Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008747.1 Hibiscus syriacus cultivar Beakdansim tig00111837_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12616935
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 43 of 51
Found at i:10790907 original size:18 final size:18
Alignment explanation
Indices: 10790884--10790928 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
10790874 GCTTGAGATA
*
10790884 ACCTAAAGAAAATAAAAT
1 ACCTAAAGAAAATAAAAC
*
10790902 ACCTAAAGTAAATAAAAC
1 ACCTAAAGAAAATAAAAC
10790920 ACCTAAAGA
1 ACCTAAAGA
10790929 TAATCCTAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.62, C:0.16, G:0.07, T:0.16
Consensus pattern (18 bp):
ACCTAAAGAAAATAAAAC
Found at i:10797758 original size:89 final size:89
Alignment explanation
Indices: 10797607--10797800 Score: 361
Period size: 89 Copynumber: 2.2 Consensus size: 89
10797597 GTTGAGAAAA
*
10797607 TATTTTGTGCATGATATGAAATGATTATAACTTGCAATTTCATTTTGGTTGAGTTTTTTAAGATT
1 TATTTTGTGCATGATATGAAATGAATATAACTTGCAATTTCATTTTGGTTGAGTTTTTTAAGATT
10797672 TTAGTGATCAAATTTATATTTACT
66 TTAGTGATCAAATTTATATTTACT
10797696 TATTTTGTGCATGATATGAAATGAATATAACTTGCAATTTCATTTTGGTTGAGTTTTTTAAGATT
1 TATTTTGTGCATGATATGAAATGAATATAACTTGCAATTTCATTTTGGTTGAGTTTTTTAAGATT
10797761 TTAGTGATCAAATTTATATTTACT
66 TTAGTGATCAAATTTATATTTACT
* *
10797785 TATTTTTTTCATGATA
1 TATTTTGTGCATGATA
10797801 GGCTGAAAGA
Statistics
Matches: 102, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
89 102 1.00
ACGTcount: A:0.29, C:0.07, G:0.14, T:0.50
Consensus pattern (89 bp):
TATTTTGTGCATGATATGAAATGAATATAACTTGCAATTTCATTTTGGTTGAGTTTTTTAAGATT
TTAGTGATCAAATTTATATTTACT
Found at i:10804694 original size:90 final size:91
Alignment explanation
Indices: 10804557--10804862 Score: 317
Period size: 90 Copynumber: 3.4 Consensus size: 91
10804547 AGATTCAGTG
*
10804557 AATTCATCAAGT-TCATCTCACAAGGACCACAC-AAAGTCTGAGATATAAATTTATTAAGAATAT
1 AATTCATCAAGTCT-GTCTCACAAGGACCACACGAAAGTCTGAGATATAAATTTATTAAGAATAT
10804620 ATAATTGTTCATTTTATCACTTTGGTA
65 ATAATTGTTCATTTTATCACTTTGGTA
* * * * * *
10804647 AATTCATCAAGTCTGTCTCAACAAGGACCAC-CGAAATTTTG-GGTATAAACTCATTAATAA-AT
1 AATTCATCAAGTCTGTCTC-ACAAGGACCACACGAAAGTCTGAGATATAAATTTATTAAGAATAT
*** * * ** *
10804709 A-AA-T-TTCAACATCTAAAATTGATA
65 ATAATTGTTCATTTTATCACTTTGGTA
* * *
10804733 AATCCATCAAGTC-GTCTCACTAGGACCACACCACACAAAGTCTGAGATATAAATTTATTAAGAA
1 AATTCATCAAGTCTGTCTCACAAGGA-C-CA-CAC-GAAAGTCTGAGATATAAATTTATTAAGAA
10804797 TATATAATTGTTCATTTTATCACTTTGGTA
62 TATATAATTGTTCATTTTATCACTTTGGTA
10804827 AATTCATCAAGTCTGTCTCAACAAGGACCAC-CGAAA
1 AATTCATCAAGTCTGTCTC-ACAAGGACCACACGAAA
10804863 TTTTGGGTTA
Statistics
Matches: 166, Mismatches: 35, Indels: 29
0.72 0.15 0.13
Matches are distributed among these distances:
84 6 0.04
85 6 0.04
86 26 0.16
87 2 0.01
88 3 0.02
89 9 0.05
90 47 0.28
91 24 0.14
92 3 0.02
93 2 0.01
94 26 0.16
95 6 0.04
96 6 0.04
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (91 bp):
AATTCATCAAGTCTGTCTCACAAGGACCACACGAAAGTCTGAGATATAAATTTATTAAGAATATA
TAATTGTTCATTTTATCACTTTGGTA
Found at i:10811194 original size:19 final size:19
Alignment explanation
Indices: 10811145--10811194 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
10811135 AGTCAACCTA
*
10811145 ACCTGACCCATTGACTTTG
1 ACCTGACCCGTTGACTTTG
* *
10811164 ACCCGACTCGTTGACTTTG
1 ACCTGACCCGTTGACTTTG
**
10811183 AGTTGACCCGTT
1 ACCTGACCCGTT
10811195 AATCGGTTTG
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.18, C:0.30, G:0.20, T:0.32
Consensus pattern (19 bp):
ACCTGACCCGTTGACTTTG
Found at i:10814122 original size:34 final size:35
Alignment explanation
Indices: 10814079--10814163 Score: 138
Period size: 37 Copynumber: 2.4 Consensus size: 35
10814069 AGAACCAACT
10814079 TCATAATTAAGTTAAG-TCCTCGTTACTACATCCA
1 TCATAATTAAGTTAAGATCCTCGTTACTACATCCA
10814113 TCATAATTAAGTTAAGAAATCCTCGTTACTACATCCA
1 TCATAATTAAGTTAAG--ATCCTCGTTACTACATCCA
10814150 TCATAATTAA-TTAA
1 TCATAATTAAGTTAA
10814164 ACAATTGTGA
Statistics
Matches: 48, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
34 16 0.33
36 4 0.08
37 28 0.58
ACGTcount: A:0.38, C:0.20, G:0.07, T:0.35
Consensus pattern (35 bp):
TCATAATTAAGTTAAGATCCTCGTTACTACATCCA
Found at i:10825152 original size:2 final size:2
Alignment explanation
Indices: 10825145--10825178 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
10825135 ATCCATTCAA
10825145 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10825179 CAAATAATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10826626 original size:20 final size:21
Alignment explanation
Indices: 10826603--10826643 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
10826593 AATGTCTTTG
10826603 TATTTAATAGTA-ATTTTCAA
1 TATTTAATAGTATATTTTCAA
* *
10826623 TATTTACTCGTATATTTTCAA
1 TATTTAATAGTATATTTTCAA
10826644 GTTTAAGGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.34, C:0.10, G:0.05, T:0.51
Consensus pattern (21 bp):
TATTTAATAGTATATTTTCAA
Found at i:10831617 original size:57 final size:58
Alignment explanation
Indices: 10831538--10831688 Score: 184
Period size: 57 Copynumber: 2.6 Consensus size: 58
10831528 CATTACTTTA
10831538 TTGAGTCCACT-GATTATTAAAAGTTACAAAATGGTCCATTAATTATAGGCCATTG-ATG
1 TTGAGTCC-CTCGATTATTAAAAGTTACAAAATGGTCCA-TAATTATAGGCCATTGTATG
* * ** *
10831596 -TGAGTCCCTCGATAATTAAAAGATACAAAATGGTCCATAATTATAGGGTATTGTTTTG
1 TTGAGTCCCTCGATTATTAAAAGTTACAAAATGGTCCATAATTATAGGCCATTG-TATG
* *
10831654 TTGAGT-CCTCGATTATTAAAAATTATAAAATGGTC
1 TTGAGTCCCTCGATTATTAAAAGTTACAAAATGGTC
10831689 ACTCGACTAT
Statistics
Matches: 80, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
56 16 0.20
57 32 0.40
58 27 0.34
59 5 0.06
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (58 bp):
TTGAGTCCCTCGATTATTAAAAGTTACAAAATGGTCCATAATTATAGGCCATTGTATG
Found at i:10835709 original size:18 final size:18
Alignment explanation
Indices: 10835681--10835722 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
10835671 AAATTTTTTC
10835681 AAATAATAATAT-ATAAAA
1 AAAT-ATAATATAATAAAA
10835699 TAAATATAATATAATAAAA
1 -AAATATAATATAATAAAA
10835718 AAATA
1 AAATA
10835723 ATTTTACCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (18 bp):
AAATATAATATAATAAAA
Found at i:10845849 original size:22 final size:22
Alignment explanation
Indices: 10845823--10845867 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
10845813 AAGAGAATCT
*
10845823 TTAGATACCTTAAGGACACTCC
1 TTAGATACCTTAAGAACACTCC
10845845 TTAGATACCTTAAGAACACTCC
1 TTAGATACCTTAAGAACACTCC
10845867 T
1 T
10845868 AGTTTAGGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.33, C:0.27, G:0.11, T:0.29
Consensus pattern (22 bp):
TTAGATACCTTAAGAACACTCC
Found at i:10851257 original size:16 final size:16
Alignment explanation
Indices: 10851231--10851263 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
10851221 AATAAAACAT
10851231 TAACAATAA-TTAAAA
1 TAACAATAATTTAAAA
10851246 TAACACATAATTTAAAA
1 TAACA-ATAATTTAAAA
10851263 T
1 T
10851264 TGTTACCGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 4 0.25
17 7 0.44
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (16 bp):
TAACAATAATTTAAAA
Found at i:10851389 original size:15 final size:15
Alignment explanation
Indices: 10851371--10851400 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
10851361 CAATAAAATT
10851371 TAATGAAATAATAAA
1 TAATGAAATAATAAA
*
10851386 TAATTAAATAATAAA
1 TAATGAAATAATAAA
10851401 AATAGTTTAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (15 bp):
TAATGAAATAATAAA
Found at i:10853718 original size:3 final size:3
Alignment explanation
Indices: 10853710--10853740 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
10853700 ATCATTTTCA
10853710 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
10853741 TTAATGAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:10859625 original size:34 final size:33
Alignment explanation
Indices: 10859575--10859656 Score: 89
Period size: 32 Copynumber: 2.5 Consensus size: 33
10859565 GCTCTATCGA
*
10859575 AAAAAAAGAGACAAAAAA-AACAAAACAGCA-GTTC
1 AAAAAAAGA-A-AAAAAAGAAAAAAACAG-ATGTTC
*
10859609 GAAAAAAAGAAAAAAAAGAAAAAAAGAGATGTTC
1 -AAAAAAAGAAAAAAAAGAAAAAAACAGATGTTC
10859643 -AAAAAAGAAAAAAA
1 AAAAAAAGAAAAAAA
10859657 GAAGAGAGAA
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
32 14 0.33
33 7 0.16
34 13 0.30
35 9 0.21
ACGTcount: A:0.73, C:0.07, G:0.13, T:0.06
Consensus pattern (33 bp):
AAAAAAAGAAAAAAAAGAAAAAAACAGATGTTC
Found at i:10859669 original size:23 final size:23
Alignment explanation
Indices: 10859619--10859670 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
10859609 GAAAAAAAGA
**
10859619 AAAAAAAGAAAAAAAGAGATGTT
1 AAAAAAAGAAAAAAAGAGATGAG
*
10859642 CAAAAAAGAAAAAAAGAAGA-GAG
1 AAAAAAAGAAAAAAAG-AGATGAG
10859665 AAAAAA
1 AAAAAA
10859671 GACATGAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
23 21 0.88
24 3 0.12
ACGTcount: A:0.75, C:0.02, G:0.17, T:0.06
Consensus pattern (23 bp):
AAAAAAAGAAAAAAAGAGATGAG
Found at i:10863669 original size:23 final size:23
Alignment explanation
Indices: 10863643--10863692 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
10863633 AAAACTTCAG
10863643 CCATGGCTTTTCGAATCCGAACA
1 CCATGGCTTTTCGAATCCGAACA
10863666 CCATGGCTTTTCGAATCCGAACA
1 CCATGGCTTTTCGAATCCGAACA
10863689 CCAT
1 CCAT
10863693 TGGAACTCCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (23 bp):
CCATGGCTTTTCGAATCCGAACA
Found at i:10865463 original size:15 final size:17
Alignment explanation
Indices: 10865432--10865463 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
10865422 CGGTGGGATT
10865432 TGAGACATATCAGAATC
1 TGAGACATATCAGAATC
10865449 TGAGA-ATAT-AGAATC
1 TGAGACATATCAGAATC
10865464 AGTGTAAAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 4 0.27
17 5 0.33
ACGTcount: A:0.44, C:0.12, G:0.19, T:0.25
Consensus pattern (17 bp):
TGAGACATATCAGAATC
Found at i:10874458 original size:106 final size:106
Alignment explanation
Indices: 10874272--10874585 Score: 493
Period size: 104 Copynumber: 3.0 Consensus size: 106
10874262 CATTGTTCAG
* * ** *
10874272 AGTCCAATATCCTCCGTCGTGAAGTTGAAATTGAATCTGA-A-T--GAAATT-TTGTTGACAAGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAGC
10874332 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGA
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGA
10874373 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAGC
*
10874438 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGG-
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGA
*
10874478 AGTCCAATATCC-TCGTTGTGAAGTTGAAATTGGCTCTGCGATTGGGAAGTTGTTGTTGACAAGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAGC
*
10874542 AGC-GTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCT-GA
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGA
10874581 AGTCC
1 AGTCC
10874586 GCGTCCCTTC
Statistics
Matches: 198, Mismatches: 9, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
101 36 0.18
102 2 0.01
103 38 0.19
104 54 0.27
105 17 0.09
106 51 0.26
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.32
Consensus pattern (106 bp):
AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAGC
AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGA
Found at i:10874590 original size:43 final size:43
Alignment explanation
Indices: 10874543--10874628 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
10874533 TTGACAAGCA
10874543 GCGTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTGAAGTCC
1 GCGTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTGAAGTCC
10874586 GCGTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTGAAGTCC
1 GCGTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTGAAGTCC
10874629 AATATCCTTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.16, C:0.26, G:0.26, T:0.33
Consensus pattern (43 bp):
GCGTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTGAAGTCC
Found at i:10874638 original size:43 final size:43
Alignment explanation
Indices: 10874546--10874652 Score: 153
Period size: 43 Copynumber: 2.5 Consensus size: 43
10874536 ACAAGCAGCG
**
10874546 TCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTGAAGTCCGCG
1 TCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTGAAGTCCGAA
10874589 TCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTGAAGTCC-AA
1 TCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTGAAGTCCGAA
* * *
10874631 TATCCTTCGTTGTGAAGTTGAA
1 T-CCCTTCATCGTGAAGTTGAA
10874653 ATTGGCTCTG
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
42 1 0.02
43 57 0.98
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (43 bp):
TCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTGAAGTCCGAA
Found at i:10874692 original size:147 final size:147
Alignment explanation
Indices: 10874442--10874726 Score: 491
Period size: 147 Copynumber: 1.9 Consensus size: 147
10874432 ACAAGCAGCG
* *
10874442 GTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGGAGTCCAATATCCTCGTTGTGAAGTTGAAA
1 GTCCCTTCATCGTGAAGTTGAACTTGCATTGTCTGAAGTCCAATATCCTCGTTGTGAAGTTGAAA
** *
10874507 TTGGCTCTGCGATTGGGAAGTTGTTGTTGACAAGCAGC-GTCCCTTCATCGTGAAGTTGAACTTG
66 TTGGCTCTGAAATTGAGAAGTTGTTGTTGACAAGCAGCGGTCCCTTCATCGTGAAGTTGAACTTG
10874571 CGTTGTCTGAAGTCCGC
131 CGTTGTCTGAAGTCCGC
*
10874588 GTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTGAAGTCCAATATCCTTCGTTGTGAAGTTGAA
1 GTCCCTTCATCGTGAAGTTGAACTTGCATTGTCTGAAGTCCAATATCC-TCGTTGTGAAGTTGAA
*
10874653 ATTGGCTCTGAAATTGAGAAGTTGTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAACTT
65 ATTGGCTCTGAAATTGAGAAGTTGTTGTTGACAAGCAGCGGTCCCTTCATCGTGAAGTTGAACTT
10874718 GCGTTGTCT
130 GCGTTGTCT
10874727 CGAGTGCCAC
Statistics
Matches: 130, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
146 45 0.35
147 52 0.40
148 33 0.25
ACGTcount: A:0.20, C:0.20, G:0.27, T:0.34
Consensus pattern (147 bp):
GTCCCTTCATCGTGAAGTTGAACTTGCATTGTCTGAAGTCCAATATCCTCGTTGTGAAGTTGAAA
TTGGCTCTGAAATTGAGAAGTTGTTGTTGACAAGCAGCGGTCCCTTCATCGTGAAGTTGAACTTG
CGTTGTCTGAAGTCCGC
Found at i:10875477 original size:66 final size:69
Alignment explanation
Indices: 10875361--10875490 Score: 176
Period size: 66 Copynumber: 1.9 Consensus size: 69
10875351 ATATATGTTG
* **
10875361 TTTCATGAGAAACGGTCTCAAGGGAAACAAAATTATGTTTTAAGGGAAATAAATTTGAAGATTTT
1 TTTCAAGAGAAACGGTCTCAAGGGAAACAAAATTATGTTTTAAGGGAAATAAATTCAAAGATTTT
10875426 GTGT
66 GTGT
* * * *
10875430 TTTCAAGAGTAACTGTCTCAA-GGAGAC-AAATT-TGTTTTAGGGGAAATAAATTCAAAGATTT
1 TTTCAAGAGAAACGGTCTCAAGGGAAACAAAATTATGTTTTAAGGGAAATAAATTCAAAGATTT
10875491 GTTTCAAGGG
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
66 26 0.48
67 5 0.09
68 5 0.09
69 18 0.33
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.33
Consensus pattern (69 bp):
TTTCAAGAGAAACGGTCTCAAGGGAAACAAAATTATGTTTTAAGGGAAATAAATTCAAAGATTTT
GTGT
Found at i:10875528 original size:62 final size:65
Alignment explanation
Indices: 10875361--10875511 Score: 173
Period size: 66 Copynumber: 2.3 Consensus size: 65
10875351 ATATATGTTG
* * * **
10875361 TTTCATGAGAAACGGTCTCAAGGGAAACAAAATTATGTTTTAAGGGAAATAAATTTGAAGATTTT
1 TTTCAAGAGAAACTGTCTCAA-GGAGAC-AAATT-TGTTTTAAGGGAAATAAATTCAAAGA-TTT
10875426 GTGT
62 GTGT
* *
10875430 TTTCAAGAGTAACTGTCTCAAGGAGACAAATTTGTTTTAGGGGAAATAAATTCAAAGA-TT-TG-
1 TTTCAAGAGAAACTGTCTCAAGGAGACAAATTTGTTTTAAGGGAAATAAATTCAAAGATTTGTGT
*
10875492 TTTCAAGGGAAACTGTCTCA
1 TTTCAAGAGAAACTGTCTCA
10875512 GATAGACGAA
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
62 18 0.25
63 2 0.03
64 2 0.03
66 23 0.32
67 5 0.07
68 5 0.07
69 18 0.25
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.32
Consensus pattern (65 bp):
TTTCAAGAGAAACTGTCTCAAGGAGACAAATTTGTTTTAAGGGAAATAAATTCAAAGATTTGTGT
Found at i:10875546 original size:15 final size:15
Alignment explanation
Indices: 10875494--10875550 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
10875484 AAGATTTGTT
*
10875494 TCAAGGGAAACTGTC
1 TCAAGAGAAACTGTC
* *
10875509 TCAGATAGACGAAATTGTT
1 TC--A-AGA-GAAACTGTC
10875528 TCAAGAGAAACTGTC
1 TCAAGAGAAACTGTC
10875543 TCAAGAGA
1 TCAAGAGA
10875551 GACAAACTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 17 0.52
16 3 0.09
17 2 0.06
18 2 0.06
19 9 0.27
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.23
Consensus pattern (15 bp):
TCAAGAGAAACTGTC
Found at i:10875611 original size:36 final size:35
Alignment explanation
Indices: 10875487--10875735 Score: 161
Period size: 36 Copynumber: 7.3 Consensus size: 35
10875477 AAATTCAAAG
* * *
10875487 ATTTGTTTCAAGGGAAACTGTCTC-AGATAGACGAA
1 ATTTGTTTCAAAGAAAACTGTCTCAAGAGAGAC-AA
10875522 A-TTGTTTC-AAGAGAAACTGTCTCAAGAGAGACAA
1 ATTTGTTTCAAAGA-AAACTGTCTCAAGAGAGACAA
* * *
10875556 ACTTAGTTCCAAA-AGAAACTGTCTCAAGGGAGACGAA
1 A-TTTGTTTCAAAGA-AAACTGTCTCAAGAGAGAC-AA
* *
10875593 ATTTGTTTCAAAGAAAACTAT-TC---A-A-A-TA
1 ATTTGTTTCAAAGAAAACTGTCTCAAGAGAGACAA
* * *
10875621 TTTTGTTTCAAGGGAAACTGTCTC-A-AGAGACAA
1 ATTTGTTTCAAAGAAAACTGTCTCAAGAGAGACAA
*
10875654 ATTTATTTC-AAGAGAAAC--TCTCAAGAGAGACAAA
1 ATTTGTTTCAAAGA-AAACTGTCTCAAGAGAGAC-AA
* * *
10875688 ATTTTGTTTCAAGGGAAACTATCTCAAGAGAGACGAA
1 A-TTTGTTTCAAAGAAAACTGTCTCAAGAGAGAC-AA
*
10875725 ATTTATTTCAA
1 ATTTGTTTCAA
10875736 GGGAAATGTT
Statistics
Matches: 169, Mismatches: 25, Indels: 39
0.73 0.11 0.17
Matches are distributed among these distances:
28 18 0.11
29 2 0.01
30 2 0.01
31 6 0.04
32 4 0.02
33 20 0.12
34 23 0.14
35 21 0.12
36 51 0.30
37 22 0.13
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (35 bp):
ATTTGTTTCAAAGAAAACTGTCTCAAGAGAGACAA
Found at i:10875642 original size:100 final size:97
Alignment explanation
Indices: 10875523--10875714 Score: 253
Period size: 100 Copynumber: 1.9 Consensus size: 97
10875513 ATAGACGAAA
*
10875523 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAACTTAGTTCCAAAAGAAACTGTCTCAAGGGAG
1 TTGTTTCAAGAGAAACTGTCTC-A-AGAGACAAACTTA-TTCCAAAAGAAAC--TCTCAAGAGAG
*
10875588 ACGAAA-TTTGTTTCAAAGAAAACTAT-TCAAATATT
61 ACAAAATTTTGTTTCAAAGAAAACTATCTCAAATATT
* * * *
10875623 TTGTTTCAAGGGAAACTGTCTCAAGAGACAAATTTATTTCAAGAGAAACTCTCAAGAGAGACAAA
1 TTGTTTCAAGAGAAACTGTCTCAAGAGACAAACTTATTCCAAAAGAAACTCTCAAGAGAGACAAA
* *
10875688 ATTTTGTTTCAAGGGAAACTATCTCAA
66 ATTTTGTTTCAAAGAAAACTATCTCAA
10875715 GAGAGACGAA
Statistics
Matches: 82, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
95 15 0.18
96 18 0.22
97 15 0.18
98 12 0.15
99 1 0.01
100 21 0.26
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (97 bp):
TTGTTTCAAGAGAAACTGTCTCAAGAGACAAACTTATTCCAAAAGAAACTCTCAAGAGAGACAAA
ATTTTGTTTCAAAGAAAACTATCTCAAATATT
Found at i:10875706 original size:35 final size:35
Alignment explanation
Indices: 10875626--10875741 Score: 150
Period size: 33 Copynumber: 3.3 Consensus size: 35
10875616 AAATATTTTG
10875626 TTTCAAGGGAAACTGTCTC-A-AGAGAC-AAATTTA
1 TTTCAAGGGAAACT-TCTCAAGAGAGACAAAATTTA
* *
10875659 TTTCAAGAGAAAC-TCTCAAGAGAGACAAAATTTTG
1 TTTCAAGGGAAACTTCTCAAGAGAGACAAAA-TTTA
*
10875694 TTTCAAGGGAAACTATCTCAAGAGAGACGAAATTTA
1 TTTCAAGGGAAACT-TCTCAAGAGAGACAAAATTTA
10875730 TTTCAAGGGAAA
1 TTTCAAGGGAAA
10875742 TGTTTTCAAT
Statistics
Matches: 72, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
31 4 0.06
32 1 0.01
33 18 0.25
34 3 0.04
35 15 0.21
36 15 0.21
37 16 0.22
ACGTcount: A:0.41, C:0.14, G:0.19, T:0.26
Consensus pattern (35 bp):
TTTCAAGGGAAACTTCTCAAGAGAGACAAAATTTA
Found at i:10875734 original size:132 final size:133
Alignment explanation
Indices: 10875479--10875782 Score: 375
Period size: 132 Copynumber: 2.3 Consensus size: 133
10875469 GGGGAAATAA
* * *
10875479 ATTCAAAGA-TTTGTTTCAAGGGAAACTGTCTCAGATAGACGAAATTGTTTCAAGAGAAACTGTC
1 ATTCAAATATTTTGTTTCAAGGGAAACTGTCTCA-AGAGACGAAATTATTTCAAGAGAAAC-GTC
* * *
10875543 TCAAGAGAGACAAACTTAGTTCCAAAAGAAACTGTCTCAAGGGAGACGAAATTTGTTTCAA-AGA
64 TCAAGAGAGACAAACTTAGTTCCAAAAGAAACTATCTCAAGAGAGACGAAATTTATTTCAAGAGA
10875607 AAACT
129 AAACT
10875612 ATTCAAATATTTTGTTTCAAGGGAAACTGTCTCAAGAGAC-AAATTTATTTCAAGAGAAAC-TCT
1 ATTCAAATATTTTGTTTCAAGGGAAACTGTCTCAAGAGACGAAA-TTATTTCAAGAGAAACGTCT
* * * ** *
10875675 CAAGAGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAGACGAAATTTATTTCAAGGGA
65 CAAGAGAGAC-AAACTTAGTTCCAAAAGAAACTATCTCAAGAGAGACGAAATTTATTTCAAGAGA
**
10875740 AATGT
129 AAACT
* * * *
10875745 TTTC-AATGTTTAGTTTCAAGAGAAACTGTCTCAAGAGA
1 ATTCAAATATTTTGTTTCAAGGGAAACTGTCTCAAGAGA
10875783 GACAAATCTT
Statistics
Matches: 149, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
131 13 0.09
132 76 0.51
133 36 0.24
134 24 0.16
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (133 bp):
ATTCAAATATTTTGTTTCAAGGGAAACTGTCTCAAGAGACGAAATTATTTCAAGAGAAACGTCTC
AAGAGAGACAAACTTAGTTCCAAAAGAAACTATCTCAAGAGAGACGAAATTTATTTCAAGAGAAA
ACT
Found at i:10875778 original size:28 final size:27
Alignment explanation
Indices: 10875726--10875778 Score: 63
Period size: 28 Copynumber: 1.9 Consensus size: 27
10875716 AGAGACGAAA
* *
10875726 TTTATTTCAAGGGAAATGTTTTCAATG
1 TTTATTTCAAGAGAAATGTTCTCAATG
10875753 TTTAGTTTCAAGAGAAACTG-TCTCAA
1 TTTA-TTTCAAGAGAAA-TGTTCTCAA
10875779 GAGAGACAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
27 4 0.18
28 16 0.73
29 2 0.09
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (27 bp):
TTTATTTCAAGAGAAATGTTCTCAATG
Found at i:10876253 original size:17 final size:17
Alignment explanation
Indices: 10876228--10876261 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
10876218 GTTGACTCCC
*
10876228 CAAATATGCCCCAATAT
1 CAAAAATGCCCCAATAT
10876245 CAAAAATGCCCCAATAT
1 CAAAAATGCCCCAATAT
10876262 TTGATGTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.29, G:0.06, T:0.21
Consensus pattern (17 bp):
CAAAAATGCCCCAATAT
Found at i:10876534 original size:22 final size:22
Alignment explanation
Indices: 10876509--10876552 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
10876499 ACATTTTGTT
10876509 CATTTGATGCT-AAATGGTTTGA
1 CATTTGATGCTCAAA-GGTTTGA
10876531 CATTTGATGCTCAAAGGTTTGA
1 CATTTGATGCTCAAAGGTTTGA
10876553 TGGGGTAGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 18 0.86
23 3 0.14
ACGTcount: A:0.27, C:0.11, G:0.23, T:0.39
Consensus pattern (22 bp):
CATTTGATGCTCAAAGGTTTGA
Found at i:10877173 original size:11 final size:10
Alignment explanation
Indices: 10877150--10877200 Score: 61
Period size: 9 Copynumber: 5.2 Consensus size: 10
10877140 TCCCTTTTTC
10877150 TTTTTTC-TT
1 TTTTTTCTTT
*
10877159 TTTGTTC-TT
1 TTTTTTCTTT
*
10877168 TTTTTGCTTT
1 TTTTTTCTTT
10877178 TTTTTTGCTTT
1 TTTTTT-CTTT
10877189 TTTTTTCTTT
1 TTTTTTCTTT
10877199 TT
1 TT
10877201 GCCCTTTTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
9 13 0.36
10 13 0.36
11 10 0.28
ACGTcount: A:0.00, C:0.10, G:0.06, T:0.84
Consensus pattern (10 bp):
TTTTTTCTTT
Found at i:10877192 original size:9 final size:8
Alignment explanation
Indices: 10877144--10877181 Score: 51
Period size: 9 Copynumber: 4.6 Consensus size: 8
10877134 TTTTTGTCCC
10877144 TTTTTC-T
1 TTTTTCTT
10877151 TTTTTCTT
1 TTTTTCTT
10877159 TTTGTTCTT
1 TTT-TTCTT
10877168 TTTTTGCTT
1 TTTTT-CTT
10877177 TTTTT
1 TTTTT
10877182 TTGCTTTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 6 0.21
8 6 0.21
9 16 0.57
ACGTcount: A:0.00, C:0.11, G:0.05, T:0.84
Consensus pattern (8 bp):
TTTTTCTT
Found at i:10878315 original size:8 final size:7
Alignment explanation
Indices: 10878279--10878315 Score: 56
Period size: 7 Copynumber: 5.1 Consensus size: 7
10878269 ATTGTAGATG
10878279 AAAATGC
1 AAAATGC
*
10878286 AAAAGGC
1 AAAATGC
10878293 AAAATGC
1 AAAATGC
10878300 AAAATGC
1 AAAATGC
10878307 AAGAATGC
1 AA-AATGC
10878315 A
1 A
10878316 TGAAATGTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
7 21 0.78
8 6 0.22
ACGTcount: A:0.57, C:0.14, G:0.19, T:0.11
Consensus pattern (7 bp):
AAAATGC
Found at i:10881285 original size:9 final size:9
Alignment explanation
Indices: 10881271--10881304 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
10881261 TAAAAGGGAA
10881271 AAATAAAAT
1 AAATAAAAT
10881280 AAATAAAAT
1 AAATAAAAT
10881289 AAAT-AAAT
1 AAATAAAAT
10881297 AAGATAAA
1 AA-ATAAA
10881305 GGAAAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 6 0.26
9 15 0.65
10 2 0.09
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (9 bp):
AAATAAAAT
Found at i:10881363 original size:2 final size:2
Alignment explanation
Indices: 10881356--10881380 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
10881346 AAAAGGAAAA
10881356 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
10881381 CATCAAAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10895799 original size:17 final size:17
Alignment explanation
Indices: 10895766--10895799 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
10895756 GACTCTTTTT
* *
10895766 CATAAATAAATATATTA
1 CATAAATAAAAAAATTA
10895783 CATAAATAAAAAAATTA
1 CATAAATAAAAAAATTA
10895800 AGAAAACATG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (17 bp):
CATAAATAAAAAAATTA
Found at i:10897012 original size:2 final size:2
Alignment explanation
Indices: 10897005--10897029 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
10896995 CTCATGGATG
10897005 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
10897030 ATTCACCTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10897108 original size:26 final size:28
Alignment explanation
Indices: 10897078--10897133 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 28
10897068 ATTATAATTA
*
10897078 TAAAATATAATAA-TTAAT-ATTATTTT
1 TAAAATATAATAATTTAATCAATATTTT
*
10897104 TAAAATATTATAATTTAATCAATATTTT
1 TAAAATATAATAATTTAATCAATATTTT
10897132 TA
1 TA
10897134 TGAAAAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 12 0.46
27 5 0.19
28 9 0.35
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (28 bp):
TAAAATATAATAATTTAATCAATATTTT
Found at i:10902273 original size:22 final size:23
Alignment explanation
Indices: 10902218--10902277 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
10902208 CTCAATAAAG
10902218 ATCATAAATTAAAATATAAAAACTA
1 ATCAT-AATTAAAA-ATAAAAACTA
*
10902243 ATCAT--TTAAAAA-AAAAATTA
1 ATCATAATTAAAAATAAAAACTA
10902263 ATCATAATTAAAAAT
1 ATCATAATTAAAAAT
10902278 TAAATGATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
20 12 0.39
21 1 0.03
22 13 0.42
25 5 0.16
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (23 bp):
ATCATAATTAAAAATAAAAACTA
Found at i:10903616 original size:12 final size:12
Alignment explanation
Indices: 10903599--10903623 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10903589 AATTGAAAAT
10903599 TGTTAATTTAAA
1 TGTTAATTTAAA
10903611 TGTTAATTTAAA
1 TGTTAATTTAAA
10903623 T
1 T
10903624 TATGTTCCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TGTTAATTTAAA
Found at i:10916029 original size:22 final size:21
Alignment explanation
Indices: 10916004--10916046 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
10915994 TAGGTTGATT
10916004 TTAAAATATAAACATATAAATA
1 TTAAAATATAAACATA-AAATA
* * *
10916026 TTAAGATTTAAACCTAAAATA
1 TTAAAATATAAACATAAAATA
10916047 ATATCAAGTG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.58, C:0.07, G:0.02, T:0.33
Consensus pattern (21 bp):
TTAAAATATAAACATAAAATA
Found at i:10917689 original size:120 final size:120
Alignment explanation
Indices: 10917473--10917690 Score: 337
Period size: 120 Copynumber: 1.8 Consensus size: 120
10917463 TAAAGAGTGG
* * * *
10917473 CAGAGTAGATCCCATGTCTAGATTTGATTTTCCCTGAAGAGCAGTGGAGTAAATCTACCTCGATT
1 CAGAGCAGATCCCATGTCCAGATTTGATCTTACCTGAAGAGCAGTGGAGTAAATCTACCTCGATT
* * * *
10917538 CAATCTTCCCCGAAAAGCAGTGAAGTGAATCAATGTCTTTAGATCTGATCTTCAC
66 CAATCTTCCCCAAAAAACAATGAAGTAAATCAATGTCTTTAGATCTGATCTTCAC
*
10917593 CAGAGCAGATCCCATGTCCAGATTTGATCTTACCTGAAGAGCATTGGAGTAAATCTACCTCGATT
1 CAGAGCAGATCCCATGTCCAGATTTGATCTTACCTGAAGAGCAGTGGAGTAAATCTACCTCGATT
* *
10917658 TAATCTTCCCTAAAAAACAATGAAGTAAATCAA
66 CAATCTTCCCCAAAAAACAATGAAGTAAATCAA
10917691 AGTTTGTAGA
Statistics
Matches: 87, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
120 87 1.00
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (120 bp):
CAGAGCAGATCCCATGTCCAGATTTGATCTTACCTGAAGAGCAGTGGAGTAAATCTACCTCGATT
CAATCTTCCCCAAAAAACAATGAAGTAAATCAATGTCTTTAGATCTGATCTTCAC
Found at i:10921065 original size:21 final size:21
Alignment explanation
Indices: 10921019--10921065 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
10921009 GGTAAACTTC
* *
10921019 CATTATCTGGTTCTTTCTTTA
1 CATTATCTGGTTCTTTCGTAA
*
10921040 TATTAT-TGGTTGCTTTCGTAA
1 CATTATCTGGTT-CTTTCGTAA
10921061 CATTA
1 CATTA
10921066 AGTGATATGT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.19, C:0.15, G:0.13, T:0.53
Consensus pattern (21 bp):
CATTATCTGGTTCTTTCGTAA
Found at i:10921770 original size:95 final size:96
Alignment explanation
Indices: 10921547--10921770 Score: 274
Period size: 96 Copynumber: 2.3 Consensus size: 96
10921537 TATCGAAAAG
* * **** *
10921547 GTAGTATTGATACCATGATAAGGGTATCTATACCACTTTACATCGAATCTAAAATGGGTATCGAT
1 GTAGTATCGATACCATGATAAGGGTATCGATACCAAGCAACATCGAATCTAAAATGGGTATCAAT
* *
10921612 ACTGGAAGAGGTATCGGTACCATACTATATA
66 ACTAGAAGAGGTATCAGTACCATACTATATA
* * *
10921643 ATAGTATCGATACCATGGTAAGGGTATCGATACCAAGCAACATCGAATC-AAAAGTTGGTATCAA
1 GTAGTATCGATACCATGATAAGGGTATCGATACCAAGCAACATCGAATCTAAAA-TGGGTATCAA
*
10921707 TACTAGAAGGGGGTATCAGTACCATA-TA-ATA
65 TACTAGAA-GAGGTATCAGTACCATACTATATA
* *
10921738 GTAGTATCAATACCATGATAGGGGTATCGATAC
1 GTAGTATCGATACCATGATAAGGGTATCGATAC
10921771 TATAGGACCA
Statistics
Matches: 109, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
95 36 0.33
96 58 0.53
97 15 0.14
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (96 bp):
GTAGTATCGATACCATGATAAGGGTATCGATACCAAGCAACATCGAATCTAAAATGGGTATCAAT
ACTAGAAGAGGTATCAGTACCATACTATATA
Found at i:10922173 original size:57 final size:57
Alignment explanation
Indices: 10922112--10922709 Score: 862
Period size: 57 Copynumber: 10.5 Consensus size: 57
10922102 GTGCAAAATA
10922112 TAAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGT
1 TAAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGT
* * *
10922169 TAAGAAATCGTACTAAGTGTATAAATTTCAGATAGGGCGTTTCGTACACTAAAATGT
1 TAAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGT
* *
10922226 TAAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCATTTCGTATGCTAAAATGT
1 TAAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGT
* * *
10922283 TAAGAAATCATACTAAGTGTATGAATTTCAGATAGGGTGTTTCGTATGTTAAAATGT
1 TAAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGT
* *
10922340 TAAGAAATCATACTAAGTGTATGAATTTCAGATAGGGTGTTTCGTATGCTAAAATGT
1 TAAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGT
* * *
10922397 TAAGAAATCATACTAAGTGTATGAATTTCAGTTA-GGCATTTCGTATGCTAAAATGT
1 TAAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGT
* * *
10922453 TAAGAAATCATACTAAGTGTATGAATTTTAGATAGGGCATTTCGTACGATAAAATGT
1 TAAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGT
* * * *
10922510 TAAGAAATCATACTAAGTGTATGAATTTCAGACA-GGCGTTTTGTACACT-AAATAT
1 TAAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGT
* *
10922565 TAAGAAATCATACTAAGTGTATGAATTTCAGATAGGGTGTTTCGTACGCTAAAATGA
1 TAAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGT
* ** * ** * *
10922622 TAAGGAAATCATACTAAGTGTATCAATTTCCAG-TAGGGCACTTCATGTGCTAACATGA
1 TAA-GAAATCATACTAAGTGTATGAATTT-CAGATAGGGCGTTTCGTACGCTAAAATGT
*
10922680 TAAGAAATTCATACTAAGTGTATAAATTTC
1 TAAGAAA-TCATACTAAGTGTATGAATTTC
10922710 TAAATTGGAC
Statistics
Matches: 494, Mismatches: 41, Indels: 12
0.90 0.07 0.02
Matches are distributed among these distances:
55 38 0.08
56 75 0.15
57 313 0.63
58 65 0.13
59 3 0.01
ACGTcount: A:0.37, C:0.11, G:0.19, T:0.33
Consensus pattern (57 bp):
TAAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGT
Found at i:10923412 original size:45 final size:45
Alignment explanation
Indices: 10923361--10923475 Score: 149
Period size: 45 Copynumber: 2.6 Consensus size: 45
10923351 GCATAATTGT
* * * *
10923361 ATGAAAGGATGCCATAAATGAAATGTATAATAGTGTATCAAAGGC
1 ATGAAAGGATGACATAAATGAAATGTATAATAGTGAATAAAAGAC
* * *
10923406 ATGAAAGGATGACATAAATAAAAGGTATAATAGTGAATAAAAGAT
1 ATGAAAGGATGACATAAATGAAATGTATAATAGTGAATAAAAGAC
* *
10923451 ATGTAAGGATGACATAATTGAAATG
1 ATGAAAGGATGACATAAATGAAATG
10923476 CATATAGGTA
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 59 1.00
ACGTcount: A:0.49, C:0.05, G:0.22, T:0.24
Consensus pattern (45 bp):
ATGAAAGGATGACATAAATGAAATGTATAATAGTGAATAAAAGAC
Found at i:10924016 original size:21 final size:22
Alignment explanation
Indices: 10923970--10924014 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
10923960 TATTTTGTGG
10923970 TTAATCAAATTAAACAAAATTT
1 TTAATCAAATTAAACAAAATTT
10923992 TTAATCAAATTAAACAAAATTT
1 TTAATCAAATTAAACAAAATTT
10924014 T
1 T
10924015 AAGGGTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (22 bp):
TTAATCAAATTAAACAAAATTT
Found at i:10926839 original size:19 final size:20
Alignment explanation
Indices: 10926815--10926885 Score: 72
Period size: 22 Copynumber: 3.5 Consensus size: 20
10926805 TCAAAAATTG
10926815 GTATCGATACCAT-AAAGGA
1 GTATCGATACCATAAAAGGA
* *
10926834 GTATCGGTACCATAATATAGTA
1 GTATCGATACCATAA-A-AGGA
* * *
10926856 GTATCGATACCATGATAGGG
1 GTATCGATACCATAAAAGGA
10926876 GTATCGATAC
1 GTATCGATAC
10926886 TATAGGGCCA
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
19 12 0.29
20 13 0.31
21 1 0.02
22 16 0.38
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (20 bp):
GTATCGATACCATAAAAGGA
Found at i:10926883 original size:95 final size:97
Alignment explanation
Indices: 10926662--10926885 Score: 294
Period size: 96 Copynumber: 2.3 Consensus size: 97
10926652 TACCGACAAG
* * * *
10926662 GTAGTATCGATACCATGGTAAGGGTATCAATA-CTAGTCTACATCGAATCTAAAATGGGTATCGA
1 GTAGTATCGATACCATGGTAAGGGTATCGATACCAAGTCAACATCGAATCAAAAATGGGTATCGA
* *
10926726 TACCGGAAGGGGTATCGATACCATAATATATA
66 TACCGAAAGGAGTATCGATACCATAATATATA
* * *
10926758 GTGGTATCGATACTATGGTAAGGGTATCGATACCAAG-CAACATCGAATCAAAAATTGGTATCGA
1 GTAGTATCGATACCATGGTAAGGGTATCGATACCAAGTCAACATCGAATCAAAAATGGGTATCGA
* *
10926822 TACCATAAAGGAGTATCGGTACCAT-A-ATATA
66 TACC-GAAAGGAGTATCGATACCATAATATATA
* *
10926853 GTAGTATCGATACCATGATAGGGGTATCGATAC
1 GTAGTATCGATACCATGGTAAGGGTATCGATAC
10926886 TATAGGGCCA
Statistics
Matches: 111, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
95 34 0.31
96 58 0.52
97 19 0.17
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (97 bp):
GTAGTATCGATACCATGGTAAGGGTATCGATACCAAGTCAACATCGAATCAAAAATGGGTATCGA
TACCGAAAGGAGTATCGATACCATAATATATA
Found at i:10927288 original size:57 final size:57
Alignment explanation
Indices: 10927227--10927711 Score: 846
Period size: 57 Copynumber: 8.5 Consensus size: 57
10927217 GTGCAAAATA
*
10927227 TAAGAAGTCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGT
1 TAAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGT
* *
10927284 TAAGAAATCATACTAAGTGTATGAATTTCAGACAGGGCATTTCGTACGCTAAAATGT
1 TAAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGT
* *
10927341 TAACAAATCATACTAAGTGTATGAATTTCAGATAGGGCATTTCGTACGCTAAAATGT
1 TAAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGT
*
10927398 TAACAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGT
1 TAAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGT
* *
10927455 TAAGAAATCATACAAAGTGTATGAATTTCAGATAGGGCGTTTTGTACGCTAAAATG-
1 TAAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGT
10927511 TAAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGT
1 TAAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGT
* *
10927568 TAAGAAATCATACTAAGTGTATGAATTTCAGATAGTGCATTTCGTACGCTAAAATGT
1 TAAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGT
*
10927625 TAAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGA
1 TAAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGT
*
10927682 TAAGGAAATCATACTATGTGTATGAATTTC
1 TAA-GAAATCATACTAAGTGTATGAATTTC
10927712 CGTATGGGAA
Statistics
Matches: 409, Mismatches: 17, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
56 54 0.13
57 330 0.81
58 25 0.06
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.32
Consensus pattern (57 bp):
TAAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGT
Found at i:10927637 original size:227 final size:228
Alignment explanation
Indices: 10927221--10927711 Score: 869
Period size: 227 Copynumber: 2.2 Consensus size: 228
10927211 CTAAGTGTGC
*
10927221 AAAAT-ATAAGAAGTCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGTT
1 AAAATGATAAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGTT
10927285 AAGAAATCATACTAAGTGTATGAATTTCAGACAGGGCATTTCGTACGCTAAAATGTTAACAAATC
66 AAGAAATCATACTAAGTGTATGAATTTCAGACAGGGCATTTCGTACGCTAAAATGTTAACAAATC
10927350 ATACTAAGTGTATGAATTTCAGATAGGGCATTTCGTACGCTAAAATGTTAACAAATCATACTAAG
131 ATACTAAGTGTATGAATTTCAGATAGGGCATTTCGTACGCTAAAATGTTAACAAATCATACTAAG
10927415 TGTATGAATTTCAGATAGGGCGTTTCGTACGCT
196 TGTATGAATTTCAGATAGGGCGTTTCGTACGCT
* * *
10927448 AAAATGTTAAGAAATCATACAAAGTGTATGAATTTCAGATAGGGCGTTTTGTACGCTAAAATG-T
1 AAAATGATAAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGTT
* * *
10927512 AAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGTTAAGAAATC
66 AAGAAATCATACTAAGTGTATGAATTTCAGACAGGGCATTTCGTACGCTAAAATGTTAACAAATC
* *
10927577 ATACTAAGTGTATGAATTTCAGATAGTGCATTTCGTACGCTAAAATGTTAAGAAATCATACTAAG
131 ATACTAAGTGTATGAATTTCAGATAGGGCATTTCGTACGCTAAAATGTTAACAAATCATACTAAG
10927642 TGTATGAATTTCAGATAGGGCGTTTCGTACGCT
196 TGTATGAATTTCAGATAGGGCGTTTCGTACGCT
*
10927675 AAAATGATAAGGAAATCATACTATGTGTATGAATTTC
1 AAAATGATAA-GAAATCATACTAAGTGTATGAATTTC
10927712 CGTATGGGAA
Statistics
Matches: 250, Mismatches: 12, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
227 173 0.69
228 77 0.31
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (228 bp):
AAAATGATAAGAAATCATACTAAGTGTATGAATTTCAGATAGGGCGTTTCGTACGCTAAAATGTT
AAGAAATCATACTAAGTGTATGAATTTCAGACAGGGCATTTCGTACGCTAAAATGTTAACAAATC
ATACTAAGTGTATGAATTTCAGATAGGGCATTTCGTACGCTAAAATGTTAACAAATCATACTAAG
TGTATGAATTTCAGATAGGGCGTTTCGTACGCT
Found at i:10928401 original size:45 final size:45
Alignment explanation
Indices: 10928305--10928409 Score: 120
Period size: 45 Copynumber: 2.3 Consensus size: 45
10928295 ATAATTGTAT
* * * * * * *
10928305 GAAAGGATGCCATACATGAAATGTATAATAGTGTATCAATGGCAT
1 GAAAGGATGCCATAAATGAAAGGTATAATAGTGAATAAAAGACAG
*
10928350 GAAAGGATGCCATAAATGAAAGGTATAATAGTGAATAAAAGATAG
1 GAAAGGATGCCATAAATGAAAGGTATAATAGTGAATAAAAGACAG
* *
10928395 GTAAGGATGACATAA
1 GAAAGGATGCCATAA
10928410 TTGATATGCA
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 50 1.00
ACGTcount: A:0.46, C:0.08, G:0.24, T:0.23
Consensus pattern (45 bp):
GAAAGGATGCCATAAATGAAAGGTATAATAGTGAATAAAAGACAG
Found at i:10932266 original size:52 final size:52
Alignment explanation
Indices: 10932203--10932323 Score: 190
Period size: 52 Copynumber: 2.3 Consensus size: 52
10932193 AAAATACTAC
* *
10932203 CTCTCGATGCTCTTAGATTGCCAAGT-CATGTTTTACCAAAACCCCATGCGAT
1 CTCTCGATGCTCTTACATTGCCAA-TACATGTTTTACCAAAACCCCAGGCGAT
* *
10932255 CTCTCAATGCTCTTACATTGCCAATACATGTTTTACCAAAACCCCAGGTGAT
1 CTCTCGATGCTCTTACATTGCCAATACATGTTTTACCAAAACCCCAGGCGAT
10932307 CTCTCGATGCTCTTACA
1 CTCTCGATGCTCTTACA
10932324 ACGTTAAGGT
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
51 1 0.02
52 62 0.98
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (52 bp):
CTCTCGATGCTCTTACATTGCCAATACATGTTTTACCAAAACCCCAGGCGAT
Found at i:10938642 original size:16 final size:16
Alignment explanation
Indices: 10938621--10938653 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
10938611 TAATAAATAG
10938621 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
10938637 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
10938653 A
1 A
10938654 AAATTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.58, C:0.24, G:0.12, T:0.06
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:10938734 original size:10 final size:10
Alignment explanation
Indices: 10938719--10938809 Score: 65
Period size: 10 Copynumber: 9.7 Consensus size: 10
10938709 CATTTAATAA
10938719 ATAAACGAAC
1 ATAAACGAAC
10938729 ATAAACGAAC
1 ATAAACGAAC
10938739 ----ACGAAC
1 ATAAACGAAC
10938745 ATAAACGAAC
1 ATAAACGAAC
10938755 ----ACGAAC
1 ATAAACGAAC
10938761 ATAAACGAAC
1 ATAAACGAAC
** *
10938771 ACGAAC-ATAA
1 ATAAACGA-AC
10938781 ATGAACACGAAC
1 AT-AA-ACGAAC
10938793 ATAAACGAAC
1 ATAAACGAAC
10938803 ATAAACG
1 ATAAACG
10938810 TTGGAGACCC
Statistics
Matches: 63, Mismatches: 6, Indels: 24
0.68 0.06 0.26
Matches are distributed among these distances:
6 12 0.19
9 1 0.02
10 41 0.65
11 3 0.05
12 5 0.08
13 1 0.02
ACGTcount: A:0.57, C:0.22, G:0.12, T:0.09
Consensus pattern (10 bp):
ATAAACGAAC
Found at i:10938744 original size:16 final size:16
Alignment explanation
Indices: 10938723--10938803 Score: 153
Period size: 16 Copynumber: 5.1 Consensus size: 16
10938713 TAATAAATAA
10938723 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
10938739 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
10938755 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
*
10938771 ACGAACATAAATGAAC
1 ACGAACATAAACGAAC
10938787 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
10938803 A
1 A
10938804 TAAACGTTGG
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 63 1.00
ACGTcount: A:0.57, C:0.23, G:0.12, T:0.07
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:10939573 original size:14 final size:13
Alignment explanation
Indices: 10939556--10939611 Score: 64
Period size: 14 Copynumber: 4.3 Consensus size: 13
10939546 AATGAACATA
10939556 AACGAACATAATCG
1 AACGAACATAA-CG
10939570 AACGAACAT-A--
1 AACGAACATAACG
10939580 AACGAACATAACTG
1 AACGAACATAAC-G
10939594 AACGAACATAACCG
1 AACGAACATAA-CG
10939608 AACG
1 AACG
10939612 TTCACGAACG
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
10 9 0.24
11 1 0.03
13 1 0.03
14 25 0.68
15 1 0.03
ACGTcount: A:0.52, C:0.23, G:0.14, T:0.11
Consensus pattern (13 bp):
AACGAACATAACG
Found at i:10939576 original size:24 final size:24
Alignment explanation
Indices: 10939536--10939610 Score: 100
Period size: 24 Copynumber: 3.1 Consensus size: 24
10939526 GATTGGGTTA
*
10939536 AACATAAAT-GAATGAACATAAACG
1 AACAT-AATCGAACGAACATAAACG
10939560 AACATAATCGAACGAACATAAACG
1 AACATAATCGAACGAACATAAACG
*
10939584 AACATAA-CTGAACGAACATAACCG
1 AACATAATC-GAACGAACATAAACG
10939608 AAC
1 AAC
10939611 GTTCACGAAC
Statistics
Matches: 47, Mismatches: 2, Indels: 4
0.89 0.04 0.08
Matches are distributed among these distances:
23 4 0.09
24 43 0.91
ACGTcount: A:0.55, C:0.20, G:0.12, T:0.13
Consensus pattern (24 bp):
AACATAATCGAACGAACATAAACG
Found at i:10939620 original size:24 final size:24
Alignment explanation
Indices: 10939549--10939636 Score: 101
Period size: 24 Copynumber: 3.7 Consensus size: 24
10939539 ATAAATGAAT
10939549 GAACATAAACGAAC-ATAATCGAAC
1 GAACATAAACGAACGATAA-CGAAC
10939573 GAACATAAACGAAC-ATAACTGAAC
1 GAACATAAACGAACGATAAC-GAAC
* * *
10939597 GAACATAACCGAACGTTCACGAAC
1 GAACATAAACGAACGATAACGAAC
10939621 GTAA-ATAAACGAACGA
1 G-AACATAAACGAACGA
10939637 GACCTATGTT
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
23 1 0.02
24 50 0.89
25 5 0.09
ACGTcount: A:0.51, C:0.22, G:0.15, T:0.12
Consensus pattern (24 bp):
GAACATAAACGAACGATAACGAAC
Found at i:10950860 original size:101 final size:101
Alignment explanation
Indices: 10950682--10950867 Score: 257
Period size: 101 Copynumber: 1.8 Consensus size: 101
10950672 TCATCTACAA
** * *
10950682 TTTCTTTGACCTGAATATAGAGATGCCCTCAACACAACAATCTGTTCAATACCCATTTGACACGA
1 TTTCTTTGACCTGAATATAGAGATGCCCTCAACACAACAATCAATTCAAAACCCATATGACACGA
*
10950747 TGCCTTCAAGTTCCAGGGGATGCATTTAACTGCGAG
66 TGCCTTCAAGTTCAAGGGGATGCATTTAACTGCGAG
* * * *
10950783 TTTCTTTGACCTTAATATAGAGATG-CCTGCGACACAACACTCAATTCAAAACCCCTATGACACG
1 TTTCTTTGACCTGAATATAGAGATGCCCT-CAACACAACAATCAATTCAAAACCCATATGACACG
* *
10950847 ATGTCTTCCAGTTCAAGGGGA
65 ATGCCTTCAAGTTCAAGGGGA
10950868 AGGCATTCAA
Statistics
Matches: 73, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
100 3 0.04
101 70 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (101 bp):
TTTCTTTGACCTGAATATAGAGATGCCCTCAACACAACAATCAATTCAAAACCCATATGACACGA
TGCCTTCAAGTTCAAGGGGATGCATTTAACTGCGAG
Found at i:10953359 original size:18 final size:18
Alignment explanation
Indices: 10953336--10953372 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
10953326 AGTGGGTGAA
*
10953336 TGATTCAATAAAGGCGAT
1 TGATTCAATAAAGGAGAT
10953354 TGATTCAATAAAGGAGAT
1 TGATTCAATAAAGGAGAT
10953372 T
1 T
10953373 CTTGATCAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.30
Consensus pattern (18 bp):
TGATTCAATAAAGGAGAT
Found at i:10953537 original size:28 final size:28
Alignment explanation
Indices: 10953502--10953568 Score: 116
Period size: 28 Copynumber: 2.4 Consensus size: 28
10953492 AAAAAATGTT
10953502 TTAAATATATGTATGAATTTAAGTTTAG
1 TTAAATATATGTATGAATTTAAGTTTAG
* *
10953530 TTAAATATACGTATGAATTTGAGTTTAG
1 TTAAATATATGTATGAATTTAAGTTTAG
10953558 TTAAATATATG
1 TTAAATATATG
10953569 GTTATTGATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.39, C:0.01, G:0.15, T:0.45
Consensus pattern (28 bp):
TTAAATATATGTATGAATTTAAGTTTAG
Found at i:10955940 original size:22 final size:22
Alignment explanation
Indices: 10955915--10955968 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
10955905 TCGTTGATCA
10955915 TTGATCGGTCAAACCATTGACT
1 TTGATCGGTCAAACCATTGACT
* * **
10955937 TTGATCGATCATACTGTTGACT
1 TTGATCGGTCAAACCATTGACT
10955959 TTGATCGGTC
1 TTGATCGGTC
10955969 TGACTGTTGA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.37
Consensus pattern (22 bp):
TTGATCGGTCAAACCATTGACT
Found at i:10955974 original size:22 final size:22
Alignment explanation
Indices: 10955931--10955982 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
10955921 GGTCAAACCA
10955931 TTGACTTTGATCGATCATACTG
1 TTGACTTTGATCGATCATACTG
*
10955953 TTGACTTTGATCGGTC-TGACTG
1 TTGACTTTGATCGATCAT-ACTG
10955975 TTGACTTT
1 TTGACTTT
10955983 AACTTTGACT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
21 1 0.04
22 27 0.96
ACGTcount: A:0.17, C:0.17, G:0.21, T:0.44
Consensus pattern (22 bp):
TTGACTTTGATCGATCATACTG
Found at i:10960439 original size:22 final size:21
Alignment explanation
Indices: 10960413--10960470 Score: 71
Period size: 22 Copynumber: 2.7 Consensus size: 21
10960403 ACCCAAATCG
*
10960413 TTGACTTTGATCGATTAGACCA
1 TTGACTTTGATCGACT-GACCA
**
10960435 TTGACTTTGATCGGACTGACTG
1 TTGACTTTGATC-GACTGACCA
10960457 TTGACTTTGATCGA
1 TTGACTTTGATCGA
10960471 AAAAGTCAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 2 0.06
22 27 0.84
23 3 0.09
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.38
Consensus pattern (21 bp):
TTGACTTTGATCGACTGACCA
Found at i:10964543 original size:60 final size:60
Alignment explanation
Indices: 10964419--10964543 Score: 142
Period size: 60 Copynumber: 2.1 Consensus size: 60
10964409 TGGTCCCTTT
* * * * * * *
10964419 ACTATAAGGTATTGCTTTATTGAGTCTCTCAGCTATTAAAAGTTACAAAATAATCTCTCA
1 ACTATAAGGCATTGCATTATTGAGTCCCCCAACTATTAAAAGTTACAAAATAATCACCCA
* * ** *
10964479 ACTATAGGGCATTGCATTATTGAGTCCCCCAACTATTAAAAGTTATAAAATGGTCACCCG
1 ACTATAAGGCATTGCATTATTGAGTCCCCCAACTATTAAAAGTTACAAAATAATCACCCA
10964539 ACTAT
1 ACTAT
10964544 TCATGTGTTC
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
60 53 1.00
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.33
Consensus pattern (60 bp):
ACTATAAGGCATTGCATTATTGAGTCCCCCAACTATTAAAAGTTACAAAATAATCACCCA
Found at i:10966186 original size:18 final size:18
Alignment explanation
Indices: 10966163--10966197 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
10966153 CGGACTGATC
10966163 CGTATGGTTTTGTAAACG
1 CGTATGGTTTTGTAAACG
10966181 CGTATGGTTTTGTAAAC
1 CGTATGGTTTTGTAAAC
10966198 CTTCATATCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.11, G:0.26, T:0.40
Consensus pattern (18 bp):
CGTATGGTTTTGTAAACG
Found at i:10969166 original size:3 final size:3
Alignment explanation
Indices: 10969152--10969186 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
10969142 GTTTTAAAAA
*
10969152 TAT TAC TAT TAT TAT TA- TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
10969187 ACCCTACCCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 27 0.93
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:10969173 original size:17 final size:17
Alignment explanation
Indices: 10969151--10969187 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
10969141 GGTTTTAAAA
10969151 ATATTACTATTATTATT
1 ATATTACTATTATTATT
*
10969168 ATATTATTATTATTATT
1 ATATTACTATTATTATT
10969185 ATA
1 ATA
10969188 CCCTACCCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (17 bp):
ATATTACTATTATTATT
Found at i:10969699 original size:144 final size:143
Alignment explanation
Indices: 10969453--10969822 Score: 467
Period size: 144 Copynumber: 2.6 Consensus size: 143
10969443 GATCTGGAAA
*
10969453 TCCGATCAACATTTCGAACGGTAAAAATTTGTGTGATGTCAACACGAACAACATACTGAAAAATC
1 TCCGATCAACATTCCGAAC-GTAAAAA-TTGTGTGATGTCAACACGAACAACATACT-AAAAATC
* ** *
10969518 AAGACGATCGGACGGTGGACAGTGGTGGATCGGAGAAAACAAATCCGGACAGTTTTTTGCCACTA
63 AAGACGATCTGACGGTGGACAGTGACGGATCGGAGAAAACAAATCCGGACAGTTTTTGGCCACTA
* * **
10969583 GCCGGCGATTGGGATC
128 GCCGACGATCGAAATC
* * * *
10969599 TTCGATCAACATTCCGAACGTAAAAGTTGTGTGATGTCAACACAAACAACATACTAAGAAATGAA
1 TCCGATCAACATTCCGAACGTAAAAATTGTGTGATGTCAACACGAACAACATACTAA-AAATCAA
** * *
10969664 GACGATCTGACGGTGGACAGTGACGGATCGGAGAAAACAAATCCGGATGGTTTTTGGCCTCTTGC
65 GACGATCTGACGGTGGACAGTGACGGATCGGAGAAAACAAATCCGGACAGTTTTTGGCCACTAGC
10969729 CGACGATCGAAATC
130 CGACGATCGAAATC
* * * * *
10969743 TCCGATCAACATTCTGAATGGTGAAATATTTTGAGATGTCAACACGAACAA-AT--TAAAAATCA
1 TCCGATCAACATTCCGAA-CGT-AAAAATTGTGTGATGTCAACACGAACAACATACTAAAAATCA
10969805 AGACGATCTGACGGTGGA
64 AGACGATCTGACGGTGGA
10969823 TGACGGCAGA
Statistics
Matches: 195, Mismatches: 26, Indels: 10
0.84 0.11 0.04
Matches are distributed among these distances:
142 23 0.12
143 5 0.03
144 117 0.60
145 10 0.05
146 40 0.21
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.23
Consensus pattern (143 bp):
TCCGATCAACATTCCGAACGTAAAAATTGTGTGATGTCAACACGAACAACATACTAAAAATCAAG
ACGATCTGACGGTGGACAGTGACGGATCGGAGAAAACAAATCCGGACAGTTTTTGGCCACTAGCC
GACGATCGAAATC
Found at i:10974903 original size:43 final size:43
Alignment explanation
Indices: 10974855--10974954 Score: 128
Period size: 43 Copynumber: 2.3 Consensus size: 43
10974845 AGAAGGGGTT
* * *
10974855 ATCCACGATTTCAACTCTATGACGAAGAATATCGTACCTACGG
1 ATCCACGATTTCAACTCCATGACGAAGAATATCGTACCCACGC
* * * *
10974898 ATCCACGATTTTAACTCCATGACGGAGGATATCGTGCCCACGC
1 ATCCACGATTTCAACTCCATGACGAAGAATATCGTACCCACGC
*
10974941 ATCCACGGTTTCAA
1 ATCCACGATTTCAA
10974955 TTTCACGACG
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (43 bp):
ATCCACGATTTCAACTCCATGACGAAGAATATCGTACCCACGC
Found at i:10975529 original size:43 final size:43
Alignment explanation
Indices: 10975408--10975529 Score: 165
Period size: 43 Copynumber: 2.8 Consensus size: 43
10975398 CGAAGGGGCT
* **
10975408 ATCCATGATTTCAACTCCACGAC-ATAGGATATCGTACCCACGG
1 ATCCATGATTTCAACTCCACGACGA-AGGATATCGTGCCCACAC
* *
10975451 ATCCATGATTTCAACTCCACGACGGAGAATATCGTGCCCACAC
1 ATCCATGATTTCAACTCCACGACGAAGGATATCGTGCCCACAC
* *
10975494 ATCCACGATTTCAACTTCACGACGAAGGATATCGTG
1 ATCCATGATTTCAACTCCACGACGAAGGATATCGTG
10975530 TTCACCAGCA
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
43 69 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (43 bp):
ATCCATGATTTCAACTCCACGACGAAGGATATCGTGCCCACAC
Found at i:10975687 original size:42 final size:43
Alignment explanation
Indices: 10975614--10975715 Score: 118
Period size: 42 Copynumber: 2.4 Consensus size: 43
10975604 ACGAATGGGC
* * * *
10975614 CATCCACGATTTTAACTTCATGACGGAGGATATCGTACCCACGA
1 CATCCACGATTTCAACTCCACGACGGAGGATATCATACCCAC-A
* *
10975658 -ATCCACGA-TTCAACTCCACGACGGGGGATATCATGCCCACA
1 CATCCACGATTTCAACTCCACGACGGAGGATATCATACCCACA
*
10975699 CAACCACGATTTCAACT
1 CATCCACGATTTCAACT
10975716 TGACGAAAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
41 1 0.02
42 33 0.67
43 15 0.31
ACGTcount: A:0.30, C:0.31, G:0.17, T:0.22
Consensus pattern (43 bp):
CATCCACGATTTCAACTCCACGACGGAGGATATCATACCCACA
Found at i:10975851 original size:200 final size:205
Alignment explanation
Indices: 10975397--10975928 Score: 639
Period size: 200 Copynumber: 2.6 Consensus size: 205
10975387 TTTCAACTTC
* ** * *
10975397 ACGAAGGGGCTATCCATGATTTCAACTCCACGACATAGGATATCGTACCCACGGATCCATGATTT
1 ACGAAGGGGCTATCCACGATTTCAACTCCACGACGGAGGATATCGTACCCACGAATCCACGATTT
*
10975462 CAACTCCACGACGGAGAATATCGTGCCCACACATCCACGATTTCAACTTCACGACGAAGGATATC
66 CAACTCCACGACGGAGGATATCGTGCCCACACATCCACGATTTCAACTTCACGAC-AAGGATATC
* * * * * * * * *
10975527 GTGTTCACCAGCAGTAATGCAACCCTTGGATTTCAATTTCATGACGAAGGATATCCAATTCAAGG
130 GTGTCCACCAGCAG-AATACAACACTTAGATTTCAACTTCACGACGAAAGATATCCAAGTCAAAG
10975592 CTCAACTTCACG
194 CTCAACTTCACG
* * * * *
10975604 ACGAATGGGCCATCCACGATTTTAACTTCATGACGGAGGATATCGTACCCACGAATCCACGA-TT
1 ACGAAGGGGCTATCCACGATTTCAACTCCACGACGGAGGATATCGTACCCACGAATCCACGATTT
* * * * *
10975668 CAACTCCACGACGGGGGATATCATGCCCACACAACCACGATTTCAACTTGACGA-AAGGA-ATTG
66 CAACTCCACGACGGAGGATATCGTGCCCACACATCCACGATTTCAACTTCACGACAAGGATATCG
* * *
10975731 -GTCCACCCA-CA-ACATACAATACTTAGATTTCAACTTCACGAC-AAATATATTCAAGTCAAAG
131 TGTCCA-CCAGCAGA-ATACAACACTTAGATTTCAACTTCACGACGAAAGATATCCAAGTCAAAG
10975792 CTCAACTTCACG
194 CTCAACTTCACG
* * *
10975804 ATGAAGGGGTTATCCACGATTTCAACTCCACGACGGAGAATATCGTACCCAC-AGATCCACGATT
1 ACGAAGGGGCTATCCACGATTTCAACTCCACGACGGAGGATATCGTACCCACGA-ATCCACGATT
* * * *
10975868 TTAACTCCACGACGGAGGATATCGTGCCCACGCATCCACGGTTTCAATTTCACGACGAAGG
65 TCAACTCCACGACGGAGGATATCGTGCCCACACATCCACGATTTCAACTTCACGAC-AAGG
10975929 GAATCGTACA
Statistics
Matches: 275, Mismatches: 44, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
199 1 0.00
200 79 0.29
201 71 0.26
202 6 0.02
203 10 0.04
204 5 0.02
206 51 0.19
207 52 0.19
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (205 bp):
ACGAAGGGGCTATCCACGATTTCAACTCCACGACGGAGGATATCGTACCCACGAATCCACGATTT
CAACTCCACGACGGAGGATATCGTGCCCACACATCCACGATTTCAACTTCACGACAAGGATATCG
TGTCCACCAGCAGAATACAACACTTAGATTTCAACTTCACGACGAAAGATATCCAAGTCAAAGCT
CAACTTCACG
Found at i:10975863 original size:43 final size:43
Alignment explanation
Indices: 10975815--10975924 Score: 150
Period size: 43 Copynumber: 2.6 Consensus size: 43
10975805 TGAAGGGGTT
10975815 ATCCACGATTTCAACTCCACGACGGAGAATATCGTACCCACAG-
1 ATCCACGATTTCAACTCCACGACGGAGAATATCGTACCCAC-GC
* * *
10975858 ATCCACGATTTTAACTCCACGACGGAGGATATCGTGCCCACGC
1 ATCCACGATTTCAACTCCACGACGGAGAATATCGTACCCACGC
* * *
10975901 ATCCACGGTTTCAATTTCACGACG
1 ATCCACGATTTCAACTCCACGACG
10975925 AAGGGAATCG
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
42 1 0.02
43 58 0.98
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.22
Consensus pattern (43 bp):
ATCCACGATTTCAACTCCACGACGGAGAATATCGTACCCACGC
Found at i:10976520 original size:43 final size:43
Alignment explanation
Indices: 10976399--10976520 Score: 172
Period size: 43 Copynumber: 2.8 Consensus size: 43
10976389 CGAAGGGGCT
* **
10976399 ATCCACGATTTCAACTCCACGACGAAGGATATCGTACCCACGG
1 ATCCACGATTTCAACTCCACGACGAAGGATATCGTGCCCACAC
* * *
10976442 ATCCATGATTTCAACTCCACGACGGAGTATATCGTGCCCACAC
1 ATCCACGATTTCAACTCCACGACGAAGGATATCGTGCCCACAC
* *
10976485 ATCCACGTTTTCAACTTCACGACGAAGGATATCGTG
1 ATCCACGATTTCAACTCCACGACGAAGGATATCGTG
10976521 TTCACCAGTA
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 68 1.00
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (43 bp):
ATCCACGATTTCAACTCCACGACGAAGGATATCGTGCCCACAC
Found at i:10976944 original size:36 final size:36
Alignment explanation
Indices: 10976824--10976984 Score: 144
Period size: 37 Copynumber: 4.4 Consensus size: 36
10976814 CGTTGAATAT
* *
10976824 GTTTCCCTTGAAACAAAGTTTGTCTCTCTTGAGACA
1 GTTTCTCTTGAAACAAAGTTTGTCTCCCTTGAGACA
* * * * * *
10976860 ATTTCTTTTGGAACCAGGTTTTGTCTCTCTTGAGACA
1 GTTTCTCTTGAAACAAAG-TTTGTCTCCCTTGAGACA
* * * * *
10976897 -TATTATATTGAAAGAAGGTTTGTCTCCCTTGAGATA
1 GT-TTCTCTTGAAACAAAGTTTGTCTCCCTTGAGACA
* * *
10976933 GTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACG
1 GTTTCTCTTGAAAC-AAAGTTTGTCTCCCTTGAGACA
10976970 GTTTCTCTTGAAACA
1 GTTTCTCTTGAAACA
10976985 TAAAATCTTT
Statistics
Matches: 99, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
36 38 0.38
37 61 0.62
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (36 bp):
GTTTCTCTTGAAACAAAGTTTGTCTCCCTTGAGACA
Found at i:10976981 original size:73 final size:72
Alignment explanation
Indices: 10976824--10976984 Score: 160
Period size: 73 Copynumber: 2.2 Consensus size: 72
10976814 CGTTGAATAT
* * ** * * ** *
10976824 GTTTCCCTTGAAACAAAGTTTGTCTCTCTTGAGACAATTTCTTTTGGAACCAGGTTTTGTCTCTC
1 GTTTCTCTTGAAACAAAGTTTGTCTCCCTTGAGACAATTTCCCTTGAAACAAAATTTTGTCTCCC
10976889 TTGAGAC
66 TTGAGAC
* * * * * * *
10976896 ATATTATATTGAAAGAAGGTTTGTCTCCCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCC
1 GT-TTCTCTTGAAACAAAGTTTGTCTCCCTTGAGACAATTTCCCTTGAAACAAAATTTTGTCTCC
10976961 CTTGAGAC
65 CTTGAGAC
10976969 GGTTTCTCTTGAAACA
1 -GTTTCTCTTGAAACA
10976985 TAAAATCTTT
Statistics
Matches: 67, Mismatches: 20, Indels: 3
0.74 0.22 0.03
Matches are distributed among these distances:
72 1 0.01
73 65 0.97
74 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (72 bp):
GTTTCTCTTGAAACAAAGTTTGTCTCCCTTGAGACAATTTCCCTTGAAACAAAATTTTGTCTCCC
TTGAGAC
Found at i:10977042 original size:67 final size:66
Alignment explanation
Indices: 10976925--10977088 Score: 181
Period size: 67 Copynumber: 2.5 Consensus size: 66
10976915 TTTGTCTCCC
* * * * * *
10976925 TTGAGAT-AGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACGGTTTCTCT-TGAAACATAA
1 TTGAGATCA-TTTCCCTTGAAAC-AAGTTTTATCTCTCTAGAGACAGTTTCT-TGTGAAACACAA
10976988 AATCT
63 AA-CT
* *
10976993 TTGA-ATCATTTCCCTTTGAAACGAGTTTTATCTCTCTAGAGACAGTTTCTTGTGAAACACCAAA
1 TTGAGATCATTTCCC-TTGAAACAAGTTTTATCTCTCTAGAGACAGTTTCTTGTGAAACACAAAA
10977057 CT
65 CT
*
10977059 TTGAGATTATTTCCCTTGAAACAAGTTTTA
1 TTGAGATCATTTCCCTTGAAACAAGTTTTA
10977089 GTTTCCTTGA
Statistics
Matches: 82, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
66 21 0.26
67 49 0.60
68 12 0.15
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (66 bp):
TTGAGATCATTTCCCTTGAAACAAGTTTTATCTCTCTAGAGACAGTTTCTTGTGAAACACAAAAC
T
Found at i:10977186 original size:69 final size:67
Alignment explanation
Indices: 10977104--10977263 Score: 196
Period size: 69 Copynumber: 2.3 Consensus size: 67
10977094 CTTGAGATCA
* * *
10977104 TTTGAGATGTTTCTCTTGAAACAAATCCCA-ATTTCTTTAATATCTTTTCTCATGAAACAACAAC
1 TTTGAGATGTTTCTCTTGAAACAAATCCCATATTT-TTT-AGATCGTTTCTCATGAAACAACAAA
10977168 TAAAC
64 T-AAC
* * *
10977173 TTTGAGATATTTCTCTTGAGACAAATCCTATTATTTTTTAGATCGTTTCTCATGAAACAACAAAT
1 TTTGAGATGTTTCTCTTGAAACAAATCCCA-TATTTTTTAGATCGTTTCTCATGAAACAACAAAT
*
10977238 ATC
65 AAC
*
10977241 TTTGAGATCGTTTCCCTTGAAAC
1 TTTGAGAT-GTTTCTCTTGAAAC
10977264 GAATTTTGTC
Statistics
Matches: 78, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
68 10 0.13
69 61 0.78
70 3 0.04
71 4 0.05
ACGTcount: A:0.32, C:0.19, G:0.10, T:0.39
Consensus pattern (67 bp):
TTTGAGATGTTTCTCTTGAAACAAATCCCATATTTTTTAGATCGTTTCTCATGAAACAACAAATA
AC
Found at i:10977250 original size:33 final size:35
Alignment explanation
Indices: 10977104--10977263 Score: 107
Period size: 33 Copynumber: 4.7 Consensus size: 35
10977094 CTTGAGATCA
* *
10977104 TTTGAGAT-GTTTCTCTTGAAACAAATCCCAATTTC
1 TTTGAGATCGTTTCTCTTGAAACAAA-CCAAATATC
* * * * * *
10977139 TTTAATATCTTTTCTCATGAAAC-AA-CAACTAAAC
1 TTTGAGATCGTTTCTCTTGAAACAAACCAAAT-ATC
* * * * *
10977173 TTTGAGAT-ATTTCTCTTGAGACAAATCCTATTATT
1 TTTGAGATCGTTTCTCTTGAAACAAA-CCAAATATC
* *
10977208 TTTTAGATCGTTTCTCATGAAAC-AA-CAAATATC
1 TTTGAGATCGTTTCTCTTGAAACAAACCAAATATC
*
10977241 TTTGAGATCGTTTCCCTTGAAAC
1 TTTGAGATCGTTTCTCTTGAAAC
10977264 GAATTTTGTC
Statistics
Matches: 92, Mismatches: 27, Indels: 14
0.69 0.20 0.11
Matches are distributed among these distances:
33 39 0.42
34 9 0.10
35 18 0.20
36 26 0.28
ACGTcount: A:0.32, C:0.19, G:0.10, T:0.39
Consensus pattern (35 bp):
TTTGAGATCGTTTCTCTTGAAACAAACCAAATATC
Found at i:10977574 original size:131 final size:132
Alignment explanation
Indices: 10977333--10977818 Score: 608
Period size: 131 Copynumber: 3.7 Consensus size: 132
10977323 TGAAACCATT
* * * * *
10977333 ATCCCTAAAGATAGTCTGTCATCCTCATCACGTAGGAACCGTGTCATC-CCTCGACCAGATCTCC
1 ATCCCTAATGATGGCCTGTCGTCCTCATCAAGTAGGAACCGTGTCATCACCTCGACCAGATCTCC
* * * * *
10977397 TCATCACGTAGGAGTCGTGTCAATCTTAGATAACCAGCCGTCCTCATCACGTAAGAACCGTGTTA
66 TCATCACGTAAGAGCCGTGTCAACCTTAGATAACCAGCCGTACTCATCACGTAGGAACCGTGTTA
*
10977462 TT
131 TC
* * * *
10977464 ATCCCTAATGATGGCATGTAGTCCTCATCAAGTAGGAACCGTGTCATC-CCTGGATCAGATCTCC
1 ATCCCTAATGATGGCCTGTCGTCCTCATCAAGTAGGAACCGTGTCATCACCTCGACCAGATCTCC
* * * * * *
10977528 TCATCACGTAAGAACCGTGTTAACCTTAGATAACTAGCCTTTCTCATCACGTAGGAATCGTGTTA
66 TCATCACGTAAGAGCCGTGTCAACCTTAGATAACCAGCCGTACTCATCACGTAGGAACCGTGTTA
10977593 TC
131 TC
* * *
10977595 ATCCCTAATGATGGCCTGCCGTCCTCATCACGTAGGAACCGTGTCATCACC-CGACCTGATCTCC
1 ATCCCTAATGATGGCCTGTCGTCCTCATCAAGTAGGAACCGTGTCATCACCTCGACCAGATCTCC
* *
10977659 TCATCACGTATGAGCCGTGTCAACCTCAGATAACCAGCCGTACTCATCACGTAGGAACCGTGTTA
66 TCATCACGTAAGAGCCGTGTCAACCTTAGATAACCAGCCGTACTCATCACGTAGGAACCGTGTTA
10977724 TC
131 TC
* * **
10977726 A-CCCTTA-GATGGCCTGTCGTCCTCATCACA-TAGGAACCGTGTCATCACCT-GACCTGGCCTC
1 ATCCCTAATGATGGCCTGTCGTCCTCATCA-AGTAGGAACCGTGTCATCACCTCGACCAGATCTC
* * *
10977787 CTTATCACGTAGGAGTCGTGTCAAGCCTTAGA
65 CTCATCACGTAAGAGCCGTGTCAA-CCTTAGA
10977819 CGACCAGAAC
Statistics
Matches: 307, Mismatches: 44, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
129 69 0.22
130 11 0.04
131 225 0.73
132 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (132 bp):
ATCCCTAATGATGGCCTGTCGTCCTCATCAAGTAGGAACCGTGTCATCACCTCGACCAGATCTCC
TCATCACGTAAGAGCCGTGTCAACCTTAGATAACCAGCCGTACTCATCACGTAGGAACCGTGTTA
TC
Found at i:10977773 original size:46 final size:45
Alignment explanation
Indices: 10977354--10977774 Score: 201
Period size: 40 Copynumber: 9.7 Consensus size: 45
10977344 TAGTCTGTCA
* * *
10977354 TCCTCATCACGTAGGAACCGTGTCAT--CCCTCGA---CCAGATC-
1 TCCTCATCACGTAGGAACCGTGTCATCACCCTAGATGGCCTG-CCG
** * * ** *
10977394 TCCTCATCACGTAGGAGTCGTGTCA--ATCTTAGATAACCAGCCG
1 TCCTCATCACGTAGGAACCGTGTCATCACCCTAGATGGCCTGCCG
* * * * **
10977437 TCCTCATCACGTAAGAACCGTGTTATTATCCCTAATGATGGCATGTAG
1 TCCTCATCACGTAGGAACCGTGTCATCA-CCCT-A-GATGGCCTGCCG
* * * *
10977485 TCCTCATCAAGTAGGAACCGTGTCAT--CCCTGGAT---CAGATC-
1 TCCTCATCACGTAGGAACCGTGTCATCACCCTAGATGGCCTG-CCG
* * * ** *
10977525 TCCTCATCACGTAAGAACCGTGT--TAACCTTAGAT-AACTAGCCT
1 TCCTCATCACGTAGGAACCGTGTCATCACCCTAGATGGCCT-GCCG
* * *
10977568 TTCTCATCACGTAGGAATCGTGTTATCATCCCTAATGATGGCCTGCCG
1 TCCTCATCACGTAGGAACCGTGTCATCA-CCCT-A-GATGGCCTGCCG
*
10977616 TCCTCATCACGTAGGAACCGTGTCATCACCC--GA---CCTGATC-
1 TCCTCATCACGTAGGAACCGTGTCATCACCCTAGATGGCCTG-CCG
* * ** *
10977656 TCCTCATCACGTATGAGCCGTGTCA--A-CCTCAGATAACCAGCCG
1 TCCTCATCACGTAGGAACCGTGTCATCACCCT-AGATGGCCTGCCG
* * *
10977699 TACTCATCACGTAGGAACCGTGTTATCACCCTTAGATGGCCTGTCG
1 TCCTCATCACGTAGGAACCGTGTCATCACCC-TAGATGGCCTGCCG
*
10977745 TCCTCATCACATAGGAACCGTGTCATCACC
1 TCCTCATCACGTAGGAACCGTGTCATCACC
10977775 TGACCTGGCC
Statistics
Matches: 288, Mismatches: 58, Indels: 64
0.70 0.14 0.16
Matches are distributed among these distances:
37 2 0.01
38 2 0.01
40 84 0.29
41 2 0.01
42 4 0.01
43 75 0.26
45 8 0.03
46 43 0.15
47 6 0.02
48 60 0.21
49 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.26
Consensus pattern (45 bp):
TCCTCATCACGTAGGAACCGTGTCATCACCCTAGATGGCCTGCCG
Found at i:10977990 original size:3 final size:3
Alignment explanation
Indices: 10977982--10978030 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
10977972 GTTTTAAAAA
*
10977982 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ACT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
10978030 A
1 A
10978031 CCCTACCCAC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:10978656 original size:146 final size:145
Alignment explanation
Indices: 10978307--10978669 Score: 424
Period size: 145 Copynumber: 2.5 Consensus size: 145
10978297 TTTGGACCTC
*
10978307 CGATCAACATTCCAAACGGTCAAAAGTTGCGCGATGTCAACACGAACAACATACT-AAAAATTCA
1 CGATCAACATTCCGAACGGTCAAAAGTTGCGCGATGTCAACACGAACAACATACTGAAAAA-TCA
** * *
10978371 AGACGATCGGTCGGTGGACGGTGGCGGATCGGAGAAAACAAAACTAGAAGGTTTTTTGCCTTTGG
65 AGACGATCGGAAGGTGGACGGTGGCGGATCGGAGAAAACAAAACCAGAAGGTTTTTGGCCTTTGG
*
10978436 CCGGCAATAGAGACCA
130 CCGACAATAGAGACCA
* * *
10978452 CGAACAACATTTCGAACGGTCAAAAGTTGTGCGATGTCAACACGAACAACATACTGAAAAATCAA
1 CGATCAACATTCCGAACGGTCAAAAGTTGCGCGATGTCAACACGAACAACATACTGAAAAATCAA
** * * * * * *
10978517 GACGATTTGAAGGTGGGCGGTGGCGGATTGTAGAAAACAAATCCGGACGGTTTTTGGCCTCTT-G
66 GACGATCGGAAGGTGGACGGTGGCGGATCGGAGAAAACAAAACCAGAAGGTTTTTGGCCT-TTGG
* * * **
10978581 TCGACGATCGAGATCTT
130 CCGACAATAGAGA-CCA
* * * * * * *
10978598 CGATCAACATTCCGAACGGTGAAAGGTTACGAGATGTCAACTCGAACAACATATTGAAAAATCAT
1 CGATCAACATTCCGAACGGTCAAAAGTTGCGCGATGTCAACACGAACAACATACTGAAAAATCAA
10978663 GACGATC
66 GACGATC
10978670 TGATAGTGGA
Statistics
Matches: 182, Mismatches: 33, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
145 113 0.62
146 69 0.38
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.21
Consensus pattern (145 bp):
CGATCAACATTCCGAACGGTCAAAAGTTGCGCGATGTCAACACGAACAACATACTGAAAAATCAA
GACGATCGGAAGGTGGACGGTGGCGGATCGGAGAAAACAAAACCAGAAGGTTTTTGGCCTTTGGC
CGACAATAGAGACCA
Found at i:10980014 original size:227 final size:229
Alignment explanation
Indices: 10979643--10980099 Score: 900
Period size: 227 Copynumber: 2.0 Consensus size: 229
10979633 TAATTTTAAT
10979643 AACAAATCTGAACCTAAATCTAAGGTATTAACCAATACTCATTGTCGGTTCTTGTAACCCGAGTT
1 AACAAATCTGAACCTAAATCTAAGGTATTAACCAATACTCATTGTCGGTTCTTGTAACCCGAGTT
10979708 GGTTCACAGTTAACCGGTAACGGTGGAGGAGGCGATAGATTTGATTCCGATTCGATATCAACTGC
66 GGTTCACAGTTAACCGGTAACGGTGGAGGAGGCGATAGATTTGATTCCGATTCGATATCAACTGC
10979773 AAAAATCATGACTTCCAA-TTAATATCTCGATTCAACGAATTTCAGATTAATGAAGCAATTTAAC
131 AAAAATCATGACTTCCAATTTAATATCTCGATTCAACGAATTTCAGATTAATGAAGCAATTTAAC
10979837 GACGA-TAAAAATAATTCTCGGTTAGAATTACGG
196 GACGATTAAAAATAATTCTCGGTTAGAATTACGG
10979870 AACAAATCTGAACCTAAATCTAAGGTATTAACCAATACTCATTGTCGGTTCTTGTAACCCGAGTT
1 AACAAATCTGAACCTAAATCTAAGGTATTAACCAATACTCATTGTCGGTTCTTGTAACCCGAGTT
10979935 GGTTCACAGTTAACCGGTAACGGTGGAGGAGGCGATAGATTTGATTCCGATTCGATATCAACTGC
66 GGTTCACAGTTAACCGGTAACGGTGGAGGAGGCGATAGATTTGATTCCGATTCGATATCAACTGC
10980000 AAAAATCATGACTTCCAATTTAATATCTCGATTCAACGAATTTCAGATTAATGAAGCAATTTAAC
131 AAAAATCATGACTTCCAATTTAATATCTCGATTCAACGAATTTCAGATTAATGAAGCAATTTAAC
10980065 GACGATTAAAAATAATTCTCGGTTAGAATTACGG
196 GACGATTAAAAATAATTCTCGGTTAGAATTACGG
10980099 A
1 A
10980100 CCGGGCAGTG
Statistics
Matches: 228, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
227 148 0.65
228 51 0.22
229 29 0.13
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (229 bp):
AACAAATCTGAACCTAAATCTAAGGTATTAACCAATACTCATTGTCGGTTCTTGTAACCCGAGTT
GGTTCACAGTTAACCGGTAACGGTGGAGGAGGCGATAGATTTGATTCCGATTCGATATCAACTGC
AAAAATCATGACTTCCAATTTAATATCTCGATTCAACGAATTTCAGATTAATGAAGCAATTTAAC
GACGATTAAAAATAATTCTCGGTTAGAATTACGG
Found at i:10987297 original size:16 final size:15
Alignment explanation
Indices: 10987273--10987302 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
10987263 TTTCTTCCGG
10987273 ATTTATTTTTTATAT
1 ATTTATTTTTTATAT
10987288 ATTTATTTTTT-TAT
1 ATTTATTTTTTATAT
10987302 A
1 A
10987303 GTAATATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (15 bp):
ATTTATTTTTTATAT
Found at i:10987349 original size:3 final size:3
Alignment explanation
Indices: 10987343--10987377 Score: 54
Period size: 3 Copynumber: 11.7 Consensus size: 3
10987333 ATATATAATA
10987343 TAT TAT TAT TAT TAAT TAT TAT TAT TA- TAT TAT TA
1 TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TA
10987378 ATACTATTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 25 0.83
4 3 0.10
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:10987362 original size:13 final size:14
Alignment explanation
Indices: 10987341--10987377 Score: 67
Period size: 13 Copynumber: 2.7 Consensus size: 14
10987331 TTATATATAA
10987341 TATATTATTATTAT
1 TATATTATTATTAT
10987355 TA-ATTATTATTAT
1 TATATTATTATTAT
10987368 TATATTATTA
1 TATATTATTA
10987378 ATACTATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 13 0.59
14 9 0.41
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (14 bp):
TATATTATTATTAT
Found at i:10992031 original size:93 final size:96
Alignment explanation
Indices: 10991918--10992178 Score: 379
Period size: 93 Copynumber: 2.7 Consensus size: 96
10991908 ATATTATAAT
10991918 ATTATATATATACAATAAAGCTTGAGATGTCCCTCTAGAGCAATTGGTTAAATGCC-CGACTTTA
1 ATTATATATATACAATAAAGCTTGAGATGTCCCTCTAGAGCAATTGGTTAAATGCCTCGACTTTA
*
10991982 TGGATAAGATTTA-CTAGCCTGATAAAGGTG
66 TGGATAAGATTCAGCTAGCCTGATAAAGGTG
*
10992012 ATTATA-ATATACAATAAAGCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAATGCCTCGACTTTA
1 ATTATATATATACAATAAAGCTTGAGATGTCCCTCTAGAGCAATTGGTTAAATGCCTCGACTTTA
*
10992076 TGGATAATATTCAGCTAGCCTGATAAAGGTG
66 TGGATAAGATTCAGCTAGCCTGATAAAGGTG
* * * * *
10992107 ATTATAATATCTATACAATAATA--TTAAGCTATCCCTCTAGAGCAATTGGTTAAACGCCTCGGC
1 ATTAT-ATA--TATACAATAA-AGCTTGAGATGTCCCTCTAGAGCAATTGGTTAAATGCCTCGAC
10992170 TTTATGGAT
62 TTTATGGAT
10992179 TCAGCTAGCC
Statistics
Matches: 152, Mismatches: 8, Indels: 10
0.89 0.05 0.06
Matches are distributed among these distances:
93 48 0.32
94 25 0.16
95 22 0.14
96 1 0.01
97 1 0.01
98 44 0.29
99 10 0.07
100 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (96 bp):
ATTATATATATACAATAAAGCTTGAGATGTCCCTCTAGAGCAATTGGTTAAATGCCTCGACTTTA
TGGATAAGATTCAGCTAGCCTGATAAAGGTG
Found at i:10993555 original size:239 final size:245
Alignment explanation
Indices: 10993236--10993713 Score: 720
Period size: 239 Copynumber: 2.0 Consensus size: 245
10993226 CTTTCTCAGG
* *
10993236 ATTGGATTTCAACTTCACAACGAATGATATCCAATTCAAAGCTCAACTTCATGGCGAAGGGGCTT
1 ATTGGATTTCAACTTCACAACGAAGGATATCCAATTCAAAGCTCAACTTCATGACGAAGGGGCTT
* *
10993301 CCCAGTTTTATTCAGAGCCAATTTCAACTTCACGGCGAAGGATATT-GACTCGAA-ATA-A-T-A
66 CCCAGCTTCATTCAGAGCCAATTTCAACTTCACGGCGAAGGATATTGGACTCGAACA-ACATTCA
* * *
10993361 -C-AAGCTTGGATTTCAACTTCACGACGAAGGATATTCAAGTCAAGGCTCAACTTCACTACGAAG
130 TCTAAGATTGGATTTCAACTTCACGACGAAGGATATCCAAGTCAAGGCTCAACTTCACAACGAAG
10993424 GGGCCATCCACGATTTCAACTTCACGAAGAA-GGATATCGTGCCAACTCTAA
195 GGGCCATCCACGATTTCAACTTCACGAAGAAGGGA-ATCGTGCCAACTCTAA
*
10993475 ATTGGATTTCAACTTCACGACGAAGGATATCCAATTCAAAGCTCAACTTCATGACGAAGGGGCTT
1 ATTGGATTTCAACTTCACAACGAAGGATATCCAATTCAAAGCTCAACTTCATGACGAAGGGGCTT
10993540 CCCAGCTTCATTCAGAGCCAATTTCAACTTCACGGCGAAGGATATTGGACTCGAAGCAACATTCA
66 CCCAGCTTCATTCAGAGCCAATTTCAACTTCACGGCGAAGGATATTGGACTCGAA-CAACATTCA
* * * *
10993605 TCTTTAGATTGGATTTCAACTTCACGACGAATGATATCCAATTCAAGGCTCAACTTTACAACGAA
130 TC-TAAGATTGGATTTCAACTTCACGACGAAGGATATCCAAGTCAAGGCTCAACTTCACAACGAA
* * * *
10993670 TGGGTCATCCACGGTTTCAACTTCACGACGAAGGGAATCGTGCC
194 GGGGCCATCCACGATTTCAACTTCACGAAGAAGGGAATCGTGCC
10993714 CACTAGCAAC
Statistics
Matches: 213, Mismatches: 16, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
239 106 0.50
240 8 0.04
241 1 0.00
242 2 0.01
243 1 0.00
244 1 0.00
245 1 0.00
247 90 0.42
248 3 0.01
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.26
Consensus pattern (245 bp):
ATTGGATTTCAACTTCACAACGAAGGATATCCAATTCAAAGCTCAACTTCATGACGAAGGGGCTT
CCCAGCTTCATTCAGAGCCAATTTCAACTTCACGGCGAAGGATATTGGACTCGAACAACATTCAT
CTAAGATTGGATTTCAACTTCACGACGAAGGATATCCAAGTCAAGGCTCAACTTCACAACGAAGG
GGCCATCCACGATTTCAACTTCACGAAGAAGGGAATCGTGCCAACTCTAA
Found at i:10993849 original size:124 final size:124
Alignment explanation
Indices: 10993594--10993825 Score: 365
Period size: 124 Copynumber: 1.9 Consensus size: 124
10993584 TTGGACTCGA
* *
10993594 AGCAACATTCATCTTTAGATTGGATTTCAACTTCACGACGAATGATATCCAATTCAAGGCTCAAC
1 AGCAACATTCATCTTCAGATTGGATTTCAACTTCACGACGAAGGATATCCAATTCAAGGCTCAAC
* * * * *
10993659 TTTACAACGAATGGGTCATCCACGGTTTCAACTTCACGACGAAGGGAATCGTGCCCACT
66 TTCACAACGAAGGGGCCATCAACGATTTCAACTTCACGACGAAGGGAATCGTGCCCACT
* *
10993718 AGCAACATTCATCTTCATATTGGATTTCAACTTCACGATGAAGGATATCCAATTCAAGGCTCAAC
1 AGCAACATTCATCTTCAGATTGGATTTCAACTTCACGACGAAGGATATCCAATTCAAGGCTCAAC
* *
10993783 TTCACAACGTAGGGGCCCTCAACGATTTCAACTTCACGACGAA
66 TTCACAACGAAGGGGCCATCAACGATTTCAACTTCACGACGAA
10993826 TGATATCGTG
Statistics
Matches: 97, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
124 97 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (124 bp):
AGCAACATTCATCTTCAGATTGGATTTCAACTTCACGACGAAGGATATCCAATTCAAGGCTCAAC
TTCACAACGAAGGGGCCATCAACGATTTCAACTTCACGACGAAGGGAATCGTGCCCACT
Found at i:10993983 original size:84 final size:84
Alignment explanation
Indices: 10993837--10994975 Score: 1287
Period size: 84 Copynumber: 13.6 Consensus size: 84
10993827 GATATCGTGT
* * * * * * *
10993837 TCATTTGCAACATAGCTCAAGGCAAGAAGGGCTATTTGCCAATAAAAGACCTTTGAGATCGACTA
1 TCATTTGCAGCATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
*
10993902 CGCTCAGCTCCAAGGCAAA
66 CGCTCAGCTCCAAGGCATA
** **
10993921 TCATTTATAGCATAACTCAAGGGTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
1 TCATTTGCAGCATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
10993986 CGCTCAGCTCCAAGGCATA
66 CGCTCAGCTCCAAGGCATA
* * * * *
10994005 TCATTTGCAACATAGCTCAAGGAAAGAAGGGTTATTTTCCAACAAAAGACCTTCGAGTTCGACTA
1 TCATTTGCAGCATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
*
10994070 CACTCAGCTCCAAGGCATA
66 CGCTCAGCTCCAAGGCATA
* * * *
10994089 TCATTTGCAGCATAACTCAAGGCTAGAAAGCTTATCTGCCAACAAAAGACCTTCGAGTTTGACTA
1 TCATTTGCAGCATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
* * *
10994154 TGCTTAGCTCCAAGGCACA
66 CGCTCAGCTCCAAGGCATA
* * * * * ** * * * * *
10994173 TCATTTGCAACATAGCTCAAGGAAATAATGAATATTTTCCAACAAAAGACCTTTGAGTTCAATTA
1 TCATTTGCAGCATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
* *
10994238 CGCTCAGCTCCAAGGAACA
66 CGCTCAGCTCCAAGGCATA
* * * * * *
10994257 TCATTTGCAGTATAACTCAATGCTATAAGGGTTATCTGCCAACAAAATACCTTCGAGTTCAACTA
1 TCATTTGCAGCATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
10994322 CGCTCAGCTCCAAGGCATA
66 CGCTCAGCTCCAAGGCATA
* * *
10994341 TCATTTGCAACATAGCTCAAGGCAAGAAGGGTTATTTGCCAACAAAAGACCTTCGAGTTCGACTA
1 TCATTTGCAGCATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
* * *
10994406 TGCT-ATGCTCCAAGACACA
66 CGCTCA-GCTCCAAGGCATA
* * *
10994425 TCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCT-ACAACAAAAGACCTTCGAGTTCGACTA
1 TCATTTGCAGCATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
*
10994489 TGCTCAGCTCCAAGGCATA
66 CGCTCAGCTCCAAGGCATA
* * * * * * *
10994508 TCATTTGCAACATAGCTCAAGGAAAGAAGGGCTATTTGCCAACGAAATACCTTCGAGTTCGACTA
1 TCATTTGCAGCATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
* * *
10994573 TGCTCAGCTCCAAGGAACA
66 CGCTCAGCTCCAAGGCATA
* * *
10994592 TAATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTTCCAACAAAAGACCTTCGAGTTCGACTA
1 TCATTTGCAGCATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
*
10994657 CGCTCAGCTCCAAGGCACA
66 CGCTCAGCTCCAAGGCATA
* * * * * * *
10994676 TTATTTGCAGCATAGCTCAAGTCAAGAAGGGATATTTGCCAACAAAAGACCTTTGAGTTCAACTA
1 TCATTTGCAGCATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
*
10994741 CGCTCAGCTCCAAGGCACA
66 CGCTCAGCTCCAAGGCATA
* * * * * *
10994760 TCATTTGCAGCATAACTCAAGGCTAGAAGAGTTATCTTCCAACAAAAGAACTTCAAGTTCGATTA
1 TCATTTGCAGCATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
* * *
10994825 CACTCAGCTCAAAGACATA
66 CGCTCAGCTCCAAGGCATA
* * * * *** * * *
10994844 TTATTTGTAGCATAGCTTAAGTTGAGAAGGGTTATTTGCCAACCAAAGACCTTCG-GTTCGATTA
1 TCATTTGCAGCATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
* * *
10994908 CGTTCAACT-CAGAGGCAAA
66 CGCTCAGCTCCA-AGGCATA
* * * *
10994927 TCAAATTTGCAGCATAACTCAAAGCAAGAAGGGCTATCTGTCAATAAAA
1 TC--ATTTGCAGCATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAA
10994976 TTGTGGAGTT
Statistics
Matches: 880, Mismatches: 169, Indels: 11
0.83 0.16 0.01
Matches are distributed among these distances:
82 1 0.00
83 93 0.11
84 753 0.86
85 33 0.04
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.24
Consensus pattern (84 bp):
TCATTTGCAGCATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
CGCTCAGCTCCAAGGCATA
Found at i:10994126 original size:168 final size:168
Alignment explanation
Indices: 10993837--10994975 Score: 1512
Period size: 168 Copynumber: 6.8 Consensus size: 168
10993827 GATATCGTGT
* * * * *
10993837 TCATTTGCAACATAGCTCAAGGCAAGAAGGGCTATTTGCCAATAAAAGACCTTTGAGATCGACTA
1 TCATTTGCAACATAGCTCAAGGAAAGAAGGGTTATTTGCCAACAAAAGACCTTCGAGTTCGACTA
* ** *
10993902 CGCTCAGCTCCAAGGCAAATCATTTATAGCATAACTCAAGGGTAGAAGGGTTATCTGCCAACAAA
66 CGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAA
10993967 AGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATA
131 AGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATA
*
10994005 TCATTTGCAACATAGCTCAAGGAAAGAAGGGTTATTTTCCAACAAAAGACCTTCGAGTTCGACTA
1 TCATTTGCAACATAGCTCAAGGAAAGAAGGGTTATTTGCCAACAAAAGACCTTCGAGTTCGACTA
* * * *
10994070 CACTCAGCTCCAAGGCATATCATTTGCAGCATAACTCAAGGCTAGAAAGCTTATCTGCCAACAAA
66 CGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAA
* * * *
10994135 AGACCTTCGAGTTTGACTATGCTTAGCTCCAAGGCACA
131 AGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATA
* * ** * * * *
10994173 TCATTTGCAACATAGCTCAAGGAAATAATGAATATTTTCCAACAAAAGACCTTTGAGTTCAATTA
1 TCATTTGCAACATAGCTCAAGGAAAGAAGGGTTATTTGCCAACAAAAGACCTTCGAGTTCGACTA
* * * *
10994238 CGCTCAGCTCCAAGGAACATCATTTGCAGTATAACTCAATGCTATAAGGGTTATCTGCCAACAAA
66 CGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAA
* *
10994303 ATACCTTCGAGTTCAACTACGCTCAGCTCCAAGGCATA
131 AGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATA
*
10994341 TCATTTGCAACATAGCTCAAGGCAAGAAGGGTTATTTGCCAACAAAAGACCTTCGAGTTCGACTA
1 TCATTTGCAACATAGCTCAAGGAAAGAAGGGTTATTTGCCAACAAAAGACCTTCGAGTTCGACTA
* * * *
10994406 TGCT-ATGCTCCAAGACACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCT-ACAACAA
66 CGCTCA-GCTCCAAGGCACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACAA
*
10994469 AAGACCTTCGAGTTCGACTATGCTCAGCTCCAAGGCATA
130 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATA
* * *
10994508 TCATTTGCAACATAGCTCAAGGAAAGAAGGGCTATTTGCCAACGAAATACCTTCGAGTTCGACTA
1 TCATTTGCAACATAGCTCAAGGAAAGAAGGGTTATTTGCCAACAAAAGACCTTCGAGTTCGACTA
* * * *
10994573 TGCTCAGCTCCAAGGAACATAATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTTCCAACAAA
66 CGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAA
*
10994638 AGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACA
131 AGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATA
* * ** * * *
10994676 TTATTTGCAGCATAGCTCAAGTCAAGAAGGGATATTTGCCAACAAAAGACCTTTGAGTTCAACTA
1 TCATTTGCAACATAGCTCAAGGAAAGAAGGGTTATTTGCCAACAAAAGACCTTCGAGTTCGACTA
* *
10994741 CGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTCAAGGCTAGAAGAGTTATCTTCCAACAAA
66 CGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAA
* * * * * *
10994806 AGAACTTCAAGTTCGATTACACTCAGCTCAAAGACATA
131 AGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATA
* * * * *** * *
10994844 TTATTTGTAGCATAGCTTAAGTTGAGAAGGGTTATTTGCCAACCAAAGACCTTCG-GTTCGATTA
1 TCATTTGCAACATAGCTCAAGGAAAGAAGGGTTATTTGCCAACAAAAGACCTTCGAGTTCGACTA
* * * * * * * *
10994908 CGTTCAACT-CAGAGGCAAATCAAATTTGCAGCATAACTCAAAGCAAGAAGGGCTATCTGTCAAT
66 CGCTCAGCTCCA-AGGCACATC--ATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAAC
10994972 AAAA
128 AAAA
10994976 TTGTGGAGTT
Statistics
Matches: 857, Mismatches: 108, Indels: 11
0.88 0.11 0.01
Matches are distributed among these distances:
166 2 0.00
167 176 0.21
168 641 0.75
169 38 0.04
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.24
Consensus pattern (168 bp):
TCATTTGCAACATAGCTCAAGGAAAGAAGGGTTATTTGCCAACAAAAGACCTTCGAGTTCGACTA
CGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAA
AGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATA
Found at i:10994988 original size:503 final size:503
Alignment explanation
Indices: 10993837--10994965 Score: 1555
Period size: 503 Copynumber: 2.2 Consensus size: 503
10993827 GATATCGTGT
* * * *
10993837 TCATTTGCAACATAGCTCAAGGCAAGAAGGGCTATTTGCCAATAAAAGACCTTTGAGATCGACTA
1 TCATTTGCAACATAGCTCAAGGCAAGAAGGGTTATTTGCCAACAAAAGACCTTCGAGTTCGACTA
* * * * ** * *
10993902 CGCTCA-GCTCCAAGGCAAATCATTTATAGCATAACTCAAGGGTAGAAGGGTTATCTGCCAACAA
66 CGCT-ATACTCCAAGACAAATCATTTACAGCATAACTCAAAGCAAGAAGGGCTATCT-ACAACAA
10993966 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAACATAGCTCAAGGAAAG
129 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAACATAGCTCAAGGAAAG
* * * * *
10994031 AAGGGTTATTTTCCAACAAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCATATCATTTG
194 AAGGGCTATTTGCCAACAAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGAACATAATTTG
* * *
10994096 CAGCATAACTCAAGGCTAGAAAGCTTATCTGCCAACAAAAGACCTTCGAGTTTGACTATGCTTAG
259 CAGCATAACTCAAGGCTAGAAAGCTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAG
* * *
10994161 CTCCAAGGCACATCATTTGCAACATAGCTCAAGGAAATAATGAATATTTTCCAACAAAAGACCTT
324 CTCCAAGGCACATCATTTGCAACATAGCTCAAGGAAAGAAGGAATATTTGCCAACAAAAGACCTT
* * * * *
10994226 TGAGTTCAATTACGCTCAGCTCCAAGGAACATCATTTGCAGTATAACTCAATGCTATAAGGGTTA
389 TGAGTTCAACTACGCTCAGCTCCAAGGAACATCATTTGCAGCATAACTCAAGGCTAGAAGAGTTA
* * * * * *
10994291 TCTGCCAACAAAATACCTTCGAGTTCAACTACGCTCAGCTCCAAGGCATA
454 TCTGCCAACAAAAGAACTTCAAGTTCAACTACACTCAGCTCAAAGACATA
10994341 TCATTTGCAACATAGCTCAAGGCAAGAAGGGTTATTTGCCAACAAAAGACCTTCGAGTTCGACTA
1 TCATTTGCAACATAGCTCAAGGCAAGAAGGGTTATTTGCCAACAAAAGACCTTCGAGTTCGACTA
* * * * * *
10994406 TGCTATGCTCCAAGACACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTACAACAAAA
66 CGCTATACTCCAAGACAAATCATTTACAGCATAACTCAAAGCAAGAAGGGCTATCTACAACAAAA
*
10994471 GACCTTCGAGTTCGACTATGCTCAGCTCCAAGGCATATCATTTGCAACATAGCTCAAGGAAAGAA
131 GACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAACATAGCTCAAGGAAAGAA
* * **
10994536 GGGCTATTTGCCAACGAAATACCTTCGAGTTCGACTATGCTCAGCTCCAAGGAACATAATTTGCA
196 GGGCTATTTGCCAACAAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGAACATAATTTGCA
* * *
10994601 GCATAACTCAAGGCTAGAAGGGTTATCTTCCAACAAAAGACCTTCGAGTTCGACTACGCTCAGCT
261 GCATAACTCAAGGCTAGAAAGCTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAGCT
* * ** *
10994666 CCAAGGCACATTATTTGCAGCATAGCTCAAGTCAAGAAGGGATATTTGCCAACAAAAGACCTTTG
326 CCAAGGCACATCATTTGCAACATAGCTCAAGGAAAGAAGGAATATTTGCCAACAAAAGACCTTTG
*
10994731 AGTTCAACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTCAAGGCTAGAAGAGTTATC
391 AGTTCAACTACGCTCAGCTCCAAGGAACATCATTTGCAGCATAACTCAAGGCTAGAAGAGTTATC
* * *
10994796 TTCCAACAAAAGAACTTCAAGTTCGATTACACTCAGCTCAAAGACATA
456 TGCCAACAAAAGAACTTCAAGTTCAACTACACTCAGCTCAAAGACATA
* * * * *** * *
10994844 TTATTTGTAGCATAGCTTAAGTTGAGAAGGGTTATTTGCCAACCAAAGACCTTCG-GTTCGATTA
1 TCATTTGCAACATAGCTCAAGGCAAGAAGGGTTATTTGCCAACAAAAGACCTTCGAGTTCGACTA
* * *
10994908 CGTTCA-ACT-CAGAGGCAAATCAAATTTGCAGCATAACTCAAAGCAAGAAGGGCTATCT
66 CGCT-ATACTCCA-AGACAAATC--ATTTACAGCATAACTCAAAGCAAGAAGGGCTATCT
10994966 GTCAATAAAA
Statistics
Matches: 553, Mismatches: 67, Indels: 10
0.88 0.11 0.02
Matches are distributed among these distances:
501 2 0.00
502 19 0.03
503 391 0.71
504 141 0.25
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (503 bp):
TCATTTGCAACATAGCTCAAGGCAAGAAGGGTTATTTGCCAACAAAAGACCTTCGAGTTCGACTA
CGCTATACTCCAAGACAAATCATTTACAGCATAACTCAAAGCAAGAAGGGCTATCTACAACAAAA
GACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAACATAGCTCAAGGAAAGAA
GGGCTATTTGCCAACAAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGAACATAATTTGCA
GCATAACTCAAGGCTAGAAAGCTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAGCT
CCAAGGCACATCATTTGCAACATAGCTCAAGGAAAGAAGGAATATTTGCCAACAAAAGACCTTTG
AGTTCAACTACGCTCAGCTCCAAGGAACATCATTTGCAGCATAACTCAAGGCTAGAAGAGTTATC
TGCCAACAAAAGAACTTCAAGTTCAACTACACTCAGCTCAAAGACATA
Found at i:10995571 original size:13 final size:13
Alignment explanation
Indices: 10995553--10995578 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
10995543 TTATATATAT
10995553 ATTATTATTATTA
1 ATTATTATTATTA
10995566 ATTATTATTATTA
1 ATTATTATTATTA
10995579 TAATATTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
ATTATTATTATTA
Found at i:10996632 original size:28 final size:29
Alignment explanation
Indices: 10996577--10996733 Score: 178
Period size: 28 Copynumber: 5.4 Consensus size: 29
10996567 AAAATAACTA
*
10996577 CTAAAATAGTACCTTTATCGAATTAAATTC
1 CTAAAATAGCACCTTT-TCGAATTAAATTC
*
10996607 CTAAAATAGCA-CTTTTTGAATTAAATTC
1 CTAAAATAGCACCTTTTCGAATTAAATTC
* *
10996635 TTAATATAGCACCTTTTTCGAATTAAA-TC
1 CTAAAATAGCACC-TTTTCGAATTAAATTC
*
10996664 CTAAAATAGCACCTTTTCAAATTAAATTC
1 CTAAAATAGCACCTTTTCGAATTAAATTC
* * *
10996693 TTAAAATAGCGCCTGTTTCAAATT-AATTC
1 CTAAAATAGCACCT-TTTCGAATTAAATTC
*
10996722 C-AAAATATCACC
1 CTAAAATAGCACC
10996734 CGATCAACGG
Statistics
Matches: 110, Mismatches: 13, Indels: 10
0.83 0.10 0.08
Matches are distributed among these distances:
28 42 0.38
29 37 0.34
30 31 0.28
ACGTcount: A:0.39, C:0.18, G:0.06, T:0.36
Consensus pattern (29 bp):
CTAAAATAGCACCTTTTCGAATTAAATTC
Found at i:10996672 original size:29 final size:30
Alignment explanation
Indices: 10996551--10996733 Score: 182
Period size: 29 Copynumber: 6.3 Consensus size: 30
10996541 CATTTTATAG
* * * *
10996551 AAATAGCACCTTTTTTAAAAT-AACTACTA
1 AAATAGCACCTTTTTCAAATTAAATTCCTA
* * *
10996580 AAATAGTACCTTTATCGAATTAAATTCCTA
1 AAATAGCACCTTTTTCAAATTAAATTCCTA
* *
10996610 AAATAGCA-CTTTTT-GAATTAAATTCTTA
1 AAATAGCACCTTTTTCAAATTAAATTCCTA
* *
10996638 ATATAGCACCTTTTTCGAATTAAA-TCCTA
1 AAATAGCACCTTTTTCAAATTAAATTCCTA
*
10996667 AAATAGCACC-TTTTCAAATTAAATTCTTA
1 AAATAGCACCTTTTTCAAATTAAATTCCTA
* *
10996696 AAATAGCGCCTGTTTCAAATT-AATTCC-A
1 AAATAGCACCTTTTTCAAATTAAATTCCTA
*
10996724 AAATATCACC
1 AAATAGCACC
10996734 CGATCAACGG
Statistics
Matches: 129, Mismatches: 20, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
28 41 0.32
29 58 0.45
30 30 0.23
ACGTcount: A:0.40, C:0.18, G:0.06, T:0.36
Consensus pattern (30 bp):
AAATAGCACCTTTTTCAAATTAAATTCCTA
Found at i:10996721 original size:87 final size:87
Alignment explanation
Indices: 10996553--10996718 Score: 208
Period size: 87 Copynumber: 1.9 Consensus size: 87
10996543 TTTTATAGAA
* * * *
10996553 ATAGCACCTTTTTTAAAATAACTACTAAAATAGTACCTTTATCGAATTAAATTCCTAAAATAGCA
1 ATAGCACCTTTTTCAAAATAAATACTAAAATAGCACCTTTATCAAATTAAATTCCTAAAATAGCA
**
10996618 CTTTTTGAATTAAATTCTTAAT
66 CTTTTCAAATTAAATTCTTAAT
* * * *
10996640 ATAGCACCTTTTTCGAATTAAATCCTAAAATAGCACCTTT-TCAAATTAAATTCTTAAAATAGCG
1 ATAGCACCTTTTTCAAAATAAATACTAAAATAGCACCTTTATCAAATTAAATTCCTAAAATAGC-
*
10996704 CCTGTTTCAAATTAA
65 ACT-TTTCAAATTAA
10996719 TTCCAAAATA
Statistics
Matches: 66, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
86 21 0.32
87 36 0.55
88 9 0.14
ACGTcount: A:0.39, C:0.17, G:0.07, T:0.37
Consensus pattern (87 bp):
ATAGCACCTTTTTCAAAATAAATACTAAAATAGCACCTTTATCAAATTAAATTCCTAAAATAGCA
CTTTTCAAATTAAATTCTTAAT
Found at i:10997812 original size:20 final size:20
Alignment explanation
Indices: 10997783--10997836 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
10997773 ATTGGTTCAC
*
10997783 GGAATATAAGATTATCGGTG
1 GGAATGTAAGATTATCGGTG
10997803 GGAATGTAAGATTATCGGTG
1 GGAATGTAAGATTATCGGTG
*
10997823 AGAATGTAAGATTA
1 GGAATGTAAGATTA
10997837 CTAGGGAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.37, C:0.04, G:0.30, T:0.30
Consensus pattern (20 bp):
GGAATGTAAGATTATCGGTG
Found at i:11004110 original size:21 final size:21
Alignment explanation
Indices: 11004084--11004185 Score: 131
Period size: 21 Copynumber: 5.0 Consensus size: 21
11004074 AACACATAAA
11004084 TCAAATTCGCAACACTGAATT
1 TCAAATTCGCAACACTGAATT
11004105 TCAAATTCGCAACACTGAATT
1 TCAAATTCGCAACACTGAATT
11004126 TCAAATTCGC-A-ACTGAATT
1 TCAAATTCGCAACACTGAATT
* * *
11004145 TCAAATTCGTAACTC-GATTT
1 TCAAATTCGCAACACTGAATT
* *
11004165 TCGAATTCACAACAC-GAATT
1 TCAAATTCGCAACACTGAATT
11004185 T
1 T
11004186 AATTTCACAA
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
19 17 0.24
20 22 0.31
21 32 0.45
ACGTcount: A:0.36, C:0.23, G:0.10, T:0.31
Consensus pattern (21 bp):
TCAAATTCGCAACACTGAATT
Found at i:11004184 original size:40 final size:41
Alignment explanation
Indices: 11004084--11004185 Score: 127
Period size: 40 Copynumber: 2.5 Consensus size: 41
11004074 AACACATAAA
11004084 TCAAATTCGCAACACTGAATTTCAAATTCGCAACACTGAATT
1 TCAAATTCGCAACAC-GAATTTCAAATTCGCAACACTGAATT
* * * *
11004126 TCAAATTCGCAAC-TGAATTTCAAATTCGTAACTC-GATTT
1 TCAAATTCGCAACACGAATTTCAAATTCGCAACACTGAATT
* *
11004165 TCGAATTCACAACACGAATTT
1 TCAAATTCGCAACACGAATTT
11004186 AATTTCACAA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
39 15 0.29
40 24 0.46
42 13 0.25
ACGTcount: A:0.36, C:0.23, G:0.10, T:0.31
Consensus pattern (41 bp):
TCAAATTCGCAACACGAATTTCAAATTCGCAACACTGAATT
Found at i:11005153 original size:24 final size:24
Alignment explanation
Indices: 11005126--11005179 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
11005116 GTATTCGAAA
11005126 TTTGATATTGGTCAATACCCGGAC
1 TTTGATATTGGTCAATACCCGGAC
* * *
11005150 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATATTGGTCAATACCCGGAC
11005174 TTTGAT
1 TTTGAT
11005180 GATGTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATATTGGTCAATACCCGGAC
Found at i:11009650 original size:30 final size:30
Alignment explanation
Indices: 11009593--11009656 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 30
11009583 TCTTCATCAA
* * *
11009593 TTTTCCAAAATTTACGAATTTATCCCAAAC
1 TTTTCCAAAACTTACGAAATGATCCCAAAC
* *
11009623 TTTT-CAAAACTTACGAAATGATCCCCAAT
1 TTTTCCAAAACTTACGAAATGATCCCAAAC
11009652 TTTTC
1 TTTTC
11009657 TAAGGCTTGC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
29 24 0.86
30 4 0.14
ACGTcount: A:0.34, C:0.23, G:0.05, T:0.38
Consensus pattern (30 bp):
TTTTCCAAAACTTACGAAATGATCCCAAAC
Found at i:11012306 original size:21 final size:21
Alignment explanation
Indices: 11012280--11012335 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
11012270 TCTCTTTTTC
*
11012280 TTTTCTTTCTCCTTTTCATTT
1 TTTTCTTTCTCATTTTCATTT
11012301 TTTTC-TTCTTCATTTTCATTT
1 TTTTCTTTC-TCATTTTCATTT
*
11012322 TCTT-TTTCT-ATTTT
1 TTTTCTTTCTCATTTT
11012336 TTTCTTCTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
19 5 0.16
20 4 0.13
21 22 0.71
ACGTcount: A:0.07, C:0.20, G:0.00, T:0.73
Consensus pattern (21 bp):
TTTTCTTTCTCATTTTCATTT
Found at i:11012330 original size:50 final size:48
Alignment explanation
Indices: 11012247--11012361 Score: 126
Period size: 50 Copynumber: 2.3 Consensus size: 48
11012237 CACAAGTGAA
*
11012247 TATTTTTTT-TATCTCTCATTTTTTCTCTTTTTCT-TTTCTTTCTCCTTT
1 TATTTTTTTCT-TCT-TCATTTTTTCTCTTTTTCTATTTCTTTCTCCTTC
* * *
11012295 TCATTTTTTTCTTCTTCATTTTCATTTTCTTTTTCTATTTTTTTCTTCTTC
1 T-ATTTTTTTCTTCTTCATTTT--TTCTCTTTTTCTATTTCTTTCTCCTTC
*
11012346 TGTTTTTTTCTTCTTC
1 TATTTTTTTCTTCTTC
11012362 TTATAATATA
Statistics
Matches: 57, Mismatches: 5, Indels: 8
0.81 0.07 0.11
Matches are distributed among these distances:
48 8 0.14
49 11 0.19
50 26 0.46
51 12 0.21
ACGTcount: A:0.06, C:0.20, G:0.01, T:0.73
Consensus pattern (48 bp):
TATTTTTTTCTTCTTCATTTTTTCTCTTTTTCTATTTCTTTCTCCTTC
Found at i:11012335 original size:34 final size:32
Alignment explanation
Indices: 11012262--11012356 Score: 111
Period size: 33 Copynumber: 2.8 Consensus size: 32
11012252 TTTTTATCTC
*
11012262 TCATTTTTTCTCTTTTTCTTTTCTTTCTCCTTT
1 TCATTTTTT-TCTTCTTCTTTTCTTTCTCCTTT
*
11012295 TCATTTTTTTCTTCTTCATTTTCATTT-TCTTTT
1 TCATTTTTTTCTTCTTC-TTTTC-TTTCTCCTTT
*
11012328 TCTATTTTTTTCTTCTTCTGTTTTTTTCT
1 TC-ATTTTTTTCTTCTTCT-TTTCTTTCT
11012357 TCTTCTTATA
Statistics
Matches: 54, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
32 7 0.13
33 25 0.46
34 22 0.41
ACGTcount: A:0.05, C:0.20, G:0.01, T:0.74
Consensus pattern (32 bp):
TCATTTTTTTCTTCTTCTTTTCTTTCTCCTTT
Found at i:11013464 original size:6 final size:6
Alignment explanation
Indices: 11013453--11013477 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
11013443 ACACTTGTAT
11013453 CATGAC CATGAC CATGAC CATGAC C
1 CATGAC CATGAC CATGAC CATGAC C
11013478 CATAGGTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.36, G:0.16, T:0.16
Consensus pattern (6 bp):
CATGAC
Found at i:11014668 original size:7 final size:7
Alignment explanation
Indices: 11014656--11014703 Score: 51
Period size: 7 Copynumber: 6.3 Consensus size: 7
11014646 TTTTTAATTA
11014656 TGAATAG
1 TGAATAG
11014663 TGAATAG
1 TGAATAG
11014670 TACCCGAATAG
1 T----GAATAG
11014681 TGAATAG
1 TGAATAG
11014688 TGAATAG
1 TGAATAG
*
11014695 TGAACAG
1 TGAATAG
11014702 TG
1 TG
11014704 GGGGAATCGA
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
7 29 0.81
11 7 0.19
ACGTcount: A:0.40, C:0.08, G:0.27, T:0.25
Consensus pattern (7 bp):
TGAATAG
Found at i:11016910 original size:30 final size:30
Alignment explanation
Indices: 11016853--11016916 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 30
11016843 TCTTCATCAA
* * *
11016853 TTTTCCAAAATTTACGAATTTATCCCAAAC
1 TTTTCCAAAACTTACGAAATGATCCCAAAC
* *
11016883 TTTT-CAAAACTTACGAAATGATCCCCAAT
1 TTTTCCAAAACTTACGAAATGATCCCAAAC
11016912 TTTTC
1 TTTTC
11016917 TAAGGCTTGC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
29 24 0.86
30 4 0.14
ACGTcount: A:0.34, C:0.23, G:0.05, T:0.38
Consensus pattern (30 bp):
TTTTCCAAAACTTACGAAATGATCCCAAAC
Found at i:11018019 original size:13 final size:13
Alignment explanation
Indices: 11017978--11018020 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
11017968 TTTTCTATAA
*
11017978 TAATTATAATCCT
1 TAATTATAATCAT
**
11017991 TATATTATAAAAAT
1 TA-ATTATAATCAT
11018005 TAATTATAATCAT
1 TAATTATAATCAT
11018018 TAA
1 TAA
11018021 ATTAATTTCA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
13 14 0.58
14 10 0.42
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (13 bp):
TAATTATAATCAT
Found at i:11018674 original size:182 final size:181
Alignment explanation
Indices: 11018321--11018798 Score: 559
Period size: 182 Copynumber: 2.6 Consensus size: 181
11018311 ATATAAATGA
* * * * * * * * *
11018321 AAAAATGTATCGCTCCATAGCAATATAATAAGTAGAAATATGATAAAACCGATTTC-ATTATGAT
1 AAAAACGTATCGATCCATAACAATATAACAGGTAAAAATATGA-CAAACCGATATCGA-AATGAT
* * *
11018385 AAAACCGGTAAACCGCTACTGGATATATTGAAAGTATCGATTA-GATTTAA-ATAAGTATCGACA
64 AAAACCGGTAAAGCGCTACCGGATATATTGAAAGTGTCGA-TACG--TTAATATAAGTATCGACA
* * *
11018448 CTTTTGGAATTTAAAAGAGAAGAAGTAATAGCGCCTATAAAGTGTCGATACTTTAT
126 CTTTCGGAATTTAAAAGAGAAGAAGTAATAGCACCTAAAAAGTGTCGATACTTTAT
* * * *
11018504 AAAAACGTATCGATCCATAACAATATAACATGTATAAGTATGACAAAACCGGTCA-CGAAATGAT
1 AAAAACGTATCGATCCATAACAATATAACAGGTAAAAATATGAC-AAACCGAT-ATCGAAATGAT
* *
11018568 AAAACCAGTAAAGAGCTACCGGATATATTGAAAGTGTCGATACGTTAATATAAGTATCGACACTT
64 AAAACCGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACGTTAATATAAGTATCGACACTT
* * *
11018633 TCGTAATTTAAAAGAGAAGAAGTTATAGCACCTAAAAAGTGTTGATACTTTAT
129 TCGGAATTTAAAAGAGAAGAAGTAATAGCACCTAAAAAGTGTCGATACTTTAT
* * * * *
11018686 GAAAATGTATCGATCCATAACAATATAATAGGTAAAAATATGACAAACCGATATTGAAATGACAA
1 AAAAACGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAACCGATATCGAAATGATAA
* * * * *
11018751 AACCGGTAAAGCGCTACCGGTTATGTTTAAAGTGTCGGTACTTTAATA
66 AACCGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACGTTAATA
11018799 AGTACGCGTA
Statistics
Matches: 251, Mismatches: 38, Indels: 14
0.83 0.13 0.05
Matches are distributed among these distances:
180 1 0.00
181 61 0.24
182 103 0.41
183 85 0.34
184 1 0.00
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.28
Consensus pattern (181 bp):
AAAAACGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAACCGATATCGAAATGATAA
AACCGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACGTTAATATAAGTATCGACACTTTC
GGAATTTAAAAGAGAAGAAGTAATAGCACCTAAAAAGTGTCGATACTTTAT
Found at i:11021341 original size:18 final size:18
Alignment explanation
Indices: 11021318--11021356 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
11021308 GAGAAAATTT
*
11021318 GAAGAAGAAAAGATGGAG
1 GAAGAAGAAAAGATAGAG
11021336 GAAGAAGAAAAGATAGAG
1 GAAGAAGAAAAGATAGAG
11021354 GAA
1 GAA
11021357 ATGAGGAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.36, T:0.05
Consensus pattern (18 bp):
GAAGAAGAAAAGATAGAG
Found at i:11021700 original size:20 final size:17
Alignment explanation
Indices: 11021658--11021690 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
11021648 TTTAAATATT
11021658 TCATGAAAAGATATTAA
1 TCATGAAAAGATATTAA
11021675 TCATGAAAAGATATTA
1 TCATGAAAAGATATTA
11021691 TTCCTAATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.52, C:0.06, G:0.12, T:0.30
Consensus pattern (17 bp):
TCATGAAAAGATATTAA
Found at i:11022866 original size:19 final size:20
Alignment explanation
Indices: 11022842--11022891 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
11022832 AAATGTAGGG
11022842 TTAATTTTGTATAA-GATTT
1 TTAATTTTGTATAATGATTT
11022861 TTAATTTTGTA-AATGATTT
1 TTAATTTTGTATAATGATTT
*
11022880 ATAATTTTGTAT
1 TTAATTTTGTAT
11022892 GTGAATGTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 2 0.07
19 26 0.93
ACGTcount: A:0.32, C:0.00, G:0.10, T:0.58
Consensus pattern (20 bp):
TTAATTTTGTATAATGATTT
Found at i:11023562 original size:198 final size:197
Alignment explanation
Indices: 11023224--11023992 Score: 1256
Period size: 198 Copynumber: 3.9 Consensus size: 197
11023214 TGGTAAACAT
*
11023224 ATGTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAGAACCATAATTATAATGTAA
1 ATGTGTCGATACATTTAT-AAAAGTATCGATCCCAAAAACATCGAGACCCATAATTATAATGTAA
* ** *
11023289 TAGGTAAGTTATGAATCTAACATGTCTAAATACACCGGTTTATGAGAAAACATGTGTACATAAAG
65 TAGGTAAATTATGAATCTAACCGGTCTAAATACACCGGTTTATGAGAAAACAGGTGTACATAAAG
* * * *
11023354 TATCGACACTTGTTGAATTTGTTTCGATACTTTTTGTCCAGAATGATTTCCTTACCAAGATCATG
130 TATCGACACTTGTTGAATTTGTGTCGATACTTTGTGTCCAGAATGATTTCCTTACCAAGGTCA-C
*
11023419 GA-A
194 CATA
11023422 ATGTGTCGATACATTTATAACAAGTATCGATCCCAAAAACATCGAGACCCATAATTATAATGTAA
1 ATGTGTCGATACATTTATAA-AAGTATCGATCCCAAAAACATCGAGACCCATAATTATAATGTAA
* *
11023487 TACGTAAATTATGAATCTAACCGGTCTAAACACACCGGTTTATGAGAAAACAGGTGTACATAAAG
65 TAGGTAAATTATGAATCTAACCGGTCTAAATACACCGGTTTATGAGAAAACAGGTGTACATAAAG
11023552 TATCGACACTTGTTGAATTTGTGTCGATACTTTGTGTCCAGAATGATTTCCTTACCAAGGTCACC
130 TATCGACACTTGTTGAATTTGTGTCGATACTTTGTGTCCAGAATGATTTCCTTACCAAGGTCACC
11023617 ATA
195 ATA
*
11023620 ATGTGTTGATACATTTATAAAATGTATCGATCCCAAAAACATCGAGACCCATAATTATAATGTAA
1 ATGTGTCGATACATTTATAAAA-GTATCGATCCCAAAAACATCGAGACCCATAATTATAATGTAA
* * *
11023685 TAGGTAAATTATCAATCTAACCGGTCTAAATATACCGATTTATGAGAAAACAGGTGTACATAAAG
65 TAGGTAAATTATGAATCTAACCGGTCTAAATACACCGGTTTATGAGAAAACAGGTGTACATAAAG
*
11023750 TATCGACACTTGTTTAATTTGTGTCGATACTTTGTGTCCAGAATGATTTCCTTACCAAGGTCACC
130 TATCGACACTTGTTGAATTTGTGTCGATACTTTGTGTCCAGAATGATTTCCTTACCAAGGTCACC
11023815 ATA
195 ATA
*
11023818 ATGTGTCGATACATTTATAATAAGTATCGATTCCAAAAACATCGAGACCCATAATTATAATGTAA
1 ATGTGTCGATACATTTATAA-AAGTATCGATCCCAAAAACATCGAGACCCATAATTATAATGTAA
*
11023883 TAGGTAAATTATGAATCTAACCGGTCTAAATACACCGGTTTATGAGAAAACATGTGTACATAAAG
65 TAGGTAAATTATGAATCTAACCGGTCTAAATACACCGGTTTATGAGAAAACAGGTGTACATAAAG
* * *
11023948 TATCTATACTCT-TTGAATTTTTGTCGATACGTTT-TGTCCAGAATG
130 TATCGACACT-TGTTGAATTTGTGTCGATAC-TTTGTGTCCAGAATG
11023993 TAAATGGTCA
Statistics
Matches: 536, Mismatches: 29, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
197 5 0.01
198 525 0.98
199 6 0.01
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (197 bp):
ATGTGTCGATACATTTATAAAAGTATCGATCCCAAAAACATCGAGACCCATAATTATAATGTAAT
AGGTAAATTATGAATCTAACCGGTCTAAATACACCGGTTTATGAGAAAACAGGTGTACATAAAGT
ATCGACACTTGTTGAATTTGTGTCGATACTTTGTGTCCAGAATGATTTCCTTACCAAGGTCACCA
TA
Found at i:11024071 original size:396 final size:395
Alignment explanation
Indices: 11023226--11024122 Score: 1270
Period size: 396 Copynumber: 2.3 Consensus size: 395
11023216 GTAAACATAT
11023226 GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAGAACCATAATTATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGA-AACCATAATTATAATGTAATA
* * ** * * *
11023291 GGTAAGTTATGAATCTAACATGTCTAAATACACCGGTTTATGAGAAAACATGTGTACATAAAGTA
65 GGTAAATTATCAATCTAACCGGTCTAAATATACCGATTTATGAGAAAACAGGTGTACATAAAGTA
* * **
11023356 TCGACACTTGTTGAATTTGTTTCGATACTTTTTGTCCAGAATGATTTCCTTACCAAGATCATGGA
130 TCGACACTTGTTGAATTTGTGTCGATACTTTGTGTCCAGAATGATTTCCTTACCAAGATCATCCA
11023421 AATGTGTCGATACATTTATAACAAGTATCGATCCCAAAAACATCGAGACCCATAATTATAATGTA
195 AATGTGTCGATACATTTATAACAAGTATCGATCCCAAAAACATCGAGACCCATAATTATAATGTA
11023486 ATACGTAAATTATGAATCTAACCGGTCTAAACACACCGGTTTATGAGAAAACAGGTGTACATAAA
260 ATACGTAAATTATGAATCTAACCGGTCTAAACACACCGGTTTATGAGAAAACAGGTGTACATAAA
** * * *
11023551 GTATCGACACTTGTTGAATTTGTGTCGATACTTTGTGTCCAGAATGATTTCCTTACCAAGGTCAC
325 GTATCGACACTTGTTGAATTTGTGTCGATACTTTGTGTCCAGAATGAAATCCTCACAAAAGTCAC
* * *
11023616 CATAAT
390 AAAAAA
* * *
11023622 GTGTTGATACATTTATAAAATGTATCGATCCCAAAAACATCGAGACCCATAATTATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGA-AACCATAATTATAATGTAATA
11023687 GGTAAATTATCAATCTAACCGGTCTAAATATACCGATTTATGAGAAAACAGGTGTACATAAAGTA
65 GGTAAATTATCAATCTAACCGGTCTAAATATACCGATTTATGAGAAAACAGGTGTACATAAAGTA
* *
11023752 TCGACACTTGTTTAATTTGTGTCGATACTTTGTGTCCAGAATGATTTCCTTACCAAGGTCA-CCA
130 TCGACACTTGTTGAATTTGTGTCGATACTTTGTGTCCAGAATGATTTCCTTACCAAGATCATCCA
* *
11023816 TAATGTGTCGATACATTTATAATAAGTATCGATTCCAAAAACATCGAGACCCATAATTATAATGT
195 -AATGTGTCGATACATTTATAACAAGTATCGATCCCAAAAACATCGAGACCCATAATTATAATGT
* * *
11023881 AATAGGTAAATTATGAATCTAACCGGTCTAAATACACCGGTTTATGAGAAAACATGTGTACATAA
259 AATACGTAAATTATGAATCTAACCGGTCTAAACACACCGGTTTATGAGAAAACAGGTGTACATAA
* * * **
11023946 AGTATCTATACTCT-TTGAATTTTTGTCGATACGTTT-TGTCCAGAATGTAAATGGTCA-AAAAG
324 AGTATCGACACT-TGTTGAATTTGTGTCGATAC-TTTGTGTCCAGAATG-AAATCCTCACAAAAG
11024008 TACACAAAAAA
386 T-CACAAAAAA
* *
11024019 GTGTCGATACATTTATAAAAAGTATCGAT-CCTAAAACAAT-GAAATTCATAATT-TGAATGTAA
1 GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAAC-ATCGAAA-CCATAATTAT-AATGTAA
* * * * *
11024081 TAGGT-CATTTTGCAATGTAACCGGTATAAATATACCTATTTA
63 TAGGTAAATTAT-CAATCTAACCGGTCTAAATATACCGATTTA
11024123 ATTTGGAACA
Statistics
Matches: 448, Mismatches: 44, Indels: 18
0.88 0.09 0.04
Matches are distributed among these distances:
395 7 0.02
396 398 0.89
397 43 0.10
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (395 bp):
GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCATAATTATAATGTAATAG
GTAAATTATCAATCTAACCGGTCTAAATATACCGATTTATGAGAAAACAGGTGTACATAAAGTAT
CGACACTTGTTGAATTTGTGTCGATACTTTGTGTCCAGAATGATTTCCTTACCAAGATCATCCAA
ATGTGTCGATACATTTATAACAAGTATCGATCCCAAAAACATCGAGACCCATAATTATAATGTAA
TACGTAAATTATGAATCTAACCGGTCTAAACACACCGGTTTATGAGAAAACAGGTGTACATAAAG
TATCGACACTTGTTGAATTTGTGTCGATACTTTGTGTCCAGAATGAAATCCTCACAAAAGTCACA
AAAAA
Found at i:11024484 original size:15 final size:15
Alignment explanation
Indices: 11024463--11024500 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
11024453 CAGAATCAGG
11024463 GCTCTTCTCAACCCA
1 GCTCTTCTCAACCCA
*
11024478 TCTCTTCTCAACCCA
1 GCTCTTCTCAACCCA
11024493 GCTCTTCT
1 GCTCTTCT
11024501 GTGGAAATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.16, C:0.45, G:0.05, T:0.34
Consensus pattern (15 bp):
GCTCTTCTCAACCCA
Found at i:11025656 original size:3 final size:3
Alignment explanation
Indices: 11025631--11025671 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
11025621 GTCAATGAAT
* * *
11025631 ATG ACG ATG AAG ATG AAG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
11025672 CCAAACAAGT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.39, C:0.02, G:0.32, T:0.27
Consensus pattern (3 bp):
ATG
Done.