTACTT
66 TGAAGCCTTTTGTATCATTTCTTAGTGTAATGAAAAATGTTTTTGGTTAAATTTCTTCTCTACTT
9122292 ATTTAAGCATTTTTTAACTTTTTATTTATTTATTTA
131 ATTTAAGCATTTTTTAACTTTTTATTTATTTATTTA
9122328 TTATGATTTTTATTGCAAACTTGTAACATTATGGTGAAGTCTGTGAGTGAGGGCTGAAGAAATGA
1 TTATGATTTTTATTGCAAACTTGTAACATTATGGTGAAGTCTGTGAGTGAGGGCTGAAGAAATGA
9122393 TGAAGCCTTTTGTATCATTTCTTAGTGTAATGAAAAATGTTTTTGGTTAAATTTCTTCTCTACTT
66 TGAAGCCTTTTGTATCATTTCTTAGTGTAATGAAAAATGTTTTTGGTTAAATTTCTTCTCTACTT
9122458 ATTTAAGCATTTTTTAACTTTTTATTTATTTATTTA
131 ATTTAAGCATTTTTTAACTTTTTATTTATTTATTTA
9122494 TT
1 TT
9122496 TATTTATTTA
Statistics
Matches: 167, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
166 167 1.00
ACGTcount: A:0.27, C:0.09, G:0.16, T:0.48
Consensus pattern (166 bp):
TTATGATTTTTATTGCAAACTTGTAACATTATGGTGAAGTCTGTGAGTGAGGGCTGAAGAAATGA
TGAAGCCTTTTGTATCATTTCTTAGTGTAATGAAAAATGTTTTTGGTTAAATTTCTTCTCTACTT
ATTTAAGCATTTTTTAACTTTTTATTTATTTATTTA
Found at i:9122487 original size:4 final size:4
Alignment explanation
Indices: 9122478--9122506 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
9122468 TTTTTAACTT
9122478 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
9122507 GATATTTGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:9135672 original size:42 final size:41
Alignment explanation
Indices: 9135626--9135751 Score: 106
Period size: 35 Copynumber: 3.2 Consensus size: 41
9135616 TTTAGGATAT
9135626 TATTTTTATATTTTATCTTTGTTTTAGGTAATTTAGTTTAAA
1 TATTTTTATATTTTATCTTTGTTTTAGGT-ATTTAGTTTAAA
* * ** *
9135668 TA-TTTT-TA--TTAT-TTT-TAATTAAGT-TTTAGGAT-AT
1 TATTTTTATATTTTATCTTTGT-TTTAGGTATTTAGTTTAAA
*
9135702 TATTTTTATATTTTATCTTCGTTTTAGGTATTTTAGTTTAAA
1 TATTTTTATATTTTATCTTTGTTTTAGGTA-TTTAGTTTAAA
*
9135744 TAGTTTTA
1 TATTTTTA
9135752 AGTGTTTAAA
Statistics
Matches: 62, Mismatches: 12, Indels: 20
0.66 0.13 0.21
Matches are distributed among these distances:
34 3 0.05
35 10 0.16
36 3 0.05
37 8 0.13
38 8 0.13
39 7 0.11
40 3 0.05
41 10 0.16
42 10 0.16
ACGTcount: A:0.26, C:0.02, G:0.10, T:0.62
Consensus pattern (41 bp):
TATTTTTATATTTTATCTTTGTTTTAGGTATTTAGTTTAAA
Found at i:9135696 original size:76 final size:76
Alignment explanation
Indices: 9135605--9135751 Score: 258
Period size: 76 Copynumber: 1.9 Consensus size: 76
9135595 GTTATTTTAG
*
9135605 TTTAAATAAGTTTTAGGATATTATTTTTATATTTTATCTTTGTTTTAGGTAATTTAGTTTAAATA
1 TTTAAATAAGTTTTAGGATATTATTTTTATATTTTATCTTCGTTTTAGGTAATTTAGTTTAAATA
*
9135670 TTTTTATTATT
66 GTTTTATTATT
* *
9135681 TTTAATTAAGTTTTAGGATATTATTTTTATATTTTATCTTCGTTTTAGGTATTTTAGTTTAAATA
1 TTTAAATAAGTTTTAGGATATTATTTTTATATTTTATCTTCGTTTTAGGTAATTTAGTTTAAATA
9135746 GTTTTA
66 GTTTTA
9135752 AGTGTTTAAA
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
76 67 1.00
ACGTcount: A:0.28, C:0.02, G:0.10, T:0.60
Consensus pattern (76 bp):
TTTAAATAAGTTTTAGGATATTATTTTTATATTTTATCTTCGTTTTAGGTAATTTAGTTTAAATA
GTTTTATTATT
Found at i:9136372 original size:12 final size:11
Alignment explanation
Indices: 9136354--9136383 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
9136344 AATTCAATTA
9136354 TTTTATTTATT
1 TTTTATTTATT
9136365 TGTTTATTTATT
1 T-TTTATTTATT
9136377 TTTTATT
1 TTTTATT
9136384 CTTCTTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (11 bp):
TTTTATTTATT
Found at i:9136826 original size:55 final size:55
Alignment explanation
Indices: 9136732--9136859 Score: 222
Period size: 55 Copynumber: 2.3 Consensus size: 55
9136722 ACCCCCATAT
*
9136732 ATGGTACCGATACCCCTATGAACATTTTGATTCTGAGAAATAACAGAATGCTCGG
1 ATGGTACCGATACCCCTATGAACATTTTGATTCTAAGAAATAACAGAATGCTCGG
9136787 ATGGTACCGATACCCCTATGAACATTTT-AGTTCTAAGAAATAACAGAATGCTCGG
1 ATGGTACCGATACCCCTATGAACATTTTGA-TTCTAAGAAATAACAGAATGCTCGG
*
9136842 ATGGTACCAATACCCCTA
1 ATGGTACCGATACCCCTA
9136860 GTAGGTATCG
Statistics
Matches: 70, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
54 1 0.01
55 69 0.99
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.27
Consensus pattern (55 bp):
ATGGTACCGATACCCCTATGAACATTTTGATTCTAAGAAATAACAGAATGCTCGG
Found at i:9142722 original size:21 final size:21
Alignment explanation
Indices: 9142681--9142779 Score: 96
Period size: 23 Copynumber: 4.6 Consensus size: 21
9142671 CCTGATACAG
9142681 GTATCGATACGCCCTTTGAATA
1 GTATCGATAC-CCCTTTGAATA
*
9142703 GTTATCGATA-CCCATTGAATA
1 G-TATCGATACCCCTTTGAATA
*
9142724 GGTATCAATACCCTCTTTGAATGA
1 -GTATCGATACCC-CTTTGAAT-A
* *
9142748 GTATCGATACCCC-CTG-ATG
1 GTATCGATACCCCTTTGAATA
9142767 GTATCGATACCCC
1 GTATCGATACCCC
9142780 CTGTCGGGTT
Statistics
Matches: 66, Mismatches: 6, Indels: 13
0.78 0.07 0.15
Matches are distributed among these distances:
19 13 0.20
20 2 0.03
21 19 0.29
22 5 0.08
23 26 0.39
24 1 0.02
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.30
Consensus pattern (21 bp):
GTATCGATACCCCTTTGAATA
Found at i:9142728 original size:44 final size:42
Alignment explanation
Indices: 9142658--9142779 Score: 133
Period size: 44 Copynumber: 2.8 Consensus size: 42
9142648 TATGTGCATA
*
9142658 GAGTATTGATACCC-CTGATACAGGTATCGATACGCCCTTTGAAT
1 GAGTATCGATACCCACTGAT--AGGTATCGATAC-CCCTTTGAAT
* *
9142702 -AGTTATCGATACCCATTGAATAGGTATCAATACCCTCTTTGAAT
1 GAG-TATCGATACCCACTG-ATAGGTATCGATACCC-CTTTGAAT
*
9142746 GAGTATCGATACCCCCTGAT-GGTATCGATACCCC
1 GAGTATCGATACCCACTGATAGGTATCGATACCCC
9142780 CTGTCGGGTT
Statistics
Matches: 67, Mismatches: 6, Indels: 13
0.78 0.07 0.15
Matches are distributed among these distances:
41 1 0.01
42 12 0.18
43 6 0.09
44 42 0.63
45 4 0.06
46 2 0.03
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (42 bp):
GAGTATCGATACCCACTGATAGGTATCGATACCCCTTTGAAT
Found at i:9143143 original size:48 final size:50
Alignment explanation
Indices: 9143048--9143143 Score: 160
Period size: 48 Copynumber: 2.0 Consensus size: 50
9143038 TAGAACTAGT
**
9143048 TTAGAGTAGTTCTAGTTTGAAATAATTATTGGGCATTGATTGTTTAATGA
1 TTAGAGTAGTTCTAGTTTGAAATAATTATTGGGCATTGATTCATTAATGA
9143098 TTAGAGTAG-T-TAGTTTGAAATAATTATTGGGCATTGATTCATTAAT
1 TTAGAGTAGTTCTAGTTTGAAATAATTATTGGGCATTGATTCATTAAT
9143144 ATGTTTTTGA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
48 34 0.77
49 1 0.02
50 9 0.20
ACGTcount: A:0.31, C:0.04, G:0.21, T:0.44
Consensus pattern (50 bp):
TTAGAGTAGTTCTAGTTTGAAATAATTATTGGGCATTGATTCATTAATGA
Found at i:9145396 original size:75 final size:75
Alignment explanation
Indices: 9145276--9145445 Score: 254
Period size: 75 Copynumber: 2.3 Consensus size: 75
9145266 TTTATTTAGT
* *
9145276 ATGGTATCGATACCCCCATATATGGTACCGATACCCCTATGAACATTTT-GATTCCGAGAAATAA
1 ATGGTACCGATACCCCC-TATATGGTACCAATACCCCTATGAACATTTTAG-TTCCGAGAAATAA
9145340 CAGAATGCTCGG
64 CAGAATGCTCGG
*
9145352 ATGGTACCGATACCCCCTAT-TGGGTACCAATACCCCTATGAACATTTTAGTTCTGAGAAATAAC
1 ATGGTACCGATACCCCCTATAT-GGTACCAATACCCCTATGAACATTTTAGTTCCGAGAAATAAC
9145416 AGAATGCTCGG
65 AGAATGCTCGG
* *
9145427 ATAGTACCAATACCCCCTA
1 ATGGTACCGATACCCCCTA
9145446 GTAGGTATTG
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
74 1 0.01
75 69 0.79
76 17 0.20
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (75 bp):
ATGGTACCGATACCCCCTATATGGTACCAATACCCCTATGAACATTTTAGTTCCGAGAAATAACA
GAATGCTCGG
Found at i:9145460 original size:75 final size:75
Alignment explanation
Indices: 9145285--9145467 Score: 244
Period size: 75 Copynumber: 2.4 Consensus size: 75
9145275 TATGGTATCG
9145285 ATACCCCCATA-TATGGTACCGATACCCCTATGAACATTTTGATTCCGAGAAATAACAGAATGCT
1 ATACCCCC-TAGTA-GGTACCGATACCCCTATGAACATTTTGATTCCGAGAAATAACAGAATGCT
* *
9145349 CGGATGGTACCG
64 CGGATAGTACCA
* * * *
9145361 ATACCCCCTATTGGGTACCAATACCCCTATGAACATTTT-AGTTCTGAGAAATAACAGAATGCTC
1 ATACCCCCTAGTAGGTACCGATACCCCTATGAACATTTTGA-TTCCGAGAAATAACAGAATGCTC
9145425 GGATAGTACCA
65 GGATAGTACCA
** *
9145436 ATACCCCCTAGTAGGTATTGATACCCCCATGA
1 ATACCCCCTAGTAGGTACCGATACCCCTATGA
9145468 TATGGTATCG
Statistics
Matches: 94, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
74 1 0.01
75 84 0.89
76 9 0.10
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (75 bp):
ATACCCCCTAGTAGGTACCGATACCCCTATGAACATTTTGATTCCGAGAAATAACAGAATGCTCG
GATAGTACCA
Found at i:9145495 original size:21 final size:20
Alignment explanation
Indices: 9145436--9145504 Score: 61
Period size: 22 Copynumber: 3.3 Consensus size: 20
9145426 GATAGTACCA
* *
9145436 ATACCCCCTAGTAGGTATTG
1 ATACCCCCTATTAGGTATCG
9145456 ATACCCCC-ATGATATGGTATCG
1 ATACCCCCTAT--TA-GGTATCG
9145478 ATACCCCCTACTTAGGTA-CTG
1 ATACCCCCTA-TTAGGTATC-G
9145499 ATACCC
1 ATACCC
9145505 TTAGGCATTT
Statistics
Matches: 41, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
19 1 0.02
20 9 0.22
21 13 0.32
22 16 0.39
23 1 0.02
24 1 0.02
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (20 bp):
ATACCCCCTATTAGGTATCG
Found at i:9151726 original size:5 final size:5
Alignment explanation
Indices: 9151704--9151745 Score: 54
Period size: 5 Copynumber: 8.8 Consensus size: 5
9151694 TCGTTCTATT
9151704 ATTT- ATTT- ATTT- ATTTC ATTTC ATTTC ATTTTC ATTTC ATTT
1 ATTTC ATTTC ATTTC ATTTC ATTTC ATTTC A-TTTC ATTTC ATTT
9151746 TTTATTTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
4 12 0.33
5 19 0.53
6 5 0.14
ACGTcount: A:0.21, C:0.12, G:0.00, T:0.67
Consensus pattern (5 bp):
ATTTC
Found at i:9151738 original size:11 final size:11
Alignment explanation
Indices: 9151716--9151746 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
9151706 TTATTTATTT
9151716 ATTTCA-TTTC
1 ATTTCATTTTC
9151726 ATTTCATTTTC
1 ATTTCATTTTC
9151737 ATTTCATTTT
1 ATTTCATTTT
9151747 TTATTTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 6 0.30
11 14 0.70
ACGTcount: A:0.19, C:0.16, G:0.00, T:0.65
Consensus pattern (11 bp):
ATTTCATTTTC
Found at i:9151928 original size:16 final size:17
Alignment explanation
Indices: 9151907--9151938 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
9151897 CAAACAATGC
9151907 AGTGCA-AAAAAAAAAT
1 AGTGCAGAAAAAAAAAT
9151923 AGTGCAGAAAAAAAAA
1 AGTGCAGAAAAAAAAA
9151939 CAGATTTGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.69, C:0.06, G:0.16, T:0.09
Consensus pattern (17 bp):
AGTGCAGAAAAAAAAAT
Found at i:9153865 original size:76 final size:75
Alignment explanation
Indices: 9153706--9153848 Score: 232
Period size: 76 Copynumber: 1.9 Consensus size: 75
9153696 TTTTAAATAT
* * *
9153706 TATATTTTATCTTTGTTTTAGGTATTTTGTTTAAATAGGTTTTAGTATTTTAATTAAGTTTTAGG
1 TATATTTTATCTTTGTTTTAGGTATTTTGTTTAAATAGGTTTTAGCATTTTAATTAAGATTTAAG
*
9153771 ATATTATTTA
66 ATAGTATTTA
*
9153781 TATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAGCATTTTAATTAGGATTTAA
1 TATATTTTATCTTTGTTTTAGGTATTTT-GTTTAAATAGGTTTTAGCATTTTAATTAAGATTTAA
9153846 GAT
65 GAT
9153849 GTTTTAGCTT
Statistics
Matches: 63, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
75 28 0.44
76 35 0.56
ACGTcount: A:0.27, C:0.02, G:0.14, T:0.57
Consensus pattern (75 bp):
TATATTTTATCTTTGTTTTAGGTATTTTGTTTAAATAGGTTTTAGCATTTTAATTAAGATTTAAG
ATAGTATTTA
Found at i:9154425 original size:21 final size:20
Alignment explanation
Indices: 9154386--9154427 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
9154376 AATTATTTTA
**
9154386 TTTATTTTTTTTATTTAATT
1 TTTATTTTTTTTAAATAATT
9154406 TTTATTCTTTTTTAAATAATT
1 TTTATT-TTTTTTAAATAATT
9154427 T
1 T
9154428 AAAACCCCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (20 bp):
TTTATTTTTTTTAAATAATT
Found at i:9154504 original size:17 final size:17
Alignment explanation
Indices: 9154459--9154515 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
9154449 ACTATTACTA
*
9154459 TTTATTATTT-TATTAT
1 TTTATTATTTATTTTAT
*
9154475 TTCTCTT-TTTA-TTTAT
1 TT-TATTATTTATTTTAT
9154491 TATTATTATTTATTTTAT
1 T-TTATTATTTATTTTAT
9154509 TTTATTA
1 TTTATTA
9154516 AATATTTTCA
Statistics
Matches: 33, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
16 13 0.39
17 14 0.42
18 6 0.18
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTATTATTTATTTTAT
Found at i:9154511 original size:27 final size:27
Alignment explanation
Indices: 9154457--9154523 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 27
9154447 TTACTATTAC
*
9154457 TATTTATTATTTTATTATTTCTCTTTT
1 TATTTATTATTTTATTATTTCTCATTT
9154484 TATTTATTATTATTATTTATTT-T-ATTT
1 TATTTATTATT-TTA-TTATTTCTCATTT
* *
9154511 TATTAAATATTTT
1 TATTTATTATTTT
9154524 CAAATTTACC
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
26 2 0.06
27 23 0.66
28 4 0.11
29 6 0.17
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (27 bp):
TATTTATTATTTTATTATTTCTCATTT
Found at i:9154521 original size:17 final size:18
Alignment explanation
Indices: 9154486--9154523 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
9154476 TCTCTTTTTA
**
9154486 TTTATTATTATTATTTAT
1 TTTATTATTATTAAATAT
9154504 TTTATT-TTATTAAATAT
1 TTTATTATTATTAAATAT
9154521 TTT
1 TTT
9154524 CAAATTTACC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTATTATTATTAAATAT
Found at i:9155620 original size:17 final size:17
Alignment explanation
Indices: 9155595--9155642 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
9155585 ACCTATTCAT
*
9155595 AATATAAAATAATACAA
1 AATAAAAAATAATACAA
**
9155612 AATAAAAAATACAT-GTA
1 AATAAAAAATA-ATACAA
9155629 AATAAAAAATAATA
1 AATAAAAAATAATA
9155643 TTATAAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 2 0.08
17 22 0.85
18 2 0.08
ACGTcount: A:0.71, C:0.04, G:0.02, T:0.23
Consensus pattern (17 bp):
AATAAAAAATAATACAA
Found at i:9155727 original size:18 final size:18
Alignment explanation
Indices: 9155706--9155743 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
9155696 TGTAAGTAAA
9155706 AGTAATAAATCAAGTAGT
1 AGTAATAAATCAAGTAGT
9155724 AGTAATAAATCAAGTAGT
1 AGTAATAAATCAAGTAGT
9155742 AG
1 AG
9155744 ATGATGTAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.50, C:0.05, G:0.18, T:0.26
Consensus pattern (18 bp):
AGTAATAAATCAAGTAGT
Found at i:9163387 original size:19 final size:20
Alignment explanation
Indices: 9163363--9163402 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
9163353 AAAATGTTTT
*
9163363 TATGAATAGTATTG-TACTG
1 TATGAATAGTACTGATACTG
9163382 TATGAATAGTACTGATACTG
1 TATGAATAGTACTGATACTG
9163402 T
1 T
9163403 GTAAACAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.40
Consensus pattern (20 bp):
TATGAATAGTACTGATACTG
Found at i:9164436 original size:35 final size:35
Alignment explanation
Indices: 9164390--9164461 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 35
9164380 CCAAAAAAGA
*
9164390 AGAGTTGGATTAGGACTCAAAGACTATTCTAAAAT
1 AGAGTTGGATTAGGACTCAAAGACTAGTCTAAAAT
*
9164425 AGAGTTGGATTAGGACTCAAATACTAGTCTAAAAT
1 AGAGTTGGATTAGGACTCAAAGACTAGTCTAAAAT
9164460 AG
1 AG
9164462 GGTTTTTAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.40, C:0.11, G:0.21, T:0.28
Consensus pattern (35 bp):
AGAGTTGGATTAGGACTCAAAGACTAGTCTAAAAT
Found at i:9164958 original size:43 final size:46
Alignment explanation
Indices: 9164896--9164985 Score: 107
Period size: 45 Copynumber: 2.0 Consensus size: 46
9164886 ATTTTTAAAT
* * * *
9164896 TATTTCATTTGATTTTTTAC-TAT-ATTTTATTATATA-TATATATA
1 TATTTCATTTAATATTTTACTTATAAGTCTATTAT-TACTATATATA
9164940 TATTTC-TTTAATATTTTACTTATAAGTCTATTATTACTATATATA
1 TATTTCATTTAATATTTTACTTATAAGTCTATTATTACTATATATA
9164985 T
1 T
9164986 TGAAATTATC
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
43 11 0.28
44 11 0.28
45 17 0.44
ACGTcount: A:0.32, C:0.07, G:0.02, T:0.59
Consensus pattern (46 bp):
TATTTCATTTAATATTTTACTTATAAGTCTATTATTACTATATATA
Found at i:9169792 original size:8 final size:8
Alignment explanation
Indices: 9169769--9169815 Score: 53
Period size: 8 Copynumber: 6.0 Consensus size: 8
9169759 AGATTCAATC
*
9169769 AAGAACAA
1 AAGAAGAA
9169777 AA-AAGAA
1 AAGAAGAA
9169784 AAGAAGAA
1 AAGAAGAA
*
9169792 AAAAAGAA
1 AAGAAGAA
9169800 AAGAAGCAA
1 AAGAAG-AA
9169809 AA-AAGAA
1 AAGAAGAA
9169816 TAAACAAGAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
7 8 0.24
8 22 0.65
9 4 0.12
ACGTcount: A:0.79, C:0.04, G:0.17, T:0.00
Consensus pattern (8 bp):
AAGAAGAA
Found at i:9169796 original size:16 final size:17
Alignment explanation
Indices: 9169769--9169847 Score: 81
Period size: 18 Copynumber: 4.5 Consensus size: 17
9169759 AGATTCAATC
9169769 AAGAACAAAAAAGAAAAG
1 AAGAA-AAAAAAGAAAAG
9169787 AAG-AAAAAAAGAAAAG
1 AAGAAAAAAAAGAAAAG
* *
9169803 AAGCAAAAAAGAA-TAAAC
1 AAG-AAAAAA-AAGAAAAG
9169821 AAGAACAAAAAAGAAAAG
1 AAGAA-AAAAAAGAAAAG
9169839 AAGTAAAAA
1 AAG-AAAAA
9169848 TCAAAAGAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
16 15 0.29
17 5 0.10
18 27 0.53
19 4 0.08
ACGTcount: A:0.77, C:0.05, G:0.15, T:0.03
Consensus pattern (17 bp):
AAGAAAAAAAAGAAAAG
Found at i:9169837 original size:36 final size:32
Alignment explanation
Indices: 9169769--9169847 Score: 97
Period size: 36 Copynumber: 2.4 Consensus size: 32
9169759 AGATTCAATC
*
9169769 AAGAA-CAAAAAAGAAAAGAAGAAAAAAAGAA
1 AAGAAGCAAAAAAGAAAACAAGAAAAAAAGAA
9169800 AAGAAGCAAAAAAGAATAAACAAGAACAAAAAAGAA
1 AAGAAGCAAAAAAG-A-AAACAAG-A-AAAAAAGAA
*
9169836 AAGAAGTAAAAA
1 AAGAAGCAAAAA
9169848 TCAAAAGAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
31 5 0.12
32 8 0.20
33 1 0.02
34 6 0.15
35 1 0.02
36 20 0.49
ACGTcount: A:0.77, C:0.05, G:0.15, T:0.03
Consensus pattern (32 bp):
AAGAAGCAAAAAAGAAAACAAGAAAAAAAGAA
Found at i:9169847 original size:10 final size:9
Alignment explanation
Indices: 9169769--9169847 Score: 51
Period size: 8 Copynumber: 8.9 Consensus size: 9
9169759 AGATTCAATC
*
9169769 AAGAACAAAA
1 AAGAA-AAAG
9169779 AAG-AAAAG
1 AAGAAAAAG
9169787 AAGAAAAA-
1 AAGAAAAAG
9169795 AAG-AAAAG
1 AAGAAAAAG
*
9169803 AAGCAAAA-
1 AAGAAAAAG
*
9169811 AAGAATAAAC
1 AAGAA-AAAG
*
9169821 AAGAACAAAA
1 AAGAA-AAAG
9169831 AAG-AAAAG
1 AAGAAAAAG
9169839 AAGTAAAAA
1 AAG-AAAAA
9169848 TCAAAAGAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 14
0.75 0.07 0.18
Matches are distributed among these distances:
7 4 0.07
8 22 0.39
9 13 0.23
10 18 0.32
ACGTcount: A:0.77, C:0.05, G:0.15, T:0.03
Consensus pattern (9 bp):
AAGAAAAAG
Found at i:9170930 original size:18 final size:18
Alignment explanation
Indices: 9170907--9170942 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
9170897 TCAACATCAA
*
9170907 ATATTGGGGCATTTTTGG
1 ATATTGGGGCATCTTTGG
9170925 ATATTGGGGCATCTTTGG
1 ATATTGGGGCATCTTTGG
9170943 GGATTCAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.08, G:0.33, T:0.42
Consensus pattern (18 bp):
ATATTGGGGCATCTTTGG
Found at i:9172585 original size:106 final size:106
Alignment explanation
Indices: 9172345--9173176 Score: 1028
Period size: 106 Copynumber: 8.0 Consensus size: 106
9172335 ATCGCGCCAT
* * * * *
9172345 TCGAGATAACACAAGTTCAACTTCACAACGAAGGGATGACTGGTTGTCAACAAACCACTTT-TCA
1 TCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAA-CAATTTCCCA
* * *
9172409 GTTTCATTCAGAGCCAATTTTAACTTCACAGCGAAAGATATTGGAC
65 --AT--TTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGAC
* * **
9172455 TAGAGACAACACAAGTTCAGCTTCACAACGAAGGGATAGCTGGTTGTCAACAAACAATTTCCCAA
1 TCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAA
* * *
9172520 TTTCAGAGCCAATTTCAACTTCACATCGAAGGATGTTAGAC
66 TTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGAC
* *
9172561 TCGGGACAACACAAGTTCAACTTCACAACGAA-GG--GG--GGTGGTCAACAAACAATTTCCCAA
1 TCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAA
* *
9172621 TTTCAGAGTCAATTTCAACTTCACAACGAAGGATATTGGAC
66 TTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGAC
* *
9172662 TCAAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATCTCCCAA
1 TCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAA
9172727 TTTCAGAG-C-A----AA--T---AGCGAAGGATATTGGAC
66 TTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGAC
* * *
9172757 TCGAGACGACACAAGTTCAACTTCACAACAAAGGGACGACTGGTTGTCAACAAACAATTTCCCAA
1 TCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAA
* * *
9172822 TTTCAGGGTCAATTTCAACTTCACATCGAAGGATATTGGAC
66 TTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGAC
*
9172863 TCGAGAC--CACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAATAATTTCCCAA
1 TCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAA
9172926 TTTCAGAGCCAATTTCAACTTCACAGCG-AGGATATT-GAC
66 TTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGAC
* *
9172965 TCGAGACGACACAAGTTC-ACTTCACAACGAA-GGACGGCTGGTTGTCAACAAATAATTTCCCAA
1 TCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAA
* * * *
9173028 TTTCAG-GTCAATTTCAACTTCACATCGAATGATATTAGAC
66 TTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGAC
* * * * * * * * *
9173068 TCAAGACAACACAAGCTCAACTTCACAGCGAAGGGGCAGTTGGTTGTCAACAAATAATTTTCCAG
1 TCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAA
* * * *
9173133 TTCCAGAGACAATTTCAACTTCACGGCGGAGGATATTGGAC
66 TTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGAC
9173174 TCG
1 TCG
9173177 GAACAATACA
Statistics
Matches: 638, Mismatches: 60, Indels: 52
0.85 0.08 0.07
Matches are distributed among these distances:
95 83 0.13
96 1 0.00
97 1 0.00
98 1 0.00
100 2 0.00
101 111 0.17
102 57 0.09
103 41 0.06
104 102 0.16
105 35 0.05
106 147 0.23
108 1 0.00
109 5 0.01
110 51 0.08
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (106 bp):
TCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAA
TTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGAC
Found at i:9172716 original size:207 final size:207
Alignment explanation
Indices: 9172353--9173176 Score: 1011
Period size: 207 Copynumber: 4.0 Consensus size: 207
9172343 ATTCGAGATA
* * *
9172353 ACACAAGTTCAACTTCACAACGAAGGGATGACTGGTTGTCAACAAACCACTTT-TCAGTTTCATT
1 ACACAAGTTCAACTTCACAACGAAGGG--G-C-GGTTGTCAACAAA-CAATTTCCCA--AT--TT
* * * * *
9172417 CAGAGCCAATTTTAACTTCACAGCGAAAGATATTGGACT-AGAGACAACACAAGTTCAGCTTCAC
57 CAGAGTCAATTTCAACTTCACATCGAAGGATATTGGACTCA-AGACAACACAAGTTCAACTTCAC
* *
9172481 AACGAAGGGATAGCTGGTTGTCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAT
121 AACGAAGGGACAGCTGGTTGTCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAG
* * *
9172546 CGAAGGATGTTAGACTCGGGACA
186 CGAAGGATATT-GACTCGAGACG
*
9172569 ACACAAGTTCAACTTCACAACGAAGGGG-GGTGGTCAACAAACAATTTCCCAATTTCAGAGTCAA
1 ACACAAGTTCAACTTCACAACGAAGGGGCGGTTGTCAACAAACAATTTCCCAATTTCAGAGTCAA
*
9172633 TTTCAACTTCACAACGAAGGATATTGGACTCAAGACAACACAAGTTCAACTTCACAACGAAGGGA
66 TTTCAACTTCACATCGAAGGATATTGGACTCAAGACAACACAAGTTCAACTTCACAACGAAGGGA
* *
9172698 CGGCTGGTTGTCAACAAACAATCTCCCAATTTCAGAG-C-A----AA--T---AGCGAAGGATAT
131 CAGCTGGTTGTCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATAT
9172752 TGGACTCGAGACG
196 T-GACTCGAGACG
* *
9172765 ACACAAGTTCAACTTCACAACAAAGGGACGACTGGTTGTCAACAAACAATTTCCCAATTTCAGGG
1 ACACAAGTTCAACTTCACAACGAAGGG--G-C-GGTTGTCAACAAACAATTTCCCAATTTCAGAG
*
9172830 TCAATTTCAACTTCACATCGAAGGATATTGGACTCGAGAC--CACAAGTTCAACTTCACAACGAA
62 TCAATTTCAACTTCACATCGAAGGATATTGGACTCAAGACAACACAAGTTCAACTTCACAACGAA
* *
9172893 GGGACGGCTGGTTGTCAACAAATAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCG-AGG
127 GGGACAGCTGGTTGTCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGG
9172957 ATATTGACTCGAGACG
192 ATATTGACTCGAGACG
*
9172973 ACACAAGTTC-ACTTCACAACGAAGGACGGCTGGTTGTCAACAAATAATTTCCCAATTTCAG-GT
1 ACACAAGTTCAACTTCACAACGAAGG--GGC-GGTTGTCAACAAACAATTTCCCAATTTCAGAGT
* * * *
9173036 CAATTTCAACTTCACATCGAATGATATTAGACTCAAGACAACACAAGCTCAACTTCACAGCGAAG
63 CAATTTCAACTTCACATCGAAGGATATTGGACTCAAGACAACACAAGTTCAACTTCACAACGAAG
* * * * * * * * *
9173101 GGGCAGTTGGTTGTCAACAAATAATTTTCCAGTTCCAGAGACAATTTCAACTTCACGGCGGAGGA
128 GGACAGCTGGTTGTCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGA
9173166 TATTGGACTCG
193 TATT-GACTCG
9173177 GAACAATACA
Statistics
Matches: 545, Mismatches: 39, Indels: 55
0.85 0.06 0.09
Matches are distributed among these distances:
196 46 0.08
198 1 0.00
199 63 0.12
200 1 0.00
201 71 0.13
205 41 0.08
206 32 0.06
207 193 0.35
208 30 0.06
209 16 0.03
210 9 0.02
211 14 0.03
214 1 0.00
216 27 0.05
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (207 bp):
ACACAAGTTCAACTTCACAACGAAGGGGCGGTTGTCAACAAACAATTTCCCAATTTCAGAGTCAA
TTTCAACTTCACATCGAAGGATATTGGACTCAAGACAACACAAGTTCAACTTCACAACGAAGGGA
CAGCTGGTTGTCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATAT
TGACTCGAGACG
Found at i:9172924 original size:104 final size:105
Alignment explanation
Indices: 9172740--9173176 Score: 616
Period size: 104 Copynumber: 4.2 Consensus size: 105
9172730 CAGAGCAAAT
* *
9172740 AGCGAAGGATATTGGACTCGAGACGACACAAGTTCAACTTCACAACAAAGGGACGACTGGTTGTC
1 AGCGAAGGATATTGGACTCGAGAC-ACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTC
* *
9172805 AACAAACAATTTCCCAATTTCAGGGTCAATTTCAACTTCAC
65 AACAAATAATTTCCCAATTTCAGAGTCAATTTCAACTTCAC
*
9172846 ATCGAAGGATATTGGACTCGAGAC-CACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCA
1 AGCGAAGGATATTGGACTCGAGACACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCA
*
9172910 ACAAATAATTTCCCAATTTCAGAGCCAATTTCAACTTCAC
66 ACAAATAATTTCCCAATTTCAGAGTCAATTTCAACTTCAC
9172950 AGCG-AGGATATT-GACTCGAGACGACACAAGTTC-ACTTCACAACGAA-GGACGGCTGGTTGTC
1 AGCGAAGGATATTGGACTCGAGAC-ACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTC
9173011 AACAAATAATTTCCCAATTTCAG-GTCAATTTCAACTTCAC
65 AACAAATAATTTCCCAATTTCAGAGTCAATTTCAACTTCAC
* * * * * * * * *
9173051 ATCGAATGATATTAGACTCAAGACAACACAAGCTCAACTTCACAGCGAAGGGGCAGTTGGTTGTC
1 AGCGAAGGATATTGGACTCGAGAC-ACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTC
* * * *
9173116 AACAAATAATTTTCCAGTTCCAGAGACAATTTCAACTTCAC
65 AACAAATAATTTCCCAATTTCAGAGTCAATTTCAACTTCAC
* *
9173157 GGCGGAGGATATTGGACTCG
1 AGCGAAGGATATTGGACTCG
9173177 GAACAATACA
Statistics
Matches: 297, Mismatches: 27, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
101 19 0.06
102 55 0.19
103 39 0.13
104 99 0.33
105 32 0.11
106 53 0.18
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (105 bp):
AGCGAAGGATATTGGACTCGAGACACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCA
ACAAATAATTTCCCAATTTCAGAGTCAATTTCAACTTCAC
Found at i:9172991 original size:302 final size:300
Alignment explanation
Indices: 9172438--9173176 Score: 918
Period size: 302 Copynumber: 2.4 Consensus size: 300
9172428 TTAACTTCAC
* * *
9172438 AGCGAAAGATATTGGACTAGAGACAACACAAGTTCAGCTTCACAACGAAGGGATAGCTGGTTGTC
1 AGCGAAAGATATTGGACTAGAGACAACACAAGTTCAACTTCACAACAAAGGGAGAGCTGGTTGTC
* *
9172503 AACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACATCGAAGGATGTTAGACTCGGGAC
66 AACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACATCGAAGGATATTAGACTCGAGAC
*
9172568 AACACAAGTTCAACTTCACAACGAAGGGGGGTGGTCAACAAACAATTTCCCAATTTCAGAGTCAA
131 -ACACAAGTTCAACTTCACAACGAAGGGGGGTGGTCAACAAACAATTTCCCAATTTCAGAGCCAA
9172633 TTTCAACTTCACAACGAAGGATATTGGACTCAAGACAACACAAGTTCAACTTCACAACGAAGGGA
195 TTTCAACTTCACAACGAAGGATATTGGACTCAAGACAACACAAGTTCAACTTCACAACGAA-GGA
9172698 CGGCTGGTTGTCAACAAACAATCTCCCAATTTCAGAGCAAAT
259 CGGCTGGTTGTCAACAAACAATCTCCCAATTTCAGAGCAAAT
* * *
9172740 AGCGAAGGATATTGGACTCGAGACGACACAAGTTCAACTTCACAACAAAGGGACGA-CTGGTTGT
1 AGCGAAAGATATTGGACTAGAGACAACACAAGTTCAACTTCACAACAAAGGGA-GAGCTGGTTGT
* * *
9172804 CAACAAACAATTTCCCAATTTCAGGGTCAATTTCAACTTCACATCGAAGGATATTGGACTCGAGA
65 CAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACATCGAAGGATATTAGACTCGAGA
* *
9172869 C-CACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAATAATTTCCCAATTTCAGA
130 CACACAAGTTCAACTTCACAACGAA-GG--GG--GGTGGTCAACAAACAATTTCCCAATTTCAGA
* * *
9172933 GCCAATTTCAACTTCACAGCG-AGGATATT-GACTCGAGACGACACAAGTTC-ACTTCACAACGA
190 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCAAGACAACACAAGTTCAACTTCACAACGA
* *
9172995 AGGACGGCTGGTTGTCAACAAATAATTTCCCAATTTCAG-GTCAATTTCAACTT
255 AGGACGGCTGGTTGTCAACAAACAATCTCCCAATTTCAGAG-C-A----AA--T
* * * * * * *
9173048 CACATCGAATGATATTAGACTCA-AGACAACACAAGCTCAACTTCACAGCGAAGGG-GCAGTTGG
1 ---AGCGAAAGATATTGGACT-AGAGACAACACAAGTTCAACTTCACAACAAAGGGAG-AGCTGG
* * * * * ** * *
9173111 TTGTCAACAAATAATTTTCCAGTTCCAGAGACAATTTCAACTTCACGGCGGAGGATATTGGACTC
61 TTGTCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACATCGAAGGATATTAGACTC
9173176 G
126 G
9173177 GAACAATACA
Statistics
Matches: 380, Mismatches: 37, Indels: 31
0.85 0.08 0.07
Matches are distributed among these distances:
300 24 0.06
301 39 0.10
302 131 0.34
303 22 0.06
304 8 0.02
305 48 0.13
306 2 0.01
308 1 0.00
309 1 0.00
310 1 0.00
311 103 0.27
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (300 bp):
AGCGAAAGATATTGGACTAGAGACAACACAAGTTCAACTTCACAACAAAGGGAGAGCTGGTTGTC
AACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACATCGAAGGATATTAGACTCGAGAC
ACACAAGTTCAACTTCACAACGAAGGGGGGTGGTCAACAAACAATTTCCCAATTTCAGAGCCAAT
TTCAACTTCACAACGAAGGATATTGGACTCAAGACAACACAAGTTCAACTTCACAACGAAGGACG
GCTGGTTGTCAACAAACAATCTCCCAATTTCAGAGCAAAT
Found at i:9173040 original size:406 final size:409
Alignment explanation
Indices: 9172353--9173121 Score: 1149
Period size: 406 Copynumber: 1.9 Consensus size: 409
9172343 ATTCGAGATA
* * * * *
9172353 ACACAAGTTCAACTTCACAACGAAGGGATGACTGGTTGTCAACAAACCACTTTTCAGTTTCATTC
1 ACACAAGTTCAACTTCACAACAAAGGGACGACTGGTTGTCAACAAACCAATTTCCAG-AT-ATTC
* *
9172418 AGAGCCAATTTTAACTTCACAGCGAAAGATATTGGACTAGAGACAACACAAGTTCAGCTTCACAA
64 AGAGCCAATTTCAACTTCACAGCGAAAGATATTGGACTAGAGAC-ACACAAGTTCAACTTCACAA
* *
9172483 CGAAGGGATAGCTGGTTGTCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACATCG
128 CGAAGGGACAGCTGGTTGTCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCG
* *
9172548 AAGGATGTTAGACTCGGGACAACACAAGTTCAACTTCACAACGAAGGGGGGTGGTCAACAAACAA
193 AAGGATATTAGACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGGGGTGGTCAACAAACAA
* *
9172613 TTTCCCAATTTCAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCAAGACAACACAAGT
258 TTTCCCAATTTCAGAGTCAATTTCAACTTCACAACGAAGGATATTAGACTCAAGACAACACAAGC
*
9172678 TCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATCTCCCAATTTCAGAGCAAATAGC
323 TCAACTTCACAACGAAGGGACAGCTGGTTGTCAACAAACAATCTCCCAATTTCAGAGCAAATAGC
9172743 GAAGGATATTGGACTCGAGACG
388 GAAGGATATTGGACTCGAGACG
9172765 ACACAAGTTCAACTTCACAACAAAGGGACGACTGGTTGTCAACAAA-CAATTTCCCA-AT-TTCA
1 ACACAAGTTCAACTTCACAACAAAGGGACGACTGGTTGTCAACAAACCAATTT-CCAGATATTCA
* * * * *
9172827 GGGTCAATTTCAACTTCACATCGAAGGATATTGGACTCGAGAC-CACAAGTTCAACTTCACAACG
65 GAGCCAATTTCAACTTCACAGCGAAAGATATTGGACTAGAGACACACAAGTTCAACTTCACAACG
* *
9172891 AAGGGACGGCTGGTTGTCAACAAATAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCG-A
130 AAGGGACAGCTGGTTGTCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAA
* * *
9172955 GGATATT-GACTCGAGACGACACAAGTTC-ACTTCACAACGAAGGACGGCTGGTTGTCAACAAAT
195 GGATATTAGACTCGAGACAACACAAGTTCAACTTCACAACGAAGG--GG--GGTGGTCAACAAAC
* *
9173018 AATTTCCCAATTTCAG-GTCAATTTCAACTTCACATCGAATGATATTAGACTCAAGACAACACAA
256 AATTTCCCAATTTCAGAGTCAATTTCAACTTCACAACGAAGGATATTAGACTCAAGACAACACAA
* * *
9173082 GCTCAACTTCACAGCGAAGGGGCAGTTGGTTGTCAACAAA
321 GCTCAACTTCACAACGAAGGGACAGCTGGTTGTCAACAAA
9173122 TAATTTTCCA
Statistics
Matches: 323, Mismatches: 29, Indels: 16
0.88 0.08 0.04
Matches are distributed among these distances:
403 15 0.05
404 19 0.06
405 9 0.03
406 159 0.49
407 28 0.09
408 41 0.13
410 1 0.00
411 5 0.02
412 46 0.14
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.23
Consensus pattern (409 bp):
ACACAAGTTCAACTTCACAACAAAGGGACGACTGGTTGTCAACAAACCAATTTCCAGATATTCAG
AGCCAATTTCAACTTCACAGCGAAAGATATTGGACTAGAGACACACAAGTTCAACTTCACAACGA
AGGGACAGCTGGTTGTCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAG
GATATTAGACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGGGGTGGTCAACAAACAATTT
CCCAATTTCAGAGTCAATTTCAACTTCACAACGAAGGATATTAGACTCAAGACAACACAAGCTCA
ACTTCACAACGAAGGGACAGCTGGTTGTCAACAAACAATCTCCCAATTTCAGAGCAAATAGCGAA
GGATATTGGACTCGAGACG
Found at i:9173706 original size:35 final size:35
Alignment explanation
Indices: 9173660--9173731 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 35
9173650 CCAAAAAAGA
9173660 AGAGTTAGATTAGGACTCAAATACTAGTCTAAAAT
1 AGAGTTAGATTAGGACTCAAATACTAGTCTAAAAT
* *
9173695 AGAGTTGGATTAGGACTCAAGTACTAGTCTAAAAT
1 AGAGTTAGATTAGGACTCAAATACTAGTCTAAAAT
9173730 AG
1 AG
9173732 GGTTTTTTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.40, C:0.11, G:0.21, T:0.28
Consensus pattern (35 bp):
AGAGTTAGATTAGGACTCAAATACTAGTCTAAAAT
Found at i:9174200 original size:2 final size:2
Alignment explanation
Indices: 9174189--9174221 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
9174179 AATTTTTTAC
*
9174189 TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9174222 TTCTTTAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
TA
Found at i:9174647 original size:34 final size:38
Alignment explanation
Indices: 9174600--9174673 Score: 95
Period size: 35 Copynumber: 2.1 Consensus size: 38
9174590 AGTGAGAGGG
9174600 TAGCTTTTCTA-TTTTTAAATA-TTTG-T-TATATATA
1 TAGCTTTTCTATTTTTTAAATACTTTGATGTATATATA
*
9174634 TAGCTTATT-TATTTTTTTAATACTTTGATGTATATATA
1 TAGCTT-TTCTATTTTTTAAATACTTTGATGTATATATA
9174672 TA
1 TA
9174674 TATATTCCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
34 8 0.24
35 11 0.32
36 4 0.12
37 1 0.03
38 10 0.29
ACGTcount: A:0.30, C:0.05, G:0.07, T:0.58
Consensus pattern (38 bp):
TAGCTTTTCTATTTTTTAAATACTTTGATGTATATATA
Found at i:9180446 original size:30 final size:30
Alignment explanation
Indices: 9180412--9180469 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
9180402 ATTTATCTCG
* * *
9180412 AGGACTAAATTGAAGTTCTAATTAAATTTA
1 AGGACCAAAGTGAAATTCTAATTAAATTTA
* *
9180442 AGGACCAAAGTGAAATTTTGATTAAATT
1 AGGACCAAAGTGAAATTCTAATTAAATT
9180470 CGAATCCAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.43, C:0.07, G:0.16, T:0.34
Consensus pattern (30 bp):
AGGACCAAAGTGAAATTCTAATTAAATTTA
Found at i:9187908 original size:22 final size:22
Alignment explanation
Indices: 9187876--9187961 Score: 82
Period size: 22 Copynumber: 3.9 Consensus size: 22
9187866 GCATCATATA
*
9187876 ACTAAACTGCCTTAGCACTGAT
1 ACTAAAGTGCCTTAGCACTGAT
**
9187898 ACTAAAGTGCCCCAGCACTGAT
1 ACTAAAGTGCCTTAGCACTGAT
* * * *
9187920 ACAGAAAGTGCATTAACATTGAT
1 AC-TAAAGTGCCTTAGCACTGAT
* *
9187943 ACTAAAGTACCTTATCACT
1 ACTAAAGTGCCTTAGCACT
9187962 ATTGGAGATA
Statistics
Matches: 49, Mismatches: 14, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
22 33 0.67
23 16 0.33
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (22 bp):
ACTAAAGTGCCTTAGCACTGAT
Found at i:9202138 original size:132 final size:132
Alignment explanation
Indices: 9201901--9202164 Score: 528
Period size: 132 Copynumber: 2.0 Consensus size: 132
9201891 ATTTAAAAGT
9201901 GTGAAAATTTTGTGCTAAAAAAGCTATGAAAAAGATAATGAAAACTAGATAAAGATGGCAGAGAT
1 GTGAAAATTTTGTGCTAAAAAAGCTATGAAAAAGATAATGAAAACTAGATAAAGATGGCAGAGAT
9201966 TGCAGCTAACATCAATGTAGCATTGGATTGATGGAACACCAGATAATGTTATTAAAAAGTCACTC
66 TGCAGCTAACATCAATGTAGCATTGGATTGATGGAACACCAGATAATGTTATTAAAAAGTCACTC
9202031 AC
131 AC
9202033 GTGAAAATTTTGTGCTAAAAAAGCTATGAAAAAGATAATGAAAACTAGATAAAGATGGCAGAGAT
1 GTGAAAATTTTGTGCTAAAAAAGCTATGAAAAAGATAATGAAAACTAGATAAAGATGGCAGAGAT
9202098 TGCAGCTAACATCAATGTAGCATTGGATTGATGGAACACCAGATAATGTTATTAAAAAGTCACTC
66 TGCAGCTAACATCAATGTAGCATTGGATTGATGGAACACCAGATAATGTTATTAAAAAGTCACTC
9202163 AC
131 AC
9202165 AAATTTAGTT
Statistics
Matches: 132, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
132 132 1.00
ACGTcount: A:0.43, C:0.12, G:0.20, T:0.25
Consensus pattern (132 bp):
GTGAAAATTTTGTGCTAAAAAAGCTATGAAAAAGATAATGAAAACTAGATAAAGATGGCAGAGAT
TGCAGCTAACATCAATGTAGCATTGGATTGATGGAACACCAGATAATGTTATTAAAAAGTCACTC
AC
Found at i:9204584 original size:157 final size:156
Alignment explanation
Indices: 9204298--9204598 Score: 593
Period size: 157 Copynumber: 1.9 Consensus size: 156
9204288 GTAAGTGTCA
9204298 CTATTGCAACATTAGTGATTACGAGAGCAACGTTTCAGTATAGGAAGATCTAGCTGACTGATTGT
1 CTATTGCAACATTAGTGATTACGAGAGCAACGTTTCAGTATAGGAAGATCTAGCTGACTGATTGT
9204363 TGTAGCATACTTTGTAAATTTGCATAAGTAGGTATAATGATATAGAAATGTTGTGAGTTTCTGGG
66 TGTAGCATACTTTGTAAATTTGCATAAGTAGGTATAATGATATAGAAATGTTGTGAGTTTCTGGG
9204428 TGGAGCAATCCAAGAGGTGAATGACAT
131 TGGAGCAAT-CAAGAGGTGAATGACAT
9204455 CTATTGCAACATTAGTGATTACGAGAGCAACGTTTCAGTATAGGAAGATCTAGCTGACTGATTGT
1 CTATTGCAACATTAGTGATTACGAGAGCAACGTTTCAGTATAGGAAGATCTAGCTGACTGATTGT
9204520 TGTAGCATACTTTGTAAATTTGCATAAGTAGGTATAATGATATAGAAATGTTGTGAGTTTCTGGG
66 TGTAGCATACTTTGTAAATTTGCATAAGTAGGTATAATGATATAGAAATGTTGTGAGTTTCTGGG
9204585 TGGAGCAATCAAGA
131 TGGAGCAATCAAGA
9204599 AAGGAAAACC
Statistics
Matches: 144, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
156 5 0.03
157 139 0.97
ACGTcount: A:0.32, C:0.11, G:0.25, T:0.32
Consensus pattern (156 bp):
CTATTGCAACATTAGTGATTACGAGAGCAACGTTTCAGTATAGGAAGATCTAGCTGACTGATTGT
TGTAGCATACTTTGTAAATTTGCATAAGTAGGTATAATGATATAGAAATGTTGTGAGTTTCTGGG
TGGAGCAATCAAGAGGTGAATGACAT
Found at i:9215293 original size:36 final size:36
Alignment explanation
Indices: 9215243--9215318 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
9215233 GTTATAGCAA
*
9215243 AAAAATCGTCTTTATTCGAATTTTGCCAAAAATAGC
1 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
9215279 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
1 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
9215315 AAAA
1 AAAA
9215319 TCCCGAAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (36 bp):
AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
Found at i:9227502 original size:24 final size:24
Alignment explanation
Indices: 9227466--9227519 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
9227456 TGGCGAAGCA
* **
9227466 AGTGACTTCCGATGGTTATGGTTC
1 AGTGAATTCCGATGGTTAAAGTTC
*
9227490 AGTGAATTTCGATGGTTAAAGTTC
1 AGTGAATTCCGATGGTTAAAGTTC
9227514 AGTGAA
1 AGTGAA
9227520 GGAATCATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.26, C:0.11, G:0.28, T:0.35
Consensus pattern (24 bp):
AGTGAATTCCGATGGTTAAAGTTC
Found at i:9232885 original size:99 final size:98
Alignment explanation
Indices: 9232702--9232885 Score: 208
Period size: 99 Copynumber: 1.9 Consensus size: 98
9232692 AAGAAGGTGC
* * * *
9232702 AACCTATAATGTTATCTAGGAAACTAGGTTTGTTTAACATTTTCATAATATAAAGGGTTTTAGCC
1 AACCTATAATGTTATCCAGGAAACCAAGTTTGTTTAACATTTTCATAATATAAAGGGTTCTAGCC
* **
9232767 TCTAACATAATAATTTAACATAACAAAAAAAGA
66 TATAACATAATAAAATAACATAACAAAAAAAGA
* *** * * *
9232800 AACCTATAATGTTATCCAGGAAACCAAGTTTTTTTTTTATTTTTCATAATGTACATGGTTCTAGC
1 AACCTATAATGTTATCCAGGAAACCAAGTTTGTTTAACA-TTTTCATAATATAAAGGGTTCTAGC
*
9232865 CTATAACCAT-TTAAAATAACA
65 CTATAA-CATAATAAAATAACA
9232886 ATAAGGTGCA
Statistics
Matches: 69, Mismatches: 15, Indels: 3
0.79 0.17 0.03
Matches are distributed among these distances:
98 32 0.46
99 34 0.49
100 3 0.04
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.36
Consensus pattern (98 bp):
AACCTATAATGTTATCCAGGAAACCAAGTTTGTTTAACATTTTCATAATATAAAGGGTTCTAGCC
TATAACATAATAAAATAACATAACAAAAAAAGA
Found at i:9233974 original size:21 final size:21
Alignment explanation
Indices: 9233932--9233974 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
9233922 GAATGGTATG
* *
9233932 TTATTGTTTTCTTTACATTTA
1 TTATTCTTTTCTTTACAATTA
9233953 TTATTCTTTTCTTGT-CAATTA
1 TTATTCTTTTCTT-TACAATTA
9233974 T
1 T
9233975 ATTAGAACGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.19, C:0.12, G:0.05, T:0.65
Consensus pattern (21 bp):
TTATTCTTTTCTTTACAATTA
Found at i:9234370 original size:33 final size:33
Alignment explanation
Indices: 9234331--9234449 Score: 141
Period size: 33 Copynumber: 3.6 Consensus size: 33
9234321 ATGAATTTAC
* *
9234331 CGATGAGTTGTTGATTGATTGATTGAGATTTTT
1 CGATGAGTTGTTGGTTGATTGGTTGAGATTTTT
** * ** * *
9234364 TAATGAGTTGTAGGTTGATTGGTCAAGAATTTC
1 CGATGAGTTGTTGGTTGATTGGTTGAGATTTTT
9234397 CGATGAG-TGATTGGTTGATTGGTTGAGATTTTT
1 CGATGAGTTG-TTGGTTGATTGGTTGAGATTTTT
9234430 CGATGAGTTGTTGGTTGATT
1 CGATGAGTTGTTGGTTGATT
9234450 TCTCTATTTT
Statistics
Matches: 68, Mismatches: 16, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
32 2 0.03
33 64 0.94
34 2 0.03
ACGTcount: A:0.21, C:0.04, G:0.30, T:0.45
Consensus pattern (33 bp):
CGATGAGTTGTTGGTTGATTGGTTGAGATTTTT
Found at i:9234436 original size:66 final size:67
Alignment explanation
Indices: 9234323--9234449 Score: 186
Period size: 66 Copynumber: 1.9 Consensus size: 67
9234313 AGATTTGAAT
*
9234323 GAATTTACCGATGAGTTGTTGATTGATTGATTGAGATTTTTTAATGAGTTGTAGGTTGATTGGTC
1 GAATTTACCGATGAGTTGTTGATTGATTGATTGAGATTTTTCAATGAGTTGTAGGTTGATTGGTC
9234388 AA
66 AA
* * * *
9234390 GAATTT-CCGATGAG-TGATTGGTTGATTGGTTGAGATTTTTCGATGAGTTGTTGGTTGATT
1 GAATTTACCGATGAGTTG-TTGATTGATTGATTGAGATTTTTCAATGAGTTGTAGGTTGATT
9234450 TCTCTATTTT
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
65 2 0.04
66 46 0.85
67 6 0.11
ACGTcount: A:0.22, C:0.05, G:0.29, T:0.44
Consensus pattern (67 bp):
GAATTTACCGATGAGTTGTTGATTGATTGATTGAGATTTTTCAATGAGTTGTAGGTTGATTGGTC
AA
Found at i:9244409 original size:640 final size:645
Alignment explanation
Indices: 9243183--9244468 Score: 2501
Period size: 640 Copynumber: 2.0 Consensus size: 645
9243173 CAAAATGAAA
9243183 AAAAGTACGAAAGAAAATGTCGCAAACAAAAATTAGGCGATGTGGGTTCTACAAACAAAAGGGAC
1 AAAAGTACGAAAGAAAATGTCGCAAACAAAAATTAGGCGATGTGGGTTCTACAAACAAAAGGGAC
9243248 ATAGCAAAGTTACTTGTCCATGATTGCAACTAGGTATGCCAACAAGTTCACCACCAACCCAGCCT
66 ATAGCAAAGTTACTTGTCCATGATTGCAACTA-GTATGCCAACAAGTTCACCACCAACCCAGCCT
*
9243313 AATTTCTTTGAGGATGAGCACATACAAAATTCTTGGAGTAACGAAAATGATGACAATTATGTGAG
130 AATTTCTTTGAGGATGAGCACACACAAAATTCTTGGAGTAACGAAAATGATGACAATTATGTGAG
9243378 TCAATCAGTATATATGTTTTACCATAATGTATACCAATTTTACTCTTCCTTTCTAATTATTTCAA
195 TCAATCAGTATATATGTTTTACCATAATGTATACCAATTTTACTCTTCCTTTCTAATTATTTCAA
*
9243443 CATTATGTCTTAGGACAACGACGGACGTTGGAGTACTGCAATTTCTGATTTACATATAGGGCAAC
260 CATTATGTCTTAGGACAACGACGGACGTTGGAGTACTGCAAGTTCTGATTTACATATAGGGCAAC
9243508 GATAATAACATCTGGTATGTTAGATTTACATGTGCAAAAAATTTAGTGATGGGCTTTCTAAACTA
325 GATAATAACATCTGGTATGTTAGATTTACATGTGCAAAAAATTTAGTGATGGGCTTTCTAAACTA
9243573 ACCTAAATTAGGCATTCACATAGATAATAACCCTTTTTTAATTTTATCATGGCAAACCAGATCGA
390 ACCTAAATTAGGCATTCACATAGATAATAACCCTTTTTTAATTTTATCATGGCAAACCAGATCGA
9243638 TTAATATTCTCATACGATCTCATTCGCCAACAACCTCTATTTGAATTGTCAATCCATTATCACAT
455 TTAATATTCTCATACGATCTCATTCGCCAACAACCTCTATTTGAATTGTCAATCCATTATCACAT
9243703 CATTCATTTTGAAATCGTACTTAAATTTTATAAATATATAAATTATGTGACGCCTTACCTCATTC
520 CATTCATTTTGAAATCGTACTTAAATTTTATAAATATATAAATTATGTGACGCCTTACCTCATTC
9243768 TTTCTAGTCCTATTCAATTTCGCTTGCATCCTCCTTATGACATGAATGTTGCAATCATTTT
585 TTTCTAGTCCTATTCAATTTCGCTTGCATCCTCCTTATGACATGAATGTTGCAATCATTTT
9243829 AAAAGTACGAAAGAAAATGTCGCAAACAAAAATTAGGCGATGTGGGTTCTACAAACAAAAGGGAC
1 AAAAGTACGAAAGAAAATGTCGCAAACAAAAATTAGGCGATGTGGGTTCTACAAACAAAAGGGAC
9243894 ATAGCAAAGTTACTTGTCCATGATTGCAACTA-TATGCCAACAAGTTCACCACCAACCCAGCCTA
66 ATAGCAAAGTTACTTGTCCATGATTGCAACTAGTATGCCAACAAGTTCACCACCAACCCAGCCTA
9243958 ATTTCTTTGAGGA-GA-CAC-CAC-AAATTCTTGGAGTAACGAAAATGATGACAATTATGTGAGT
131 ATTTCTTTGAGGATGAGCACACACAAAATTCTTGGAGTAACGAAAATGATGACAATTATGTGAGT
9244019 CAATCAGTATATATGTTTTACCATAATGTATACCAATTTTACTCTTCCTTTCTAATTATTTCAAC
196 CAATCAGTATATATGTTTTACCATAATGTATACCAATTTTACTCTTCCTTTCTAATTATTTCAAC
9244084 ATTATGTCTTAGGACAACGACGGACGTTGGAGTACTGCAAGTTCTGATTTACATATAGGGCAACG
261 ATTATGTCTTAGGACAACGACGGACGTTGGAGTACTGCAAGTTCTGATTTACATATAGGGCAACG
*
9244149 ATAATAACATCTGGTATGTTAGATTTACATGTGCAAGAAATTTAGTGATGGGCTTTCTAAACTAA
326 ATAATAACATCTGGTATGTTAGATTTACATGTGCAAAAAATTTAGTGATGGGCTTTCTAAACTAA
9244214 CCTAAATTAGGCATTCACATAGATAATAACCCTTTTTTAATTTTATCATGGCAAACCAGATCGAT
391 CCTAAATTAGGCATTCACATAGATAATAACCCTTTTTTAATTTTATCATGGCAAACCAGATCGAT
9244279 TAATATTCTCATACGATCTCATTCGCCAACAACCTCTATTTGAATTGTCAATCCATTATCACATC
456 TAATATTCTCATACGATCTCATTCGCCAACAACCTCTATTTGAATTGTCAATCCATTATCACATC
9244344 ATTCATTTTGAAATCGTACTTAAATTTTATAAATATATAAATTATGTGACGCCTTACCTCATTCT
521 ATTCATTTTGAAATCGTACTTAAATTTTATAAATATATAAATTATGTGACGCCTTACCTCATTCT
9244409 TTCTAGTCCTATTCAATTTCGCTTGCATCCTCCTTATGACATGAATGTTGCAATCATTTT
586 TTCTAGTCCTATTCAATTTCGCTTGCATCCTCCTTATGACATGAATGTTGCAATCATTTT
9244469 TGTACAATAT
Statistics
Matches: 637, Mismatches: 3, Indels: 6
0.99 0.00 0.01
Matches are distributed among these distances:
640 488 0.77
641 2 0.00
642 3 0.00
643 2 0.00
644 45 0.07
646 97 0.15
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.33
Consensus pattern (645 bp):
AAAAGTACGAAAGAAAATGTCGCAAACAAAAATTAGGCGATGTGGGTTCTACAAACAAAAGGGAC
ATAGCAAAGTTACTTGTCCATGATTGCAACTAGTATGCCAACAAGTTCACCACCAACCCAGCCTA
ATTTCTTTGAGGATGAGCACACACAAAATTCTTGGAGTAACGAAAATGATGACAATTATGTGAGT
CAATCAGTATATATGTTTTACCATAATGTATACCAATTTTACTCTTCCTTTCTAATTATTTCAAC
ATTATGTCTTAGGACAACGACGGACGTTGGAGTACTGCAAGTTCTGATTTACATATAGGGCAACG
ATAATAACATCTGGTATGTTAGATTTACATGTGCAAAAAATTTAGTGATGGGCTTTCTAAACTAA
CCTAAATTAGGCATTCACATAGATAATAACCCTTTTTTAATTTTATCATGGCAAACCAGATCGAT
TAATATTCTCATACGATCTCATTCGCCAACAACCTCTATTTGAATTGTCAATCCATTATCACATC
ATTCATTTTGAAATCGTACTTAAATTTTATAAATATATAAATTATGTGACGCCTTACCTCATTCT
TTCTAGTCCTATTCAATTTCGCTTGCATCCTCCTTATGACATGAATGTTGCAATCATTTT
Found at i:9245689 original size:23 final size:22
Alignment explanation
Indices: 9245639--9245689 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 22
9245629 CCGACTAGAC
*
9245639 CGAGTCAAGTTGTGAATCAAAG
1 CGAGTCAAGTTGTAAATCAAAG
* *
9245661 CTGAGTCGAGTTGTAAATCAGAG
1 C-GAGTCAAGTTGTAAATCAAAG
9245684 TCGAGT
1 -CGAGT
9245690 TATGAACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
22 1 0.04
23 22 0.92
24 1 0.04
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.25
Consensus pattern (22 bp):
CGAGTCAAGTTGTAAATCAAAG
Found at i:9251936 original size:19 final size:20
Alignment explanation
Indices: 9251893--9251938 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
9251883 TACTATGCTG
* *
9251893 GAAATTTATGTTAGAGTGTT
1 GAAATTGATGTTAGAATGTT
9251913 GAAATTGATGTTAGAATG-T
1 GAAATTGATGTTAGAATGTT
9251932 GAAATTG
1 GAAATTG
9251939 GGTCATTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 8 0.33
20 16 0.67
ACGTcount: A:0.35, C:0.00, G:0.26, T:0.39
Consensus pattern (20 bp):
GAAATTGATGTTAGAATGTT
Found at i:9254220 original size:21 final size:19
Alignment explanation
Indices: 9254185--9254238 Score: 56
Period size: 19 Copynumber: 2.7 Consensus size: 19
9254175 GTGTTGCATC
*
9254185 TAAAAACATCCAATG-AAGT
1 TAAAAACAT-AAATGCAAGT
9254204 TCAACAACACATAAATGCAAGT
1 T-AA-AA-ACATAAATGCAAGT
9254226 TAAAAACATAAAT
1 TAAAAACATAAAT
9254239 CATAATAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
19 9 0.30
20 4 0.13
21 8 0.27
22 9 0.30
ACGTcount: A:0.56, C:0.17, G:0.07, T:0.20
Consensus pattern (19 bp):
TAAAAACATAAATGCAAGT
Found at i:9268832 original size:183 final size:184
Alignment explanation
Indices: 9268516--9268885 Score: 715
Period size: 183 Copynumber: 2.0 Consensus size: 184
9268506 ATTCCAGTTC
9268516 GGACAGATTACTTGATGGATAAATATATTGAGTTGTACATAAAAGAGATAGTTCGACTACATGGA
1 GGACAGATTACTTGATGGATAAATATATT-AGTTGTACATAAAAGAGATAGTTCGACTACATGGA
9268581 GTGCATGTATCGATTGTATCTGACAGAGATCCAAGGTTTACATCAAGATTCTGGAATTCTTTGCG
65 GTGCATGTATCGATTGTATCTGACAGAGATCCAAGGTTTACATCAAGATTCTGGAATTCTTTGCG
9268646 TAAGGCCTTGGGTACTCGATTGAAGTTCAGCATGACTTTTCATCCATAGATAGAA
130 TAAGGCCTTGGGTACTCGATTGAAGTTCAGCATGACTTTTCATCCATAGATAGAA
*
9268701 GGACATATTACTTGATGGATAAATATATT-GTTGTACATAAAAGAGATAGTTCGACTACATGGAG
1 GGACAGATTACTTGATGGATAAATATATTAGTTGTACATAAAAGAGATAGTTCGACTACATGGAG
9268765 TGCATGTATCGATTGTATCTGACAGAGATCCAAGGTTTACATCAAGATTCTGGAATTCTTTGCGT
66 TGCATGTATCGATTGTATCTGACAGAGATCCAAGGTTTACATCAAGATTCTGGAATTCTTTGCGT
9268830 AAGGCCTTGGGTACTCGATTGAAGTTCAGCATGACTTTTCATCCATAGATAGAA
131 AAGGCCTTGGGTACTCGATTGAAGTTCAGCATGACTTTTCATCCATAGATAGAA
9268884 GG
1 GG
9268886 TTAATTAGAG
Statistics
Matches: 184, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
183 156 0.85
185 28 0.15
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.32
Consensus pattern (184 bp):
GGACAGATTACTTGATGGATAAATATATTAGTTGTACATAAAAGAGATAGTTCGACTACATGGAG
TGCATGTATCGATTGTATCTGACAGAGATCCAAGGTTTACATCAAGATTCTGGAATTCTTTGCGT
AAGGCCTTGGGTACTCGATTGAAGTTCAGCATGACTTTTCATCCATAGATAGAA
Found at i:9271368 original size:54 final size:54
Alignment explanation
Indices: 9271309--9271419 Score: 134
Period size: 54 Copynumber: 2.1 Consensus size: 54
9271299 CGAAGTGCCA
* *
9271309 AAATGGAAATTCACAAACTCATTATGAATTCAATGGAG-TGCACACCTAGTGTCG
1 AAATGGAAATTCACAAACACATTATGAATACAATGG-GTTGCACACCTAGTGTCG
** * * **
9271363 AAATGGTTATTCATAAACACATTATGAATACTATGGGTTGCACATTTAGTGTCG
1 AAATGGAAATTCACAAACACATTATGAATACAATGGGTTGCACACCTAGTGTCG
9271417 AAA
1 AAA
9271420 ATGTACCGTT
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
53 1 0.02
54 47 0.98
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (54 bp):
AAATGGAAATTCACAAACACATTATGAATACAATGGGTTGCACACCTAGTGTCG
Found at i:9279328 original size:107 final size:108
Alignment explanation
Indices: 9279142--9279356 Score: 423
Period size: 107 Copynumber: 2.0 Consensus size: 108
9279132 GAAGTATATG
9279142 ACCTGCAGTTCTCTTGTAGTGCTTCTTGCTGGATGAGGCTCATGCTGGACTACATGGCTCGTTCG
1 ACCTGCAGTTCTCTTGTAGTGCTTCTTGCTGGATGAGGCTCATGCTGGACTACATGGCTCGTTCG
9279207 TAGGAGTTGGTTGTGCTGGA-TGGTGATGTACTAGTAGATGTT
66 TAGGAGTTGGTTGTGCTGGACTGGTGATGTACTAGTAGATGTT
9279249 ACCTGCAGTTCTCTTGTAGTGCTTCTTGCTGGATGAGGCTCATGCTGGACTACATGGCTCGTTCG
1 ACCTGCAGTTCTCTTGTAGTGCTTCTTGCTGGATGAGGCTCATGCTGGACTACATGGCTCGTTCG
9279314 TAGGAGTTGGTTGTGCTGGACTGGTGATGTACTAGTAGATGTT
66 TAGGAGTTGGTTGTGCTGGACTGGTGATGTACTAGTAGATGTT
9279357 GTTGGGACTG
Statistics
Matches: 107, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
107 85 0.79
108 22 0.21
ACGTcount: A:0.16, C:0.17, G:0.32, T:0.35
Consensus pattern (108 bp):
ACCTGCAGTTCTCTTGTAGTGCTTCTTGCTGGATGAGGCTCATGCTGGACTACATGGCTCGTTCG
TAGGAGTTGGTTGTGCTGGACTGGTGATGTACTAGTAGATGTT
Found at i:9284987 original size:92 final size:92
Alignment explanation
Indices: 9284830--9285014 Score: 370
Period size: 92 Copynumber: 2.0 Consensus size: 92
9284820 ATTGTTCATG
9284830 TGTTCTCCCCCAAACTTATCATCTTGGTCGACTTGTTTTCCACTCTTTAGCGTAAGTACATTGCA
1 TGTTCTCCCCCAAACTTATCATCTTGGTCGACTTGTTTTCCACTCTTTAGCGTAAGTACATTGCA
9284895 TTGCTCATTCCCATGATGCTTAGTGAC
66 TTGCTCATTCCCATGATGCTTAGTGAC
9284922 TGTTCTCCCCCAAACTTATCATCTTGGTCGACTTGTTTTCCACTCTTTAGCGTAAGTACATTGCA
1 TGTTCTCCCCCAAACTTATCATCTTGGTCGACTTGTTTTCCACTCTTTAGCGTAAGTACATTGCA
9284987 TTGCTCATTCCCATGATGCTTAGTGAC
66 TTGCTCATTCCCATGATGCTTAGTGAC
9285014 T
1 T
9285015 TCAGTATCAC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
92 93 1.00
ACGTcount: A:0.19, C:0.27, G:0.15, T:0.38
Consensus pattern (92 bp):
TGTTCTCCCCCAAACTTATCATCTTGGTCGACTTGTTTTCCACTCTTTAGCGTAAGTACATTGCA
TTGCTCATTCCCATGATGCTTAGTGAC
Found at i:9287351 original size:24 final size:20
Alignment explanation
Indices: 9287300--9287340 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
9287290 TACCAAAACC
9287300 CAAGGCTATCTCTCGATGCT
1 CAAGGCTATCTCTCGATGCT
9287320 CAAGGCTATCTCTCGATGCT
1 CAAGGCTATCTCTCGATGCT
9287340 C
1 C
9287341 TTACAGTGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.20, C:0.32, G:0.20, T:0.29
Consensus pattern (20 bp):
CAAGGCTATCTCTCGATGCT
Found at i:9288359 original size:39 final size:38
Alignment explanation
Indices: 9288316--9288428 Score: 120
Period size: 39 Copynumber: 2.9 Consensus size: 38
9288306 TATTATTAGG
* *
9288316 TGAGTGTAATAATGGTTG-TAATGCCTAAAGTGAGGATAA
1 TGAGTGTAATAA-GG-AGATAATGCCTAAGGTGAGGATAA
* * * *
9288355 TGAGTGTCATAAGGGCGATAATGCCTAAGGTGAGGTTGA
1 TGAGTGTAATAA-GGAGATAATGCCTAAGGTGAGGATAA
*
9288394 TGAGTGCAATAAAGGAGATAATGCCTAAGGTGAGG
1 TGAGTGTAAT-AAGGAGATAATGCCTAAGGTGAGG
9288429 CTGATGATTG
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.02
39 60 0.95
40 2 0.03
ACGTcount: A:0.34, C:0.08, G:0.33, T:0.26
Consensus pattern (38 bp):
TGAGTGTAATAAGGAGATAATGCCTAAGGTGAGGATAA
Found at i:9288434 original size:39 final size:39
Alignment explanation
Indices: 9288334--9288453 Score: 152
Period size: 39 Copynumber: 3.1 Consensus size: 39
9288324 ATAATGGTTG
* * * *
9288334 TAATGCCTAAAGTGAGGATAATGAGTGTC-ATAAGGGCGA
1 TAATGCCTAAGGTGAGGATGATGAGTG-CAATAAAGGAGA
*
9288373 TAATGCCTAAGGTGAGGTTGATGAGTGCAATAAAGGAGA
1 TAATGCCTAAGGTGAGGATGATGAGTGCAATAAAGGAGA
* * *
9288412 TAATGCCTAAGGTGAGGCTGATGATTGCAATAAAGGTGA
1 TAATGCCTAAGGTGAGGATGATGAGTGCAATAAAGGAGA
9288451 TAA
1 TAA
9288454 CACCAAATAT
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
38 1 0.01
39 71 0.99
ACGTcount: A:0.36, C:0.09, G:0.31, T:0.24
Consensus pattern (39 bp):
TAATGCCTAAGGTGAGGATGATGAGTGCAATAAAGGAGA
Found at i:9288510 original size:39 final size:39
Alignment explanation
Indices: 9288334--9288507 Score: 138
Period size: 39 Copynumber: 4.4 Consensus size: 39
9288324 ATAATGGTTG
* * *
9288334 TAATGCCTAAA-GTGAGGATAATGAGTGTC-ATAAGGGCGA
1 TAATGCC-AAAGGTGAGGATGATGAGT-TCAATAAAGGTGA
* * * *
9288373 TAATGCCTAAGGTGAGGTTGATGAGTGCAATAAAGGAGA
1 TAATGCCAAAGGTGAGGATGATGAGTTCAATAAAGGTGA
* *
9288412 TAATGCCTAAGGTGAGGCTGATGA-TTGCAATAAAGGTGA
1 TAATGCCAAAGGTGAGGATGATGAGTT-CAATAAAGGTGA
** ** * * * *
9288451 TAACACCAAATATAAGGGTGATGAGTTCAATAAGGGTGG
1 TAATGCCAAAGGTGAGGATGATGAGTTCAATAAAGGTGA
9288490 TAATGCCAAAGGTTGAGG
1 TAATGCCAAAGG-TGAGG
9288508 TGAAATAAGT
Statistics
Matches: 107, Mismatches: 23, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
38 4 0.04
39 97 0.91
40 6 0.06
ACGTcount: A:0.36, C:0.10, G:0.31, T:0.24
Consensus pattern (39 bp):
TAATGCCAAAGGTGAGGATGATGAGTTCAATAAAGGTGA
Found at i:9289921 original size:42 final size:42
Alignment explanation
Indices: 9289874--9289960 Score: 147
Period size: 42 Copynumber: 2.1 Consensus size: 42
9289864 ATGCTTCTTC
* * *
9289874 CAAAATGTTAAAATAAGATAGTAGATAGAGAGGACATGAATG
1 CAAAATATTAAAACAAGATAGGAGATAGAGAGGACATGAATG
9289916 CAAAATATTAAAACAAGATAGGAGATAGAGAGGACATGAATG
1 CAAAATATTAAAACAAGATAGGAGATAGAGAGGACATGAATG
9289958 CAA
1 CAA
9289961 GATGATCAGG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.52, C:0.07, G:0.23, T:0.18
Consensus pattern (42 bp):
CAAAATATTAAAACAAGATAGGAGATAGAGAGGACATGAATG
Found at i:9294021 original size:21 final size:22
Alignment explanation
Indices: 9293995--9294072 Score: 77
Period size: 21 Copynumber: 3.4 Consensus size: 22
9293985 TTAGTAAATC
9293995 ATAAATCATAC-TTTAAATCAA
1 ATAAATCATACGTTTAAATCAA
9294016 ATAAATCATACGGTAGTTAAATCAA
1 ATAAATCATAC-GT--TTAAATCAA
* *
9294041 AGTAAATAATACATTTCAAATCAA
1 A-TAAATCATACGTTT-AAATCAA
*
9294065 AGAAATCA
1 ATAAATCA
9294073 ATCATGTGCA
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
21 11 0.23
23 8 0.17
24 8 0.17
25 11 0.23
26 9 0.19
ACGTcount: A:0.53, C:0.13, G:0.06, T:0.28
Consensus pattern (22 bp):
ATAAATCATACGTTTAAATCAA
Found at i:9295103 original size:69 final size:70
Alignment explanation
Indices: 9295017--9295158 Score: 277
Period size: 69 Copynumber: 2.0 Consensus size: 70
9295007 GATGAATTAA
9295017 CGATGGATTTTTGTCACAGGATGTCATCGGTTACATTGGTGGTGACGACGCACGCTGACGACGG-
1 CGATGGATTTTTGTCACAGGATGTCATCGGTTACATTGGTGGTGACGACGCACGCTGACGACGGC
9295081 CGAAT
66 CGAAT
9295086 CGATGGATTTTTGTCACAGGATGTCATCGGTTACATTGGTGGTGACGACGCACGCTGACGACGGC
1 CGATGGATTTTTGTCACAGGATGTCATCGGTTACATTGGTGGTGACGACGCACGCTGACGACGGC
9295151 CGAAT
66 CGAAT
9295156 CGA
1 CGA
9295159 ACAGACCGAG
Statistics
Matches: 72, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
69 64 0.89
70 8 0.11
ACGTcount: A:0.22, C:0.21, G:0.32, T:0.25
Consensus pattern (70 bp):
CGATGGATTTTTGTCACAGGATGTCATCGGTTACATTGGTGGTGACGACGCACGCTGACGACGGC
CGAAT
Found at i:9295522 original size:11 final size:11
Alignment explanation
Indices: 9295502--9295536 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
9295492 TACAAATCAA
9295502 TTAAAT-AATT
1 TTAAATAAATT
9295512 TTAAATAAATT
1 TTAAATAAATT
*
9295523 TCAAATAAATT
1 TTAAATAAATT
9295534 TTA
1 TTA
9295537 GGGTGTGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 6 0.27
11 16 0.73
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (11 bp):
TTAAATAAATT
Found at i:9302263 original size:81 final size:81
Alignment explanation
Indices: 9302027--9303246 Score: 1554
Period size: 81 Copynumber: 15.1 Consensus size: 81
9302017 AGACATTTAG
* * * * * *
9302027 TCTTTTACCCCAAAGGTATTTAACCTTTCATCTAAATGGCATGATTGACACCTTTCGGCCAAAGG
1 TCTTTTA-CTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATG
* * **
9302092 CACAGTTAGACTTTTAGA
65 CACAGCTAGGCCATTA-A
* * *
9302110 -CTTTTACTCAAAGGTATTT-ACCTTTCATCTAACTGGCATGATTGACACCTTTCTGCCAAAGGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
* ** *
9302173 ACAGTTAGGCTTTTAG
66 ACAGCTAGGCCATTAA
* * * * *
9302189 TCTTTTACTCAAAAGTATTTAACCTTTCATCTATCTGGCTTGATTGACACCTTTCTGTCAAATAC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
*
9302254 AAAGCTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* * *
9302270 TATTTTACTCAAAGGTATTTAACCTTTCATCTAACAT-GCATAATTGACACTTTTCTATCAAATG
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAAC-TGGCATAATTGACACCTTTCTGTCAAATG
***
9302334 CACAGCTAATTCATTAA
65 CACAGCTAGGCCATTAA
* *
9302351 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATATTTGACACCTTTCTATCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
*
9302416 ACAGATAGGCCATTAA
66 ACAGCTAGGCCATTAA
* * *
9302432 TCTTTTACTCAAAGGTATTTAACCTTTCAACTAACTGGCATAACTGACACATTTCTGTCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
*
9302497 ACAGCTAGGTCATTAA
66 ACAGCTAGGCCATTAA
* * *
9302513 TCTTTTACTCAAAGGTATTTAATCTTTCATCTAACTGGCATAATTTACACATTTCTGTCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
*
9302578 ACAACTAGGCCATTAA
66 ACAGCTAGGCCATTAA
** * * *
9302594 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGAAATAATTGACACCTCTCTCTCAAATAC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
* **
9302659 ACATCTATACCATTAA
66 ACAGCTAGGCCATTAA
* * * * * *
9302675 TATTTTACTCAAAGGTATTTAACCTTTCATCGAACT-ACATTATTGACACCTTTCTCTCAAATAC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
*
9302739 ACAGCCAGGCCATTAA
66 ACAGCTAGGCCATTAA
* * *
9302755 TATTTTACTCAAAGATATTTAACATTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
* *
9302820 ACAGCTAGCCCATGAA
66 ACAGCTAGGCCATTAA
** * ** *
9302836 TCTTTCGCTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGATATATTTCTATCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
*
9302901 ACAACTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* * * * * *
9302917 TCTTTTACTCAAAGGTATTTAACCTTTCATTTAACTGGCATAATTGATACTTTTCTATTAAATGA
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
* *
9302982 ACAGTTAGGTCATTAA
66 ACAGCTAGGCCATTAA
* * * * * *
9302998 TCTTTTACTC--AGGTATTTAGCCTTT-TTCAAACTGGCATAATTAACACCTTTATGTAAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
9303060 ACAGCTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* *
9303076 TCTTTCACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGATACCTTTCTGTCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
* *
9303141 ATAGATAGGCCATTAA
66 ACAGCTAGGCCATTAA
* * * *
9303157 TATTTTACTCAAAGGTATTTAACCTTTCATCTAACTAGCATAATTGACATCTTTCTGTCAAATGT
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
*
9303222 ACAACTAGGCCATTAA
66 ACAGCTAGGCCATTAA
9303238 TCTTTTACT
1 TCTTTTACT
9303247 TTAGAACTGT
Statistics
Matches: 996, Mismatches: 133, Indels: 18
0.87 0.12 0.02
Matches are distributed among these distances:
78 50 0.05
79 14 0.01
80 159 0.16
81 766 0.77
82 7 0.01
ACGTcount: A:0.31, C:0.21, G:0.11, T:0.36
Consensus pattern (81 bp):
TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
ACAGCTAGGCCATTAA
Found at i:9302913 original size:485 final size:484
Alignment explanation
Indices: 9301997--9303246 Score: 1622
Period size: 485 Copynumber: 2.6 Consensus size: 484
9301987 TATTGGCACC
* * * *
9301997 TTTCTATCAAATGAAC-CCTTA-GACATTTAGTCTTTTACCCCAAAGGTATTTAACCTTTCATCT
1 TTTCTATCAAATGAACAGC-TAGGTCA-TTAATCTTTTA-CTCAAAGGTATTTAACCTTTCATCT
* * * * * * * * **
9302060 AAATGGCATGATTGACACCTTTCGGCCAAAGGCACAGTTAGACTTTTAGA-CTTTTACTCAAAGG
63 AACTGGCATAATTAACACCTTTCTGTCAAATGCACAGCTAGGCCATTA-ATCTTTTACTCAAAGG
* * **
9302124 TATTT-ACCTTTCATCTAACTGGCATGATTGACACCTTTCTGC-CAAAGGCACAGTTAGGCTTTT
127 TATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCT-CTCAAATGCACA-TTAGGCCATT
* * * * *
9302187 AGTCTTTTACTCAAAAGTATTTAACCTTTCATCTATCTGGC-TTGATTGACACCTTTCTGTCAAA
190 AATATTTTACTCAAAGGTATTTAACCTTTCATCTAACT-ACATT-ATTGACACCTTTCTGTCAAA
* * *
9302251 TACAAAGCTAGGCCATTAATATTTTACTCAAAGGTATTTAACCTTTCATCTAACATGCATAATTG
253 TACACAGCTAGGCCATTAATATTTTACTCAAAGATATTTAACATTTCATCTAACATGCATAATTG
* ** * *
9302316 ACACTTTTCTATCAAATGCACAGCTAATTCATTAATCTTTTACTCAAAGGTATTTAACCTTTCAT
318 ACACCTTTCTATCAAATGCACAGCTAACCCATGAATCTTTCACTCAAAGGTATTTAACCTTTCAT
* *
9302381 CTAACTGGCATATTTGACACCTTTCTATCAAATGCACAGATAGGCCATTAATCTTTTACTCAAAG
383 CTAACTGGCATAATTGACACATTTCTATCAAATGCACAGATAGGCCATTAATCTTTTACTCAAAG
9302446 GTATTTAACCTTTCAACTAACTGGCATAACTGACACA
448 GTATTTAACCTTTCAACTAACTGGCATAACTGACACA
* * *
9302483 TTTCTGTCAAATGCACAGCTAGGTCATTAATCTTTTACTCAAAGGTATTTAATCTTTCATCTAAC
1 TTTCTATCAAATGAACAGCTAGGTCATTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAAC
* * *
9302548 TGGCATAATTTACACATTTCTGTCAAATGCACAACTAGGCCATTAATCTTTTACTCAAAGGTATT
66 TGGCATAATTAACACCTTTCTGTCAAATGCACAGCTAGGCCATTAATCTTTTACTCAAAGGTATT
** * * **
9302613 TAACCTTTCATCTAACTGAAATAATTGACACCTCTCTCTCAAATACACATCTATACCATTAATAT
131 TAACCTTTCATCTAACTGGCATAATTGACACCTTTCTCTCAAATGCACAT-TAGGCCATTAATAT
* *
9302678 TTTACTCAAAGGTATTTAACCTTTCATCGAACTACATTATTGACACCTTTCTCTCAAATACACAG
195 TTTACTCAAAGGTATTTAACCTTTCATCTAACTACATTATTGACACCTTTCTGTCAAATACACAG
*
9302743 CCAGGCCATTAATATTTTACTCAAAGATATTTAACATTTCATCTAAC-TGGCATAATTGACACCT
260 CTAGGCCATTAATATTTTACTCAAAGATATTTAACATTTCATCTAACAT-GCATAATTGACACCT
* * *
9302807 TTCTGTCAAATGCACAGCTAGCCCATGAATCTTTCGCTCAAAGGTATTTAACCTTTCATCTAACT
324 TTCTATCAAATGCACAGCTAACCCATGAATCTTTCACTCAAAGGTATTTAACCTTTCATCTAACT
* *
9302872 GGCATAATTGATATATTTCTATCAAATGCACA-ACTAGGCCATTAATCTTTTACTCAAAGGTATT
389 GGCATAATTGACACATTTCTATCAAATGCACAGA-TAGGCCATTAATCTTTTACTCAAAGGTATT
** * * *
9302936 TAACCTTTCATTTAACTGGCATAATTGATACT
453 TAACCTTTCAACTAACTGGCATAACTGACACA
* * * * *
9302968 TTTCTATTAAATGAACAGTTAGGTCATTAATCTTTTACTC--AGGTATTTAGCCTTT-TTCAAAC
1 TTTCTATCAAATGAACAGCTAGGTCATTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAAC
* * *
9303030 TGGCATAATTAACACCTTTATGTAAAATGCACAGCTAGGCCATTAATCTTTCACTCAAAGGTATT
66 TGGCATAATTAACACCTTTCTGTCAAATGCACAGCTAGGCCATTAATCTTTTACTCAAAGGTATT
* * * *
9303095 TAACCTTTCATCTAACTGGCATAATTGATACCTTTCTGTCAAATGCATAGATAGGCCATTAATAT
131 TAACCTTTCATCTAACTGGCATAATTGACACCTTTCTCTCAAATGCACA-TTAGGCCATTAATAT
* * **
9303160 TTTACTCAAAGGTATTTAACCTTTCATCTAACTAGCATAATTGACATCTTTCTGTCAAATGTACA
195 TTTACTCAAAGGTATTTAACCTTTCATCTAACTA-CATTATTGACACCTTTCTGTCAAATACACA
* *
9303225 ACTAGGCCATTAATCTTTTACT
259 GCTAGGCCATTAATATTTTACT
9303247 TTAGAACTGT
Statistics
Matches: 663, Mismatches: 90, Indels: 25
0.85 0.12 0.03
Matches are distributed among these distances:
482 151 0.23
483 57 0.09
484 3 0.00
485 343 0.52
486 105 0.16
487 4 0.01
ACGTcount: A:0.31, C:0.21, G:0.11, T:0.36
Consensus pattern (484 bp):
TTTCTATCAAATGAACAGCTAGGTCATTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAAC
TGGCATAATTAACACCTTTCTGTCAAATGCACAGCTAGGCCATTAATCTTTTACTCAAAGGTATT
TAACCTTTCATCTAACTGGCATAATTGACACCTTTCTCTCAAATGCACATTAGGCCATTAATATT
TTACTCAAAGGTATTTAACCTTTCATCTAACTACATTATTGACACCTTTCTGTCAAATACACAGC
TAGGCCATTAATATTTTACTCAAAGATATTTAACATTTCATCTAACATGCATAATTGACACCTTT
CTATCAAATGCACAGCTAACCCATGAATCTTTCACTCAAAGGTATTTAACCTTTCATCTAACTGG
CATAATTGACACATTTCTATCAAATGCACAGATAGGCCATTAATCTTTTACTCAAAGGTATTTAA
CCTTTCAACTAACTGGCATAACTGACACA
Found at i:9303461 original size:55 final size:54
Alignment explanation
Indices: 9303348--9303497 Score: 196
Period size: 55 Copynumber: 2.8 Consensus size: 54
9303338 TACGGTAATA
* * * *
9303348 CATAAATTTATTATAAATTTCTTAG-TTTG-CACATAGTACCCATACAGAAATT
1 CATAAACTTATTATGAATTTCTTAGTTTTGACACATAGTGCCCATACAAAAATT
* * *
9303400 TATAAACTTATTAGGAATTTCTTAGTTTTGTACACACAGTGCCCATACAAAAATT
1 CATAAACTTATTATGAATTTCTTAGTTTTG-ACACATAGTGCCCATACAAAAATT
*
9303455 CATAAACTTATTATGAATTTCCTAGTTTTGCACACATAGTGCC
1 CATAAACTTATTATGAATTTCTTAGTTTTG-ACACATAGTGCC
9303498 ATTTGGTAAT
Statistics
Matches: 83, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
52 21 0.25
53 4 0.05
55 58 0.70
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.37
Consensus pattern (54 bp):
CATAAACTTATTATGAATTTCTTAGTTTTGACACATAGTGCCCATACAAAAATT
Found at i:9303857 original size:22 final size:22
Alignment explanation
Indices: 9303815--9303889 Score: 109
Period size: 22 Copynumber: 3.5 Consensus size: 22
9303805 TGGCTTAATA
*
9303815 GTATCGATAC--CCATACAATG
1 GTATCGATACTTCCATACTATG
**
9303835 GTATCGATACTTTTATACTATG
1 GTATCGATACTTCCATACTATG
9303857 GTATCGATACTTCCATACTATG
1 GTATCGATACTTCCATACTATG
9303879 GTATCGATACT
1 GTATCGATACT
9303890 CTGTTACAGT
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
20 10 0.21
22 38 0.79
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (22 bp):
GTATCGATACTTCCATACTATG
Found at i:9303956 original size:20 final size:21
Alignment explanation
Indices: 9303931--9303980 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
9303921 TAAATTAATT
*
9303931 GTATCGATACCTTCTCCA-AA
1 GTATCGATACCTTCCCCATAA
*
9303951 GTATCGATA-CTTCCCCATTA
1 GTATCGATACCTTCCCCATAA
9303971 GTATCGATAC
1 GTATCGATAC
9303981 TAATTGCATC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 7 0.27
20 19 0.73
ACGTcount: A:0.28, C:0.28, G:0.12, T:0.32
Consensus pattern (21 bp):
GTATCGATACCTTCCCCATAA
Found at i:9307736 original size:2 final size:2
Alignment explanation
Indices: 9307729--9307777 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
9307719 TATGCACTGT
9307729 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9307771 TA TA TA T
1 TA TA TA T
9307778 GAAATTCTTA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:9308196 original size:81 final size:81
Alignment explanation
Indices: 9307866--9309059 Score: 1515
Period size: 81 Copynumber: 14.8 Consensus size: 81
9307856 AAAGTAGTCC
* * * * * * * *
9307866 TTCATCCAACTTGCATTATTGGCACCATTCTATCAAATGCACTATC-A-GACATTTAATCTTTTA
1 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCAC-AGCTAGGCCA-TTAATCTTTTA
* *
9307929 CCCAAAGGAATTTAACCT
64 CTCAAAGGTATTTAACCT
* * * * * ** ** *
9307947 TTCACCTAACAGGCATGATTGACACCTTTATGTCAAAGGCACATTTAGGCTTTTAGTCTTTTACT
1 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGCTAGGCCATTAATCTTTTACT
9308012 CAAAGGTATTT-ACC-
66 CAAAGGTATTTAACCT
* * * * * * *** *
9308026 TTCATCTAACTAGCATGATTGACACC-TTCTGCCAAAGGAACAGTTAGGATTTTAGTCTTTTACT
1 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGCTAGGCCATTAATCTTTTACT
9308090 CAAAGGTATTTAACCT
66 CAAAGGTATTTAACCT
* * * *
9308106 TTTATCTAACTGGCATGATTGACACC-TTCTGTTAAATGCACAGCTAGGTCATTAATCTTTTTAC
1 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGCTAGGCCATTAATC-TTTTAC
* *
9308170 TCAAAGGTATTTATCAT
65 TCAAAGGTATTTAACCT
* * * *
9308187 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAGATGCACAACTATGTCATTAATCTTTTACT
1 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGCTAGGCCATTAATCTTTTACT
* *
9308252 CAAATGTATTTAACAT
66 CAAAGGTATTTAACCT
* * * * *
9308268 TTAATCTAATTGGCATAATTGACACCTTTTTGTCAAATGCATAGCTAGGCCATTAATCTTTTAAT
1 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGCTAGGCCATTAATCTTTTACT
* *
9308333 CAAAGGCATTTAAACT
66 CAAAGGTATTTAACCT
* *
9308349 TTCATCTAACT-GCATAATTGACACCTTTCTGTCAAATGCACAGCTAGACTATTAATC-TTTACT
1 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGCTAGGCCATTAATCTTTTACT
*
9308412 CAAAGGTATTTAACAT
66 CAAAGGTATTTAACCT
* * *
9308428 TTCATCTAACTGGCAAAATTGACACCTTTCTATCAAATGCACAGCTAGGCCGTTAATCTTTTACT
1 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGCTAGGCCATTAATCTTTTACT
9308493 CAAAGGTATTTAACCT
66 CAAAGGTATTTAACCT
* * *
9308509 TTCATCTAACTGACATAATTGACACCTTTTTGTCAAAAGCACAGCTAGGCCATTAATCTTTTACT
1 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGCTAGGCCATTAATCTTTTACT
**
9308574 CAAAGGTATTTAATGT
66 CAAAGGTATTTAACCT
* * * * *
9308590 TTCATCTAACTGGCATAATTGACACATTTATGTCAAATGCACATCTAGGACATTAATATTTTACT
1 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGCTAGGCCATTAATCTTTTACT
* *
9308655 AAAAGGTATTTAATCT
66 CAAAGGTATTTAACCT
* * **
9308671 TTCATCTAACTGGCATAATTGACACCTTTCTATCAAATGCATAATTAGGCCATTAATCTTTTACT
1 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGCTAGGCCATTAATCTTTTACT
9308736 CAAAGGTATTTAACCT
66 CAAAGGTATTTAACCT
* *
9308752 TTCATCTAACTGAG-ATAATTGACACCTTTCTGTCAAATGCACAGATGGGCCATTAATCTTTTAC
1 TTCATCTAACTG-GCATAATTGACACCTTTCTGTCAAATGCACAGCTAGGCCATTAATCTTTTAC
* *
9308816 TCAAAGATATTTAACAT
65 TCAAAGGTATTTAACCT
* * * *
9308833 TTCATCTAATTGGCATAATTGACACATTTCTATTAAATGCACAGCTAGGCCATTAATCTTTTACT
1 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGCTAGGCCATTAATCTTTTACT
9308898 CAAAGGTATTTAACCT
66 CAAAGGTATTTAACCT
* *
9308914 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCATAGCTAGGCCATTAATCTCTTACT
1 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGCTAGGCCATTAATCTTTTACT
*
9308979 CAAAGTTATTTAACCT
66 CAAAGGTATTTAACCT
* * * *
9308995 TTCATCTAATTGGCATAATTGACACATTTCTGTCAAATGCACAACTAGGCCGTTAATCTTTTACT
1 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGCTAGGCCATTAATCTTTTACT
9309060 TTAGAACAGT
Statistics
Matches: 973, Mismatches: 130, Indels: 20
0.87 0.12 0.02
Matches are distributed among these distances:
78 44 0.05
79 55 0.06
80 135 0.14
81 710 0.73
82 29 0.03
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.36
Consensus pattern (81 bp):
TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGCTAGGCCATTAATCTTTTACT
CAAAGGTATTTAACCT
Found at i:9309201 original size:55 final size:55
Alignment explanation
Indices: 9309160--9309367 Score: 335
Period size: 55 Copynumber: 3.8 Consensus size: 55
9309150 TATGGTAATA
9309160 CATAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCCCATACAGAAATT
1 CATAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCCCATACAGAAATT
* * *
9309215 CACAAATTTATTATGAATTTCTTAGTTTTGCACACATAGTGCCCATACAGAAATT
1 CATAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCCCATACAGAAATT
* * * *
9309270 CATAAAATTATTAGGAATTTCTTAGTTTTGCACACACAGTACCCATACAAAAATT
1 CATAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCCCATACAGAAATT
* *
9309325 CATAAACTTATTATGAATTTCCTAGTTTTGCACACATAGTGCC
1 CATAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCC
9309368 ATTTGGTAAT
Statistics
Matches: 139, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
55 139 1.00
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (55 bp):
CATAAACTTATTATGAATTTCTTAGTTTTGCACACACAGTGCCCATACAGAAATT
Found at i:9309819 original size:54 final size:55
Alignment explanation
Indices: 9309748--9309856 Score: 157
Period size: 54 Copynumber: 2.0 Consensus size: 55
9309738 AAATTTAAAA
** * *
9309748 CAAAATTTCGAATTAATATTGTGTATCGATGTACTACTACAGTGCATCGATGCAC
1 CAAAATTTCGAATTAATATTGTGTATCGATAAACCACTACAATGCATCGATGCAC
* *
9309803 CAAAATTT-TAATTAATATTGTGTATCGATAAACCGCTACAATGCATCGATGCAC
1 CAAAATTTCGAATTAATATTGTGTATCGATAAACCACTACAATGCATCGATGCAC
9309857 TGCTACAATA
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
54 40 0.83
55 8 0.17
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (55 bp):
CAAAATTTCGAATTAATATTGTGTATCGATAAACCACTACAATGCATCGATGCAC
Found at i:9310349 original size:44 final size:46
Alignment explanation
Indices: 9310245--9310444 Score: 282
Period size: 46 Copynumber: 4.4 Consensus size: 46
9310235 CATTTATCTT
*
9310245 ATAAGCTCGTAAGCTTATTTTACCAAAATACTTACCATTTAATTCC
1 ATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTTAATTCC
*
9310291 ATAAGCTAGTAAGCTTATTTTACCAATATACTTACCA-TT-ATTCC
1 ATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTTAATTCC
* * * *
9310335 ATAAGCTTGTAAGCTTATTTTACAAATATACTTACAATTTAATCCC
1 ATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTTAATTCC
* * *
9310381 ATAAGCTCTTAAGCTTATTTTACCAATATATTTTCCA-TT-ATTCC
1 ATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTTAATTCC
*
9310425 AAAAGCTCGTAAGCTTATTT
1 ATAAGCTCGTAAGCTTATTT
9310445 GCATGCTTAC
Statistics
Matches: 137, Mismatches: 15, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
44 61 0.45
45 6 0.04
46 70 0.51
ACGTcount: A:0.34, C:0.20, G:0.07, T:0.40
Consensus pattern (46 bp):
ATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTTAATTCC
Found at i:9310398 original size:90 final size:90
Alignment explanation
Indices: 9310245--9310444 Score: 312
Period size: 90 Copynumber: 2.2 Consensus size: 90
9310235 CATTTATCTT
* *
9310245 ATAAGCTCGTAAGCTTATTTTACCAAAATACTTACCATTTAATTCCATAAGCTAGTAAGCTTATT
1 ATAAGCTCGTAAGCTTATTTTACCAAAATACTTACAATTTAATCCCATAAGCTAGTAAGCTTATT
9310310 TTACCAATATACTTACCATTATTCC
66 TTACCAATATACTTACCATTATTCC
* **
9310335 ATAAGCTTGTAAGCTTATTTTA-CAAATATACTTACAATTTAATCCCATAAGCTCTTAAGCTTAT
1 ATAAGCTCGTAAGCTTATTTTACCAAA-ATACTTACAATTTAATCCCATAAGCTAGTAAGCTTAT
* *
9310399 TTTACCAATATATTTTCCATTATTCC
65 TTTACCAATATACTTACCATTATTCC
*
9310425 AAAAGCTCGTAAGCTTATTT
1 ATAAGCTCGTAAGCTTATTT
9310445 GCATGCTTAC
Statistics
Matches: 100, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
89 4 0.04
90 96 0.96
ACGTcount: A:0.34, C:0.20, G:0.07, T:0.40
Consensus pattern (90 bp):
ATAAGCTCGTAAGCTTATTTTACCAAAATACTTACAATTTAATCCCATAAGCTAGTAAGCTTATT
TTACCAATATACTTACCATTATTCC
Found at i:9310600 original size:40 final size:40
Alignment explanation
Indices: 9310549--9310669 Score: 181
Period size: 40 Copynumber: 3.0 Consensus size: 40
9310539 ACCGTATTGC
* *
9310549 TACACGTAAGGTCCTGCCCACCATATACACCAAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCAAAGTGTAT
*
9310589 TACACATAAGGTCGTGCCCACCATATATACCAAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCAAAGTGTAT
* * *
9310629 AACACATAAGGTCGTACCCACCAT-TACACCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCAAAGTGTAT
9310668 TA
1 TA
9310670 TAAACCTGCA
Statistics
Matches: 73, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 14 0.19
40 59 0.81
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.23
Consensus pattern (40 bp):
TACACATAAGGTCGTGCCCACCATATACACCAAAGTGTAT
Found at i:9312064 original size:27 final size:27
Alignment explanation
Indices: 9312034--9312091 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
9312024 ATTTAAATCA
9312034 TTAACTTGAGAAAATACCAATATACCC
1 TTAACTTGAGAAAATACCAATATACCC
9312061 TTAACTTGAGAAAATACCAATATACCC
1 TTAACTTGAGAAAATACCAATATACCC
9312088 TTAA
1 TTAA
9312092 TATATCTTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.45, C:0.21, G:0.07, T:0.28
Consensus pattern (27 bp):
TTAACTTGAGAAAATACCAATATACCC
Found at i:9312424 original size:30 final size:30
Alignment explanation
Indices: 9312390--9312447 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
9312380 TTGGTCCTTT
*
9312390 AACTTT-CCAAAGTTAATACTTTGGTCACCA
1 AACTTTACCAAA-TTAATAATTTGGTCACCA
*
9312420 AACTTTACCAAATTTATAATTTGGTCAC
1 AACTTTACCAAATTAATAATTTGGTCAC
9312448 TAAATAAATC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36
Consensus pattern (30 bp):
AACTTTACCAAATTAATAATTTGGTCACCA
Found at i:9314126 original size:39 final size:38
Alignment explanation
Indices: 9314083--9314186 Score: 108
Period size: 39 Copynumber: 2.7 Consensus size: 38
9314073 GTAAAATATA
9314083 TTTTTTTCTCATCTTATTTTTCTTTTTGTTCTTTCTCTT
1 TTTTTTTCTCATCTTATTTTTCTTTTTGTTCTTT-TCTT
*
9314122 TTTTTTTCTTTCA-C-TATTTTTCTTTTCTTTTCTTTTCTT
1 TTTTTTTC--TCATCTTATTTTTCTTTT-TGTTCTTTTCTT
* *
9314161 TTTCTTTTCT--TTTTCTTTTTCTTTTT
1 TTT-TTTTCTCATCTTATTTTTCTTTTT
9314187 CATTTTTTTA
Statistics
Matches: 56, Mismatches: 3, Indels: 14
0.77 0.04 0.19
Matches are distributed among these distances:
37 1 0.02
38 12 0.21
39 27 0.48
40 13 0.23
41 3 0.05
ACGTcount: A:0.04, C:0.17, G:0.01, T:0.78
Consensus pattern (38 bp):
TTTTTTTCTCATCTTATTTTTCTTTTTGTTCTTTTCTT
Found at i:9314130 original size:16 final size:16
Alignment explanation
Indices: 9314105--9314186 Score: 80
Period size: 16 Copynumber: 5.2 Consensus size: 16
9314095 CTTATTTTTC
*
9314105 TTTTTGTTCTTTCTCT
1 TTTTTTTTCTTTCTCT
*
9314121 TTTTTTTTCTTTCAC-
1 TTTTTTTTCTTTCTCT
*
9314136 -TATTTTTCTTT-TCT
1 TTTTTTTTCTTTCTCT
* *
9314150 TTTCTTTTCTTTTTCT
1 TTTTTTTTCTTTCTCT
*
9314166 TTTCTTTTTCTTTTTCT
1 TTT-TTTTTCTTTCTCT
9314183 TTTT
1 TTTT
9314187 CATTTTTTTA
Statistics
Matches: 55, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
13 1 0.02
14 10 0.18
15 9 0.16
16 20 0.36
17 15 0.27
ACGTcount: A:0.02, C:0.17, G:0.01, T:0.79
Consensus pattern (16 bp):
TTTTTTTTCTTTCTCT
Found at i:9314147 original size:5 final size:5
Alignment explanation
Indices: 9314100--9314185 Score: 70
Period size: 5 Copynumber: 16.8 Consensus size: 5
9314090 CTCATCTTAT
* * * *
9314100 TTTTC TTTT- TGTTC TTTCTC TTTTT TTTTC -TTTC ACTAT- TTTTC TTTTC
1 TTTTC TTTTC TTTTC TTT-TC TTTTC TTTTC TTTTC -TTTTC TTTTC TTTTC
9314149 TTTTC TTTTC TTTTTC TTTTC TTTTTC TTTTTC TTTT
1 TTTTC TTTTC -TTTTC TTTTC -TTTTC -TTTTC TTTT
9314186 TCATTTTTTT
Statistics
Matches: 67, Mismatches: 7, Indels: 14
0.76 0.08 0.16
Matches are distributed among these distances:
4 9 0.13
5 35 0.52
6 23 0.34
ACGTcount: A:0.02, C:0.17, G:0.01, T:0.79
Consensus pattern (5 bp):
TTTTC
Found at i:9314186 original size:6 final size:6
Alignment explanation
Indices: 9314099--9314193 Score: 83
Period size: 6 Copynumber: 15.8 Consensus size: 6
9314089 TCTCATCTTA
* **
9314099 TTTTTC TTTTTG TTCTTTC TCTTTT- TTTTTC TTTCAC TATTTT- TCTTTTC
1 TTTTTC TTTTTC TT-TTTC T-TTTTC TTTTTC TTTTTC T-TTTTC T-TTTTC
9314149 -TTTTC -TTTTC TTTTTC -TTTTC TTTTTC TTTTTC TTTTTC ATTTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC -TTTTT
9314194 TTAATATTTT
Statistics
Matches: 74, Mismatches: 7, Indels: 15
0.77 0.07 0.16
Matches are distributed among these distances:
5 19 0.26
6 40 0.54
7 14 0.19
8 1 0.01
ACGTcount: A:0.03, C:0.17, G:0.01, T:0.79
Consensus pattern (6 bp):
TTTTTC
Found at i:9314195 original size:16 final size:15
Alignment explanation
Indices: 9314099--9314186 Score: 81
Period size: 15 Copynumber: 5.7 Consensus size: 15
9314089 TCTCATCTTA
*
9314099 TTTTTCTTTTTGTTC
1 TTTTTCTTTTTTTTC
*
9314114 TTTCTCTTTTTTTT-
1 TTTTTCTTTTTTTTC
* * *
9314128 TCTTTCACTATTTTTC
1 TTTTTC-TTTTTTTTC
9314144 -TTTTCTTTTCTTTTC
1 TTTTTCTTTT-TTTTC
9314159 TTTTTCTTTTCTTTTTC
1 TTTTTC-TTT-TTTTTC
9314176 TTTTTCTTTTT
1 TTTTTCTTTTT
9314187 CATTTTTTTA
Statistics
Matches: 58, Mismatches: 9, Indels: 12
0.73 0.11 0.15
Matches are distributed among these distances:
14 6 0.10
15 29 0.50
16 8 0.14
17 14 0.24
18 1 0.02
ACGTcount: A:0.02, C:0.17, G:0.01, T:0.80
Consensus pattern (15 bp):
TTTTTCTTTTTTTTC
Found at i:9316525 original size:22 final size:21
Alignment explanation
Indices: 9316499--9316549 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
9316489 TACGTATTTA
*
9316499 TGAACAGTAATAAATAGTACCG
1 TGAACAGTAAT-AACAGTACCG
**
9316521 TGAACAGTAATGGCAGTACCG
1 TGAACAGTAATAACAGTACCG
9316542 TGAACAGT
1 TGAACAGT
9316550 GTATCGATGC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 15 0.58
22 11 0.42
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.22
Consensus pattern (21 bp):
TGAACAGTAATAACAGTACCG
Found at i:9316644 original size:21 final size:21
Alignment explanation
Indices: 9316618--9316657 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
9316608 AATATTTTGT
*
9316618 ATCGATGTACTGCTACAGTGC
1 ATCGATGCACTGCTACAGTGC
9316639 ATCGATGCACTGCTACAGT
1 ATCGATGCACTGCTACAGT
9316658 AATTTCAGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (21 bp):
ATCGATGCACTGCTACAGTGC
Found at i:9317113 original size:23 final size:23
Alignment explanation
Indices: 9317087--9317157 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 23
9317077 TCCATAAGCT
9317087 CTTAAGCTTATTTTACCAATATA
1 CTTAAGCTTATTTTACCAATATA
9317110 CTT-A-C-TATTATT--CAATA-A
1 CTTAAGCTTATT-TTACCAATATA
*
9317128 GCTCGTAAGCTTATTTTACAAATATA
1 -CT--TAAGCTTATTTTACCAATATA
9317154 CTTA
1 CTTA
9317158 CCATTTAATC
Statistics
Matches: 37, Mismatches: 1, Indels: 20
0.64 0.02 0.34
Matches are distributed among these distances:
18 1 0.03
19 7 0.19
20 4 0.11
21 4 0.11
22 2 0.05
23 8 0.22
24 4 0.11
25 6 0.16
26 1 0.03
ACGTcount: A:0.35, C:0.17, G:0.06, T:0.42
Consensus pattern (23 bp):
CTTAAGCTTATTTTACCAATATA
Found at i:9317187 original size:90 final size:90
Alignment explanation
Indices: 9317035--9317233 Score: 314
Period size: 90 Copynumber: 2.2 Consensus size: 90
9317025 CATTTATCTT
* * * *
9317035 ATAAGCTTGTAAGCTTATTTTACCAAATACTTACCATTTAATTCCATAAGCTCTTAAGCTTATTT
1 ATAAGCTCGTAAGCTTATTTTACAAAATACTTACCATTTAATCCCATAAGCTCGTAAGCTTATTT
9317100 TACCAATATACTTACT-ATTATT-CA
66 TACCAATATACTT-CTCATTATTCCA
9317124 ATAAGCTCGTAAGCTTATTTTACAAATATACTTACCATTTAATCCCATAAGCTCGTAAGCTTATT
1 ATAAGCTCGTAAGCTTATTTTACAAA-ATACTTACCATTTAATCCCATAAGCTCGTAAGCTTATT
*
9317189 TTACCAATATACTTGTCATTATTCCA
65 TTACCAATATACTTCTCATTATTCCA
9317215 A-AAGCTCGTAAGCTTATTT
1 ATAAGCTCGTAAGCTTATTT
9317234 GCATGCTTAC
Statistics
Matches: 102, Mismatches: 5, Indels: 5
0.91 0.04 0.04
Matches are distributed among these distances:
89 25 0.25
90 74 0.73
91 3 0.03
ACGTcount: A:0.33, C:0.20, G:0.08, T:0.40
Consensus pattern (90 bp):
ATAAGCTCGTAAGCTTATTTTACAAAATACTTACCATTTAATCCCATAAGCTCGTAAGCTTATTT
TACCAATATACTTCTCATTATTCCA
Found at i:9317190 original size:46 final size:44
Alignment explanation
Indices: 9317035--9317233 Score: 274
Period size: 44 Copynumber: 4.5 Consensus size: 44
9317025 CATTTATCTT
*
9317035 ATAAGCTTGTAAGCTTATTTTACCAA-ATACTTACCATTTAATTCC
1 ATAAGCTCGTAAGCTTATTTTACCAATATACTTACCA-TT-ATTCC
* * *
9317080 ATAAGCTCTTAAGCTTATTTTACCAATATACTTACTATTATTCA
1 ATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTATTCC
* *
9317124 ATAAGCTCGTAAGCTTATTTTACAAATATACTTACCATTTAATCCC
1 ATAAGCTCGTAAGCTTATTTTACCAATATACTTACCA-TT-ATTCC
**
9317170 ATAAGCTCGTAAGCTTATTTTACCAATATACTTGTCATTATTCC
1 ATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTATTCC
*
9317214 AAAAGCTCGTAAGCTTATTT
1 ATAAGCTCGTAAGCTTATTT
9317234 GCATGCTTAC
Statistics
Matches: 137, Mismatches: 14, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
44 61 0.45
45 30 0.22
46 46 0.34
ACGTcount: A:0.33, C:0.20, G:0.08, T:0.40
Consensus pattern (44 bp):
ATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTATTCC
Found at i:9317382 original size:40 final size:40
Alignment explanation
Indices: 9317338--9317459 Score: 181
Period size: 40 Copynumber: 3.0 Consensus size: 40
9317328 ACCGTAGTGC
* *
9317338 TACACATAAGGTCGTGCCCACCATATGCACTGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
* ** *
9317378 TACACATAAGGTCGTACCCACCATATTTACCAAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
*
9317418 TACACATAAGGTTGTGCCCACCATATACACCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
9317458 TA
1 TA
9317460 TAAACCTACA
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 72 1.00
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (40 bp):
TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
Found at i:9318337 original size:30 final size:29
Alignment explanation
Indices: 9318271--9318337 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
9318261 ACAACCCCTT
* * * *
9318271 AATTTTCCAAAATTTACAAATTGATCTCT
1 AATTTTTCAAAAATTACAAAATGATCTCA
* *
9318300 AACTTTTCAAAAATTACAAAATGGTCCTCA
1 AATTTTTCAAAAATTACAAAATGAT-CTCA
9318330 AATTTTTC
1 AATTTTTC
9318338 TAAGACTTGT
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
29 20 0.67
30 10 0.33
ACGTcount: A:0.39, C:0.18, G:0.04, T:0.39
Consensus pattern (29 bp):
AATTTTTCAAAAATTACAAAATGATCTCA
Found at i:9318872 original size:28 final size:28
Alignment explanation
Indices: 9318809--9318873 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 28
9318799 CAACAACCCT
* * *
9318809 TAATTTTCCAAAATTTACAATTGATCTC
1 TAATTTTTCAAAAATTACAAATGATCTC
* *
9318837 TAACTTTTCAAAAATTACAAAATGGTCTC
1 TAATTTTTCAAAAATTAC-AAATGATCTC
9318866 -AATTTTTC
1 TAATTTTTC
9318874 TAAGACTTGT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
28 22 0.73
29 8 0.27
ACGTcount: A:0.37, C:0.17, G:0.05, T:0.42
Consensus pattern (28 bp):
TAATTTTTCAAAAATTACAAATGATCTC
Found at i:9319483 original size:29 final size:29
Alignment explanation
Indices: 9319432--9319487 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
9319422 TTGGTCCCTA
*
9319432 AACTTTCCAAAGTTAATACTTTGGTCACC
1 AACTTTCCAAAGTTAATAATTTGGTCACC
*
9319461 AACTTTACCAAA-TTTATAATTTGGTCA
1 AACTTT-CCAAAGTTAATAATTTGGTCA
9319488 GTAAATAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 19 0.79
30 5 0.21
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.38
Consensus pattern (29 bp):
AACTTTCCAAAGTTAATAATTTGGTCACC
Found at i:9320825 original size:60 final size:60
Alignment explanation
Indices: 9320752--9321137 Score: 569
Period size: 60 Copynumber: 6.4 Consensus size: 60
9320742 ACTCTAAAAT
* * *
9320752 AAAAGTTAAATGTCTAACGGTGCATTTTTGCAGAAAAGTTCCACTAATGCAAGTTAGATG
1 AAAAGTTAAATGCCTAACGGTGCATTTTGGCAGAAAAGTGCCACTAATGCAAGTTAGATG
* *
9320812 AAAAGTTAAATGTCTAACGGTACATTTTGGCAGAAAAGTGCCACTAATGCAAGTTAGATG
1 AAAAGTTAAATGCCTAACGGTGCATTTTGGCAGAAAAGTGCCACTAATGCAAGTTAGATG
* * *
9320872 AAAAGTTAAATGTCTAACGGTGCATTTTGGCAGAAAAATGCTACTAATGCAAGTTAGATG
1 AAAAGTTAAATGCCTAACGGTGCATTTTGGCAGAAAAGTGCCACTAATGCAAGTTAGATG
* *
9320932 AAAAGTTAAAT-CCTAACGGTGCATTTTGGCAGAAAGGTGCCACTAATGCAATTTAGATG
1 AAAAGTTAAATGCCTAACGGTGCATTTTGGCAGAAAAGTGCCACTAATGCAAGTTAGATG
* *
9320991 AAAAGTTAAATGCCTAACGGTGCATTATCGGCATG-AAAGTGCCACTAATGCAAGTTAAATG
1 AAAAGTTAAATGCCTAACGGTGCATT-TTGGCA-GAAAAGTGCCACTAATGCAAGTTAGATG
* * *
9321052 AAAAGTTAAATGCCTAACGGTGCATTTTGGCATAAATGTGCCACTAATGCAAGTTAGGTG
1 AAAAGTTAAATGCCTAACGGTGCATTTTGGCAGAAAAGTGCCACTAATGCAAGTTAGATG
* * * *
9321112 AAAAGGTAATTGCATAATGGTGCATT
1 AAAAGTTAAATGCCTAACGGTGCATT
9321138 ATCGGCATGA
Statistics
Matches: 298, Mismatches: 24, Indels: 8
0.90 0.07 0.02
Matches are distributed among these distances:
59 54 0.18
60 189 0.63
61 54 0.18
62 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.28
Consensus pattern (60 bp):
AAAAGTTAAATGCCTAACGGTGCATTTTGGCAGAAAAGTGCCACTAATGCAAGTTAGATG
Found at i:9321191 original size:46 final size:46
Alignment explanation
Indices: 9321122--9321265 Score: 252
Period size: 46 Copynumber: 3.1 Consensus size: 46
9321112 AAAAGGTAAT
*
9321122 TGCATAATGGTGCATTATCGGCATGAAAGGATGCCATAAATGAAAA
1 TGCATAACGGTGCATTATCGGCATGAAAGGATGCCATAAATGAAAA
* *
9321168 TTCATAACGGTGCATTATCGGCATGAAAGGATGTCATAAATGAAAA
1 TGCATAACGGTGCATTATCGGCATGAAAGGATGCCATAAATGAAAA
*
9321214 TGCATAACGGTGGATTATCGGCATGAAAGGATGCCATAAATGAAAA
1 TGCATAACGGTGCATTATCGGCATGAAAGGATGCCATAAATGAAAA
9321260 TGCATA
1 TGCATA
9321266 TATATATATA
Statistics
Matches: 92, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 92 1.00
ACGTcount: A:0.39, C:0.13, G:0.24, T:0.24
Consensus pattern (46 bp):
TGCATAACGGTGCATTATCGGCATGAAAGGATGCCATAAATGAAAA
Found at i:9321850 original size:56 final size:56
Alignment explanation
Indices: 9321789--9321900 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
9321779 TATTGAATGT
9321789 GATAATTTTTAGTAATATGTTTCAACTAATGTTTTGTTTTAAGTTTGAAACAAAAA
1 GATAATTTTTAGTAATATGTTTCAACTAATGTTTTGTTTTAAGTTTGAAACAAAAA
9321845 GATAATTTTTAGTAATATGTTTCAACTAATGTTTTGTTTTAAGTTTGAAACAAAAA
1 GATAATTTTTAGTAATATGTTTCAACTAATGTTTTGTTTTAAGTTTGAAACAAAAA
9321901 TTTTATGGGT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.38, C:0.05, G:0.12, T:0.45
Consensus pattern (56 bp):
GATAATTTTTAGTAATATGTTTCAACTAATGTTTTGTTTTAAGTTTGAAACAAAAA
Found at i:9328330 original size:3 final size:3
Alignment explanation
Indices: 9328322--9328348 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
9328312 TTATCTTTCG
9328322 TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT
9328349 CGATTTTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:9330842 original size:21 final size:20
Alignment explanation
Indices: 9330756--9330913 Score: 77
Period size: 21 Copynumber: 7.8 Consensus size: 20
9330746 AAATGACCAA
**
9330756 CAAAATCGCAACGCGA-AAT
1 CAAAATCGCAACGCGATTTT
* ***
9330775 AAAAATCGCAACGCGATCCC
1 CAAAATCGCAACGCGATTTT
* ** *
9330795 CAGAATCGCAAATC-AGTTTC
1 CAAAATCGCAACGCGA-TTTT
9330815 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * * *
9330836 GAAAATCGCGATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
9330857 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* *
9330877 CAATAATCGCAACGCGAATAT
1 CAA-AATCGCAACGCGATTTT
*
9330898 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
9330914 ACACATAAAT
Statistics
Matches: 102, Mismatches: 31, Indels: 11
0.71 0.22 0.08
Matches are distributed among these distances:
19 16 0.16
20 42 0.41
21 44 0.43
ACGTcount: A:0.38, C:0.25, G:0.18, T:0.20
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:9331258 original size:20 final size:20
Alignment explanation
Indices: 9330881--9331271 Score: 450
Period size: 20 Copynumber: 19.4 Consensus size: 20
9330871 GATTTTCAAT
* ** *
9330881 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGTATCCGTA
* *
9330901 AATCGCAACGCG-AACACATA
1 AATCGCAACGCGTATC-CGTA
9330921 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
9330941 AATCGCAACGTGTATCCGTAA
1 AATCGCAACGCGTATCCGT-A
**
9330962 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGTATCCGTA
*
9330982 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
9331002 TATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* * *
9331022 AATCGCAACG-ATAATACATAA
1 AATCGCAACGCGT-ATCCGT-A
9331043 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
9331063 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
9331083 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
9331103 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
9331123 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
9331143 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
9331163 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
9331183 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
9331203 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
9331223 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
9331243 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
9331263 AATCACAAC
1 AATCGCAAC
9331272 ACTGAAATTT
Statistics
Matches: 319, Mismatches: 40, Indels: 24
0.83 0.10 0.06
Matches are distributed among these distances:
19 4 0.01
20 279 0.87
21 35 0.11
22 1 0.00
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGTATCCGTA
Found at i:9331969 original size:24 final size:24
Alignment explanation
Indices: 9331941--9331986 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
9331931 AAATTTGGTC
9331941 TGGTCAATATC-CGGACTTTGATAT
1 TGGTCAATA-CACGGACTTTGATAT
*
9331965 TGGTCAATACACGGATTTTGAT
1 TGGTCAATACACGGACTTTGAT
9331987 GATGTTTCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (24 bp):
TGGTCAATACACGGACTTTGATAT
Done.