genome.fa.s8748.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008748.1 Hibiscus syriacus cultivar Beakdansim tig00111838_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  286141

Tables:   1   

This is table  1  of  1  ( 103 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6006--6190	36	5.1	36	92	1	273	34	23	24	18	1.96
6298--6349	11	4.7	11	81	9	70	19	1	19	59	1.47
12020--12054	18	1.9	18	88	0	52	34	8	48	8	1.64
12821--12897	31	2.4	32	89	4	120	18	6	20	54	1.65
12934--12991	27	2.2	26	87	3	80	17	3	20	58	1.53
13871--14476	83	7.3	83	79	2	563	32	18	15	33	1.92
14562--14607	24	2.0	23	82	4	56	39	23	4	32	1.75
17704--17752	19	2.5	20	93	6	91	53	32	0	14	1.41
31221--31263	18	2.3	18	80	4	50	48	2	2	46	1.27
48119--48164	23	2.0	23	86	0	65	26	21	28	23	1.99
57488--57543	14	4.0	14	73	17	53	23	25	19	32	1.98
64364--64403	2	20.0	2	100	0	80	50	0	0	50	1.00
64578--64621	23	1.9	23	95	0	79	29	25	22	22	1.99
70387--70419	2	16.5	2	93	0	57	0	0	45	54	0.99
76846--76920	39	1.9	39	88	0	114	24	41	16	18	1.90
80647--80687	15	2.9	14	80	20	57	21	12	7	58	1.58
82722--82881	85	1.8	84	82	9	203	32	18	15	33	1.92
86839--86995	55	2.9	54	76	1	161	35	15	22	26	1.94
87350--87407	22	2.6	22	94	0	98	31	17	15	36	1.91
88068--88385	73	4.4	73	86	5	439	26	21	21	30	1.98
89087--89163	39	2.0	39	89	0	118	22	42	16	18	1.89
90880--91213	165	2.0	165	95	4	602	26	16	26	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99745--99825	35	2.4	34	81	10	101	25	11	2	60	1.43
99967--99995	5	5.8	5	100	0	58	17	0	0	82	0.66
102208--102521	158	2.0	156	97	2	594	34	10	19	34	1.87
116884--116948	7	9.4	7	80	14	64	78	7	12	1	1.02
116884--116952	14	5.1	14	80	16	83	79	7	11	1	0.98
116930--116966	18	2.1	18	89	0	56	81	2	13	2	0.92
117832--117894	25	2.6	23	80	11	72	33	7	3	55	1.45
120071--120556	139	3.5	138	83	2	562	31	27	16	24	1.96
120564--120840	122	2.3	122	82	1	340	35	24	14	26	1.93
120905--121186	122	2.3	121	81	3	314	36	22	13	27	1.92
120520--121200	342	2.0	342	83	1	873	34	23	14	26	1.94
123844--123928	32	2.9	30	80	18	99	25	10	3	60	1.46
123883--123944	25	2.5	25	83	0	79	20	12	3	62	1.43
124064--124149	34	2.6	33	85	10	106	25	12	4	56	1.55
126781--126827	20	2.4	19	79	10	58	44	27	10	17	1.81
126812--126884	19	3.7	19	83	9	76	36	21	9	31	1.86
126944--126974	14	2.2	14	94	0	53	41	35	22	0	1.54
130478--130514	18	2.1	18	89	0	56	32	5	10	51	1.60
130470--130522	24	2.2	24	86	0	70	35	3	13	47	1.61
131363--131420	26	2.2	26	100	0	116	32	13	34	18	1.91
131407--131448	22	1.9	22	85	0	57	23	16	33	26	1.96
131568--131694	20	6.3	20	78	3	139	17	11	25	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131564--131682	40	3.0	40	88	4	186	17	12	25	44	1.84
131564--131755	20	9.9	20	71	16	136	18	13	24	43	1.86
131653--131791	73	1.9	73	90	0	224	20	14	23	42	1.88
131786--131833	21	2.3	20	80	20	55	41	12	16	29	1.85
139223--139270	15	3.2	15	87	0	69	10	16	64	8	1.48
140389--140423	18	1.9	18	100	0	70	34	11	0	54	1.37
141015--141369	177	2.0	177	100	0	710	40	15	19	25	1.90
144363--144419	29	1.9	30	82	10	73	38	8	3	49	1.51
144735--144781	16	2.8	16	76	20	51	74	8	0	17	1.05
146637--146695	21	2.8	21	86	0	82	32	27	23	16	1.96
146701--146798	42	2.3	42	75	0	97	39	20	14	25	1.90
151352--151395	15	2.9	15	76	10	54	43	9	2	45	1.48
154452--154490	17	2.3	17	81	0	51	66	10	7	15	1.43
162361--162409	25	2.0	24	84	4	62	36	28	4	30	1.76
168314--168347	17	1.9	18	88	5	52	44	32	2	20	1.67
181066--181204	7	19.1	7	64	17	52	75	0	15	9	1.04
181066--181157	42	2.2	42	82	2	103	76	0	15	8	1.02
181090--181204	18	5.9	20	70	16	73	76	0	14	8	1.01
181087--181163	15	5.4	14	73	9	66	76	0	15	7	1.00
181084--181198	28	4.0	28	74	21	89	75	0	14	9	1.04
181068--181205	36	4.0	33	71	18	95	74	0	15	9	1.06
181088--181204	57	2.1	57	82	7	141	76	0	14	8	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182137--182544	105	3.9	105	89	0	602	38	17	19	24	1.93
184377--184409	11	3.1	11	91	4	50	66	0	6	27	1.15
185544--185621	2	39.0	2	100	0	156	50	0	0	50	1.00
186555--186611	29	2.0	29	85	0	78	38	8	5	47	1.57
189537--189596	15	3.9	15	73	26	54	18	1	3	76	1.00
189537--189597	11	5.3	11	75	24	63	18	1	3	77	0.99
189537--189619	23	3.5	23	78	15	98	18	2	4	74	1.10
193988--194025	17	2.3	17	90	4	60	31	0	5	63	1.17
193983--194047	17	3.5	17	73	17	58	32	0	3	64	1.09
195764--195828	33	2.0	33	84	6	87	18	41	16	23	1.90
196222--196294	25	2.8	26	72	15	71	23	2	8	65	1.33
204564--204590	3	9.0	3	100	0	54	33	0	0	66	0.92
212583--212633	23	2.2	24	82	10	61	47	5	3	43	1.46
221966--221997	2	16.0	2	100	0	64	50	0	0	50	1.00
230565--230959	196	2.0	198	94	5	703	48	12	4	34	1.60
237003--237552	280	2.0	275	85	5	741	30	18	20	31	1.96
240066--240104	20	2.0	20	84	0	51	30	28	20	20	1.98
240109--240171	22	2.6	24	87	9	85	17	20	22	39	1.92
241820--241919	36	2.8	35	78	1	110	27	17	18	38	1.92
241820--241955	71	1.9	71	86	0	191	26	18	19	35	1.95
245981--246087	35	3.0	35	73	9	101	27	20	24	28	1.99
245946--246086	71	2.0	70	86	4	194	26	20	21	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
247172--247197	13	2.0	13	100	0	52	84	0	15	0	0.62
247169--247202	13	2.9	11	84	16	50	82	0	17	0	0.67
247169--247202	16	2.1	16	88	0	50	82	0	17	0	0.67
248219--248405	76	2.4	80	81	4	229	36	18	16	27	1.93
248610--248756	78	1.9	78	92	0	249	39	18	16	25	1.91
251234--251261	14	2.0	14	100	0	56	57	0	0	42	0.99
260097--260134	18	2.2	17	90	4	58	31	15	13	39	1.86
263290--263399	23	4.8	23	75	4	105	31	22	25	20	1.98
263285--263399	46	2.5	46	94	0	203	31	22	25	20	1.98
268670--268734	22	2.9	23	74	4	69	32	21	26	20	1.97
275103--275171	34	2.0	34	91	0	111	37	30	14	17	1.90
277634--277686	27	2.0	27	85	10	74	43	0	5	50	1.25
281910--281944	6	5.8	6	93	0	61	0	45	0	54	0.99
284870--284935	20	3.2	20	80	6	71	40	24	10	24	1.86
284881--284943	20	3.2	20	88	0	90	34	22	14	28	1.93

Tables:   1

The End!