Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008747.1 Hibiscus syriacus cultivar Beakdansim tig00111837_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12616935
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 44 of 51
Found at i:11032723 original size:21 final size:23
Alignment explanation
Indices: 11032697--11032747 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
11032687 AGGGAGTCGA
11032697 TCCCCCCTTG-A-GGGAACCGAT
1 TCCCCCCTTGAAGGGGAACCGAT
* *
11032718 TCCCCCTTTGAAGGGGAACTGAT
1 TCCCCCCTTGAAGGGGAACCGAT
11032741 TCCCCCC
1 TCCCCCC
11032748 ACAGGGGAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 9 0.36
22 1 0.04
23 15 0.60
ACGTcount: A:0.18, C:0.39, G:0.22, T:0.22
Consensus pattern (23 bp):
TCCCCCCTTGAAGGGGAACCGAT
Found at i:11032766 original size:21 final size:21
Alignment explanation
Indices: 11032729--11032768 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
11032719 CCCCCTTTGA
*
11032729 AGGGGAACTGATTCCCCCCAC
1 AGGGGAACTGATACCCCCCAC
11032750 AGGGGAA-TCGATACCCCCC
1 AGGGGAACT-GATACCCCCC
11032769 TAGGGTTCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.25, C:0.38, G:0.25, T:0.12
Consensus pattern (21 bp):
AGGGGAACTGATACCCCCCAC
Found at i:11036425 original size:22 final size:21
Alignment explanation
Indices: 11036399--11036444 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
11036389 AGAAAAGAGG
11036399 TATACATAATGTATCGACACTT
1 TATACAT-ATGTATCGACACTT
* * *
11036421 TATACATTTGTGTCGATACTT
1 TATACATATGTATCGACACTT
11036442 TAT
1 TAT
11036445 GTCCATAATG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.43
Consensus pattern (21 bp):
TATACATATGTATCGACACTT
Found at i:11036628 original size:205 final size:201
Alignment explanation
Indices: 11036233--11037616 Score: 817
Period size: 197 Copynumber: 7.0 Consensus size: 201
11036223 TTATTCAATC
* *
11036233 GTGTCGATACATGTTGTCCAGAATGTATTTCCAAA-C----CAAGTGCTCGAACA-AAGTGTCGA
1 GTGTCGATACATGTTGTCCAGAATGTATTTCCAAACCAAAACAAGTTCAC-AA-ATAAGTGTCGA
* * *
11036292 TACATTTATAAAAAGTATCGATCCCAACATCGAGACCAATAATTATAATGTAATAGGTAAAATAA
64 TACATTTATAAAAAGTATCGATCCCAACATCAAAACCAATAACTATAATGTAATAGGTAAAATAA
11036357 CAATGTAACTGGTCTAAATATACCAGTTTATGAGAAAAGAGGTATACATAATGTATCGACACTTT
129 CAATGTAACTGGTCTAAATATACCAGTTTATGAGAAAAGAGGTATACATAATGTATCGACACTTT
11036422 ATACATTT
194 ATACATTT
* *
11036430 GTGTCGATAC-TTTATGTCCATAATGTATTTTCC-AACCAAAACAAGTTCACAAATAAGTGTCGA
1 GTGTCGATACATGT-TGTCCAGAATGTA-TTTCCAAACCAAAACAAGTTCACAAATAAGTGTCGA
** * * * **
11036493 TACATTTATATCAAGTGTCGATCCCAAAAACATCAAAACCCATAACTATAATGTAATAGGTCACT
64 TACATTTATAAAAAGTATCGATCCC---AACATCAAAACCAATAACTATAATGTAATAGGTAAAA
* * * * * * *
11036558 TTACAATGTAA-TCGGTTTAAATTTACCGGTTTTATGAGAAAATATGTCTACA-ATATGTATCGA
126 TAACAATGTAACT-GGTCTAAATATACCAG-TTTATGAGAAAAGAGGTATACATA-ATGTATCGA
*
11036621 CACTTTATTCATTT
188 CACTTTATACATTT
* *
11036635 GTGTCGATACATGTTGTCCAGAATGTATTTCCAAA-C----CAAGTGCACGAAAAAAGTGTCGAT
1 GTGTCGATACATGTTGTCCAGAATGTATTTCCAAACCAAAACAAGTTCAC-AAATAAGTGTCGAT
** * * *
11036695 -C-----GCAAAA--A-C-AT-CGAA-A-C---A-C-ATAATTATAATGTAATAGGTAACATAAC
65 ACATTTATAAAAAGTATCGATCCCAACATCAAAACCAATAACTATAATGTAATAGGTAAAATAAC
* * ** * *
11036742 AATGTAACCGGTCTAAATATACC-GGTTAT--TTAAAGAATGTATACATAATGTATCGATACTTT
130 AATGTAACTGGTCTAAATATACCAGTTTATGAGAAAAG-AGGTATACATAATGTATCGACACTTT
11036804 ATACATTT
194 ATACATTT
* * * ** *
11036812 GTGTCGACAC-TTTATGTCCATAATAAAATTT-----TC-AAACAAGTTCACGAAA-AAGTGTCG
1 GTGTCGATACATGT-TGTCCAGAAT-GTATTTCCAAACCAAAACAAGTTCAC-AAATAAGTGTCG
* * * *
11036869 ATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAA-CACATAATTATAATGTAATAGGTAA
63 ATACATTTATAAAAAGTATCGATCCC---AACATCAAAACCA-ATAACTATAATGTAATAGGTAA
* * * * * * *
11036933 CATAACAATGTAACCGATCTAAATATACC-GGTTATTAAAAAAGAAAGCTATACAT-ATGTATCG
124 AATAACAATGTAACTGGTCTAAATATACCAGTTTATGAGAAAAG--AGGTATACATAATGTATCG
*
11036996 ATACTTTATACATTT
187 ACACTTTATACATTT
* * * * * * * *
11037011 GTATCGACAC-TTTATGTCCATAATAATTTTTCCAAA-C----CAAGTGCACGAAAAAAGTGTCG
1 GTGTCGATACATGT-TGTCCAGAAT-GTATTTCCAAACCAAAACAAGTTCAC-AAATAAGTGTCG
* * * * *
11037070 ATACATTTATAACAAGTGTCTATCCCAAAAACATCGAAA-CACATAATTATAATGTAATAGGTAA
63 ATACATTTATAAAAAGTATCGATCCC---AACATCAAAACCA-ATAACTATAATGTAATAGGTAA
* * * * * *
11037134 CATAACAATGTAACCGGTCTAAATATACC-GGTTATTA-AAAAAAGGTATACATAATGTATCGAT
124 AATAACAATGTAACTGGTCTAAATATACCAGTTTATGAGAAAAGAGGTATACATAATGTATCGAC
11037197 ACTTTATACATTT
189 ACTTTATACATTT
* * * ** *
11037210 GTGTCGACAC-TTTATGTCCATAATAAATTT----TCC-AAACAAGTTCACAAA-AGAGTGTCGA
1 GTGTCGATACATGT-TGTCCAGAATGTATTTCCAAACCAAAACAAGTTCACAAATA-AGTGTCGA
* * * ** * *
11037268 TACATTTATAACAAGTGTCGATCCCAAAAACATCGAAACCCGTAATTATAATGTAATAGGTAACA
64 TACATTTATAAAAAGTATCGATCCC---AACATCAAAACCAATAACTATAATGTAATAGGTAAAA
* * * * * * *
11037333 TAACAATGTAACCGATCTAAATATA-AAGGTTATTA-AAAAAAGGTATACATAATGTATCGATAC
126 TAACAATGTAACTGGTCTAAATATACCAGTTTATGAGAAAAGAGGTATACATAATGTATCGACAC
11037396 TTTATACATTT
191 TTTATACATTT
* * * ** **
11037407 GTGTCGACAC-TTTATGTCCATAATAAATTT----TTC-AAACAAGTTCACGAAA-AAGTGTCGA
1 GTGTCGATACATGT-TGTCCAGAATGTATTTCCAAACCAAAACAAGTTCAC-AAATAAGTGTCGA
* * * * * ** * * *
11037465 TAGATTTAGAAAAAGTGTCGATCCTAAAAAT-ATTGAAACCCGTAATTATAATGTAATAGGTCAC
64 TACATTTATAAAAAGTATCGATCC-CAACATCA---AAACCAATAACTATAATGTAATAGGTAAA
* * * * * * * *
11037529 TTTACAATGTAACCGGTTTAAATTTACCGGTTTTATGAGAAAATAGGTTTACATAATGTATCGAC
125 ATAACAATGTAACTGGTCTAAATATACCAG-TTTATGAGAAAAGAGGTATACATAATGTATCGAC
* * *
11037594 ACTTTTTAAATTA
189 ACTTTATACATTT
11037607 GTGTCGATAC
1 GTGTCGATAC
11037617 TTTTTAAAAT
Statistics
Matches: 1011, Mismatches: 104, Indels: 141
0.80 0.08 0.11
Matches are distributed among these distances:
174 1 0.00
176 15 0.01
177 60 0.06
178 9 0.01
179 1 0.00
180 43 0.04
181 1 0.00
182 4 0.00
185 2 0.00
186 3 0.00
187 3 0.00
190 3 0.00
191 3 0.00
192 2 0.00
195 9 0.01
196 3 0.00
197 344 0.34
198 33 0.03
199 106 0.10
200 77 0.08
201 153 0.15
202 7 0.01
203 2 0.00
204 60 0.06
205 65 0.06
206 2 0.00
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (201 bp):
GTGTCGATACATGTTGTCCAGAATGTATTTCCAAACCAAAACAAGTTCACAAATAAGTGTCGATA
CATTTATAAAAAGTATCGATCCCAACATCAAAACCAATAACTATAATGTAATAGGTAAAATAACA
ATGTAACTGGTCTAAATATACCAGTTTATGAGAAAAGAGGTATACATAATGTATCGACACTTTAT
ACATTT
Found at i:11036806 original size:22 final size:21
Alignment explanation
Indices: 11036781--11036826 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
11036771 TTAAAGAATG
*
11036781 TATACATAATGTATCGATACTT
1 TATACAT-ATGTATCGACACTT
* *
11036803 TATACATTTGTGTCGACACTT
1 TATACATATGTATCGACACTT
11036824 TAT
1 TAT
11036827 GTCCATAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.43
Consensus pattern (21 bp):
TATACATATGTATCGACACTT
Found at i:11037007 original size:21 final size:21
Alignment explanation
Indices: 11036981--11037025 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
11036971 AAAAGAAAGC
*
11036981 TATACATATGTATCGATACTT
1 TATACATATGTATCGACACTT
*
11037002 TATACATTTGTATCGACACTT
1 TATACATATGTATCGACACTT
11037023 TAT
1 TAT
11037026 GTCCATAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.31, C:0.16, G:0.09, T:0.44
Consensus pattern (21 bp):
TATACATATGTATCGACACTT
Found at i:11037204 original size:22 final size:21
Alignment explanation
Indices: 11037179--11037224 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
11037169 TAAAAAAAGG
*
11037179 TATACATAATGTATCGATACTT
1 TATACAT-ATGTATCGACACTT
* *
11037201 TATACATTTGTGTCGACACTT
1 TATACATATGTATCGACACTT
11037222 TAT
1 TAT
11037225 GTCCATAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.43
Consensus pattern (21 bp):
TATACATATGTATCGACACTT
Found at i:11037220 original size:398 final size:394
Alignment explanation
Indices: 11036682--11037619 Score: 1454
Period size: 398 Copynumber: 2.4 Consensus size: 394
11036672 AAGTGCACGA
*
11036682 AAAAAGTGTCGATCGCAAAAACATCGAAACACATAATTATAATGTAATAGGTAACATAACAATGT
1 AAAAAGTGTCGATCCCAAAAACATCGAAACACATAATTATAATGTAATAGGTAACATAACAATGT
* * *
11036747 AACCGGTCTAAATATACCGGTTATTTAAAGAATGTATACATAATGTATCGATACTTTATACATTT
66 AACCGGTCTAAATATACCGGTTATTAAAAAAAGGTATACATAATGTATCGATACTTTATACATTT
11036812 GTGTCGACACTTTATGTCCATAATAAAATTTT-CAAACAAGTTCACGAAAA-AGTGTCGATACAT
131 GTGTCGACACTTTATGTCCATAAT-AAATTTTCCAAACAAGTTCAC-AAAAGAGTGTCGATACAT
11036875 TTATAACAAGTGTCGATCCCAAAAACATCGAAACACATAATTATAATGTAATAGGTAACATAACA
194 TTATAACAAGTGTCGATCCCAAAAACATCGAAACACATAATTATAATGTAATAGGTAACATAACA
**
11036940 ATGTAACCGATCTAAATATACCGGTTATTAAAAAAGAAAGCTATACAT-ATGTATCGATACTTTA
259 ATGTAACCGATCTAAATATAAAGGTTATT--AAAA-AAAGCTATACATAATGTATCGATACTTTA
11037004 TACATTTGTATCGACACTTTATGTCCATAAT-AATTTTTCCAAACCAAGTGCACGAAAAAAGTGT
321 TACATTTGTATCGACACTTTATGTCCATAATAAATTTTT-CAAA-CAAGTGCACG-AAAAAGTGT
*
11037068 CGATACATTTAT
383 CGATACATTTAG
* *
11037080 AACAAGTGTCTATCCCAAAAACATCGAAACACATAATTATAATGTAATAGGTAACATAACAATGT
1 AAAAAGTGTCGATCCCAAAAACATCGAAACACATAATTATAATGTAATAGGTAACATAACAATGT
11037145 AACCGGTCTAAATATACCGGTTATTAAAAAAAGGTATACATAATGTATCGATACTTTATACATTT
66 AACCGGTCTAAATATACCGGTTATTAAAAAAAGGTATACATAATGTATCGATACTTTATACATTT
11037210 GTGTCGACACTTTATGTCCATAATAAATTTTCCAAACAAGTTCACAAAAGAGTGTCGATACATTT
131 GTGTCGACACTTTATGTCCATAATAAATTTTCCAAACAAGTTCACAAAAGAGTGTCGATACATTT
* *
11037275 ATAACAAGTGTCGATCCCAAAAACATCGAAACCCGTAATTATAATGTAATAGGTAACATAACAAT
196 ATAACAAGTGTCGATCCCAAAAACATCGAAACACATAATTATAATGTAATAGGTAACATAACAAT
*
11037340 GTAACCGATCTAAATATAAAGGTTATTAAAAAAAGGTATACATAATGTATCGATACTTTATACAT
261 GTAACCGATCTAAATATAAAGGTTATTAAAAAAAGCTATACATAATGTATCGATACTTTATACAT
* * *
11037405 TTGTGTCGACACTTTATGTCCATAATAAATTTTTCAAACAAGTTCACGAAAAAGTGTCGATAGAT
326 TTGTATCGACACTTTATGTCCATAATAAATTTTTCAAACAAGTGCACGAAAAAGTGTCGATACAT
11037470 TTAG
391 TTAG
* * * * * * * *
11037474 AAAAAGTGTCGATCCTAAAAATATTGAAACCCGTAATTATAATGTAATAGGTCACTTTACAATGT
1 AAAAAGTGTCGATCCCAAAAACATCGAAACACATAATTATAATGTAATAGGTAACATAACAATGT
* * * * * *
11037539 AACCGGTTTAAATTTACCGGTT-TTATGAGAAAATAGGTTTACATAATGTATCGACACTTTTTAA
66 AACCGGTCTAAATATACCGGTTATTA--A-AAAA-AGGTATACATAATGTATCGATACTTTATAC
* *
11037603 ATTAGTGTCGATACTTT
127 ATTTGTGTCGACACTTT
11037620 TTAAAATTAC
Statistics
Matches: 499, Mismatches: 33, Indels: 17
0.91 0.06 0.03
Matches are distributed among these distances:
393 3 0.01
394 94 0.19
395 21 0.04
396 58 0.12
397 59 0.12
398 264 0.53
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (394 bp):
AAAAAGTGTCGATCCCAAAAACATCGAAACACATAATTATAATGTAATAGGTAACATAACAATGT
AACCGGTCTAAATATACCGGTTATTAAAAAAAGGTATACATAATGTATCGATACTTTATACATTT
GTGTCGACACTTTATGTCCATAATAAATTTTCCAAACAAGTTCACAAAAGAGTGTCGATACATTT
ATAACAAGTGTCGATCCCAAAAACATCGAAACACATAATTATAATGTAATAGGTAACATAACAAT
GTAACCGATCTAAATATAAAGGTTATTAAAAAAAGCTATACATAATGTATCGATACTTTATACAT
TTGTATCGACACTTTATGTCCATAATAAATTTTTCAAACAAGTGCACGAAAAAGTGTCGATACAT
TTAG
Found at i:11037354 original size:197 final size:197
Alignment explanation
Indices: 11036685--11037619 Score: 1428
Period size: 197 Copynumber: 4.7 Consensus size: 197
11036675 TGCACGAAAA
*
11036685 AAGTGTCGATCGCAAAAACATCGAAACACATAATTATAATGTAATAGGTAACATAACAATGTAAC
1 AAGTGTCGATCCCAAAAACATCGAAACACATAATTATAATGTAATAGGTAACATAACAATGTAAC
* * *
11036750 CGGTCTAAATATACCGGTTATTTAAAGAATGTATACATAATGTATCGATACTTTATACATTTGTG
66 CGGTCTAAATATACCGGTTATTAAAAAAAGGTATACATAATGTATCGATACTTTATACATTTGTG
11036815 TCGACACTTTATGTCCATAATAAAATTTT-CAAACAAGTTCACGAAAAAGTGTCGATACATTTAT
131 TCGACACTTTATGTCCATAAT-AAATTTTCCAAACAAGTTCACGAAAAAGTGTCGATACATTTAT
11036879 AAC
195 AAC
11036882 AAGTGTCGATCCCAAAAACATCGAAACACATAATTATAATGTAATAGGTAACATAACAATGTAAC
1 AAGTGTCGATCCCAAAAACATCGAAACACATAATTATAATGTAATAGGTAACATAACAATGTAAC
* *
11036947 CGATCTAAATATACCGGTTATTAAAAAAGAAAGCTATACAT-ATGTATCGATACTTTATACATTT
66 CGGTCTAAATATACCGGTTATT--AAAA-AAAGGTATACATAATGTATCGATACTTTATACATTT
* * *
11037011 GTATCGACACTTTATGTCCATAATAATTTTTCCAAACCAAGTGCACGAAAAAAGTGTCGATACAT
128 GTGTCGACACTTTATGTCCATAATAAATTTTCCAAA-CAAGTTCACG-AAAAAGTGTCGATACAT
11037076 TTATAAC
191 TTATAAC
*
11037083 AAGTGTCTATCCCAAAAACATCGAAACACATAATTATAATGTAATAGGTAACATAACAATGTAAC
1 AAGTGTCGATCCCAAAAACATCGAAACACATAATTATAATGTAATAGGTAACATAACAATGTAAC
11037148 CGGTCTAAATATACCGGTTATTAAAAAAAGGTATACATAATGTATCGATACTTTATACATTTGTG
66 CGGTCTAAATATACCGGTTATTAAAAAAAGGTATACATAATGTATCGATACTTTATACATTTGTG
11037213 TCGACACTTTATGTCCATAATAAATTTTCCAAACAAGTTCAC-AAAAGAGTGTCGATACATTTAT
131 TCGACACTTTATGTCCATAATAAATTTTCCAAACAAGTTCACGAAAA-AGTGTCGATACATTTAT
11037277 AAC
195 AAC
* *
11037280 AAGTGTCGATCCCAAAAACATCGAAACCCGTAATTATAATGTAATAGGTAACATAACAATGTAAC
1 AAGTGTCGATCCCAAAAACATCGAAACACATAATTATAATGTAATAGGTAACATAACAATGTAAC
* **
11037345 CGATCTAAATATAAAGGTTATTAAAAAAAGGTATACATAATGTATCGATACTTTATACATTTGTG
66 CGGTCTAAATATACCGGTTATTAAAAAAAGGTATACATAATGTATCGATACTTTATACATTTGTG
* * *
11037410 TCGACACTTTATGTCCATAATAAATTTTTCAAACAAGTTCACGAAAAAGTGTCGATAGATTTAGA
131 TCGACACTTTATGTCCATAATAAATTTTCCAAACAAGTTCACGAAAAAGTGTCGATACATTTATA
*
11037475 AA
196 AC
* * * * * * * *
11037477 AAGTGTCGATCCTAAAAATATTGAAACCCGTAATTATAATGTAATAGGTCACTTTACAATGTAAC
1 AAGTGTCGATCCCAAAAACATCGAAACACATAATTATAATGTAATAGGTAACATAACAATGTAAC
* * * * * *
11037542 CGGTTTAAATTTACCGGTT-TTATGAGAAAATAGGTTTACATAATGTATCGACACTTTTTAAATT
66 CGGTCTAAATATACCGGTTATTA--A-AAAA-AGGTATACATAATGTATCGATACTTTATACATT
* *
11037606 AGTGTCGATACTTT
127 TGTGTCGACACTTT
11037620 TTAAAATTAC
Statistics
Matches: 683, Mismatches: 42, Indels: 23
0.91 0.06 0.03
Matches are distributed among these distances:
196 7 0.01
197 360 0.53
198 30 0.04
199 118 0.17
200 59 0.09
201 109 0.16
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.31
Consensus pattern (197 bp):
AAGTGTCGATCCCAAAAACATCGAAACACATAATTATAATGTAATAGGTAACATAACAATGTAAC
CGGTCTAAATATACCGGTTATTAAAAAAAGGTATACATAATGTATCGATACTTTATACATTTGTG
TCGACACTTTATGTCCATAATAAATTTTCCAAACAAGTTCACGAAAAAGTGTCGATACATTTATA
AC
Found at i:11037404 original size:22 final size:21
Alignment explanation
Indices: 11037376--11037421 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
11037366 TAAAAAAAGG
*
11037376 TATACATAATGTATCGATACTT
1 TATACAT-ATGTATCGACACTT
* *
11037398 TATACATTTGTGTCGACACTT
1 TATACATATGTATCGACACTT
11037419 TAT
1 TAT
11037422 GTCCATAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.43
Consensus pattern (21 bp):
TATACATATGTATCGACACTT
Found at i:11041121 original size:190 final size:191
Alignment explanation
Indices: 11040766--11041247 Score: 493
Period size: 190 Copynumber: 2.5 Consensus size: 191
11040756 TATATTTGTG
** *
11040766 TCGATACATTTAAAACTAGTATCGATCCC-AAAATCAAAGAGACCGATAATTATAATGTAATAGG
1 TCGATACA-TT-AAA-TAGTATCGATCCCGAAAA-CATCGAAACCG--AATTATAATGT-ATAGG
* * * *
11040830 TAAATTTCCAATGTAACCGG-TAGAAATATACCGGGTTCATGAGAGAATAGGTCAACATAAAGTA
59 TAAATTTACAATGTAATCGGTTA-AAATATACC-GGTTAATGAGAGAATAGATCAACATAAAGTA
* * * *
11040894 TCGACACTTTTATAATTTGTGTCGATACATTTTTCCAAAATGAATG-GCAAACGAGGTGTACGCA
122 TCGACACTTTTATAATATGTGTCGATACATTTTTCCAAAAT-AAAGCACAAACGAGGTGCACGCA
11040958 TAAA-A
186 TAAAGA
* * *
11040963 T-GATACTTTTGTAAA-AGTATCGATCCTCG-AAACATCGAAATCGAATTATTATGTATAGGTAA
1 TCGATAC--AT-TAAATAGTATCGATCC-CGAAAACATCGAAACCGAATTATAATGTATAGGTAA
* * *
11041025 ATTTACAATGTAATCGGTTAAAATATACCGGTTAATTAGTA-AATAGATC-ACATTATGTATCGA
62 ATTTACAATGTAATCGGTTAAAATATACCGGTTAATGAG-AGAATAGATCAACATAAAGTATCGA
* *
11041088 CACTCTTTA-AATATGTGTCGATACTTTTTTCCAAAATAAAGCACAAACGAGTTGCACGCATAAA
126 CACT-TTTATAATATGTGTCGATACATTTTTCCAAAATAAAGCACAAACGAGGTGCACGCATAAA
*
11041152 GTG
190 G-A
* *
11041155 TCGATACATTAAATTGTATCGATCCCGAAAACATCGAAACCGATATTATAATG--TAGGTCAATT
1 TCGATACATTAAATAGTATCGATCCCGAAAACATCGAAACCGA-ATTATAATGTATAGGTAAATT
* * *
11041218 TATAATGTAATCGGTTTAAATTTACCGGTT
65 TACAATGTAATCGGTTAAAATATACCGGTT
11041248 TTATGAGAAA
Statistics
Matches: 242, Mismatches: 28, Indels: 37
0.79 0.09 0.12
Matches are distributed among these distances:
189 3 0.01
190 103 0.43
191 44 0.18
192 42 0.17
193 17 0.07
195 18 0.07
196 9 0.04
197 5 0.02
198 1 0.00
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (191 bp):
TCGATACATTAAATAGTATCGATCCCGAAAACATCGAAACCGAATTATAATGTATAGGTAAATTT
ACAATGTAATCGGTTAAAATATACCGGTTAATGAGAGAATAGATCAACATAAAGTATCGACACTT
TTATAATATGTGTCGATACATTTTTCCAAAATAAAGCACAAACGAGGTGCACGCATAAAGA
Found at i:11041659 original size:4 final size:4
Alignment explanation
Indices: 11041652--11041734 Score: 52
Period size: 4 Copynumber: 22.0 Consensus size: 4
11041642 AATTGTATAT
* * *
11041652 ATAC ATAC AT-C ATAC AT-C ATAC ATAT ATAC ATAC ATGC AT-- ATAT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
11041696 ATAC TTAT GTAC ATAC AT-C ATAC ATA- ATTAC ATAT ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-TAC ATAC ATAC
11041735 TTAATTACTT
Statistics
Matches: 61, Mismatches: 11, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
2 2 0.03
3 10 0.16
4 48 0.79
5 1 0.02
ACGTcount: A:0.45, C:0.19, G:0.02, T:0.34
Consensus pattern (4 bp):
ATAC
Found at i:11041677 original size:26 final size:25
Alignment explanation
Indices: 11041651--11041734 Score: 105
Period size: 26 Copynumber: 3.2 Consensus size: 25
11041641 AAATTGTATA
11041651 TATACATACATCATACATCATACATA
1 TATACATACATCATACAT-ATACATA
* *
11041677 TATACATACATGCATATATATACTTA
1 TATACATACAT-CATACATATACATA
*
11041703 TGTACATACATCATACATAATTACATA
1 TATACATACATCATACAT-A-TACATA
11041730 TATAC
1 TATAC
11041735 TTAATTACTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
25 6 0.12
26 28 0.57
27 15 0.31
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (25 bp):
TATACATACATCATACATATACATA
Found at i:11041739 original size:16 final size:16
Alignment explanation
Indices: 11041692--11041766 Score: 55
Period size: 16 Copynumber: 4.5 Consensus size: 16
11041682 ATACATGCAT
11041692 ATATATACTT-ATGTAC
1 ATATATACTTAAT-TAC
*
11041708 ATACATCATACATAATTAC
1 AT--AT-ATACTTAATTAC
11041727 ATATATACTTAATTAC
1 ATATATACTTAATTAC
* * *
11041743 TTCTATA-TATAATTAT
1 ATATATACT-TAATTAC
11041759 ATATATAC
1 ATATATAC
11041767 ACACATATAT
Statistics
Matches: 46, Mismatches: 7, Indels: 11
0.72 0.11 0.17
Matches are distributed among these distances:
15 1 0.02
16 29 0.63
17 2 0.04
18 2 0.04
19 10 0.22
20 2 0.04
ACGTcount: A:0.43, C:0.13, G:0.01, T:0.43
Consensus pattern (16 bp):
ATATATACTTAATTAC
Found at i:11041889 original size:2 final size:2
Alignment explanation
Indices: 11041882--11041953 Score: 126
Period size: 2 Copynumber: 36.0 Consensus size: 2
11041872 AAACTTTTAA
11041882 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
11041924 AT AT AT AT AT AT AT AT AT GT AT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11041954 GTGTGTGTAA
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 66 1.00
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (2 bp):
AT
Found at i:11045734 original size:3 final size:3
Alignment explanation
Indices: 11045726--11045750 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
11045716 ATATACCATT
11045726 ACA ACA ACA ACA ACA ACA ACA ACA A
1 ACA ACA ACA ACA ACA ACA ACA ACA A
11045751 AACCCAATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
ACA
Found at i:11046532 original size:8 final size:7
Alignment explanation
Indices: 11046492--11046534 Score: 50
Period size: 7 Copynumber: 5.9 Consensus size: 7
11046482 AACCTAATTT
11046492 TAAAAAA
1 TAAAAAA
11046499 TAAAATAA
1 TAAAA-AA
* *
11046507 CAAATAA
1 TAAAAAA
11046514 TAAAAAA
1 TAAAAAA
11046521 TAAAAAA
1 TAAAAAA
11046528 GTAAAAA
1 -TAAAAA
11046535 CATAGAATAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
7 19 0.63
8 11 0.37
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.16
Consensus pattern (7 bp):
TAAAAAA
Found at i:11046532 original size:15 final size:14
Alignment explanation
Indices: 11046492--11046534 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
11046482 AACCTAATTT
11046492 TAAAAAATAAAATAA
1 TAAAAAATAAAA-AA
* *
11046507 CAAATAATAAAAAA
1 TAAAAAATAAAAAA
11046521 TAAAAAAGTAAAAA
1 TAAAAAA-TAAAAA
11046535 CATAGAATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
14 7 0.30
15 16 0.70
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.16
Consensus pattern (14 bp):
TAAAAAATAAAAAA
Found at i:11046536 original size:28 final size:28
Alignment explanation
Indices: 11046492--11046552 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 28
11046482 AACCTAATTT
*
11046492 TAAAAAATAAAATAACAAATAATAAAAAA
1 TAAAAAATAAAATAACAAAGAAT-AAAAA
*
11046521 TAAAAAAGT-AAA-AACATAGAATAAAAA
1 TAAAAAA-TAAAATAACAAAGAATAAAAA
11046548 TAAAA
1 TAAAA
11046553 TACATAAGGT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 10 0.34
28 8 0.28
29 10 0.34
30 1 0.03
ACGTcount: A:0.77, C:0.03, G:0.03, T:0.16
Consensus pattern (28 bp):
TAAAAAATAAAATAACAAAGAATAAAAA
Found at i:11047873 original size:40 final size:40
Alignment explanation
Indices: 11047794--11047873 Score: 90
Period size: 40 Copynumber: 2.0 Consensus size: 40
11047784 ATAGGAGTCA
* * * * *
11047794 AATATTGCACCGTAGTGCTGAGGTCGAGCTTTGCTCACCT
1 AATAATGCACCGTAGGGCTGAGCTCGAGCTTTACCCACCT
*
11047834 AATAATGCACCGTAGGGCTGAGACTTG-GCTTTACCCACCT
1 AATAATGCACCGTAGGGCTGAG-CTCGAGCTTTACCCACCT
11047874 TGTACACTAT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
40 31 0.94
41 2 0.06
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
AATAATGCACCGTAGGGCTGAGCTCGAGCTTTACCCACCT
Found at i:11049218 original size:132 final size:132
Alignment explanation
Indices: 11048981--11049244 Score: 528
Period size: 132 Copynumber: 2.0 Consensus size: 132
11048971 AAATTAAATT
11048981 TATACTCAACTAGTTTCCTTAGCTTGCAAACTTCCCGTAGGATTTCACATTCCATCCTTAAGCTT
1 TATACTCAACTAGTTTCCTTAGCTTGCAAACTTCCCGTAGGATTTCACATTCCATCCTTAAGCTT
11049046 TTCCTTAGCTTTGATATTGCTTGATCTTGATTTCAAGCACTCAATCTAAATGGACATCATTTCCA
66 TTCCTTAGCTTTGATATTGCTTGATCTTGATTTCAAGCACTCAATCTAAATGGACATCATTTCCA
11049111 AA
131 AA
11049113 TATACTCAACTAGTTTCCTTAGCTTGCAAACTTCCCGTAGGATTTCACATTCCATCCTTAAGCTT
1 TATACTCAACTAGTTTCCTTAGCTTGCAAACTTCCCGTAGGATTTCACATTCCATCCTTAAGCTT
11049178 TTCCTTAGCTTTGATATTGCTTGATCTTGATTTCAAGCACTCAATCTAAATGGACATCATTTCCA
66 TTCCTTAGCTTTGATATTGCTTGATCTTGATTTCAAGCACTCAATCTAAATGGACATCATTTCCA
11049243 AA
131 AA
11049245 CATTCACAAA
Statistics
Matches: 132, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
132 132 1.00
ACGTcount: A:0.27, C:0.24, G:0.11, T:0.38
Consensus pattern (132 bp):
TATACTCAACTAGTTTCCTTAGCTTGCAAACTTCCCGTAGGATTTCACATTCCATCCTTAAGCTT
TTCCTTAGCTTTGATATTGCTTGATCTTGATTTCAAGCACTCAATCTAAATGGACATCATTTCCA
AA
Found at i:11049364 original size:34 final size:34
Alignment explanation
Indices: 11049321--11049388 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
11049311 TAATAAAATT
11049321 TTCTGATGATTATTCGATACAATTTCCATGTCAC
1 TTCTGATGATTATTCGATACAATTTCCATGTCAC
11049355 TTCTGATGATTATTCGATACAATTTCCATGTCAC
1 TTCTGATGATTATTCGATACAATTTCCATGTCAC
11049389 AACATAAATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.26, C:0.21, G:0.12, T:0.41
Consensus pattern (34 bp):
TTCTGATGATTATTCGATACAATTTCCATGTCAC
Found at i:11050403 original size:31 final size:31
Alignment explanation
Indices: 11050358--11050417 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
11050348 AATTACCATT
* *
11050358 AAACTAAGACACCTCAACTTTATCATCTTTC
1 AAACCAAGACACCTCAACCTTATCATCTTTC
*
11050389 AAACCAAGATACCTCAACCTTATCATCTT
1 AAACCAAGACACCTCAACCTTATCATCTT
11050418 CCTTAAGTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.37, C:0.30, G:0.03, T:0.30
Consensus pattern (31 bp):
AAACCAAGACACCTCAACCTTATCATCTTTC
Found at i:11050808 original size:31 final size:29
Alignment explanation
Indices: 11050773--11050831 Score: 75
Period size: 31 Copynumber: 2.0 Consensus size: 29
11050763 TAAATTAAAT
11050773 TTTAGTCC-CTAAACTTTCCTAAAATTTATAC
1 TTTAG-CCACTAAACTTT-C-AAAATTTATAC
*
11050804 TTTAGCCACTTAACTTTCAAAATTTATA
1 TTTAGCCACTAAACTTTCAAAATTTATA
11050832 ATTTGGTCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
29 10 0.38
30 3 0.12
31 13 0.50
ACGTcount: A:0.34, C:0.20, G:0.03, T:0.42
Consensus pattern (29 bp):
TTTAGCCACTAAACTTTCAAAATTTATAC
Found at i:11057970 original size:21 final size:20
Alignment explanation
Indices: 11057944--11058014 Score: 67
Period size: 20 Copynumber: 3.5 Consensus size: 20
11057934 AGATGAGCAT
11057944 TATCGATACTGAT-TGAAGTAG
1 TATCGATACTGATGTGAAG--G
*
11057965 TATCGATACTGATGTGGAGG
1 TATCGATACTGATGTGAAGG
*
11057985 TATCGATACCAAGA-GT-AAGG
1 TATCGATA-C-TGATGTGAAGG
11058005 TATCGATACT
1 TATCGATACT
11058015 ATAATTAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
19 1 0.02
20 20 0.47
21 16 0.37
22 6 0.14
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (20 bp):
TATCGATACTGATGTGAAGG
Found at i:11057989 original size:20 final size:20
Alignment explanation
Indices: 11057944--11057993 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 20
11057934 AGATGAGCAT
11057944 TATCGATACTGATTGAAGTAG
1 TATCGATACTGATTGAAG-AG
*
11057965 TATCGATACTGATGTGGAG-G
1 TATCGATACTGAT-TGAAGAG
11057985 TATCGATAC
1 TATCGATAC
11057994 CAAGAGTAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 10 0.37
21 13 0.48
22 4 0.15
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.32
Consensus pattern (20 bp):
TATCGATACTGATTGAAGAG
Found at i:11058639 original size:15 final size:15
Alignment explanation
Indices: 11058621--11058663 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
11058611 ATATAAATAT
*
11058621 GTTCTATGTGAAACC
1 GTTCTATGTGAAAAC
*
11058636 GTTCTATGTGAAAAT
1 GTTCTATGTGAAAAC
*
11058651 GTTTTATGTGAAA
1 GTTCTATGTGAAA
11058664 TGAAATACTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (15 bp):
GTTCTATGTGAAAAC
Found at i:11058881 original size:23 final size:24
Alignment explanation
Indices: 11058847--11058930 Score: 91
Period size: 23 Copynumber: 3.5 Consensus size: 24
11058837 GATCTTTCAA
11058847 GACAAATTTCTACGTGGTCCTTCGG
1 GACAAA-TTCTACGTGGTCCTTCGG
*
11058872 GA-AAATTCTACGTGGTCCTTTGG
1 GACAAATTCTACGTGGTCCTTCGG
* * * *
11058895 GATAATTTTCTACGTGGTCTTTCAG
1 GACAA-ATTCTACGTGGTCCTTCGG
11058920 GACAAA-TCTAC
1 GACAAATTCTAC
11058931 ACTGTAATTC
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
23 24 0.48
24 5 0.10
25 21 0.42
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (24 bp):
GACAAATTCTACGTGGTCCTTCGG
Found at i:11058911 original size:25 final size:23
Alignment explanation
Indices: 11058850--11058913 Score: 92
Period size: 23 Copynumber: 2.7 Consensus size: 23
11058840 CTTTCAAGAC
11058850 AAATTTCTACGTGGTCCTTCGGG
1 AAATTTCTACGTGGTCCTTCGGG
* *
11058873 AAAATTCTACGTGGTCCTTTGGG
1 AAATTTCTACGTGGTCCTTCGGG
11058896 ATAATTTTCTACGTGGTC
1 A-AA-TTTCTACGTGGTC
11058914 TTTCAGGACA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
23 22 0.61
24 2 0.06
25 12 0.33
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.38
Consensus pattern (23 bp):
AAATTTCTACGTGGTCCTTCGGG
Found at i:11065016 original size:27 final size:27
Alignment explanation
Indices: 11064952--11065008 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
11064942 TTCCTATAAT
*
11064952 CGAATTAACTGGTTAAGCCATCTAAAC
1 CGAATTAATTGGTTAAGCCATCTAAAC
11064979 CGAATTAATTGGTTAAGCCATCTAAAC
1 CGAATTAATTGGTTAAGCCATCTAAAC
11065006 CGA
1 CGA
11065009 GTATATTGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (27 bp):
CGAATTAATTGGTTAAGCCATCTAAAC
Found at i:11066928 original size:13 final size:13
Alignment explanation
Indices: 11066907--11066974 Score: 73
Period size: 13 Copynumber: 5.2 Consensus size: 13
11066897 AATGACGCAC
*
11066907 AATGAGCGTCATA
1 AATGCGCGTCATA
11066920 AATGCGCGTCATA
1 AATGCGCGTCATA
***
11066933 AATGTATGTCATA
1 AATGCGCGTCATA
* *
11066946 AATGTGTGTCATA
1 AATGCGCGTCATA
*
11066959 AATACGCGTCATA
1 AATGCGCGTCATA
11066972 AAT
1 AAT
11066975 TTCTGACGCA
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 47 1.00
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.29
Consensus pattern (13 bp):
AATGCGCGTCATA
Found at i:11067851 original size:64 final size:64
Alignment explanation
Indices: 11067724--11067882 Score: 198
Period size: 64 Copynumber: 2.5 Consensus size: 64
11067714 ATGCACACCC
* * * *
11067724 AACATCGAA-GCTATTTTGTGTACCGATGCACAACCATGCATCGATACACTCCTGGCTTTATTAA
1 AACATCGAATGC-ATTTTATGTACCGATACACAACCATGCATCGATACACTCCTAGCTTCATTAA
* * *
11067788 AACATCGAATGCATTTTATGTGCTGATACACATCCTATGCATCGATACACT-CTAGCTTCATTAA
1 AACATCGAATGCATTTTATGTACCGATACACAACC-ATGCATCGATACACTCCTAGCTTCATTAA
*
11067852 AACATCGAATGCA-ATTAGTGTACCGATACAC
1 AACATCGAATGCATTTTA-TGTACCGATACAC
11067883 CCCAAGTGTA
Statistics
Matches: 82, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
63 3 0.04
64 62 0.76
65 17 0.21
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (64 bp):
AACATCGAATGCATTTTATGTACCGATACACAACCATGCATCGATACACTCCTAGCTTCATTAA
Found at i:11067898 original size:64 final size:65
Alignment explanation
Indices: 11067724--11067902 Score: 170
Period size: 64 Copynumber: 2.8 Consensus size: 65
11067714 ATGCACACCC
* * * * * * *
11067724 AACATCGAA-GCTATTTTGTGTACCGATGCACAACC-ATGCATCGATACACTCCTGGCTTTATTA
1 AACATCGAATGC-ATATTATGTACCGATACACACCCAATGCACCGATACACTCCTAGCTTCATTA
11067787 A
65 A
* * * * * *
11067788 AACATCGAATGCATTTTATGTGCTGATACACATCCTATGCATCGATACACT-CTAGCTTCATTAA
1 AACATCGAATGCATATTATGTACCGATACACACCCAATGCACCGATACACTCCTAGCTTCATTAA
*
11067852 AACATCGAATGCA-ATTAGTGTACCGATACAC-CCCAAGTGTACCGATACACT
1 AACATCGAATGCATATTA-TGTACCGATACACACCCAA-TGCACCGATACACT
11067903 AAGTCATATA
Statistics
Matches: 97, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
63 6 0.06
64 74 0.76
65 17 0.18
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (65 bp):
AACATCGAATGCATATTATGTACCGATACACACCCAATGCACCGATACACTCCTAGCTTCATTAA
Found at i:11073685 original size:21 final size:20
Alignment explanation
Indices: 11073661--11073717 Score: 53
Period size: 22 Copynumber: 2.7 Consensus size: 20
11073651 ACGCTCTCTA
11073661 TGTATCGATACACTATG-ATAG
1 TGTATCGATACACT-TGAAT-G
* *
11073682 TGTACCGATGCATTCTTGAATG
1 TGTATCGATACA--CTTGAATG
11073704 TGTATCGATACACT
1 TGTATCGATACACT
11073718 CTGCAATGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
20 2 0.07
21 10 0.34
22 13 0.45
23 4 0.14
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (20 bp):
TGTATCGATACACTTGAATG
Found at i:11074246 original size:13 final size:13
Alignment explanation
Indices: 11074214--11074249 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
11074204 ATTATAATTG
*
11074214 TTCAAACATTGTT
1 TTCAAAAATTGTT
11074227 TTC-AAAATTGTT
1 TTCAAAAATTGTT
11074239 TTCAAAAATTG
1 TTCAAAAATTG
11074250 CCCATTAGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.36, C:0.11, G:0.08, T:0.44
Consensus pattern (13 bp):
TTCAAAAATTGTT
Found at i:11078558 original size:20 final size:20
Alignment explanation
Indices: 11078510--11078580 Score: 58
Period size: 20 Copynumber: 3.5 Consensus size: 20
11078500 AGATAAACAA
*
11078510 TATCGATACTGATTGAAGTA-G
1 TATCGATACTGA-TGTAG-AGG
*
11078531 TATTGATACTGATGTAGAGG
1 TATCGATACTGATGTAGAGG
*
11078551 TATCGATACCAAGA-GTA-AGG
1 TATCGATA-C-TGATGTAGAGG
11078571 TATCGATACT
1 TATCGATACT
11078581 ATAATTGAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
19 2 0.05
20 23 0.55
21 15 0.36
22 2 0.05
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.31
Consensus pattern (20 bp):
TATCGATACTGATGTAGAGG
Found at i:11079207 original size:15 final size:15
Alignment explanation
Indices: 11079183--11079225 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
11079173 ATATAAATAT
* *
11079183 GTTCTTTGTGAAACC
1 GTTCTATGTGAAAAC
*
11079198 GTTCTATGTGAAAAT
1 GTTCTATGTGAAAAC
*
11079213 GTTTTATGTGAAA
1 GTTCTATGTGAAA
11079226 TGAAATAGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.42
Consensus pattern (15 bp):
GTTCTATGTGAAAAC
Found at i:11079443 original size:23 final size:25
Alignment explanation
Indices: 11079397--11079445 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
11079387 ATTCTACACT
11079397 GTCATTCGGGACATATTTCTACGTG
1 GTCATTCGGGACATATTTCTACGTG
11079422 GTCATTCGGGACA-A-TTCTACGTG
1 GTCATTCGGGACATATTTCTACGTG
11079445 G
1 G
11079446 ACAAATTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 10 0.42
24 1 0.04
25 13 0.54
ACGTcount: A:0.20, C:0.20, G:0.27, T:0.33
Consensus pattern (25 bp):
GTCATTCGGGACATATTTCTACGTG
Found at i:11080329 original size:21 final size:19
Alignment explanation
Indices: 11080298--11080341 Score: 61
Period size: 21 Copynumber: 2.2 Consensus size: 19
11080288 GAAGAATTAC
11080298 GATGAATAGTATCGATACT
1 GATGAATAGTATCGATACT
*
11080317 GATGCAATAAGTATTGATACT
1 GATG-AAT-AGTATCGATACT
11080338 GATG
1 GATG
11080342 TGGGCATCGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.18
20 3 0.14
21 15 0.68
ACGTcount: A:0.36, C:0.09, G:0.23, T:0.32
Consensus pattern (19 bp):
GATGAATAGTATCGATACT
Found at i:11081408 original size:2 final size:2
Alignment explanation
Indices: 11081401--11081434 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
11081391 TTAATCTTTC
11081401 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
11081435 AATAAAATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:11082803 original size:3 final size:3
Alignment explanation
Indices: 11082795--11082868 Score: 62
Period size: 3 Copynumber: 24.0 Consensus size: 3
11082785 AATATTTGTT
* **
11082795 TAA TAA TAA TAA TAA TATA TAA TAA TAA TAA -ATT TAA TTT TAA TAA
1 TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TA-A TAA TAA TAA TAA
*
11082841 TAA TAA T-A TATA TTA TCAA TAA TAA TAA
1 TAA TAA TAA TA-A TAA T-AA TAA TAA TAA
11082869 AAGTAAAATT
Statistics
Matches: 57, Mismatches: 8, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
2 3 0.05
3 46 0.81
4 8 0.14
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (3 bp):
TAA
Found at i:11083306 original size:74 final size:75
Alignment explanation
Indices: 11083121--11083312 Score: 316
Period size: 74 Copynumber: 2.6 Consensus size: 75
11083111 TAAAATCTCA
11083121 TTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAATATCAAAAAGCTC
1 TTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAATATCAAAAAGCTC
*
11083186 CCTAAGGCTT
66 CCGAAGGCTT
* * *
11083196 TTTGAAAACATCGTGCACTGTAGGTCTTACAAATGACCCTAAGGCTTTG-AATATCAAAAAGCTC
1 TTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAATATCAAAAAGCTC
11083260 CCGAAGGCTT
66 CCGAAGGCTT
**
11083270 TTTGAAAACATCCTGCACTGTAGGTCTTATGGATGA-CCGAAGG
1 TTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGG
11083313 TTTTAAAAAC
Statistics
Matches: 108, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
73 6 0.06
74 56 0.52
75 46 0.43
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.27
Consensus pattern (75 bp):
TTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAATATCAAAAAGCTC
CCGAAGGCTT
Found at i:11083325 original size:44 final size:45
Alignment explanation
Indices: 11083259--11083371 Score: 147
Period size: 44 Copynumber: 2.5 Consensus size: 45
11083249 TCAAAAAGCT
* **
11083259 CCCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGA
1 CCCGAAGG--TTTTGAAAACATCATGCACTGTAGGTCTTACAGATGA
*
11083306 -CCGAAGGTTTTAAAAACATCATGCACTGTAGGTCTTACAGATGA
1 CCCGAAGGTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGA
* *
11083350 CCCGAAGGCTTTGAAAATATCA
1 CCCGAAGGTTTTGAAAACATCA
11083372 AAAAGCTCCG
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
44 33 0.57
45 18 0.31
46 7 0.12
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.27
Consensus pattern (45 bp):
CCCGAAGGTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGA
Found at i:11083441 original size:75 final size:73
Alignment explanation
Indices: 11083306--11083446 Score: 192
Period size: 75 Copynumber: 1.9 Consensus size: 73
11083296 TTATGGATGA
* *
11083306 CCGAAGGTTTTAAAAACATCATGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAATATC
1 CCGAAGGTTTTAAAAACATAATGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAACATC
11083371 AAAAAGCT
66 AAAAAGCT
* * ** * *
11083379 CCGAAGGCTTTTTGAAAACATAATGCACTGTAGGTTTTATGGATGAGCCGAAGGTTTTGAAAACA
1 CCGAAGG--TTTTAAAAACATAATGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAACA
11083444 TCA
64 TCA
11083447 TGCATTGTAT
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
73 7 0.12
75 51 0.88
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (73 bp):
CCGAAGGTTTTAAAAACATAATGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAACATC
AAAAAGCT
Found at i:11083450 original size:45 final size:45
Alignment explanation
Indices: 11083379--11083491 Score: 136
Period size: 45 Copynumber: 2.5 Consensus size: 45
11083369 TCAAAAAGCT
* * ** *
11083379 CCGAAGGCTTTTTGAAAACATAATGCACTGTAGGTTTTATGGATGAG
1 CCGAAGG--TTTTGAAAACATCATGCACTGTAGGTCTTACAGATGAC
* *
11083426 CCGAAGGTTTTGAAAACATCATGCATTGTATGTCTTACAGATGAC
1 CCGAAGGTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGAC
*
11083471 CCGAAGGCTTTGAAAACATCA
1 CCGAAGGTTTTGAAAACATCA
11083492 AAAAGCTTCC
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
45 51 0.88
47 7 0.12
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (45 bp):
CCGAAGGTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGAC
Found at i:11083559 original size:76 final size:74
Alignment explanation
Indices: 11083426--11083567 Score: 185
Period size: 76 Copynumber: 1.9 Consensus size: 74
11083416 TATGGATGAG
* *
11083426 CCGAAGGTTTTGAAAACATCATGCATTGTATGTCTTACAGATGACCCGAAGGCTTTGAAAACATC
1 CCGAAGGTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAACATC
11083491 AAAAAGCTT
66 AAAAAGCTT
* * ** ** *
11083500 CCGAAGGCTTTTTGAAAATATCCTGCACTGTAGGTCTTATTGATGACCTTAAGGTTTTGAAAACA
1 CCGAAGG--TTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAACA
11083565 TCA
64 TCA
11083568 TGCACTGTAG
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
74 7 0.12
76 50 0.88
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.30
Consensus pattern (74 bp):
CCGAAGGTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAACATC
AAAAAGCTT
Found at i:11083567 original size:121 final size:120
Alignment explanation
Indices: 11083195--11083688 Score: 814
Period size: 121 Copynumber: 4.1 Consensus size: 120
11083185 CCCTAAGGCT
* * *
11083195 TTTTGAAAACATCGTGCACTGTAGGTCTTACAAATGACCCTAAGGCTTTG--AATATCAAAAAGC
1 TTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAATATCAAAAAGC
11083258 TCCCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCGAAGG
66 TCCCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCGAAGG
*
11083313 TTTTAAAAACATCATGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAATATCAAAAAGC
1 TTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAATATCAAAAAGC
** *
11083378 T-CCGAAGGCTTTTTGAAAACATAATGCACTGTAGGTTTTATGGATGAGCCGAAGG
66 TCCCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGA-CCGAAGG
* * *
11083433 TTTTGAAAACATCATGCATTGTATGTCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGC
1 TTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAATATCAAAAAGC
* * * *
11083498 TTCCGAAGGCTTTTTGAAAATATCCTGCACTGTAGGTCTTATTGATGACCTTAAGG
66 TCCCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACC-GAAGG
11083554 TTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAATATCAAAAAGC
1 TTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAATATCAAAAAGC
11083619 TCCCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGG
66 TCCCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGA-CCGAAGG
11083675 TTTTGAAAACATCA
1 TTTTGAAAACATCA
11083689 AAAAACTCTC
Statistics
Matches: 346, Mismatches: 24, Indels: 9
0.91 0.06 0.02
Matches are distributed among these distances:
118 46 0.13
119 43 0.12
120 85 0.25
121 170 0.49
122 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (120 bp):
TTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAATATCAAAAAGC
TCCCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCGAAGG
Found at i:11083573 original size:45 final size:45
Alignment explanation
Indices: 11083500--11083612 Score: 145
Period size: 45 Copynumber: 2.5 Consensus size: 45
11083490 CAAAAAGCTT
* **
11083500 CCGAAGGCTTTTTGAAAATATCCTGCACTGTAGGTCTTATTGATGAC
1 CCGAAGG--TTTTGAAAATATCATGCACTGTAGGTCTTACAGATGAC
** *
11083547 CTTAAGGTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGAC
1 CCGAAGGTTTTGAAAATATCATGCACTGTAGGTCTTACAGATGAC
*
11083592 CCGAAGGCTTTGAAAATATCA
1 CCGAAGGTTTTGAAAATATCA
11083613 AAAAGCTCCC
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
45 51 0.91
47 5 0.09
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (45 bp):
CCGAAGGTTTTGAAAATATCATGCACTGTAGGTCTTACAGATGAC
Found at i:11083680 original size:76 final size:76
Alignment explanation
Indices: 11083554--11083745 Score: 312
Period size: 76 Copynumber: 2.5 Consensus size: 76
11083544 GACCTTAAGG
* ** * *
11083554 TTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAATATCAAAAAGC
1 TTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGCTTTGAAAACATCAAAAAAC
11083619 TCCCGAAGGCT
66 TCCCGAAGGCT
*
11083630 TTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAAAACATCAAAAAAC
1 TTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGCTTTGAAAACATCAAAAAAC
*
11083695 TCTCGAAGGCT
66 TCCCGAAGGCT
*
11083706 TTTTGAAAACATCCTGCACTGTAGGTATTATGGATGACCC
1 TTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCC
11083746 TGAGGTCTTA
Statistics
Matches: 108, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
76 108 1.00
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (76 bp):
TTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGCTTTGAAAACATCAAAAAAC
TCCCGAAGGCT
Found at i:11083682 original size:197 final size:192
Alignment explanation
Indices: 11083426--11083857 Score: 611
Period size: 197 Copynumber: 2.2 Consensus size: 192
11083416 TATGGATGAG
* * *
11083426 CCGAAGG--TTTTGAAAACATCATGCATTGTATGTCTTACAGATGACCCGAAGGCTTTGAAAACA
1 CCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAACA
* * * * *
11083489 TCAAAAAGCT-TCCGAAGGCTTTTTGAAAATATCCTGCACTGTAGGTCTTATTGATGACCTTAAG
66 TCAAAAAACTCT-CGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTATTATGGATGACCCTAAG
* *
11083553 GTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCC-GAAGGCTTTGAAAATATCAAAAA
130 GTCTT---AACATCATGCACTATAGGTCTTACAGATGACCCGGAA-GCTTT--AAATATCAAAAA
11083617 GCTC
189 GCTC
** *
11083621 CCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTATGGATGACCCGAAGGTTTTGAAAACA
1 CCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAACA
*
11083686 TCAAAAAACTCTCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTATTATGGATGACCCTGAGG
66 TCAAAAAACTCTCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTATTATGGATGACCCTAAGG
* *
11083751 TCTTATCATCTTGCACTATAGGTCTTACAGATGACCCGGAAGCTTTAAATATCAAAAAGCTC
131 TCTTAACATCATGCACTATAGGTCTTACAGATGACCCGGAAGCTTTAAATATCAAAAAGCTC
**
11083813 CCGAAGGCTTTTTGAAAACATCCTGCACTGTAAATCTTACAGATG
1 CCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTACAGATG
11083858 TGGGAAATAG
Statistics
Matches: 213, Mismatches: 20, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
192 57 0.27
194 35 0.16
195 10 0.05
197 110 0.52
198 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (192 bp):
CCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTCTTACAGATGACCCGAAGGCTTTGAAAACA
TCAAAAAACTCTCGAAGGCTTTTTGAAAACATCCTGCACTGTAGGTATTATGGATGACCCTAAGG
TCTTAACATCATGCACTATAGGTCTTACAGATGACCCGGAAGCTTTAAATATCAAAAAGCTC
Found at i:11084564 original size:22 final size:22
Alignment explanation
Indices: 11084502--11084564 Score: 99
Period size: 22 Copynumber: 2.9 Consensus size: 22
11084492 AAATCCAATA
* *
11084502 AATCTTTCATCTTTGAAAAGAG
1 AATCTATCATCTTTGAAGAGAG
*
11084524 AATCTATCATCTTTAAAGAGAG
1 AATCTATCATCTTTGAAGAGAG
11084546 AATCTATCATCTTTGAAGA
1 AATCTATCATCTTTGAAGA
11084565 ATGTAGATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.35
Consensus pattern (22 bp):
AATCTATCATCTTTGAAGAGAG
Found at i:11085018 original size:53 final size:52
Alignment explanation
Indices: 11084930--11085077 Score: 156
Period size: 52 Copynumber: 2.8 Consensus size: 52
11084920 AACTGGTTCG
* * * * *
11084930 TAAAACATTTGACAACACATTCA-TCATCTCATGTGG-TTTTTCTTAGATGCTCA
1 TAAAACATTTGACAACACATTCATTC-TTTCCTGTGGCTTCTGC-CAGATG-TCA
**
11084983 TAAAACATTTGACAACACATTCATTCTTTCCTGTGGCTTCTGCCAGATGTTG
1 TAAAACATTTGACAACACATTCATTCTTTCCTGTGGCTTCTGCCAGATGTCA
** * *
11085035 TAATGCATTTGACAATACATTCATCCTTTCCTGTGGCTTCTGC
1 TAAAACATTTGACAACACATTCATTCTTTCCTGTGGCTTCTGC
11085078 TAAGATTTCT
Statistics
Matches: 82, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
52 40 0.49
53 36 0.44
54 6 0.07
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.38
Consensus pattern (52 bp):
TAAAACATTTGACAACACATTCATTCTTTCCTGTGGCTTCTGCCAGATGTCA
Found at i:11087862 original size:121 final size:121
Alignment explanation
Indices: 11087647--11087890 Score: 375
Period size: 121 Copynumber: 2.0 Consensus size: 121
11087637 GACATTAGCC
* * *
11087647 TTTATTAGACTAATTAAAGGGTTCAACTCATCACAATGTCTTTGATTTGACAATCACAGTGGAGC
1 TTTATTAGACTAATTAAAGGGTTCAACTCATCACAATCTCTTTAACTTGACAATCACAGTGGAGC
* * * *
11087712 AAACACCGAACTGCCAAATACCCGATCAAGGTTATGCTTTGAATATATGATTTCTTT
66 AAACACCGAACTGCCAAATACCCAATCAAGGTCAAGCTTTGAATATATGACTT-TTT
*
11087769 TTTATTGGACTAATTAAAGGGTTCAACTCATCACAATCTC-TTAACTTGACAATCACAGTGGAGC
1 TTTATTAGACTAATTAAAGGGTTCAACTCATCACAATCTCTTTAACTTGACAATCACAGTGGAGC
*
11087833 AAAC-CTTGAACTGCCAAATACCCAATCAAGGTCAAGCTTTGAATATATGACTTTTT
66 AAACAC-CGAACTGCCAAATACCCAATCAAGGTCAAGCTTTGAATATATGACTTTTT
11087889 TT
1 TT
11087891 AGGAGAACTT
Statistics
Matches: 112, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
120 6 0.05
121 68 0.61
122 38 0.34
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (121 bp):
TTTATTAGACTAATTAAAGGGTTCAACTCATCACAATCTCTTTAACTTGACAATCACAGTGGAGC
AAACACCGAACTGCCAAATACCCAATCAAGGTCAAGCTTTGAATATATGACTTTTT
Found at i:11094683 original size:3 final size:3
Alignment explanation
Indices: 11094675--11094748 Score: 69
Period size: 3 Copynumber: 24.0 Consensus size: 3
11094665 AATATTTGTT
* **
11094675 TAA TAA TAA TAA TAA TATA TAA TAA TAA TAA -ATT TAA TTT TAA TAA
1 TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TA-A TAA TAA TAA TAA
* *
11094721 TAA TAA TATA TAT TAT TAA TAA TAA TAA
1 TAA TAA TA-A TAA TAA TAA TAA TAA TAA
11094749 AAGTAAAATT
Statistics
Matches: 59, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
2 1 0.02
3 51 0.86
4 7 0.12
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (3 bp):
TAA
Found at i:11094838 original size:46 final size:46
Alignment explanation
Indices: 11094775--11094999 Score: 261
Period size: 46 Copynumber: 4.9 Consensus size: 46
11094765 AGTGTCTACA
* * *
11094775 GATGCCACAAATGAAAATGCATAAAAGTGCATTATTGACATGAAAG
1 GATGCCACAAATGAAAATACATAACAGTGCATTATCGACATGAAAG
** * * * *
11094821 GATGCCGTAAATAAAAATGCATAACGGTGCATTATCGGCATGAAAG
1 GATGCCACAAATGAAAATACATAACAGTGCATTATCGACATGAAAG
**
11094867 GATGCCACAAATGAAAATACATAATGGTGCATTATCGACATGAAAG
1 GATGCCACAAATGAAAATACATAACAGTGCATTATCGACATGAAAG
* * ** * *
11094913 GATGCGATAAATGAAAATACATGTCAGTTCATAATCGACATGAAAG
1 GATGCCACAAATGAAAATACATAACAGTGCATTATCGACATGAAAG
* * * *
11094959 GATGCCACAAATAAAAATACATAACGGTGTATTAACGACAT
1 GATGCCACAAATGAAAATACATAACAGTGCATTATCGACAT
11095000 AAAATGTGCC
Statistics
Matches: 148, Mismatches: 31, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
46 148 1.00
ACGTcount: A:0.44, C:0.15, G:0.20, T:0.22
Consensus pattern (46 bp):
GATGCCACAAATGAAAATACATAACAGTGCATTATCGACATGAAAG
Found at i:11094897 original size:92 final size:92
Alignment explanation
Indices: 11094775--11094999 Score: 290
Period size: 92 Copynumber: 2.4 Consensus size: 92
11094765 AGTGTCTACA
* * *
11094775 GATGCCACAAATGAAAATGCATAAAAGTGCATTATTGACATGAAAGGATGCCG-TAAATAAAAAT
1 GATGCCACAAATGAAAATACATAAAGGTGCATTATCGACATGAAAGGATG-CGATAAATAAAAAT
* * * *
11094839 GCATAACGGTGCATTATCGGCATGAAAG
65 ACATAACAGTGCATAATCGACATGAAAG
* *
11094867 GATGCCACAAATGAAAATACATAATGGTGCATTATCGACATGAAAGGATGCGATAAATGAAAATA
1 GATGCCACAAATGAAAATACATAAAGGTGCATTATCGACATGAAAGGATGCGATAAATAAAAATA
** *
11094932 CATGTCAGTTCATAATCGACATGAAAG
66 CATAACAGTGCATAATCGACATGAAAG
* * * *
11094959 GATGCCACAAATAAAAATACATAACGGTGTATTAACGACAT
1 GATGCCACAAATGAAAATACATAAAGGTGCATTATCGACAT
11095000 AAAATGTGCC
Statistics
Matches: 116, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
91 2 0.02
92 114 0.98
ACGTcount: A:0.44, C:0.15, G:0.20, T:0.22
Consensus pattern (92 bp):
GATGCCACAAATGAAAATACATAAAGGTGCATTATCGACATGAAAGGATGCGATAAATAAAAATA
CATAACAGTGCATAATCGACATGAAAG
Found at i:11095733 original size:19 final size:18
Alignment explanation
Indices: 11095697--11095735 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
11095687 TACGATGGGC
*
11095697 TAAATAAACTAATGGATA
1 TAAATAAACAAATGGATA
*
11095715 TAAATTAAACAAATTGATA
1 TAAA-TAAACAAATGGATA
11095734 TA
1 TA
11095736 GAATGAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.56, C:0.05, G:0.08, T:0.31
Consensus pattern (18 bp):
TAAATAAACAAATGGATA
Found at i:11105346 original size:2 final size:2
Alignment explanation
Indices: 11105339--11105371 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
11105329 TAAACAAGAG
11105339 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
11105372 AAAATGAACT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:11110452 original size:2 final size:2
Alignment explanation
Indices: 11110445--11110482 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
11110435 TAATTTAACC
11110445 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
11110483 ACAGTGACTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:11111508 original size:13 final size:13
Alignment explanation
Indices: 11111492--11111526 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
11111482 ATTCATTATA
11111492 ATATAATAATAAT
1 ATATAATAATAAT
*
11111505 ATATGATAATAAT
1 ATATAATAATAAT
11111518 ATTATAATA
1 A-TATAATA
11111527 CTTATAACGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (13 bp):
ATATAATAATAAT
Found at i:11117695 original size:2 final size:2
Alignment explanation
Indices: 11117688--11117717 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
11117678 ATTTACCTAA
*
11117688 AT AT AT AT CT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11117718 GATAAGGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11123741 original size:2 final size:2
Alignment explanation
Indices: 11123734--11123764 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
11123724 TCAATCTACA
*
11123734 AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
11123765 ATTTACGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:11123914 original size:13 final size:13
Alignment explanation
Indices: 11123893--11123939 Score: 76
Period size: 13 Copynumber: 3.6 Consensus size: 13
11123883 AATGACACGC
11123893 AATGCGCGTCATA
1 AATGCGCGTCATA
*
11123906 AATGAGCGTCATA
1 AATGCGCGTCATA
*
11123919 AATGCGTGTCATA
1 AATGCGCGTCATA
11123932 AATGCGCG
1 AATGCGCG
11123940 CGTCATAGAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (13 bp):
AATGCGCGTCATA
Found at i:11125967 original size:20 final size:19
Alignment explanation
Indices: 11125925--11125974 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 19
11125915 TGGGCTAGAA
11125925 GTATCGATATTGTAGGTGAG
1 GTATCGATATTGTAGGT-AG
11125945 GTATCGATATTCGTAGG-ATG
1 GTATCGATATT-GTAGGTA-G
*
11125965 GTATCAATAT
1 GTATCGATAT
11125975 CGAGTTCACT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 1 0.04
20 21 0.78
21 5 0.19
ACGTcount: A:0.28, C:0.08, G:0.28, T:0.36
Consensus pattern (19 bp):
GTATCGATATTGTAGGTAG
Found at i:11127359 original size:73 final size:72
Alignment explanation
Indices: 11127277--11127424 Score: 271
Period size: 73 Copynumber: 2.0 Consensus size: 72
11127267 AATATAAAAA
11127277 AATGAAACTAATATTATAAATAAATATGAATTTACACACAATT-ATATGGAAAAGAAACATAAAT
1 AATGAAACTAATATTATAAATAAATATGAATTTACACACAATTAATATGGAAAAGAAAC--AAAT
11127341 ACGGGTATC
64 ACGGGTATC
11127350 AATGAAACTAATATTATAAATAAATATGAATTTACACACAATTAATATGGAAAAGAAACAAATAC
1 AATGAAACTAATATTATAAATAAATATGAATTTACACACAATTAATATGGAAAAGAAACAAATAC
11127415 GGGTATC
66 GGGTATC
11127422 AAT
1 AAT
11127425 ATACCAATAT
Statistics
Matches: 74, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
72 16 0.22
73 43 0.58
74 15 0.20
ACGTcount: A:0.53, C:0.09, G:0.11, T:0.27
Consensus pattern (72 bp):
AATGAAACTAATATTATAAATAAATATGAATTTACACACAATTAATATGGAAAAGAAACAAATAC
GGGTATC
Found at i:11130098 original size:19 final size:20
Alignment explanation
Indices: 11130063--11130115 Score: 74
Period size: 19 Copynumber: 2.7 Consensus size: 20
11130053 AAAAATAAAA
11130063 AAAGAATAAAAATATATATAT
1 AAAGAATAAAAATATAT-TAT
11130084 AAA-AATAAAAA-ATATTAT
1 AAAGAATAAAAATATATTAT
*
11130102 AAAGAATAATAATA
1 AAAGAATAAAAATA
11130116 ATAAACAGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 6 0.21
19 11 0.38
20 9 0.31
21 3 0.10
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.26
Consensus pattern (20 bp):
AAAGAATAAAAATATATTAT
Found at i:11130112 original size:22 final size:21
Alignment explanation
Indices: 11130061--11130113 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 21
11130051 ATAAAAATAA
11130061 AAAAAGAAT-AAAAATATATAT
1 AAAAA-AATAAAAAATATATAT
*
11130082 ATAAAAATAAAAAATAT-TAT
1 AAAAAAATAAAAAATATATAT
11130102 AAAGAATAATAA
1 AAA-AA-AATAA
11130114 TAATAAACAG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 8 0.30
21 14 0.52
22 5 0.19
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.25
Consensus pattern (21 bp):
AAAAAAATAAAAAATATATAT
Found at i:11130849 original size:26 final size:26
Alignment explanation
Indices: 11130809--11130871 Score: 99
Period size: 26 Copynumber: 2.4 Consensus size: 26
11130799 CGAGAAAGGT
11130809 GAAATTTTTACCTTTTATTTCATTTTC
1 GAAA-TTTTACCTTTTATTTCATTTTC
* *
11130836 GAAATTTTATCTTTTATTTCATTTTT
1 GAAATTTTACCTTTTATTTCATTTTC
11130862 GAAATTTTAC
1 GAAATTTTAC
11130872 AATATGCTTC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 29 0.88
27 4 0.12
ACGTcount: A:0.25, C:0.11, G:0.05, T:0.59
Consensus pattern (26 bp):
GAAATTTTACCTTTTATTTCATTTTC
Found at i:11133064 original size:6 final size:6
Alignment explanation
Indices: 11133047--11133104 Score: 68
Period size: 6 Copynumber: 9.8 Consensus size: 6
11133037 CCCACCCTTA
*
11133047 TTTTTC TTTTT- TTCTTT- TTTTTC CTTTTC TTTTTC TTTTT- TCTTTTC
1 TTTTTC TTTTTC TT-TTTC TTTTTC TTTTTC TTTTTC TTTTTC T-TTTTC
11133094 TTTTTC TTTTT
1 TTTTTC TTTTT
11133105 TCAAATTTAG
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
5 6 0.13
6 39 0.85
7 1 0.02
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTC
Found at i:11133073 original size:18 final size:18
Alignment explanation
Indices: 11133047--11133105 Score: 59
Period size: 19 Copynumber: 3.2 Consensus size: 18
11133037 CCCACCCTTA
11133047 TTTTT-CTTTTTTTCTTT
1 TTTTTCCTTTTTTTCTTT
11133064 TTTTTCCTTTTCTTT-TTCT
1 TTTTTCCTTTT-TTTCTT-T
*
11133083 TTTTTCTTTTCTTTTTCTTT
1 TTTTTC-CTT-TTTTTCTTT
11133103 TTT
1 TTT
11133106 CAAATTTAGG
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
17 5 0.14
18 7 0.20
19 10 0.29
20 9 0.26
21 4 0.11
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (18 bp):
TTTTTCCTTTTTTTCTTT
Found at i:11133079 original size:29 final size:29
Alignment explanation
Indices: 11133047--11133103 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
11133037 CCCACCCTTA
11133047 TTTTTCTTTTTTTCTTTT-TTTTCCTTTTC
1 TTTTTC-TTTTTTCTTTTCTTTTCCTTTTC
*
11133076 TTTTTCTTTTTTCTTTTCTTTTTCTTTT
1 TTTTTCTTTTTTCTTTTCTTTTCCTTTT
11133104 TTCAAATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 11 0.42
29 15 0.58
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (29 bp):
TTTTTCTTTTTTCTTTTCTTTTCCTTTTC
Found at i:11133106 original size:18 final size:18
Alignment explanation
Indices: 11133047--11133106 Score: 88
Period size: 18 Copynumber: 3.3 Consensus size: 18
11133037 CCCACCCTTA
11133047 TTTTTCTTTT-TTTCTT-T
1 TTTTTCTTTTCTTT-TTCT
11133064 TTTTTCCTTTTCTTTTTCT
1 TTTTT-CTTTTCTTTTTCT
11133083 TTTTTCTTTTCTTTTTCT
1 TTTTTCTTTTCTTTTTCT
11133101 TTTTTC
1 TTTTTC
11133107 AAATTTAGGG
Statistics
Matches: 40, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.12
18 26 0.65
19 9 0.22
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (18 bp):
TTTTTCTTTTCTTTTTCT
Found at i:11143668 original size:11 final size:10
Alignment explanation
Indices: 11143648--11143718 Score: 74
Period size: 11 Copynumber: 6.9 Consensus size: 10
11143638 GAAGGGAAAT
11143648 AATAATAAAA
1 AATAATAAAA
11143658 AATATATAAAA
1 AATA-ATAAAA
*
11143669 AATAACAAAAA
1 AATAA-TAAAA
11143680 AATAATAAAA
1 AATAATAAAA
*
11143690 AATGAAT-AAG
1 AAT-AATAAAA
11143700 AATAA-AAAA
1 AATAATAAAA
11143709 AATATATAAA
1 AATA-ATAAA
11143719 TAAAAATGTT
Statistics
Matches: 51, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
9 8 0.16
10 18 0.35
11 25 0.49
ACGTcount: A:0.76, C:0.01, G:0.03, T:0.20
Consensus pattern (10 bp):
AATAATAAAA
Found at i:11143672 original size:21 final size:21
Alignment explanation
Indices: 11143648--11143718 Score: 69
Period size: 21 Copynumber: 3.4 Consensus size: 21
11143638 GAAGGGAAAT
11143648 AATAATAAAAAATATATAAAA
1 AATAATAAAAAATATATAAAA
*
11143669 AATAACAAAAAA-ATAATAAAA
1 AATAATAAAAAATAT-ATAAAA
*
11143690 AATGAAT-AAGAATA-A-AAAA
1 AAT-AATAAAAAATATATAAAA
11143709 AATATATAAA
1 AATA-ATAAA
11143719 TAAAAATGTT
Statistics
Matches: 42, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
18 1 0.02
19 9 0.21
20 5 0.12
21 24 0.57
22 3 0.07
ACGTcount: A:0.76, C:0.01, G:0.03, T:0.20
Consensus pattern (21 bp):
AATAATAAAAAATATATAAAA
Found at i:11143780 original size:2 final size:2
Alignment explanation
Indices: 11143775--11143800 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
11143765 AAAAACAAAC
11143775 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
11143801 TTTTATATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11144424 original size:77 final size:76
Alignment explanation
Indices: 11144275--11144426 Score: 279
Period size: 77 Copynumber: 2.0 Consensus size: 76
11144265 TTTGTATCAT
11144275 TGTTTCAAAAATCTCATTGGTTTTCAAATAAGCCTCAGGGAGGGCTAGATGTGAGGAGAAAGTTC
1 TGTTTCAAAAATCTCATTGGTTTTCAAATAAGCCTCAGGGAGGGCTAGATGTGAGGAGAAAGTTC
11144340 TCGAAAAGCCA
66 TCGAAAAGCCA
11144351 TGTTTCAAAAATCTCATTGGTTTTCAAAAATAAGCCTCAGGGAGGG-TAGATGTGAGGAGAAAGT
1 TGTTTCAAAAATCTCATTGGTTTTC--AAATAAGCCTCAGGGAGGGCTAGATGTGAGGAGAAAGT
11144415 TCTCGAAAAGCC
64 TCTCGAAAAGCC
11144427 CTCCCTCGGT
Statistics
Matches: 74, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
76 25 0.34
77 30 0.41
78 19 0.26
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (76 bp):
TGTTTCAAAAATCTCATTGGTTTTCAAATAAGCCTCAGGGAGGGCTAGATGTGAGGAGAAAGTTC
TCGAAAAGCCA
Found at i:11150041 original size:74 final size:74
Alignment explanation
Indices: 11149862--11150235 Score: 382
Period size: 74 Copynumber: 5.1 Consensus size: 74
11149852 TGAAGCGGAG
* * * *
11149862 GATG-TTACCTGACC-ATATGATGCTTTCAAATCATTTTTTAAAGAACCCAAGTTTGATTTTTCC
1 GATGATTACCCGACCAATAAGATGTTTTCAAATCATTTTTTAAAGAACCCAAGTTTGA-TTTTCA
*
11149925 AAGGTTTTTT
65 AAGGTTTCTT
* * *** * *
11149935 GATGACTACTCGATTGATACA-ATGTTTCCAAATCATTTTTTAAAGAAGCCAAGTTTGATTTTCA
1 GATGATTACCCGACCAATA-AGATGTTTTCAAATCATTTTTTAAAGAACCCAAGTTTGATTTTCA
**
11149999 AATGG-TTCAC
65 AA-GGTTTCTT
* * *
11150009 GATGATTACCCGACCAATAAGATGTTTTCAAATTATTTTTTAAAGAAACCAAGTTTGATTTTTAA
1 GATGATTACCCGACCAATAAGATGTTTTCAAATCATTTTTTAAAGAACCCAAGTTTGATTTTCAA
11150074 AGGTTTCTT
66 AGGTTTCTT
*** * * ** ** *
11150083 GATGATTATAGGACCGATACGATGTTTTC-AAT-AAATTTTAAAGAAGACAAATTTGATTTTCAA
1 GATGATTACCCGACCAATAAGATGTTTTCAAATCATTTTTTAAAGAACCCAAGTTTGATTTTCAA
11150146 AGGTTTCTT
66 AGGTTTCTT
** * * * *
11150155 GATGATTACCTAACCAATATGATGTTTTCAAATGAATTTTTAAAGAACCCAAGTTTAATTTTCAA
1 GATGATTACCCGACCAATAAGATGTTTTCAAATCATTTTTTAAAGAACCCAAGTTTGATTTTCAA
11150220 AGGTTTCTT
66 AGGTTTCTT
11150229 GATGATT
1 GATGATT
11150236 TTAAAGAAAC
Statistics
Matches: 247, Mismatches: 46, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
72 57 0.23
73 13 0.05
74 138 0.56
75 39 0.16
ACGTcount: A:0.33, C:0.13, G:0.14, T:0.39
Consensus pattern (74 bp):
GATGATTACCCGACCAATAAGATGTTTTCAAATCATTTTTTAAAGAACCCAAGTTTGATTTTCAA
AGGTTTCTT
Found at i:11150172 original size:146 final size:148
Alignment explanation
Indices: 11149862--11150235 Score: 463
Period size: 146 Copynumber: 2.5 Consensus size: 148
11149852 TGAAGCGGAG
* *
11149862 GATG-TTACCTGACC-ATATGATGCTTTCAAATCATTTTTTAAAGAACCCAAGTTTGATTTTTCC
1 GATGATTACCTGACCAATATGATGTTTTCAAATCATTTTTTAAAGAACCCAAGTTTGATTTTT-A
* * ** ** * *
11149925 AAGGTTTTTTGATGACTACTCGATTGATACAATGTTTCCAAATCATTTTTTAAAGAAGCCAAGTT
65 AAGGTTTCTTGATGATTACTCGACCGATACAATGTTTCCAAATCAAATTTTAAAGAAGACAAATT
11149990 TGATTTTCAAATGGTTCAC
130 TGATTTTCAAATGGTTCAC
* * * *
11150009 GATGATTACCCGACCAATAAGATGTTTTCAAATTATTTTTTAAAGAAACCAAGTTTGATTTTTAA
1 GATGATTACCTGACCAATATGATGTTTTCAAATCATTTTTTAAAGAACCCAAGTTTGATTTTTAA
* * *
11150074 AGGTTTCTTGATGATTA-TAGGACCGATACGATGTTTTC-AAT-AAATTTTAAAGAAGACAAATT
66 AGGTTTCTTGATGATTACT-CGACCGATACAATGTTTCCAAATCAAATTTTAAAGAAGACAAATT
**
11150136 TGATTTTCAAA-GGTTTCTT
130 TGATTTTCAAATGG-TTCAC
* * * * *
11150155 GATGATTACCTAACCAATATGATGTTTTCAAATGAATTTTTAAAGAACCCAAGTTTAATTTTCAA
1 GATGATTACCTGACCAATATGATGTTTTCAAATCATTTTTTAAAGAACCCAAGTTTGATTTTTAA
11150220 AGGTTTCTTGATGATT
66 AGGTTTCTTGATGATT
11150236 TTAAAGAAAC
Statistics
Matches: 196, Mismatches: 27, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
145 2 0.01
146 104 0.53
147 8 0.04
148 39 0.20
149 43 0.22
ACGTcount: A:0.33, C:0.13, G:0.14, T:0.39
Consensus pattern (148 bp):
GATGATTACCTGACCAATATGATGTTTTCAAATCATTTTTTAAAGAACCCAAGTTTGATTTTTAA
AGGTTTCTTGATGATTACTCGACCGATACAATGTTTCCAAATCAAATTTTAAAGAAGACAAATTT
GATTTTCAAATGGTTCAC
Found at i:11150275 original size:41 final size:42
Alignment explanation
Indices: 11150192--11150276 Score: 145
Period size: 42 Copynumber: 2.0 Consensus size: 42
11150182 TCAAATGAAT
*
11150192 TTTTAAAGAACCCAAGTTTAATTTTCAAAGGTTTCTTGATGA
1 TTTTAAAGAAACCAAGTTTAATTTTCAAAGGTTTCTTGATGA
*
11150234 TTTTAAAGAAACCAAGTTTGATTTT-AAAGGTTTCTTGATGA
1 TTTTAAAGAAACCAAGTTTAATTTTCAAAGGTTTCTTGATGA
11150275 TT
1 TT
11150277 ATAGGACCGA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
41 18 0.44
42 23 0.56
ACGTcount: A:0.33, C:0.09, G:0.15, T:0.42
Consensus pattern (42 bp):
TTTTAAAGAAACCAAGTTTAATTTTCAAAGGTTTCTTGATGA
Found at i:11150333 original size:116 final size:115
Alignment explanation
Indices: 11150117--11150351 Score: 341
Period size: 116 Copynumber: 2.0 Consensus size: 115
11150107 TTTTCAATAA
*
11150117 ATTTTAAAGAAGACAAATTTGATTTTCAAAGGTTTCTTGATGATTACCTAACCAATATGATGTTT
1 ATTTTAAAGAAGACAAATTTGATTTTCAAAGGTTTCTTGATGATTA-CTAACCAATACGATGTTT
* *
11150182 TCAAATGAATTTTTAAAGAACCCAAGTTTAATTTTCAAAGGTTTCTTGATG
65 TCAAATAAATTTTTAAAGAACACAAGTTTAATTTTCAAAGGTTTCTTGATG
* *
11150233 ATTTTAAAGAA-ACCAAGTTTGATTTT-AAAGGTTTCTTGATGATTA-TAGGACCGATACGATGT
1 ATTTTAAAGAAGA-CAAATTTGATTTTCAAAGGTTTCTTGATGATTACTA--ACCAATACGATGT
* *
11150295 TTTCAAATAAATTTTTGAAAGAAGACAAGTTTGATTTTCAAAGGTTTCTTGATG
63 TTTCAAATAAATTTTT-AAAGAACACAAGTTTAATTTTCAAAGGTTTCTTGATG
11150349 ATT
1 ATT
11150352 ACCTAACCAA
Statistics
Matches: 108, Mismatches: 7, Indels: 8
0.88 0.06 0.07
Matches are distributed among these distances:
113 2 0.02
115 46 0.43
116 60 0.56
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.40
Consensus pattern (115 bp):
ATTTTAAAGAAGACAAATTTGATTTTCAAAGGTTTCTTGATGATTACTAACCAATACGATGTTTT
CAAATAAATTTTTAAAGAACACAAGTTTAATTTTCAAAGGTTTCTTGATG
Found at i:11150352 original size:75 final size:71
Alignment explanation
Indices: 11150234--11150492 Score: 245
Period size: 75 Copynumber: 3.6 Consensus size: 71
11150224 TTCTTGATGA
*
11150234 TTTTAAAGAA-ACCAAGTTTGATTTT-AAAGGTTTCTTGATGATTATAGGACCGATACGATGTTT
1 TTTTAAAGAAGA-CAAGTTTGATTTTCAAAGGTTTCTTGATGATTATA-GACCGATA-AATG-TT
11150297 TCAAATAAAT
62 TCAAATAAAT
* *
11150307 TTTTGAAAGAAGACAAGTTTGATTTTCAAAGGTTTCTTGATGATTACCTA-ACC-A-ATATG-AT
1 TTTT-AAAGAAGACAAGTTTGATTTTCAAAGGTTTCTTGATGATTA--TAGACCGATAAATGTTT
*
11150368 CAAAT-GAT
63 CAAATAAAT
** * *
11150376 TTTTAAAGAACCCAAG-TT-AATTTC-AAGGTTTCTTGATGATTACCT-GATCGATATAATGCTT
1 TTTTAAAGAAGACAAGTTTGATTTTCAAAGGTTTCTTGATGATTA--TAGACCGATA-AATG-TT
11150437 TCAAATAAAT
62 TCAAATAAAT
11150447 TTTTGAAA-AAGACAAGTTTGATTTTCAAAGGTTTTCTTGATGATTA
1 TTTT-AAAGAAGACAAGTTTGATTTTCAAAGG-TTTCTTGATGATTA
11150493 AATCATTCGG
Statistics
Matches: 156, Mismatches: 13, Indels: 32
0.78 0.06 0.16
Matches are distributed among these distances:
65 23 0.15
66 6 0.04
67 3 0.02
68 13 0.08
69 6 0.04
70 12 0.08
71 12 0.08
72 8 0.05
73 10 0.06
74 24 0.15
75 37 0.24
77 2 0.01
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.39
Consensus pattern (71 bp):
TTTTAAAGAAGACAAGTTTGATTTTCAAAGGTTTCTTGATGATTATAGACCGATAAATGTTTCAA
ATAAAT
Found at i:11150367 original size:190 final size:179
Alignment explanation
Indices: 11150046--11150416 Score: 618
Period size: 190 Copynumber: 2.0 Consensus size: 179
11150036 TCAAATTATT
11150046 TTTTAAAGAAACCAAGTTTGATTTTTAAAGGTTTCTTGATGATTATAGGACCGATACGATGTTTT
1 TTTTAAAGAAACCAAGTTTGATTTTTAAAGGTTTCTTGATGATTATAGGACCGATACGATGTTTT
11150111 CAATAAATTTTAAAGAAGACAAATTTGATTTTCAAAGGTTTCTTGATGATTACCTAACCAATATG
66 CAATAAATTTTAAAGAAGACAAATTTGATTTTCAAAGGTTTCTTGATGATTACCTAACCAATATG
11150176 ATGTTTTCAAATGAATTTTTAAAGAACCCAAGTTTAATTTTCAAAGGTTTCTTGATGA
131 A-----TCAAATG-ATTTTTAAAGAACCCAAG-TTAA-TTTC-AAGGTTTCTTGATGA
11150234 TTTTAAAGAAACCAAGTTTGA-TTTTAAAGGTTTCTTGATGATTATAGGACCGATACGATGTTTT
1 TTTTAAAGAAACCAAGTTTGATTTTTAAAGGTTTCTTGATGATTATAGGACCGATACGATGTTTT
*
11150298 CAAATAAATTTTTGAAAGAAGACAAGTTTGATTTTCAAAGGTTTCTTGATGATTACCTAACCAAT
66 C-AATAAA-TTTT-AAAGAAGACAAATTTGATTTTCAAAGGTTTCTTGATGATTACCTAACCAAT
11150363 ATGATCAAATGATTTTTAAAGAACCCAAGTTAATTTCAAGGTTTCTTGATGA
128 ATGATCAAATGATTTTTAAAGAACCCAAGTTAATTTCAAGGTTTCTTGATGA
11150415 TT
1 TT
11150417 ACCTGATCGA
Statistics
Matches: 179, Mismatches: 1, Indels: 13
0.93 0.01 0.07
Matches are distributed among these distances:
181 17 0.09
182 4 0.02
183 4 0.02
184 18 0.10
185 7 0.04
187 44 0.25
188 27 0.15
189 4 0.02
190 54 0.30
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.39
Consensus pattern (179 bp):
TTTTAAAGAAACCAAGTTTGATTTTTAAAGGTTTCTTGATGATTATAGGACCGATACGATGTTTT
CAATAAATTTTAAAGAAGACAAATTTGATTTTCAAAGGTTTCTTGATGATTACCTAACCAATATG
ATCAAATGATTTTTAAAGAACCCAAGTTAATTTCAAGGTTTCTTGATGA
Found at i:11150488 original size:140 final size:141
Alignment explanation
Indices: 11150230--11150492 Score: 397
Period size: 140 Copynumber: 1.9 Consensus size: 141
11150220 AGGTTTCTTG
* * * *
11150230 ATGATTTTAAAGAAACCAAGTTTGATTTTAAAGGTTTCTTGATGATTATAGGACCGATACGATGT
1 ATGATTTTAAAGAAACCAAGTTTGAATTTAAAGGTTTCTTGATGATTACAGGACCGATACAATGC
11150295 TTTCAAATAAATTTTTGAAAGAAGACAAGTTTGATTTTCAAAGGTTTCTTGATGATTACCTAACC
66 TTTCAAATAAATTTTTGAAAGAAGACAAGTTTGATTTTCAAAGGTTTCTTGATGATTACCTAACC
11150360 AATATGATCAA
131 AATATGATCAA
* * ** * *
11150371 ATGATTTTTAAAGAACCCAAG-TT-AATTTCAAGGTTTCTTGATGATTACCTGATCGATATAATG
1 ATGA-TTTTAAAGAAACCAAGTTTGAATTTAAAGGTTTCTTGATGATTACAGGACCGATACAATG
11150434 CTTTCAAATAAATTTTTGAAA-AAGACAAGTTTGATTTTCAAAGGTTTTCTTGATGATTA
65 CTTTCAAATAAATTTTTGAAAGAAGACAAGTTTGATTTTCAAAGG-TTTCTTGATGATTA
11150493 AATCATTCGG
Statistics
Matches: 110, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
139 23 0.21
140 66 0.60
141 6 0.05
142 15 0.14
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.38
Consensus pattern (141 bp):
ATGATTTTAAAGAAACCAAGTTTGAATTTAAAGGTTTCTTGATGATTACAGGACCGATACAATGC
TTTCAAATAAATTTTTGAAAGAAGACAAGTTTGATTTTCAAAGGTTTCTTGATGATTACCTAACC
AATATGATCAA
Found at i:11150541 original size:42 final size:42
Alignment explanation
Indices: 11150482--11150562 Score: 135
Period size: 42 Copynumber: 1.9 Consensus size: 42
11150472 CAAAGGTTTT
* *
11150482 CTTGATGATTAAATCATTCGGGTCATCAGTAAGTCTTTCAAG
1 CTTGATAATTAAATCATTCGGGCCATCAGTAAGTCTTTCAAG
*
11150524 CTTGATAATTAAATCATTCGGGCCATCTGTAAGTCTTTC
1 CTTGATAATTAAATCATTCGGGCCATCAGTAAGTCTTTC
11150563 GAGCAGGGCG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (42 bp):
CTTGATAATTAAATCATTCGGGCCATCAGTAAGTCTTTCAAG
Found at i:11155978 original size:14 final size:14
Alignment explanation
Indices: 11155955--11155987 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
11155945 TATTTTAACA
11155955 TTTAAAATTTT-AT
1 TTTAAAATTTTCAT
11155968 TTTAGAAATTTTCAT
1 TTTA-AAATTTTCAT
11155983 TTTAA
1 TTTAA
11155988 TCCTCAATCC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 4 0.22
14 8 0.44
15 6 0.33
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (14 bp):
TTTAAAATTTTCAT
Found at i:11156168 original size:9 final size:9
Alignment explanation
Indices: 11156154--11156182 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
11156144 TCATTTAATA
11156154 TTTTATGAT
1 TTTTATGAT
11156163 TTTTATGAT
1 TTTTATGAT
11156172 TTTTATGAT
1 TTTTATGAT
11156181 TT
1 TT
11156183 ATATCCTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.10, T:0.69
Consensus pattern (9 bp):
TTTTATGAT
Found at i:11156289 original size:19 final size:18
Alignment explanation
Indices: 11156254--11156292 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
11156244 TGTCTTTTTA
*
11156254 GTTTTCTTTCTTTTTCTT
1 GTTTTCTTTCTTATTCTT
*
11156272 GTTTTTTTTCATTATTCTT
1 GTTTTCTTTC-TTATTCTT
11156291 GT
1 GT
11156293 AACTTTATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.05, C:0.13, G:0.08, T:0.74
Consensus pattern (18 bp):
GTTTTCTTTCTTATTCTT
Found at i:11161317 original size:23 final size:22
Alignment explanation
Indices: 11161291--11161333 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
11161281 TATAAAAAAT
11161291 TATTTTTTATTAAATATTTTTGG
1 TATTTTTTATTAAAT-TTTTTGG
*
11161314 TATTTTTTATTTAATTTTTT
1 TATTTTTTATTAAATTTTTT
11161334 AAATAATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (22 bp):
TATTTTTTATTAAATTTTTTGG
Found at i:11164211 original size:45 final size:46
Alignment explanation
Indices: 11164162--11164249 Score: 151
Period size: 45 Copynumber: 1.9 Consensus size: 46
11164152 GAACATCAAA
* *
11164162 TGCATTTTATGCATCGATGCAC-ATACCATGCATCGATGCACTTAG
1 TGCATTTGATGCATCGATGCACAAGACCATGCATCGATGCACTTAG
11164207 TGCATTTGATGCATCGATGCACAAGACCATGCATCGATGCACT
1 TGCATTTGATGCATCGATGCACAAGACCATGCATCGATGCACT
11164250 AAGGTTATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
45 21 0.52
46 19 0.47
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.28
Consensus pattern (46 bp):
TGCATTTGATGCATCGATGCACAAGACCATGCATCGATGCACTTAG
Found at i:11167394 original size:21 final size:21
Alignment explanation
Indices: 11167368--11167409 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
11167358 AACTGTTGAG
11167368 AGTTGACGGCCATTGTAGAAA
1 AGTTGACGGCCATTGTAGAAA
* *
11167389 AGTTGATGGTCATTGTAGAAA
1 AGTTGACGGCCATTGTAGAAA
11167410 TTAAATTTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.29
Consensus pattern (21 bp):
AGTTGACGGCCATTGTAGAAA
Found at i:11168930 original size:22 final size:23
Alignment explanation
Indices: 11168889--11168931 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
11168879 CAACGAGCTC
*
11168889 TTTTTGAAATGAAAGTGTTGAGA
1 TTTTTGAAAAGAAAGTGTTGAGA
*
11168912 TTTTTTAAAAGAAAG-GTTGA
1 TTTTTGAAAAGAAAGTGTTGA
11168932 TTGTTAATCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.37, C:0.00, G:0.23, T:0.40
Consensus pattern (23 bp):
TTTTTGAAAAGAAAGTGTTGAGA
Found at i:11173741 original size:25 final size:25
Alignment explanation
Indices: 11173709--11173757 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
11173699 GTATTTTGGG
*
11173709 TCATTTTAC-ACTTCAGGGGTATTTT
1 TCATTTTACGA-TTCAAGGGTATTTT
11173734 TCATTTTACGATTCAAGGGTATTT
1 TCATTTTACGATTCAAGGGTATTT
11173758 CAGTCATTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.22, C:0.14, G:0.16, T:0.47
Consensus pattern (25 bp):
TCATTTTACGATTCAAGGGTATTTT
Found at i:11175444 original size:29 final size:30
Alignment explanation
Indices: 11175396--11175452 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
11175386 GGGCGAGTCC
11175396 CTAAACTTTCCAGAACTTCAAAAATTGTAT
1 CTAAACTTTCCAGAACTTCAAAAATTGTAT
* * *
11175426 CTAAAC-TTCCATAATTTCATAAATTGT
1 CTAAACTTTCCAGAACTTCAAAAATTGT
11175453 CCCAAAATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 18 0.75
30 6 0.25
ACGTcount: A:0.39, C:0.19, G:0.05, T:0.37
Consensus pattern (30 bp):
CTAAACTTTCCAGAACTTCAAAAATTGTAT
Found at i:11178474 original size:17 final size:17
Alignment explanation
Indices: 11178437--11178491 Score: 65
Period size: 17 Copynumber: 3.2 Consensus size: 17
11178427 TTCATGCATT
* **
11178437 TAGTTCATTAATAGAGT
1 TAGTTCATTAATAAAAC
11178454 TAGTTCATTAATAAAAC
1 TAGTTCATTAATAAAAC
* *
11178471 TAGTTCATTCATTAAAC
1 TAGTTCATTAATAAAAC
11178488 TAGT
1 TAGT
11178492 ACATCAATTA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 33 1.00
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.40
Consensus pattern (17 bp):
TAGTTCATTAATAAAAC
Found at i:11179640 original size:53 final size:53
Alignment explanation
Indices: 11179578--11179685 Score: 144
Period size: 53 Copynumber: 2.0 Consensus size: 53
11179568 TTCAATTTCC
* ** * *
11179578 TTCTTACAACAATTGCAAGGGCCATTTTAGAGTTCTGGCAAAGCACTTTTGGT
1 TTCTTACAACAATTGCAAGAGAAATTTCAGAGTTCTGGCAAAGCACTTTCGGT
* * *
11179631 TTCTTACAACAATTGCCATAGAAATTTCAGAGTTCTGGCAAAGCGCTTTCGGT
1 TTCTTACAACAATTGCAAGAGAAATTTCAGAGTTCTGGCAAAGCACTTTCGGT
11179684 TT
1 TT
11179686 TTCACCTGAA
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
53 47 1.00
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.34
Consensus pattern (53 bp):
TTCTTACAACAATTGCAAGAGAAATTTCAGAGTTCTGGCAAAGCACTTTCGGT
Found at i:11179932 original size:30 final size:30
Alignment explanation
Indices: 11179862--11179928 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
11179852 AGGTTGACCC
* * * *
11179862 GATTTGAAATAGATTTTTTCAGGTTATTCT
1 GATTGGAAATAGACTTTTTCAGGTAACTCT
11179892 GATTGGAAATAGACTTTTT-AGGTAACTCT
1 GATTGGAAATAGACTTTTTCAGGTAACTCT
11179921 G-TTGGAAA
1 GATTGGAAA
11179929 AATATATTGG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 7 0.21
29 9 0.27
30 17 0.52
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (30 bp):
GATTGGAAATAGACTTTTTCAGGTAACTCT
Found at i:11180603 original size:59 final size:62
Alignment explanation
Indices: 11180540--11180658 Score: 190
Period size: 59 Copynumber: 2.0 Consensus size: 62
11180530 TATATATGAA
*
11180540 GATTAGATGTTAGTATCATGAAGCGAAAATGTGAG-ACATATATTTTTAA-T-ATATGTTAG
1 GATTAGATGTTAGTATCATGAAGAGAAAATGTGAGTACATATATTTTTAATTCATATGTTAG
* *
11180599 GATTAGATGTTAGTATCATGAAGAGAAAATGTTAGTATATATATTTTTAATTCATATGTT
1 GATTAGATGTTAGTATCATGAAGAGAAAATGTGAGTACATATATTTTTAATTCATATGTT
11180659 CTTTAAAATT
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
59 33 0.61
60 13 0.24
61 1 0.02
62 7 0.13
ACGTcount: A:0.37, C:0.04, G:0.18, T:0.40
Consensus pattern (62 bp):
GATTAGATGTTAGTATCATGAAGAGAAAATGTGAGTACATATATTTTTAATTCATATGTTAG
Found at i:11182678 original size:20 final size:20
Alignment explanation
Indices: 11182649--11182706 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
11182639 TTTCAATTCG
*
11182649 GGTCAGCCTTTAGATTTTCA
1 GGTCAACCTTTAGATTTTCA
* *
11182669 GGTCAACCTTTAGACTTTCG
1 GGTCAACCTTTAGATTTTCA
* *
11182689 GGTCGATCTTTAGATTTT
1 GGTCAACCTTTAGATTTT
11182707 TAGGCCAATC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.41
Consensus pattern (20 bp):
GGTCAACCTTTAGATTTTCA
Found at i:11183187 original size:16 final size:16
Alignment explanation
Indices: 11183166--11183204 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
11183156 TAAACTAAAA
*
11183166 TTGGGTTGCTTTAGGT
1 TTGGGTTACTTTAGGT
*
11183182 TTGGGTTACTTTCGGT
1 TTGGGTTACTTTAGGT
*
11183198 TCGGGTT
1 TTGGGTT
11183205 TTTCCATTTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.05, C:0.10, G:0.36, T:0.49
Consensus pattern (16 bp):
TTGGGTTACTTTAGGT
Found at i:11183251 original size:16 final size:16
Alignment explanation
Indices: 11183232--11183263 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
11183222 TTTCAGTTTG
*
11183232 GGTTGTTTTCGGTTCA
1 GGTTGCTTTCGGTTCA
11183248 GGTTGCTTTCGGTTCA
1 GGTTGCTTTCGGTTCA
11183264 TGTTAATTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.06, C:0.16, G:0.31, T:0.47
Consensus pattern (16 bp):
GGTTGCTTTCGGTTCA
Found at i:11185246 original size:3 final size:3
Alignment explanation
Indices: 11185238--11185299 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
11185228 TTATATTTGT
11185238 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
11185286 TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TT
11185300 GAAACCACAA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:11188663 original size:23 final size:23
Alignment explanation
Indices: 11188582--11188665 Score: 107
Period size: 23 Copynumber: 3.7 Consensus size: 23
11188572 ACATTTTATA
**
11188582 TGGCACTACGGTGCAATTCTACG
1 TGGCACTTTGGTGCAATTCTACG
* *
11188605 TGGCACTTTGGTACAATTCTATG
1 TGGCACTTTGGTGCAATTCTACG
*
11188628 TGGTACTTTGGTGCAATTCTACG
1 TGGCACTTTGGTGCAATTCTACG
11188651 TGGCA-TTTCGGTGCA
1 TGGCACTTT-GGTGCA
11188666 TTTATACGAG
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
22 3 0.06
23 49 0.94
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.35
Consensus pattern (23 bp):
TGGCACTTTGGTGCAATTCTACG
Found at i:11191130 original size:106 final size:105
Alignment explanation
Indices: 11190938--11191148 Score: 413
Period size: 106 Copynumber: 2.0 Consensus size: 105
11190928 CAGAAGTGAA
11190938 TGTGAGCGTGAAAGAGTTAGTCATTTAGTAAATATAATATCGATGTTTTCGGCAAAGAAGTTTTT
1 TGTGAGCGTGAAAGAGTTAGTCATTTAGTAAATATAATATCGATGTTTTCGGCAAAGAAGTTTTT
11191003 GTTACTATGGTGTCAAAGTTTTCTTGCAAATGTGGTAGAT
66 GTTACTATGGTGTCAAAGTTTTCTTGCAAATGTGGTAGAT
11191043 TGTGAGCGGTGAAAGAGTTAGTCATTTAGTAAATATAATATCGATGTTTTCGGCAAAGAAGTTTT
1 TGTGAGC-GTGAAAGAGTTAGTCATTTAGTAAATATAATATCGATGTTTTCGGCAAAGAAGTTTT
11191108 TGTTACTATGGTGTCAAAGTTTTCTTGCAAATGTGGTAGAT
65 TGTTACTATGGTGTCAAAGTTTTCTTGCAAATGTGGTAGAT
11191149 GCAAGAGCTA
Statistics
Matches: 105, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
105 7 0.07
106 98 0.93
ACGTcount: A:0.29, C:0.09, G:0.24, T:0.38
Consensus pattern (105 bp):
TGTGAGCGTGAAAGAGTTAGTCATTTAGTAAATATAATATCGATGTTTTCGGCAAAGAAGTTTTT
GTTACTATGGTGTCAAAGTTTTCTTGCAAATGTGGTAGAT
Found at i:11195644 original size:23 final size:22
Alignment explanation
Indices: 11195590--11195651 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 22
11195580 GACATTTTAT
*
11195590 ATGGCACTACGGTGCAATTCTA
1 ATGGCACTTCGGTGCAATTCTA
* * *
11195612 AGCGGTACTTCGATGCAATTCTA
1 A-TGGCACTTCGGTGCAATTCTA
11195635 CATGGCACTTCGGTGCA
1 -ATGGCACTTCGGTGCA
11195652 TTTATACGAG
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
22 1 0.03
23 29 0.94
24 1 0.03
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.27
Consensus pattern (22 bp):
ATGGCACTTCGGTGCAATTCTA
Found at i:11196392 original size:23 final size:22
Alignment explanation
Indices: 11196338--11196399 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 22
11196328 GACATTTTAT
*
11196338 ATGGCACTACGGTGCAATTCTA
1 ATGGCACTTCGGTGCAATTCTA
* * *
11196360 AGCGGTACTTCGATGCAATTCTA
1 A-TGGCACTTCGGTGCAATTCTA
11196383 CATGGCACTTCGGTGCA
1 -ATGGCACTTCGGTGCA
11196400 TTTATACGAG
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
22 1 0.03
23 29 0.94
24 1 0.03
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.27
Consensus pattern (22 bp):
ATGGCACTTCGGTGCAATTCTA
Found at i:11197574 original size:20 final size:20
Alignment explanation
Indices: 11197549--11197586 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
11197539 TGGGTTCAAT
*
11197549 TATCGATACTAGTTGAACAA
1 TATCGATACTAGATGAACAA
11197569 TATCGATACTAGATGAAC
1 TATCGATACTAGATGAAC
11197587 TGGGACAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (20 bp):
TATCGATACTAGATGAACAA
Found at i:11203395 original size:18 final size:18
Alignment explanation
Indices: 11203374--11203430 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
11203364 AAATTATTTG
11203374 TATATAACTTTTATTAAA
1 TATATAACTTTTATTAAA
**
11203392 TATAT-A--TAAATTAAA
1 TATATAACTTTTATTAAA
*
11203407 AATATAACTTTTATTAAA
1 TATATAACTTTTATTAAA
11203425 TATATA
1 TATATA
11203431 TAAATTTTAA
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
15 11 0.37
16 1 0.03
17 1 0.03
18 17 0.57
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.46
Consensus pattern (18 bp):
TATATAACTTTTATTAAA
Found at i:11205202 original size:31 final size:31
Alignment explanation
Indices: 11205166--11205224 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
11205156 AACTTAAAAG
* *
11205166 AGTTTTGCAATAATGAGATTTAAATAATTTT
1 AGTTTTACAATAATGAAATTTAAATAATTTT
*
11205197 AGTTTTACAATACTGAAATTTAAATAAT
1 AGTTTTACAATAATGAAATTTAAATAAT
11205225 CCATACAACT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.42, C:0.05, G:0.10, T:0.42
Consensus pattern (31 bp):
AGTTTTACAATAATGAAATTTAAATAATTTT
Found at i:11205275 original size:22 final size:22
Alignment explanation
Indices: 11205249--11205291 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
11205239 TAATAAATTA
11205249 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
11205271 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
11205292 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:11205300 original size:22 final size:22
Alignment explanation
Indices: 11205251--11205299 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
11205241 ATAAATTATT
**
11205251 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
11205273 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
11205296 TAAA
1 TAAA
11205300 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:11205309 original size:32 final size:32
Alignment explanation
Indices: 11205271--11205513 Score: 234
Period size: 32 Copynumber: 8.4 Consensus size: 32
11205261 CAATCCATAT
11205271 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
11205303 TTT-AAA-AAATC-ATCGATAC-----AATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
11205327 --CAATAATAAATCAATCCATA-T--T---TTA
1 TTTAA-AATAAATCAATCCATACTAATAAATTA
11205352 ---AAA-TAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
11205380 TTTAAAATAAATCAATCCATAC-AACTACA--A
1 TTTAAAATAAATCAATCCATACTAA-TAAATTA
*
11205410 --T--AATAAATCAATCTATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
11205438 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
11205470 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
11205502 TTTAAAATAAAT
1 TTTAAAATAAAT
11205514 TATTTTAAAA
Statistics
Matches: 178, Mismatches: 9, Indels: 48
0.76 0.04 0.20
Matches are distributed among these distances:
22 14 0.08
23 3 0.02
24 9 0.05
25 9 0.05
26 25 0.14
27 2 0.01
28 5 0.03
29 7 0.04
30 7 0.04
31 8 0.04
32 89 0.50
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.34
Consensus pattern (32 bp):
TTTAAAATAAATCAATCCATACTAATAAATTA
Found at i:11205335 original size:77 final size:78
Alignment explanation
Indices: 11205254--11205491 Score: 316
Period size: 90 Copynumber: 2.9 Consensus size: 78
11205244 AATTATTTAA
*
11205254 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAAAATC-ATCG
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAAAATCAATCC
*
11205318 ATACAATTACAAT
66 ATACAACTACAAT
11205331 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTT-AAA-AAATCAAT
11205396 CCATACAACTACAAT
64 CCATACAACTACAAT
*
11205411 AATAAATCAATCTATACTAATAAATTATTTAAAATAAATCAATTCATACTAATAAATTATTTAAA
1 AATAAATCAATC----C--AT--A-T-TTTAAAATAAATCAATCCATACTAATAAATTATTT-AA
11205476 ATAAATCAATCCATAC
55 A-AAATCAATCCATAC
11205492 TAATAAATTA
Statistics
Matches: 145, Mismatches: 3, Indels: 13
0.90 0.02 0.08
Matches are distributed among these distances:
77 52 0.36
78 3 0.02
79 5 0.03
80 27 0.19
84 1 0.01
86 2 0.01
88 1 0.01
89 1 0.01
90 53 0.37
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.33
Consensus pattern (78 bp):
AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAAAATCAATCC
ATACAACTACAAT
Found at i:11205377 original size:22 final size:22
Alignment explanation
Indices: 11205331--11205376 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
11205321 CAATTACAAT
**
11205331 AATAAATCAATCCATATTTTAA
1 AATAAATCAATCCATATAATAA
11205353 AATAAATCAATCCATACTAATAA
1 AATAAATCAATCCATA-TAATAA
11205376 A
1 A
11205377 TTATTTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.30
Consensus pattern (22 bp):
AATAAATCAATCCATATAATAA
Found at i:11205417 original size:58 final size:61
Alignment explanation
Indices: 11205352--11205513 Score: 233
Period size: 58 Copynumber: 2.7 Consensus size: 61
11205342 CCATATTTTA
*
11205352 AAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAC-AACTACA-A-T
1 AAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACTAA-TAAATATT
* *
11205411 -AATAAATCAATCTATACTAATAAATTATTTAAAATAAATCAATTCATACTAATAAATTATTT
1 AAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACTAATAAA-TA-TT
11205473 AAAATAAATCAATCCATACTAATAAATTATTTAAAATAAAT
1 -AAATAAATCAATCCATACTAATAAATTATTTAAAATAAAT
11205514 TATTTTAAAA
Statistics
Matches: 92, Mismatches: 4, Indels: 9
0.88 0.04 0.09
Matches are distributed among these distances:
58 50 0.54
59 2 0.02
60 1 0.01
62 1 0.01
64 38 0.41
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.33
Consensus pattern (61 bp):
AAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACTAATAAATATT
Found at i:11205433 original size:18 final size:17
Alignment explanation
Indices: 11205410--11205499 Score: 66
Period size: 18 Copynumber: 5.5 Consensus size: 17
11205400 ACAACTACAA
11205410 TAATAAATCAATCTATAC
1 TAATAAATCAAT-TATAC
*
11205428 TAATAAAT-TATT-TA-
1 TAATAAATCAATTATAC
*
11205442 AAATAAATCAATTCATAC
1 TAATAAATCAATT-ATAC
*
11205460 TAATAAAT-TATT-TA-
1 TAATAAATCAATTATAC
* *
11205474 AAATAAATCAATCCATAC
1 TAATAAATCAAT-TATAC
11205492 TAATAAAT
1 TAATAAAT
11205500 TATTTAAAAT
Statistics
Matches: 55, Mismatches: 9, Indels: 16
0.69 0.11 0.20
Matches are distributed among these distances:
14 14 0.25
15 9 0.16
16 1 0.02
17 9 0.16
18 22 0.40
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.36
Consensus pattern (17 bp):
TAATAAATCAATTATAC
Found at i:11205448 original size:14 final size:14
Alignment explanation
Indices: 11205429--11205543 Score: 95
Period size: 15 Copynumber: 7.5 Consensus size: 14
11205419 AATCTATACT
11205429 AATAAATTATTTAA
1 AATAAATTATTTAA
* *
11205443 AATAAATCAATTCATACT
1 AATAAAT-TATT--TA-A
11205461 AATAAATTATTTAA
1 AATAAATTATTTAA
* * *
11205475 AATAAATCAATCCATACT
1 AATAAAT-TAT--TTA-A
11205493 AATAAATTATTTAA
1 AATAAATTATTTAA
11205507 AATAAATTATTTTAA
1 AATAAATTA-TTTAA
11205522 AATAAATTATTTTAA
1 AATAAATTA-TTTAA
11205537 AATAAAT
1 AATAAAT
11205544 AACCTTATTA
Statistics
Matches: 82, Mismatches: 10, Indels: 17
0.75 0.09 0.16
Matches are distributed among these distances:
14 23 0.28
15 36 0.44
17 9 0.11
18 14 0.17
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (14 bp):
AATAAATTATTTAA
Found at i:11205616 original size:10 final size:10
Alignment explanation
Indices: 11205601--11205637 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
11205591 ATAATTATTC
11205601 TTGAAGATGT
1 TTGAAGATGT
11205611 TTGAAGATGT
1 TTGAAGATGT
**
11205621 TTGAAGACAT
1 TTGAAGATGT
11205631 TTGAAGA
1 TTGAAGA
11205638 CATATAACCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.35, C:0.03, G:0.27, T:0.35
Consensus pattern (10 bp):
TTGAAGATGT
Found at i:11206892 original size:2 final size:2
Alignment explanation
Indices: 11206887--11206919 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
11206877 AATATAAAAA
*
11206887 AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
11206920 AAATAATTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:11208263 original size:23 final size:23
Alignment explanation
Indices: 11208237--11208293 Score: 87
Period size: 23 Copynumber: 2.5 Consensus size: 23
11208227 TTAATTTTTA
* *
11208237 AAATCATATTATTTATTTATTTG
1 AAATAATATTAATTATTTATTTG
*
11208260 AAATAATGTTAATTATTTATTTG
1 AAATAATATTAATTATTTATTTG
11208283 AAATAATATTA
1 AAATAATATTA
11208294 CTTTTAAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (23 bp):
AAATAATATTAATTATTTATTTG
Found at i:11208521 original size:23 final size:24
Alignment explanation
Indices: 11208450--11208522 Score: 66
Period size: 22 Copynumber: 3.2 Consensus size: 24
11208440 AATTAAATTA
*
11208450 ATATTTTTATAATA-T-TATAAAT
1 ATATTTTTATAAAATTATATAAAT
* **
11208472 ATATTTTT-TATAATTAT-TTCAT
1 ATATTTTTATAAAATTATATAAAT
*
11208494 GTATTTTTATAAAATTATATAAAT
1 ATATTTTTATAAAATTATATAAAT
11208518 -TATTT
1 ATATTT
11208523 AATTATTTTT
Statistics
Matches: 39, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
21 3 0.08
22 19 0.49
23 14 0.36
24 3 0.08
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.58
Consensus pattern (24 bp):
ATATTTTTATAAAATTATATAAAT
Done.